<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:30:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598237" ref_strand="+" ref_description="SGN-U598237 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353035|emb|CAO44925.1| (e_value=9e-18) unnamed; (*ATH) AT3G17090.2 (e_value=4e-19)  Symbol: None | similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:At4g38520.2); similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:At4g38520.1); simila... ; ">
      <seq>ttgttaatagcagccgacaaaattaagaatgaggcacattctatttcgtgttcctcctccaaccaacacctcccacttccctctgccccccttacccccaaactacaatcctctacatatacatatctgtatctaactcttagtattgcttcaagaaagtttgattcaacttgtaaattttcaattttgaaagttgggtacttgtttttttttgaattggggttagctccatgtgggattcttgaattttgatttgatgaatttccttccaagatgtttgagttacagtgaatgtagtggtggagctggaagaagtgaaattaggggtggtgaaagttccaatggtggatttgggaaagatgggttgttgtggtttcatgatattgggaattgtgggagtggggaatattccatggctattgtgcaagctaatcaggtcttagaggatcagagccagattgagtctggtccatttggaacttttgttggagtctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="2664" stop="3763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2964" g_stop="3463" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U598237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2964" e_stop="3463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATG</genome_strand>
        <mrna_strand>TTGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571855" ref_strand="+" ref_description="SGN-U571855 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353035|emb|CAO44925.1| (e_value=8e-113) unnamed; (*ATH) AT3G17090.1 (e_value=2e-105)  Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); conta... ; (*SWP) sp|Q9LUS8|P2CH1_ARATH (e_value=1e-25) Probable protein phosphatase 2C homolog 1 OS=Arabidopsis thaliana GN=At3g16560; ">
      <seq>gtttgtgatcacttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagagggtttacttctgttgtttcggaaaattggcattctcgaccacaactagcaacagtgggggcatgctgcctggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgtgtagtccttggaaagaaggttggaaacactggagaaattgctgccatgcagctatcaacggagcataatgccaatattgagtctgttaggtgggagcaaaaagacttgcatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaagattttgcagggaaccaacaaatggaaaattcagagttcctcaaccccttaatatgcctatcctgttggccactccaacaattttaaaacatcctctacatccaaatgactccttcctcatatttgcttctgatggtctatgggagcacttgagcaatgaaaaggccgttgaaattgtgaagagtcaccctcgtaaaggaagtgcaaagaggcttgtcaaggctgctctccatgtagctgccaaaaaaagagagatgcgatattctgatcttcgaaacattgacaaaaaggtccgacgtcattttcacgatgatataactgtaattattttattcttaaacatgacctgatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3193" stop="7609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3493" g_stop="3523" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="402" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5852" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="639" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7151" g_stop="7309" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="797" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U571855" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3493" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5852"/>
          <exon e_start="7151" e_stop="7309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAAGTAAGTTCTATGCACCAAACCATTATACTTTCCTTCTTATTCTGTTCAATTTAAGCTAATATGCTTCTTATGGGCAAACTATGACTTCAAATACATGTTTGCTTTTGATGATATACATAATTTTTATTTTTATTTTGATAATTCAAGGATAATTTTCAGTAACTACCAAGTATGTAGAAGTCTATAAAATCAAAGCGCATCAAACTACTGTAACTTAACCATCTATTAAGAGGAATACTGTATTCTTCTTACACTAAAGGCAAACCACACAGAAAACAAAAGAGATAGATATATATGCTAACCAAATCGGCAATCACACAGTGATATACATCCAGTGTACTAAATTGGACCATCCAAGAGTCAACTTCCTCATACACTCCATAAGTGCTTGTCTATACCAGCATAAGTACACATCCTACGATCACCCTCATGATTTCTGAATGATATCTTCAGACGTTACTTCTCTTTTAGGTTTTCAAGCTCTCTGGCATTCCCCATTAGATTTCAGCAACTTGTAGATGACTTCTCTAATGTCTTTCCATTATTTATACCCTGAATTTTCTCCTTAATTATTCCTTCATAATTTTATTGAAAAGTCGATCTCTTTAGCACCAAATAATCAGGTTTTCAGGTGAGAAGATGCTTTCACCTTCCAAGTTCTATTCTCCTTGTGATCTCTTTCAATTTCTGCGAGTAGGTGTGATGCCTCTTTGTGATGTCTTTTAAATGAAATGCTCAGACCTTCCAAATCTAGTTTGAAATGGGATCATTTGTTCCTACGGTGTATATTTTATTTTTATGGTGAATGGTGAAAGAAAAAGTAACAGAAGTGTACCAAAGATATCATGTATTTTCCAAAAGAGCTCTGTAACATATGAATGATAATCAAATGTTACTTTGATCTTGGGAGCACACCAGTGATTGAAGCCACTCAAGCTGTGGCCCTGCCTTGAAATTCCATTTGATTTACTCACAGTTATATCATCTTTACTCTCCATACTAACAACCCTGTAAACTCAGTACCATGCCAAATGACATAACTCTTATCCTTTTACTCTTCATGGTTCAATTTATTAATTAAGGCTTCCCTTCGAGATCCTCTCTCTCTCTCTCTCTATATATATATATATATATATCTTTCTCTTTGTTGAAGTGTATAAACACATGCCGGACATTTTGACTCTTTTAAAGAGATGGTTTTAGCTCGTTGTCCCTTCTGATGTATTTTGGTATGCACTCTTGAACGTGAAAATAAATCTGCTCACTTTTTCATGCTCATATTTTTCTTGCAAATACAGGGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGATATGT</genome_strand>
        <mrna_strand>GTTTGTGATCACTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAA-CATGACCTGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590954" ref_strand="+" ref_description="SGN-U590954 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaagatgaccaagaaaagacaacatatcccatcaagaattgtgtcgtctttcatagtgacaacagccataatgtactctcttatgcatggttatgataaagataaaatgtaaaaaacttcaatgcgaaattttaataaatggcaatcgtataaagattactaactttaagggattaacatgaatgatgatccatataaagagtcatcgagcatccatatttgtattttctttcttatccgttcatcaagtacatgttttcatcttatgccttggtttgagttcattgaggagaacgctgagacctctactgtcagtagtatactgacgttctcttttgtggattctatattgacctatgccaatatagacacaggtttcatagaggagcagattacaaagtgttgctttattgcagaagttgatttggtgagctccacccttcaccgtggaatttcttcttttttcagttagaattttttttaattcagtttttggggaatagccagaaaatttgtgttctgtgcattccctttagcgctccagtagaaagtgtcggctcttggttgaagccggtaaatcaaacactatttggggcctttattttcaatatagtagtaggtttattcttactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="17500" stop="16264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17200" g_stop="16564" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U590954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17200" e_stop="16564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTCCCTTTAGCGCTCCAGTAGAAAGTGTCGGCTCTTGGTTGAAGCCGGTAAATCAAACACTATTTGGGGCCTTTATTTTCAATATAGTAGTAGGTTTATTCTTACTATTTT</genome_strand>
        <mrna_strand>AAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTCCCTTTAGCGCTCCAGTAGAAAGTGTCGGCTCTTGGTTGAAGCCGGTAAATCAAACACTATTTGGGGCCTTTATTTTCAATATAGTAGTAGGTTTATTCTTACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580332" ref_strand="+" ref_description="SGN-U580332 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147805926|emb|CAN69998.1| (e_value=8e-11) hypothetical; ">
      <seq>tgggggtcttttaacacgcttgaaacccccacaaagcggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaaatatggtgcgtagactgaagaagagtctctatggtttgaaacaagcaccaagaccatacttaaagtttggcaggtttatgatgactattggcttacttggtataatgatgatcactgttcttacttcaagaaatttataaattcgtacatcactttgctcctgtatatggatgatatgttggtgacaggttaaaacatgtgtgggatcacaaaactgaaggagcaaatgtctagtgaattttttgataaagaatttgggactggaaattgaaagagacaggttgaagctgagtcagaagaaatagattgaaaaaataattcttaaagaggctaaacatttgggatgccaagttggtgcacttcaagaaaatctgaaagcaagtcctttggcaggtcacttgaattgggattgtttttggcaagcgtagaagttaactttgtttgaaagaaagaatcttgagacacaggtttcatagaggagcagattacaaagtgttgctttattgcagaagttgatttggtgagctccacccttcaccgtggaatttcttcttttttcagttagaattttttttaattcagtttttggggaatagccagaaaatttgtgttctgtgcatttcctttagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18849" stop="16362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18544" g_stop="17456" g_length="1089"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="1124" r_length="1089" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="0.212" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16832" g_stop="16662" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1295" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U580332" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1260</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18544" e_stop="17456"/>
          <exon e_start="16832" e_stop="16662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAGGTGAGTTGCGACTTGTTCTTACTAAAGTTCTTTCCTGAAGAGATCATGTCCCATAAGTTATTTGAATTAATGTTTCTAAAGTATTAATGTGAGCTAAACTGGAATGAGTGAGCTCACATTGCGCATCATTGAATGAGTCTTTCTCGTGCTCTATTTTCTGCTTTGTGTTTATCCGTCTAATGGAAGTCTACTTATTTGTGTATGAGTGCTTTGTGGTAACTCTTTTCAGCCCTAAAACAGTACCTAATTCCCTGGAAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTCCCTTTAGCGC</genome_strand>
        <mrna_strand>GCGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTTCCTTTAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593724" ref_strand="+" ref_description="SGN-U593724 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tcataaccatgcataagagagtacattatggctgttgtcactatgaaagattacacaaagattgatgggatatgtcgtatttgcttggtcatctttccagggaattacgaactgatttatggttgaaaagagttactacaaagaagaagatagagcacgagaaagactcattcaatgatgtgcagtgtgaactcactcattacagtttagctcacattaataccttagaaacattaattcaaataacttatggggcatgatctcttcaggaaagaacttgagtaagaacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="16805" stop="17746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17105" g_stop="17248" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17249" i_stop="17298" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17299" g_stop="17446" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="294" r_length="150" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U593724" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17105" e_stop="17248"/>
          <exon e_start="17299" e_stop="17446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGACGACACAATTCTTGATGGGATATGTTGTCTTTTCTTGGTCATCTTTCCAGGGAATTAGGTACTGTTTTAGGGCTGAAAAGAGTTACCACAAAGCACTCATACACAAATAAGTAGACTTCCATTAGACGGATAAACACAAAGCAGA-AA-ATAGAGCACGAGAAAGACTCATTCAATGATGCGCAATGTGAGCTCACTCATTCCAGTTTAGCTCACATTAATACTTTAGAAACATTAATTCAAATAACTTATGGGACATGATCTCTTCAGGAAAGAACTTTAGTAAGAACAAGTC</genome_strand>
        <mrna_strand>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGATTACACAAAGATTGATGGGATATGTCGTATTTGCTTGGTCATCTTTCCAGGGAATTACGAACTGATTTATGGTTGAAAAGAGTTACTACAAAGA..................................................AGAAGATAGAGCACGAGAAAGACTCATTCAATGATGTGCAGTGTGAACTCACTCATTACAGTTTAGCTCACATTAATACCTTAGAAACATTAATTCAAATAACTTATGGGGCATGATCTCTTCAGGAAAGAACTTGAGTAAGAACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573485" ref_strand="+" ref_description="SGN-U573485 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|147802106|emb|CAN72752.1| (e_value=3e-62) hypothetical; (*ATH) AT5G11090.1 (e_value=4e-41) | Symbol: None | serine-rich protein-related, contains some similarity to serine-rich proteins | chr5:3524681-3525847 FORWARD | Aliases: T5K6.80, T5K6_80; ">
      <seq>gatcttctcccacctataaatttacccttcgacactcgctaggtttgccaaactgaaaagccttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtggtaacaggttggtgattttcatatattaactgaggctcatctcttgagagttttccggcggcggcgtctgatcctggctgcggttcttactactccggtgaaatgaaagctgtagggcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggttttgttgcagtaactgattgcaattgaaaggacaatttggacttttaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21793" stop="20227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21494" g_stop="20527" g_length="968"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="968" r_length="968" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U573485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>968</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21494" e_stop="20527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCT</genome_strand>
        <mrna_strand>GATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603327" ref_strand="+" ref_description="SGN-U603327 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147826986|emb|CAN77778.1| (e_value=4e-33) hypothetical; (*ATH) AT2G25270.1 (e_value=9e-31) | Symbol: None | expressed protein | chr2:10766828-10769797 FORWARD | Aliases: T22F11.14, T22F11_14; ">
      <seq>acttacattactgtattattttgttgtagtttttgttttagaatgatttgtcatgctttctatagtgtttttgttataactttttcgatctactttgaactgtttttctcatgtcggagtgtctattgaaaacaacctttaacatgcttcatgatatcttaatttgtgagattacactgtgtacgctcagaggcggagctaggtggggttctggtttcggacgaatcgagtagcttttccatagaccctattaatatatgtatattaatttgtgaactcctaacaaaattgattgaagaaaatttagaactcccaaactcttaatcctggcttcgcctctgtgtatgctgttgctgactaaatgagacatttttagatgaatttagggagggaagaaatgaggtatttgctgaaggtcccaatatagttgaggctccagtgcagagctcatcgcttatattggctgctgagagaacatacagaaaagaccctctcaatggttttaagagatataatggaggatggaacatcgatgaccgccattactgggcttctgttgcatatacaacctttccgttctttatcaccgcgttgatctggtttgtgatctttggactttgcttattgttcatctttgtctgctctcgttgctgcaaaagagaaccttatggatactcttcaatggcttatgctctctccctcgtattccttgcgctttttaccattgctgcaatgtatgctctctctcccttctcctcacgaaatggatgactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="31183" stop="29533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30883" g_stop="30332" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30331" i_stop="30058" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30057" g_stop="29833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="777" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U603327" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30883" e_stop="30332"/>
          <exon e_start="30057" e_stop="29833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACATTACTGTATTATTTTGTTGTAGTTTTTGTTTTAGAATGATTTGTCATGCTTTCTATAGTATTTTTGTTATAACTTTTTCGATCTACTTTGAACTGTTTTTCTCATGTCGGAGTGTCTATTGAAAACAACCTTTAACATACTTCATGATATCTTAATTTGTGAGATTACACTGTGTATGCTCAGAGGCGGAGCTAGGTGGGGTTCTGGGTTCGGACGAATCCAGTAGCTTTTCCATAGACCCTATTAATATATGTATATTAATTTGTGAACTCCTAACAAAATTGATTGAAGAAAATTTAGAACTCCCAAACTCTTAATCCTGGCTTCGCCTCTGTGTATGCTGTTGCTGACTAAATGAGACATTTTTAGATGAATTTAGGGAGGGAAGAAATGAGGTATTTGCTGAAGGTCCCAATATAGTTGAGGCTCCAGTGCAGAGCTCATCGCTTATATTGGCTGCTGAGAGAACATACAGAAAAGACCCTCTCAATGGTTTTAAGAGATATAATGGAGGATGGAACATCGATGACCGCCATTACTGGGCTGTAAGTACTCAAGATTTTACCCTTTTTTTGTAATTTAGTATTTTCTTCGTTTCAATTCGTTTGTCTGGTTTTGACTTGACGTAAAGCTTAAGAGATTAGTGAAGACTTTTGAATGTTGTTGTCTTCAACTAAACATATGTAGAATGTACCAAAATGTGCATTATGCTTATATGCTCTAAAATATGCTACGTGGAAAGTTGGAATTATTCTTGCGGACTTAAAACATGGTTTTCCTTTGATTATTGTTCATGCTATAATTTTGTTTCTTGTGCAGTCTGTTGCATATACAGCCTTTCCGTTCTTTATCACCGCGTTGATCTGGTTTGTGATCTTTGGACTTTGCTTATTGTTCATCTTTGTCTGCTCTCGTTGCTGCAAAAGAGAACCTTATGGATACTCTTCAATGGCTTATGCTCTCTCCCTCATATTCCTTGCGCTTTTTACCATTGCTGCAATGTATGCTCTCTCTCCCTTCTCCTCACGAAATGGATGACTTTCC</genome_strand>
        <mrna_strand>ACTTACATTACTGTATTATTTTGTTGTAGTTTTTGTTTTAGAATGATTTGTCATGCTTTCTATAGTGTTTTTGTTATAACTTTTTCGATCTACTTTGAACTGTTTTTCTCATGTCGGAGTGTCTATTGAAAACAACCTTTAACATGCTTCATGATATCTTAATTTGTGAGATTACACTGTGTACGCTCAGAGGCGGAGCTAGGTGGGGTTCTGGTTTCGGACGAATCGAGTAGCTTTTCCATAGACCCTATTAATATATGTATATTAATTTGTGAACTCCTAACAAAATTGATTGAAGAAAATTTAGAACTCCCAAACTCTTAATCCTGGCTTCGCCTCTGTGTATGCTGTTGCTGACTAAATGAGACATTTTTAGATGAATTTAGGGAGGGAAGAAATGAGGTATTTGCTGAAGGTCCCAATATAGTTGAGGCTCCAGTGCAGAGCTCATCGCTTATATTGGCTGCTGAGAGAACATACAGAAAAGACCCTCTCAATGGTTTTAAGAGATATAATGGAGGATGGAACATCGATGACCGCCATTACTGGGCT..................................................................................................................................................................................................................................................................................TCTGTTGCATATACAACCTTTCCGTTCTTTATCACCGCGTTGATCTGGTTTGTGATCTTTGGACTTTGCTTATTGTTCATCTTTGTCTGCTCTCGTTGCTGCAAAAGAGAACCTTATGGATACTCTTCAATGGCTTATGCTCTCTCCCTCGTATTCCTTGCGCTTTTTACCATTGCTGCAATGTATGCTCTCTCTCCCTTCTCCTCACGAAATGGATGACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585477" ref_strand="+" ref_description="SGN-U585477 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157339757|emb|CAO44298.1| (e_value=3e-76) unnamed; (*ATH) AT5G11040.1 (e_value=3e-71) | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30; ">
      <seq>cgggataggaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagatgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcacttcgtatttcttgtaattcctccttatatagaggtccattttgtttaagagaaaactgtatcactcactttccaattgatatacaataggattctacagtgatttgtaaagctatattattcaatgaagagctggacatttattcctgcaatttatagctttatgattttgttgcatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42424" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42126" g_stop="41682" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="40949" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="926" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U585477" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42126" e_stop="41682"/>
          <exon e_start="41429" e_stop="40949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCTG</genome_strand>
        <mrna_strand>CGGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAAGAGAAAACTGTATCACTCACTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589384" ref_strand="+" ref_description="SGN-U589384 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15238938|ref|NP_196665.1| (e_value=1e-48) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G11040.1 (e_value=1e-50) | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30; ">
      <seq>gatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggtccacttacttatgctggagatgcatcaataaatggatctattcctcccggtaggcgattggttgttccccttaatatatgtgtttcacaggggttatctcttatgaaggctcgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaatgttcaagtggaaaccagttctgctgaagaatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtcttcgagattggcgtgtctgtcaatatggaggattctaacaatgaggagaatcctgagtatgactatcctaaaacaaggattgacagagattacactgccagggtgctaataccattagaacattttaagttacctgttcttgatggtacttacctggttaaggagtctcaaatggatangaccagtactagaaaatcaagcttctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="47254" stop="41790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46954" g_stop="46794" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42590" g_stop="42090" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="662" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U589384" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46954" e_stop="46794"/>
          <exon e_start="42590" e_stop="42090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATTGTTCATTGTTTTGGTGTTATCACTGAACATTATTTTAAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTG</genome_strand>
        <mrna_strand>GATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATANGACCAGTACTAGAAAATCAAGCTTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589386" ref_strand="+" ref_description="SGN-U589386 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339757|emb|CAO44298.1| (e_value=1e-99) unnamed; (*ATH) AT5G11040.1 (e_value=2e-93) | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30; ">
      <seq>gcaagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctgggaattttgatgcttttcccatcagtgttagtctgcctcctaattctccaaagtgattgcattatctggaattcctactgaagtaggntcattaaaaatcccagatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48922" stop="43764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48623" g_stop="48572" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="345" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44064" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="710" r_length="365" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U589386" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48623" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATT</genome_strand>
        <mrna_strand>GCAAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATT-CTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGNTCATTAAAAATCCCA-GATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589385" ref_strand="+" ref_description="SGN-U589385 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339757|emb|CAO44298.1| (e_value=1e-98) unnamed; (*ATH) AT5G11040.1 (e_value=1e-92) | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30; ">
      <seq>gcaagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctggggattttgatgcttttcccatcagtgttagtctgcctcctaattcctccaaagtgattgcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48922" stop="43811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48623" g_stop="48572" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="345" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44111" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="665" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U589385" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48623" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTAT</genome_strand>
        <mrna_strand>GCAAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGGATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569416" ref_strand="+" ref_description="SGN-U569416 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ttccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgactcttcccgcatactgatactctagattttatggtatctgcagttgctggcttatttctttcctcagactgatactggttttatggtgtctgcaattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="45426" stop="44198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45126" g_stop="44498" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U569416" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45126" e_stop="44498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGA-TCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGA</genome_strand>
        <mrna_strand>TTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGACTCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569345" ref_strand="+" ref_description="SGN-U569345 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157339757|emb|CAO44298.1| (e_value=2e-155) unnamed; (*ATH) AT5G11040.1 (e_value=6e-156) | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30; (*SWP) sp|Q6PA97|NIBP_XENLA (e_value=1e-11) NIK- and IKBKB-binding protein homolog OS=Xenopus laevis GN=nibp; ">
      <seq>aatttctcaattgttgggcttaaatcaatactccgtcctatgcttaatatctgatctaaaaaccgcttcgccggagctgccaatctccactttccatcttctccggcgatcatttcccggcagagttcgaaatggaacccgacgtgagcatcgaaacaagttgtatgatccgagtagcagttctaccaatcggatctatagcaatccctttattccgcgactacacttctatgctagttcgtcactacacagtatcattatcttccatcagttcattctacacagaacatcaaaaatctcctttcgctcatcaaccttgggattccggtagcctacggttcaaatacatggtcggtggttcaccggctagtccttgggaagattttcaatccaatcggaaaatttttgccgttataggcatttgtcactgtccttcttcgcctgatctgcattctgtcatggatcagtttgtgaccgcatgtaagagttactcgtcttcagttgttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcaggaaggagttggccaaggaagtggttgatttgttgactacggctgctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="55482" stop="48507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55182" g_stop="54641" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53262" g_stop="53043" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="762" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52938" g_stop="52756" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="945" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51167" g_stop="51058" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1055" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49898" g_stop="49839" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1056" r_stop="1115" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48857" g_stop="48807" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1166" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U569345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55182" e_stop="54641"/>
          <exon e_start="53262" e_stop="53043"/>
          <exon e_start="52938" e_stop="52756"/>
          <exon e_start="51167" e_stop="51058"/>
          <exon e_start="49898" e_stop="49839"/>
          <exon e_start="48857" e_stop="48807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTCAATTGTTGGGCTTAAATCAATACTCCGTCCTATGCTTAATATCTGATCTAAAAACCGCTTCGCCGGAGCTGCCAATCTCCACTTTCCATCTTCTCCGGCGATCATTTCCCGGCAGAGTTCGAAATGGAACCCGACGTGAGCATCGAAACAAGTTGTATGATCCGAGTAGCAGTTCTACCAATCGGATCTATAGCAATCCCTTTATTCCGCGACTACACTTCTATGCTAGTTCGTCACTACACAGTATCATTATCTTCCATCAGTTCATTCTACACAGAACATCAAAAATCTCCTTTCGCTCATCAACCTTGGGATTCCGGTAGCCTACGGTTCAAATACATGGTCGGTGGTTCACCGGCTAGTCCTTGGGAAGATTTTCAATCCAATCGGAAAATTTTTGCCGTTATAGGCATTTGTCACTGTCCTTCTTCGCCTGATCTGCATTCTGTCATGGATCAGTTTGTGACCGCATGTAAGAGTTACTCGTCTTCAGTTGTTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</genome_strand>
        <mrna_strand>AATTTCTCAATTGTTGGGCTTAAATCAATACTCCGTCCTATGCTTAATATCTGATCTAAAAACCGCTTCGCCGGAGCTGCCAATCTCCACTTTCCATCTTCTCCGGCGATCATTTCCCGGCAGAGTTCGAAATGGAACCCGACGTGAGCATCGAAACAAGTTGTATGATCCGAGTAGCAGTTCTACCAATCGGATCTATAGCAATCCCTTTATTCCGCGACTACACTTCTATGCTAGTTCGTCACTACACAGTATCATTATCTTCCATCAGTTCATTCTACACAGAACATCAAAAATCTCCTTTCGCTCATCAACCTTGGGATTCCGGTAGCCTACGGTTCAAATACATGGTCGGTGGTTCACCGGCTAGTCCTTGGGAAGATTTTCAATCCAATCGGAAAATTTTTGCCGTTATAGGCATTTGTCACTGTCCTTCTTCGCCTGATCTGCATTCTGTCATGGATCAGTTTGTGACCGCATGTAAGAGTTACTCGTCTTCAGTTGTTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597102" ref_strand="+" ref_description="SGN-U597102 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340817|emb|CAO47622.1| (e_value=2e-26) unnamed; (*ATH) AT4G39235.1 (e_value=2e-24) | Symbol: None | expressed protein | chr4:18268043-18269320 FORWARD | Aliases: None; ">
      <seq>gaatttggttaaagaaattgattttccagtttttgatttcttcagctcaaaacatgtcgacggaaaaaagtccgcttgagcaaacgtcaccggctgttgcatcatcatgccgaaaaaagaagtctgaaagtgccacatttttggaggatgtgaaggatcatattgatgagtttatacatgcctcaagggatgaacacgcatcttgctttaaaaaaaccatcaataaaatgtttgggatgtctaaaattgtcgctgaaaaaaatgctgaaccaaaggaggttgaaagctcacttcctctccaaactgttgtatctgagtaaagattccctaagtaaaaagaactcgggaaggtgagattgtggagggtcaaaacatgtatgcagtctaaagccccttccctcatcaggttttattgggctatccacatatatcaataaacaacaatttgaaatgctcttgcctgaaaagttgggctgctttttacatctgttggttttaccaaacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="59458" stop="62506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59758" g_stop="59807" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59808" i_stop="61658" i_length="1851">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61659" g_stop="61835" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="227" r_length="177" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61926" g_stop="62207" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="509" r_length="282" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U597102" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59758" e_stop="59807"/>
          <exon e_start="61659" e_stop="61835"/>
          <exon e_start="61926" e_stop="62207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTGTTATAGTAATTGATTTTCCAGTTTTTGATTTCTTCAGCTCAGGTAACCAGAATCCTCTGTTTCTTACCCTTGTTTCCATTATTATTTCGTTTATTGCTTCCGATTAACCTAATGGAAGGTTGATACCAGCTTTATCTTTGTTAATCGCATTTTAGATGCTTCGTTTTTGATGGAATGTATAGTTAGAAAATGCGGAGTTGTATTTTTGTGCTTTTGCAGTTTACAATTTAGTGATTTTATGTTGATTATAACTCGTTATCTGTTTACGATTGAGTGATTTTGTGTTGATCATAACTCTTATGTGTTTAGAATGGAGTGATTGTATATTGATAACTCTTATGTGTTTGTTTTGGATTACTATTATGTTGATAACGATGTGTTTGTTTTGGATTACTATTATGTTGATAACGCTAATGCATATAATGTGTTTGAAGAAAGTTCTCTGTGATTTTCGATCTGGCGTCCTGCATTAAGCGGCTTAGCCTTATTGAAAGAATTCCGCTTAGATCTCCTTTTCCTTTCTTACAGAAAAAATATTCTGAAATTTTGAATGGCTACCTAAATACACTAATTCCATATATTTTTAGAGGAAGGCTTTTCCCCGAAACAACTCTTCTCTAGACGTAGAATGTAATGGTTCGTTTGGTGATTTGAAAATAGTTTGCGACAACACGTTCAGCTTCCAGCAAGTTTATGCTGCTTTTTTAGTGTGCTGACAAATAGGAAAAGGTTTTTGAAACAACTCTTGTCTAGACGAAGAAATAAATGGTGGTAGAATGTAATGATCTATTTGCCCAATAGCTTGTGCGACAACATATTCAGCTTCCAGCCAAGTTAATGCTGCTTTTTTAGTGTGCTGACAAATAGGAAAAGTATTTGAAACAACTCTTTTCTTGACGTAGAAAAAAAATGGTGGTAGAATGTAATGGTCTATTTGCCAAATAGCTTGTGCAACAACATATTCAGCTTCCAGCAAGGTTATGCTTTCAAGCGTGCTGACTAATGGGAGAAAGGTACTTTTTGTGGATGCACAAGTAACTAACAAACAGAAGACATTTCAAATTATCTAGGTTGAGTCTCTTTAGGCTGTTTGATTTGTAGATAGGCTTTGTGAAGTTGCACCAAATGCGCTCAACTTCCACTTCCTTGTCCACCCCTCACCACCTACCCAAATTATATCTTTGGTGTTTAACTTCTTCAAATGGGTGTGCATTCAGTAAACCACAATAGACTGACGGGGACGTTTCCCTATACTGTTTCTTGTACCCTATCAATGCAATATCAGGAGCGTAATGATGGAGTAAGTTTTGTGCTATGCTTCCGGTAATTTATATTTATTTTGTATATATCAGATTTTCGTTGTAGGGGAAGTCTGCAAATTCTGTTCCTGTGAGGATTTAACATCCTTTCTGCTACTTCATCCGTATTGTCACCATTGATTAGTTTATTCGGAACGACAATTGATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAGGTTAGTTCCAAATCAAAATAGCATTATTGATCGTTCCTTTCTTAATGAGGCATTATGATTTATTCTTAACAGCTGTGGTTATGCCTTCAGATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAGTAAAGATTCCCTAAGTAGAAAGAACTCGGGAAGGTGAGATTGTGGAGGGTCAAAACATGTATGCAGTCTAAAGCCCCTTCCCTCATCAGGTTTTATTGTGCTATCCACATATATCAATAAACAACAATTTGAGATGCTCTTGCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAG</genome_strand>
        <mrna_strand>GAATTTGGTTAAAGAAATTGATTTTCCAGTTTTTGATTTCTTCAGCTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGTCGACGGAAAAAAGTCCGCTTGAGCAAACGTCACCGGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAAGGGATGAACACGCATCTTGCTTTAAAAAAACCATCAATAAA..........................................................................................ATGTTTGGGATGTCTAAAATTGTCGCTGAAAAAAATGCTGAACCAAAGGAGGTTGAAAGCTCACTTCCTCTCCAAACTGTTGTATCTGAGTAAAGATTCCCTAAGTAAAAAGAACTCGGGAAGGTGAGATTGTGGAGGGTCAAAACATGTATGCAGTCTAAAGCCCCTTCCCTCATCAGGTTTTATTGGGCTATCCACATATATCAATAAACAACAATTTGAAATGCTCTTGCCTGAAAAGTTGGGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597101" ref_strand="+" ref_description="SGN-U597101 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340817|emb|CAO47622.1| (e_value=9e-27) unnamed; (*ATH) AT4G39235.1 (e_value=7e-24) | Symbol: None | expressed protein | chr4:18268043-18269320 FORWARD | Aliases: None; ">
      <seq>ggattttgatagaataagttagtcattaacattttacattgactgcaccattattcatattggagtattcgtggaactatcttcttttttcttatgcctttaaaaataataattctaatgtacttcattctaacctagctaatatattttagacattttttatctagacttgctcctcctctcggaagaggaacataattaatgtactataacactttgaccataacctaacctagccaatattttaagacatactctgctaagtctttatttagatttgctctttctcttgaatgagggacatagttaatgctctaaaacactttgacggtagcattgctactataacattacttctgccttctggcacagttctgcacccaacttagctgtttatatcatggtatttctcactatttataacataagcagaacatgtcgactgagaagagtccgcttgagcaaacgtcacctgctgttgcatcatcatgccgaaaaaagaagtctgaaagtgccacatttttggaggatgtgaaggatcatattgatgagtttatacatgcctcaatggatgaacacgcatcttgctttaagaagaccatcaataagatgtttgggatgtctaaaattgtcgctgaaagaaatgctgaagcaaaaggagttgagagctcacttcctctccaactgttgtatctgagtaaagattcccctagtagaaaagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="60928" stop="62342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61227" g_stop="61835" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61926" g_stop="62042" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="725" r_length="116" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U597101" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61227" e_stop="61835"/>
          <exon e_start="61926" e_stop="62042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAGGTTAGTTCCAAATCAAAATAGCATTATTGATCGTTCCTTTCTTAATGAGGCATTATGATTTATTCTTAACAGCTGTGGTTATGCCTTCAGATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAGTAAAGATTCCCTAAGTAGAAAGAACTC</genome_strand>
        <mrna_strand>GGATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG..........................................................................................ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAAGGAGTTGAGAGCTCACTTCCTCTCC-AACTGTTGTATCTGAGTAAAGATTCCCCTAGTAGAAAAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566140" ref_strand="+" ref_description="SGN-U566140 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gcctgagaagttgtgctgctttttacatctgttggttttaccaaacattagacatgtctagataaacaaaataaatgggcacaacaatttgagatgctcttgcctaagaagtcttgctgctttttacatctgtctgttttaccacacattagacatgtctagataaacaaaataaatgggtacaacaatttgagaggctcttgcctaagaagttatgctgctttttatgtctgttggttttgccacacattagacatgtctagattttttttttaaaaaaaaaactaatgggcattacaataacctgatgaatcctcatagtgattgttggatcctttgttttatggtttgtgctcttccttttctgtcgacatctaactagctttagctttggaccatactctatgcttgttctctagttacatgcgtatttagagatatcatccgagggtttgatccaggcttggatggtggagttttcaaaatacgcttgtaatggtgccctgataagatgtatgcgtccacgatcagtcaacggaccaggtcccttaactcaacaagaacaggaataaagaataaacgatgaacagaaaaccacacaagcaatttacgtggaaacctccttgctcagggaaataaaaaccacgacctgttgcacaagattttcaactgtttctctaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="61857" stop="63140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62157" g_stop="62840" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U566140" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62157" e_stop="62840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAAAGAGTAAACGATGAACAGAAGACGACACAAGCAGTTTACGTGGAAACCTCCTTGCTCAAGGGAGT-AAAACCACGACCTGTTGCACAGGATTTTCAACTGTTTCTCTAATCTT</genome_strand>
        <mrna_strand>GCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAAAGAATAAACGATGAACAGAAAACCACACAAGCAATTTACGTGGAAACCTCCTTGCTCAGGGAAATAAAAACCACGACCTGTTGCACAAGATTTTCAACTGTTTCTCTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566142" ref_strand="+" ref_description="SGN-U566142 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>cagctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgatcaataacttcttctcacattggttgtaactgggttcacttttgcttaaaaaagattagagaaacagttgaaaatcctgtgcaacaggtcgtggttttactcccttgagcaaggaggtttccacgtaaactgcttgtgtcgtcttctgttcatcgtttactctttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63992" stop="62423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63692" g_stop="62723" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="970" r_length="970" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U566142" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63692" e_stop="62723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</genome_strand>
        <mrna_strand>CAGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAAAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577090" ref_strand="+" ref_description="SGN-U577090 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|18650662|gb|AAL75809.1| (e_value=5e-96) ethylene response factor 1 [Lycopersicon esculentum]; (*ATH) AT5G25190.1 (e_value=3e-41)  Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | chr5:8706793-8707739 REVERSE... ; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=3e-40) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003; ">
      <seq>cctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69315" stop="71431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69615" g_stop="69799" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="71136" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="1086" r_length="901" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U577090" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1086</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69615" e_stop="69799"/>
          <exon e_start="70236" e_stop="71136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</genome_strand>
        <mrna_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594172" ref_strand="+" ref_description="SGN-U594172 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaagagacaatagattatattataatggaattttacaactagtagaaggttttcttagagtaaaaactctaggaaccaaaaagagaaaatgcctagacctactaacgatacatagattttaaacagagggagactacttaaaagacttaatacaacaataactaagcttaagtcccaaacaaatcgggaacgggtatacaaatggggttaaattatcgagatgagtatctttcaagtccagatcattgtatgacccacaatgagacttttactgtcagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="71428" stop="70546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71128" g_stop="70846" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U594172" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71128" e_stop="70846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGAAAAGATTATATTATAATGGAATTTTACAACTAGTAGAAGGTTCTCTTAGAGTAAAAACTCTAGGAACCAAAAAGAGAAAATGCCTAGACCTACTAACGATACATAGATTTTAAACAGAGGGAGACTACTTAAAAGACTTAATACAACAATAACTAAGCTTCAGTCCCAAACAAATCGGGAACGGCTATACAAATGGGGTTAAATTAGCAAAATGAGTATCTTTCTAGTACAGAACAATGTAGGACCCAAAAAGAGACAATTACTGAGAGAGAA</genome_strand>
        <mrna_strand>AAAAGAGACAATAGATTATATTATAATGGAATTTTACAACTAGTAGAAGGTTTTCTTAGAGTAAAAACTCTAGGAACCAAAAAGAGAAAATGCCTAGACCTACTAACGATACATAGATTTTAAACAGAGGGAGACTACTTAAAAGACTTAATACAACAATAACTAAGCTTAAGTCCCAAACAAATCGGGAACGGGTATACAAATGGGGTTAAATTATCGAGATGAGTATCTTTCAAGTCCAGATCATTGTATGACCCACAATGAGACTTTTACTGTCAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597708" ref_strand="+" ref_description="SGN-U597708 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205400|gb|AAU90303.2| (e_value=9e-30) Zinc; ">
      <seq>caatttaattatcacatgttattaagtttatttatctaaacaaaaagtgttcaattttcaactgtaatgaaaactgaaattcattaaaatatttacgttataaattattcttgatatcataaaaacattacgactaattcacttctcttttgggtagaaagtacaagttcttccgttgtttccttcttgtccacattgtccacaacagtttgtgttcaccgaaatcttttcatctgcattctttcttcttctttttcttggtcgtccagatgatcttctgtatctaggtggatacacagtttcagctaccacattattaggatctgaccaatcttccttatctggcattggtaccattgaaatttcatatgtttttgccaatgcatcaggcttgtaataatcagagcaatacggattcatatcggtgacattcttttttttcaatacagcgattgcatgtgaacaaggtatctcatctagttgaaatctaccacaagaacatactttccgctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="89756" stop="88643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89457" g_stop="88942" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U597708" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89457" e_stop="88942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTAATTACCACATGTTTGTACGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTCGTAATTAAAACTGAAATTCATTTAAATGTTTACGTGATAAATTATTCTTTATATCATAGAAACATTACGACAAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAATTTGTGTTCACCGAAATCTTTTCATCTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATCTTCTGTATCTAGGTGGATACACAGTTTCAGCTACCACGTGTTTAGGATCTGACCAATCTTTCTTATCTGGCATTGGCACCATTGGAATTTCATATGTTTTTGCCAACGCATCAGGCTTGTAATAATCAGAGCAATACGGATTCATATCGGTGACATTCTTTTTTTTCAATACAGCTATTGCATGTGAACAAGGTATCTCATCTAGTTGAAATCTACCACAACAACATACTTTCCGCTCAAA</genome_strand>
        <mrna_strand>CAATTTAATTATCACATGTTATTAAGTTTATTTATCTAAACAAAAAGTGTTCAATTTTCAACTGTAATGAAAACTGAAATTCATTAAAATATTTACGTTATAAATTATTCTTGATATCATAAAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCCGTTGTTTCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCACCGAAATCTTTTCATCTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATCTTCTGTATCTAGGTGGATACACAGTTTCAGCTACCACATTATTAGGATCTGACCAATCTTCCTTATCTGGCATTGGTACCATTGAAATTTCATATGTTTTTGCCAATGCATCAGGCTTGTAATAATCAGAGCAATACGGATTCATATCGGTGACATTCTTTTTTTTCAATACAGCGATTGCATGTGAACAAGGTATCTCATCTAGTTGAAATCTACCACAAGAACATACTTTCCGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602849" ref_strand="+" ref_description="SGN-U602849 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="93142" stop="91644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92851" g_stop="92570" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92368" g_stop="92246" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="405" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92162" g_stop="91944" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="624" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U602849" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92851" e_stop="92570"/>
          <exon e_start="92368" e_stop="92246"/>
          <exon e_start="92162" e_stop="91944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>CTCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG.........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567094" ref_strand="+" ref_description="SGN-U567094 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157339742|emb|CAO44283.1| (e_value=9e-94) unnamed; (*ATH) AT1G15880.1 (e_value=2e-90)  Symbol: None | Golgi SNARE 11 protein, identical to Golgi SNARE 11 protein (GI:13898893) {Arabidopsis thaliana}; similar to putative cis-Golgi SNARE protein GI:2583133 from (Arabidopsis thaliana);similar toSP:O95249: 28 kDa Golgi SNARE protein (28 k... ; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=2e-89) Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11; ">
      <seq>tccactcaccccccaccaaacgcacgctgtaccctattgtttcctccaaatttcaattcccttattcttcttcttcttctctccattttgtagagaaagggattctagaatcttccatttctgcaattcttcttcgatcctccttgctctctttctcatggatcctcctacctcttgggattccttgcgaaagcaggcaaggaagcttgaagctcagctggatgagcagatgcatttgtatcgtagatttgtttcaaacaaaagtggtaacgctaatgatcatgatcttgaatctagtatagatcagctgctcaagcaacttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="111379" stop="104576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111079" g_stop="110884" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110883" i_stop="108641" i_length="2243">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108640" g_stop="108410" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="427" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107225" g_stop="107058" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="595" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106451" g_stop="106338" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="709" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105171" g_stop="104875" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="1006" r_length="297" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U567094" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1006</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111079" e_stop="110884"/>
          <exon e_start="108640" e_stop="108410"/>
          <exon e_start="107225" e_stop="107058"/>
          <exon e_start="106451" e_stop="106338"/>
          <exon e_start="105171" e_stop="104875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCACCCCCCACCAAACGCACGCTGTACCCTATTGTTTCCTCCAAATTTCAATTCCCTTATTCTTCTTCTTCTTCTCTCCATTTTGTAGAGAAAGGGATTCTAGAATCTTCCATTTCTGCAATTCTTCTTCGATCCTCCTTGCTCTCTTTCTCATGGATCCTCCTACCTCTTGGGATTCCTTGCGAAAGCAGGTAACAACATTCATTCATCATTTCAGATCGAATTTCTGTTTTTAATTTTACGTAAACAATGATTTAGATGACTTCTCTATTTGTGCTTGTTGACTGTGTCAATCTTCTCTGTTTCGTTCCAACTTGTATAACATTTCTCCAATGAAAATTGTGTTTTGTCGGTGTGCAATTTTCCAGAATTTTGGATGATGATACATGAATTTGAGTGATGAAATTGAATAGATCTATGGGGGCTGGGATAGGTTTTGTGATCCTGTAGTTACGGAGGGAGATTTAGAGGTAGAACTGCTAGGTATTTTTTTTGCGATCTGACTATACTCTACCAGAATCAAAAGGTGCAATGACCCGAACAGCCAGAATTAATGTGAATATATACCCTGGAACCATTCTAGGAAGCAGCATTGATAGGATTAGATTTTGGTTTTTAAGTTGTTCTGTTTCATTTGGGTTGCTGGTTAGGATATGTAAACTTCATGATGTAATGCTGCTCTCTCTAAAAGGGAAGCATGTGCTTATTGGTCCAACTCGTGTATTAATTCCCCCCGTAGCTGTAGTTTTTTATTGCATAAGTTTTGCTAGAGAAGCATAGGGGAGATAGTTTGGTGTAATGCAATTATTGCAGATCATATTTCTTTTTACTCTTGAGGGTTAATCTTAGAAATTAACCACAATGGTGTCTCTTCTTTCTTTCCATTCGAGTGGAATTTAAAAAGAGTTTCCATTAGAGTGGAACTTAAAAGAGTGATACAAATTGTTCTATATTTTGTTGACAATCTGGACTATGACTACTTATAGTGGCGCTTGGTTATGTGATTGAACAGGACCGTATCAATAGTTATGTAAGTGGTTTTGACTGAAAGTTGATTGATTTTCGTCCAAATCCTTGCTACTAGAGGCCTGAAATATTGCATATGAAAATGAATGAGAAAGGTACAACTCAAGTTTTGGAATTCTCAACAAATTAGCTTTGTCAATGATTTGCACATGAAGCTGTTCCCCTTATTGTACTTGTAAGACCTTATCACAGAAAGCATGATCATTTCGCACGATCCAAGTATACCTTTTAATATATGCTTTCATGCCAAAGCCTATGCTGTTATTACAGCCAAAACAAATTTTCCAATGCTGAGTCTTTCATTGTGAAACTTCGTTGTATCATACTCTGAAACTCATGTTATCATTTTAAATTTGAAACTAATCTGCACTGGGATATCCCTAGGCATAATGAGTAACTATTGATTTCAAAAAATAGTGCGCATAAGGAGTAATCAGCTCCAATGATTGAAATATTTGACAAAACTATCTGCCAAATGGAAAATAATCTATCAGCAGCCTTTCATTTCTTGAAATTCAATTTTTCATTCTTCTTATTCAGGCATTTCGATGCTCTTTTCTCCGCCCCTCCTCTTCCCCCTTTTTATAAGCTATCAATATTCCTTTTTGACCCACAATGCATTTGGTCCTTCTTAGATAATTGTATTATACAGATTTGATAGGACTACATAAAATAGGATGACACACTTGAAGCCATGCAAAATTGGGTTTTTTATCTGCTAAAATGTTCCTGGCTTTGCCACAGGTTTATTTAGTTATCAGGGCCATTGTTAATTAAGAATTTGTGAAGGGATAGGATGAGCTTGGTTTTTGGAGGTGATATAGTCAAGAAGAGTCTCAAGGATGAGGATCTGGGAGGTCCCAGCTTTGCCAACTTATATTAGCTTTTAAGCCATTAGGAAACCATATCACTTAAGAAAACCGAATCTGAGCAGTTTTGATTGGGAACTTCTAGCATGCGTAAAGATGAGTTTCTCACTTTTCTTTTGGGGGATTCAGAATTTATATCTGAGTTTCTTGGTTGCAATTTGAAGAAAGCATTTTATGAGTATCTGAAAGTTTGTGCTAGGTTGAAGTGGTCTCTCTTTAGAATTTAGTGCTTAATGTAGGAGCCTTGAAAAACCATTTTTCTTGCTTAGTCTTAGCATAGTTGTTCGTTTGAGCTTATGATAAGATTACGTGAAGAGTTCTCTAATGGTGTGGAATTGGCTAGAATCATGACAAACAGTTTGCATGTGGTAGGGATAACTTTTAGTTGGTCCTCTGCTTGATTCAGCTTAGGTTCACATTGGACAATTGATCTTGTCTGTCATGTGGTGAAGCTTCTGTTGAAATCTCACGTTAATTTCTTCTTTTCTCCCCTCATATATATTGAAAAATTCTTATGCGTGTTTTACATATCCAACTAGGCAAGGAAGCTTGAAGCTCAGCTGGATGAGCAGATGCATTTGTATCGTAGATTTGTTTCAAACAAAAGTGGTAACGCTAATGATCATGATCTTGAATCTAGTATAGATCAGCTGCTCAAGCAACTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</genome_strand>
        <mrna_strand>TCCACTCACCCCCCACCAAACGCACGCTGTACCCTATTGTTTCCTCCAAATTTCAATTCCCTTATTCTTCTTCTTCTTCTCTCCATTTTGTAGAGAAAGGGATTCTAGAATCTTCCATTTCTGCAATTCTTCTTCGATCCTCCTTGCTCTCTTTCTCATGGATCCTCCTACCTCTTGGGATTCCTTGCGAAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAAGCTTGAAGCTCAGCTGGATGAGCAGATGCATTTGTATCGTAGATTTGTTTCAAACAAAAGTGGTAACGCTAATGATCATGATCTTGAATCTAGTATAGATCAGCTGCTCAAGCAACTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596495" ref_strand="+" ref_description="SGN-U596495 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaagaaaatttcaccacagttatgatgttgaatccgtcttttcatatgtggaagtatttctcaaacacttggagctgcctaaaaaacttacttttgtttcttgcttctctttcaatgcggatctattgttttcctcatattatagctggggtgatgtgctaaacatgagatatatacatttaaataaagtaaaaatttaagacttggtcagcgtaatatatgttaatcttaaaatgaatgtgcagtcgttatggacttgaaaccaaaacaatatgcaactatatacttatcttcaaatcattgcacccaaactattacgcttaatgttttttgagtaacagctgtaaaggaaggaaaaactataagagtacaaagctctgtctagatggccacagattttccatggacattgtaatttttaagagtacttattttattgtagtaatcaggtgctgctctttctgttagttttatagccgtgtgtattgttgtatttaattgccgactcttgataatatatcagaagaaattactgacttcttgatatagatggatggntgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="107300" stop="106089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107000" g_stop="106389" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U596495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107000" e_stop="106389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGG-TGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACA</genome_strand>
        <mrna_strand>GAAGAAAATTTCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGNTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592503" ref_strand="+" ref_description="SGN-U592503 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaataaaaatttaaagttgaaaatatttttaaaaagcataattaattttttggggagggggtggggctgaaagacagaaaaattccatggcagtagatatttgaagtatcagcacatataaaatctaatctatcatgcataacagaaacattaggccgaagcatgtccctacttgcatttctttttgcatatgggacaaaatagtcgatacatgtagaactgtaaggtgcagctacaacaactcatatctttaatcaatcatatttgccggaatacgagataaaacatattttcacaggaagggttgtgaagtaggtgttttgtgctttactttttttggttttgcagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113633" stop="112427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113333" g_stop="112727" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U592503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113333" e_stop="112727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGA</genome_strand>
        <mrna_strand>AAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591300" ref_strand="+" ref_description="SGN-U591300 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339739|emb|CAO44280.1| (e_value=5e-32) unnamed; (*ATH) AT2G25170.1 (e_value=5e-17) | Symbol: None | chromatin remodeling factor CHD3 (PICKLE), identical to chromatin remodeling factor CHD3 (Arabidopsis thaliana) GI:6478518 | chr2:10721485-10731065 FORWARD | Aliases: F13D4.130, F13D4_130; (*SWP) sp|Q9S775|PKL_ARATH (e_value=4e-16) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL; ">
      <seq>gcacaagtttctgctccaggagtctatcaagcaccaaatgggctgaatgcggctaatgctgggacttctggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggtacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgagtatcagagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="116417" stop="112608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116118" g_stop="115846" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114840" g_stop="114767" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="480" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112938" g_stop="112908" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="511" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U591300" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116118" e_stop="115846"/>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114767"/>
          <exon e_start="112938" e_stop="112908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</genome_strand>
        <mrna_strand>GCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGGCTGAATGCGGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591789" ref_strand="-" ref_description="SGN-U591789 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147858106|emb|CAN81391.1| (e_value=5e-21) hypothetical; (*ATH) AT2G25170.1 (e_value=1e-11) | Symbol: None | chromatin remodeling factor CHD3 (PICKLE), identical to chromatin remodeling factor CHD3 (Arabidopsis thaliana) GI:6478518 | chr2:10721485-10731065 FORWARD | Aliases: F13D4.130, F13D4_130; (*SWP) sp|Q9S775|PKL_ARATH (e_value=9e-11) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL; ">
      <seq>aagcgatctttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatacaattaatgctgagtatcagagagacgttgttataaatcatgacttatcccaaatatatgttgttgagaacagcttttgaccttgggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="116296" stop="114464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115996" g_stop="115846" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115845" i_stop="115282" i_length="564">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.169" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115281" g_stop="115229" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="204" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115228" i_stop="115058" i_length="171">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="337" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114840" g_stop="114767" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="411" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U591789" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115996" e_stop="115846"/>
          <exon e_start="115281" e_stop="115229"/>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG</genome_strand>
        <mrna_strand>AAGCGATCTTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATACAATTAATGCTGAGTATCAGAGAGACGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTG...........................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599719" ref_strand="+" ref_description="SGN-U599719 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339739|emb|CAO44280.1| (e_value=1e-46) unnamed; (*ATH) AT2G25170.1 (e_value=7e-38) | Symbol: None | chromatin remodeling factor CHD3 (PICKLE), identical to chromatin remodeling factor CHD3 (Arabidopsis thaliana) GI:6478518 | chr2:10721485-10731065 FORWARD | Aliases: F13D4.130, F13D4_130; (*SWP) sp|Q9S775|PKL_ARATH (e_value=6e-37) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL; ">
      <seq>actagggtttaatcaaagccagagggccgcatttgtcaaagttttaatgaggtttggagttggagactatgactgggcagaattcacaccaagactgaagcagaaaacttatgaagaaataaaagattatgggtttctgtttttgtctcatattgctgaagatattactgaatcaccaacatttagagatggggttccaaaagaaggactaagaatacccgatgtgctattgaggattgcagtcttgcttctcattagagacaaggtcaaggctttctcggaagagacaactagtcctctttttgccaaggacatcgtatcttggtttcctggattgaaaggtggacgtgtttggaaggaagatcatgatttgctgctgctacgagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="127675" stop="118595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127375" g_stop="127325" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127324" i_stop="127213" i_length="112">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127212" g_stop="127138" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="126" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127137" i_stop="125948" i_length="1190">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125947" g_stop="125886" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="188" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125885" i_stop="125753" i_length="133">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125752" g_stop="125676" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="265" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125675" i_stop="119020" i_length="6656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.638" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119019" g_stop="118897" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="388" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U599719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127375" e_stop="127325"/>
          <exon e_start="127212" e_stop="127138"/>
          <exon e_start="125947" e_stop="125886"/>
          <exon e_start="125752" e_stop="125676"/>
          <exon e_start="119019" e_stop="118897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGGGTTTAATCAAAGCCAGAGGGCCGCATTTGTCAAAGTTTTAATGAGGTATCATCTGGCTATCTTCCTTTCTGTTCTGTGTTATTTCTCTGCATTTTTCCTGTGTTATTTCTCTATTGTTAATGCATGAGGGTGTAGAAATAATCTATCTTCTTTACAGGTTTGGAGTTGGAGACTATGACTGGGCAGAATTCACACCAAGACTGAAGCAGAAAACTTATGAAGAAATAAAAGAGTACGTAAAGTTATCAACTTTGATTTCTGTATGTTCCATATTTCTCTATCATAGACTGCTCCTGATAAAATAAATGGACCACATTGATGTGTTGACTAAATTGTTTCTGTATCTCTCCGGTAAAGGGATTTTTTAGTGAAGAATGCATTACATGCCTTGCAACAAAACAACAAAAAACTCGGTGTTCATTTTGGTCCTATACCCTAACTCTGTTAAGAAAGTAACTTTCCTCCTTTTCTCTCTCATCTCCCTACTTCCTTCTACCTCCCCTCTCTACTATATCATCCATTAAAACTAAACTGCTGTATGATAAAGCTCAAAATATACTTGAAAAAGGAACATGTTCTAAGCCCTAACTCTTTCTAAATCGTCGTTTCTCTATCTTTCGAATCTCCAGAATTAGGCTAACATGATCGAAGTTATACCTTGCATATGGTATTGTCATCGTCGGCTGTGGTGAAAGAGCAGAGACAGCCTTCTTTTTCTTCATTGCAAGCTAATTGAACAATCGTGAAGGATTTTCGTTGATCTTATTAATTTTCTTAAGAGGCATCTCTTGGATAATGCCATGCAAGATTTCTGAAACCTCTGTGAGTTGGGAGGAAGCAGGACTTTGACAAAGGATATAGAAAGATGAAGAGTTATCCCAGCTAGAATTTGGTGGACAATCTTGAAAGAAAGAAATTCTAGATGTTTTGAGAATTTGGACAATTCTGTGCAAAAGATCAAATTGAACTGCATTTTACTCTTTTGACTTTGGGGGTAAACAGTCTTACTCAGGAGAAACTGTAGAAATTCTTGATATGCTAGATTCCATTTGATGGTCAGAATAGCTGCAATGTGTTGGAGTCACATTGTAAATCTGGTTTCAGACATTACAGCCTATGTACTGTTTGGTTCATTTAAGAAAAGCACAGAAGTTATCAGTTTCAATAAAACAAATAAACCATCTGACAAACTATAATTCTACTTCGGTTATTGCAGAAGTTGATGTCAAATCAACTTAAAATTTGATTTCTCTGGCAGTTGTAGCTGATAACTTGATGGCTTCTCATATACTGTGATTTATCATATAATATTATTACGACAAATTCCTACTGTTGTATTTCCCCCACATCGATTGATTTAGTAGCTACATTTGATTTGCTTGAAAGGGAATTTTTTTAATTTAATTCTCTTCTGTCTTGCAGTTATGGGTTTCTGTTTTTGTCTCATATTGCTGAAGATATTACTGAATCACCAACATTTAGAGGTGAAGGAGTTATATTTATTCTTTACGTCTTTCTCGTGAATCTCTTATTTGTCCTTTTTTTTACTGCTTTAATTTCTCTCCCCTCCTCTCTGCTCATCATTTTGGTCAAAACATTTAAAATTTTGGATTGCAGATGGGGTTCCAAAAGAAGGACTAAGAATACCCGATGTGCTATTGAGGATTGCAGTCTTGCTTCTCATTAGAGACAAGGTAATTTTTTAAATCAGATAACTTGCTGAACTACAAGGTTGTTGGCTATTGGTCAATGCTGCTTTAGTTGTGAACAACTTTTAAGTGGGACTTTGTAAACTGTCCTACTTTCATGGTGCTTCTTTTGATCTGTGATATGACTATATAGCCTAACGTGGATATACGGGCTTATTATATTGTCAATAATTTAGATGCGGCATGCATTTGAAAGAAGGATTTTTAATAGGTAAGCAATCTTTTGCAACAACGAAGTATGGTGCAACCCGTATACTAGTGAAGTATAAGTAGATTGATCTAAAAATTTGAAGGACCTCAGAAAGAACACTTAACTCCGATTAACATACTACAAAAGAACTTGACAATCAGATTCGTAGGTCACAGCCATTCCTGTGACGTAGAATGGCAGATTTTTTTGGCTTTTATGCTCTTATTACTGAAGAATATGGGTAGATTTGTGGAAGAAGGAAAACAAAGTTATCAATGTTCAAGAGTAAGCATAGGTCTTTTTTTATTGTTCACACGAGGTAACATAGAACACCTTATACGAAACATGTCTACTTGGTCTGAGCTGAGGCTACTCTTCTGCACCAACCAAAATCACTTGAAAGGTTGACAACTTCATAAAGTGGGATAAGATCTAGTGTCATTTGGAATGTAGCAGATTTTCTTTTCCAAGTTATGAAGCTGTGTTCGTTTGATGGTTTTTGCTTTACAAAACTTTGAAATCCTTTCAAGTTATAGAAGTTTTTCTAGAAAAAGAAGGTCTCTGTTCTGAAAAAAGTTTTATTCACCTTGTGTACCTTCCAAACAAGGAGTAGCTTGAAGTACTCAACATATCTCATATACTGTAGCACTTGTAGATACTTCCGTACTGGTAAATGGGATGATGCACTGTGTAAAGGAACATCAACTGACATATTGATTACTGACAGTTTAAGATAAAGTCTTCTTCTGAATTGCTTCTTTTTGCTGTGCGCATCTGTTTAAATGTATTAAAGGCTTGACCCTGGAAATTAATTTATTATTCTATTTTAGAAAATATAAATTGGAAAATCTCAAATTACAAGACTAATTAATTTGATTGTTATTTACTAAACCATATCAGAGGTCTACTATTTTTTGGATGACCAAATCAACTCATCACTTGTTGGTGGATTAATTTTTTATATATGATGGTCTTCATGGGGACATATTGCACGTCTATCTTCATTTGTTATGTAAATAGGACATTGCTTAGGGACTTGGTTGTACTTTTTCATTCTTTTGTTATCTTTTAGAATCAACTCTGGAGCTACTATATTAGATGTGGGGAAGGTATTGATAATTTGTTTTTTCTCACGATTCTCTCTTTATCTCAAAAGTTCAACTTTTAGGTATTGTCATTGTAAGATCTCATACTTCTTTTTCTTCAATTCATTGAGATATCTAGGACCAAATATGATCTTCTGAGTCAGGGTAATTGTTAGTATTTCATTACTTCCAATGAAGACAATTCCTGAATGAAATCGTTCTAATTTATATTCTACCTTCGTTTCTTTTTTGCACTGAGATTCAGATTTCAGACACAATTTGGCGTTTTATTTACATCATTCAGAATGATAATGCTTGGGCATATCTTTTTGCACCATTTTAGTCATTTAGGTCTTCTCATAATATGTTGCATCAATCTCTTTGGAGGCTTAAACATACTTTCTTGTAACTGAAGTGCCCAATCTACACGCGACATCCTTCACATCATATTATGAAGAAAATATGCGATAGACATTTGGGAAGAAACTGAATTACTTGATTGTAAGCCAGTAGACACATCAATGGATCTTAATGTCAAGCTATTATTGGGAGATGGGTAACTCTTTCCAAATGTTGGAAGACATCATTGATCGGCTGGCAAACTCAACTGCCTAATTGTTACTCCCCCCATTTCAATTTAATTGTCCTAGTTTGACTGAACACTGAGTTTAAGAAATGAGACTTTCAATCTTGTGGTCTTAATGTAAAGACGTGTGAAATGTCAATATGCTCTTTGGATTTTGTTGTCTTAAAAGGAAAGTTCAAGAATGGTGGCGTTCCTTTATCATATCTGGTACCCCTGACTATATTCTAAACAAAATTAAGCATGTTAAAGGCGAAACTCAAAGAATGGAGCAAAGAGCACAAGGTGAACTGGAAGGCAAGAAAAAAACACATCCTAGATCAAATAGGGAGCTTGGAGACCGTGAAATGATGATGAACAGCTGATAAAGGCTCATTTAGCCATGGAATATGACGAAGTAGCCAGGAATGAAGAAATATTTTGGTGGCAGAGATCCAGAGTCCAATGGATAAAATGTGGTGATAAAAATACTAAGTTTTTTCACAGAATGGCCACTGCACATAAAAGACTCAACACTATGGATTCCTTGTTGATCAATGGAGAACTATCTAGTGATCCTGTGGCTATCAAGGGCTCCATTTGTGAATTTCTATCAAGATCTCTACAAAGAATCAGAAAATTGGAGACCTTTTTTGAATCTTTATGAAGTACAAAGCATTTCAGCAGAAGAAAGAAACAATCTTGAGAGTTTTTGAGGAAGAAGAGGTACTGGCAGGGATAAAGATGTGTGCTGCAGAAAAAGCACCTGGACCAGATGGCTATATCATGGCCTTCTTTCAAGCTTTTTGGGAAACAATAAAGGAAGAACTGATGCAGACGTTCCACAGATTTTACTCTCACTACAAGTTTGAAAAGAGCTCCAATGCCACCTTTGTAGCTTTGATTCCTAAAAAGATTGGAGCAAATGATCTAAGAGATTTCAGACCCATTAGTTTAATCTCCGTGGTCTACAAAATCATAGCAAAGGTGTTGGCTGTTAGACTAAAGAAGGTAATAAGCAGAGTTGTAAACAACCACCAGATGGCTTTCATTAAAGGGAGACAAATAATGGATGCTGCTCTTATTGCTAGTGAATGCATTGACAGCAGGATTACAGGAGATGTGCCCGGAGTTATGTGCAAGTTAGTTACTGAAAAGGCCTTTGATCACCTGAACCGGAGTTTCTTGTTGAACATTCTCAGGCAAATGGGATTCTCCCTGAAGGTGGATTAAGTGGATAGAATTCTGTATCTACCAGGTTCTCCATTCTGATAAATGGAGAACCTGCAGGTTTTTTTCCAGCTGAAAGGGGTCTGAGACAAGGGGACCCCTTGTCACCTTTCTTGTTTATCATAGCTATGGAAGGGCTAGGCAGTCTGATGAGAAGGGCTGCAACAAACAACTGGATAGAAGGCTTTAGCATTAAGAACAAGACAGTGAAATCATGGAGGTGACTCACTTATTATATGCTGATGACACTCTGATTTTCTGCGAAGCTGAACAAGAACAAATATGCTACCTGATTTTCTGCGAAGCTGAACAAGAACAAATATGCTACCTAAGGGTGATACTGATGATTTTTGAAGCATGCTCTGGGTTGAAGATTAACTGGAGGAAAAGCAATATTTTCCAGTGGAAGAGGTGCAACAAATTCAATCTCTGGCAGGTATTTTGAGGTGCAGGATAGAGGAGTTGCCCACAATTTATTTGGGAATGCCATTGGGTGCTAATCACAAAGCCTTGAATATATGGGATGGAATAATAGAGAAAACAGAAAAAAGATTAGCTCTTTGGAAATCACAATACCTTTCCTTGGTAGATAGAGTTGTTTTGATCAATGCAGTCCTAAATTCTCTGCCAACATATGTAATGTCTTTATTCCCCATTCCCGGTGAGGTGCTGAAATTCTTAGACAAGTTGAGAAGGGATTTCTTATGGCAAGGAAGCAAGATTGAGAATAGTTTTAACCTGGTAAAATGGAGCGCAGGTTAGCAAAGCAAGAGTTTTGGAGGTCTGGGAGTGAGGAACTTAAAGCTTCATAATAAGAGTTTACTTACCAAATGGCTATGCAGATTTACTCAAGAAAATCAGTCCTTGTGGAGGGAGATTATCCTTCATAAGTATGGTCCGGAGGGGCAATGGTGCACTAATAAAGTGACTAATACATATGGGGTTGGGGTTTGGAAATCTATCAGGAATCTATGGACGACTCTCAAGCTAAACACCAAAGTTAGAGTTGGTAGGGGAGACAAGATACCTTTTTAGAAAGAGGACTGGAGTGGTCATGGCACACTTCAAATCCCTTTTTCCTAGACTATTCTCAATAAGCTTGAATACTGGATGCAGTATACAAGAAATGTGGTCCCCTCAAGGGTGGAACCTCACTTTCAGAAGACCCCTAAATGATTGGGAAATACCATGGGTAGTAGATTTTCTAAAACTAATTGGAAACTTCCCGGGCATTAATACAGATTCAGACAAACTCATTTGGAGGCACCACAATGATGGAATTCTCTCTGTTAATAGTGTATACAAAAGGGAACTGAGTGTTGCTGGAGGCAGGTCAACTGGACCTTGGAATACTATATGGAAAAGTGTGGATCCTAGTAAAGTGAAATGCTTCACTTGGCTAGTAGCTAGGAAAGCATGCTTGACACATGAGGCACTGCAAAAAAGGGGGTTCATCATAGCATCTAGATGCCTCCTCCGCAAGGAGGCACAAGAAAACAACAAACACTTTTTCATGCATTGCAAAGTAACGACACAAATTTGGGCTATGTTCACTGCCATTGCTGGAATCAATTGGATAATGCCTAAACTTACTGCAGACTTGCTTAGCTGTTGGATCAGAAGAGGAGGAAGCAAAAGCCAAATAATATGGTGGAGGACAGTCCCAGCCTGCATCTGGTGGATCATTTGGAAGGAGAGGAACCAGAGGATCTTTGAAGGAAAAGAATCCTCTATTTTGAAGATTAAGTGGAAAGTAATTACTTCACTAGGTTTTGGTGTAAAGAACAGAGTATAGAAGAGGAAATCCACTTAGTGGATTTTATAGGCCTTTTGTAAGTATCTCTCTTTTCTTTTTTGTAAACTATTTGGAGGTAGCCAGCATAGCCTTAATGCTGAAGGAATACAATTTTCCAATTTCAAAAAAAAAAAAAAGAAAAAGAAAAGATTGAAACTTAGGGAGCGCTACATTTTTTTTTCTCTCTGGAAGAGATTGGTTGCTTCCCTATGACTGTTGTAAGTCAGTTGCTGGACGCACTAATGGATATCCATTAAATGTTATGATTAGAATAGTGAAGTATCTTAAGAGAGTTAAGGAGGACTACTATATTATGATAGGAGTCATATAGGGCCGATTCAACGTTAGAAAAAGGTTTTACAGAAGTTTATTGTGTATCTTTGGAGGAAGCATGACTTTTTGGAAGAGTAAGAAACATAATATTGTTGCCTGATCAAGCACAGAAGCAGAGTATAGAGCCATGATTTTAGCCTTGCGGAAGTTTTGTAACTGAAACAATTTACTTGAAGATTTTGGAGTACAATAATGTCAGCCTATGAAGTCATATTGTTTTAATTGTACAGCCGTATATGTTACATCAAGTTCAGGGTTTCATTAGATATGAAATATATAGAAGTTGATTGTCATTTTTTGTTCAAAGGTGCTAAGTGAGGATATTGACTTGTGTTTTAGTTAGGATTGTCAACTGGTTTTATCTTAATTAAACCTCTTAGAAAATCTAGGATACTGTATATAGAGACAAGTTGCGAATACATGATTTGTATACTTAAGTTTGAGGGGGAGAGTTAGTTGTAAATAGGCGATAGCTTAGGAATTGTTTTACTTTGATATTCTCTTTAATTATTTTTGTAACTGTAAATATATTAGATGTTGTGATGTTATTAAGAACACCCACAATTCTCTATTTTGTTAGGGGTTTGTTTGGTTGGAAACAAGTTATCCCAGTATTAGTTATCCTGGAGTTAACTATCCTATGGGATAACTTATCCCACCATGTATATGGGATAACTTATCCCACCACAATGATATAAATGGTGGGGTAAGTTATCCCAAACATGGCAACCAAACAAGATACAAAATTTTATCCATCACTATTTTCTTATCCCATCACTATTTATTTTTATCCCTCACACCAAACAACCCCTTACAGTTTTGCTGGCTGCAGCTTGACTTCAGGTGAATTCATAAAGAGTTACCAGATCATCCGGCCCAGATTTTAAGCTTTCATATGTTTGGAGTTTGACAATTCTTGTTTGTCATAATATATTTTTGATGATAGATAATTCAAACAAAGATGAGTTCATTTATACACCTGTGTTTGGAAATTATAATCCTAATTTATAAAGTTCAAGGGAGTGGTTTATGAATGAGTTCGGTTCATTGATCTCCTAATGTAGTAACCTTTTAACCTTGAATGTCTCTCTGCTCTTTTTAGTACTTGCGCATGGAAGTGAGTACAAGTTGCTCTTTTTGCACGAGTGAGGAGTTCTGCTCTCACATATGAGACAAAGGGGACAATAACATTTTTTCCCCATGAATTGCTACTTCCAATGTATCCTTGTATAGCCTGATGGAATGCAATGTTATTTCTTATTCCTATGTTGATAGTTTCTTGTATTAGCTAGACAATCATATATGCATGGCTTTCATGTATAGTTTTTGCCGCTGCTAAAGTTTTCACGTGAACTCAGATATCCTCGTCAATCACATGAGCATATCAAGCTACACTTCTTAATGTACATTAATTTTTAAAATTTCACAGAGTGTCAGTTCTTTCAGGTCAAGGCTTTCTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCA</genome_strand>
        <mrna_strand>ACTAGGGTTTAATCAAAGCCAGAGGGCCGCATTTGTCAAAGTTTTAATGAG................................................................................................................GTTTGGAGTTGGAGACTATGACTGGGCAGAATTCACACCAAGACTGAAGCAGAAAACTTATGAAGAAATAAAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGTTTCTGTTTTTGTCTCATATTGCTGAAGATATTACTGAATCACCAACATTTAGAG.....................................................................................................................................ATGGGGTTCCAAAAGAAGGACTAAGAATACCCGATGTGCTATTGAGGATTGCAGTCTTGCTTCTCATTAGAGACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGCTTTCTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601469" ref_strand="+" ref_description="SGN-U601469 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147864587|emb|CAN79804.1| (e_value=9e-101) hypothetical; (*ATH) AT5G54830.1 (e_value=2e-89) | Symbol: None | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein, contains Pfam PF03351: DOMON domain | chr5:22290302-22293527 FORWARD | Aliases: MBG8.9, MBG8_9; ">
      <seq>gcattgaagtccatggatactaagtatgatttgcaattgaatcaaaatgctacaatgagagtgatatgggctttaggtttgataaaacctccggatagtcttcggcctttttatctcccacaaaatcatggtggtagctatgggcacttgacactgaatgtctcggaacatattgatgattgcttggggccgctggatgcagaagataaacaagatcaagaccttgtcattgcagataaaaaaggaccacttgttgtttcaacaggtccagctgtgttctacccaaatcctccaaacccttctaaagttctctacattaacaagaaagaggcaccccttctcagggtagagaggggtgttcaagtaaagttttcaattcaggctgggcatgatgttgccttctatataacctcagatccacttggtggaaatgctacattgaggaatatgtcagagaccatctactttgggggacctgaagcacaaggagttcaagccactcccacagaattagtttgggctcctgaccggaacacgccagatttagtttactatcagtctctatatgctcagaaaatggggtggaaagttcaagtggttgatgcaggcttacctgatatgtataacagcagcgtagttctggatgatcagcaggttacttcttttggacgttggctgaaaattcaatctccattgcagctcgaggggagaaaaagagtggttatttggcaattggttttggtcgtggtatggtgaatagttatgcatacgtgggctgggttgatgacactggtaacgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="158539" stop="157138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158240" g_stop="157438" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-U601469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158240" e_stop="157438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAAAGAGTGGTTATTTGGCAATTGGTTTTGGTCGTGGTATGGTGAATAGTTATGCATACGTGGGCTGGGTTGATGACACTGGTAACGGGAA</genome_strand>
        <mrna_strand>GCATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTAC-TTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAAAGAGTGGTTATTTGGCAATTGGTTTTGGTCGTGGTATGGTGAATAGTTATGCATACGTGGGCTGGGTTGATGACACTGGTAACGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565634" ref_strand="+" ref_description="SGN-U565634 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147766183|emb|CAN67967.1| (e_value=6e-64) hypothetical; (*ATH) AT4G31880.1 (e_value=7e-62) | Symbol: None | expressed protein | chr4:15419410-15424189 REVERSE | Aliases: F11C18.80, F11C18_80; (*SWP) sp|Q5U241|PD5BB_XENLA (e_value=8e-16) Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-B; ">
      <seq>gaaaaagctcacttgttcttctagggtttcacaagatctcttttgcctctgcaaaacacgagcgaattgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtataaatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactagaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgttgtcatgctggatctagaatgtgatgggctcatcgctgagatgtttcaccacttccttacagctataagagaggatcactctgaaaatgttttttcatccatggcaacaatcatgactcttgtgctggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="169002" stop="173713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169301" g_stop="169583" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="172942" g_stop="173145" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="487" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="173219" g_stop="173400" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="669" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-U565634" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169301" e_stop="169583"/>
          <exon e_start="172942" e_stop="173145"/>
          <exon e_start="173219" e_stop="173400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</genome_strand>
        <mrna_strand>GAAAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCACCACTTCCTTACAGCTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2964" PGL_stop="3463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2964" e_stop="3463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2964" e_stop="3463" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2964" stop="3463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATG</gDNA_template>
            <first_frame> L  L  I  A  A  D  K  I  K  N  E  A  H  S  I  S  C  S  S  S  N  Q  H  L  P  L  P  S  A  P  L  T  P  K  L  Q  S  S  T  Y  T  Y  L  Y  L  T  L  S  I  A  S  R  K  F  D  S  T  C  K  F  S  I  L  K  V  G  Y  L  F  F  F  E  L  G  L  A  P  C  G  I  L  E  F  *  F  D  E  F  P  S  K  M  F  E  L  Q  *  M  *  W  W  S  W  K  K  *  N  *  G  W  *  K  F  Q  W  W  I  W  E  R  W  V  V  V  V  S  *  Y  W  E  L  W  E  W  G  I  F  H  G  Y  C  A  S  *  S  G  L  R  G  S  E  P  D  *  V  W  S  I  W  N  F  C  W  S  L  *   </first_frame>
            <second_frame>  C  *  *  Q  P  T  K  L  R  M  R  H  I  L  F  R  V  P  P  P  T  N  T  S  H  F  P  L  P  P  L  P  P  N  Y  N  P  L  H  I  H  I  C  I  *  L  L  V  L  L  Q  E  S  L  I  Q  L  V  N  F  Q  F  *  K  L  G  T  C  F  F  L  N  W  G  *  L  H  V  G  F  L  N  F  D  L  M  N  F  L  P  R  C  L  S  Y  S  E  C  S  G  G  A  G  R  S  E  I  R  G  G  E  S  S  N  G  G  F  G  K  D  G  L  L  W  F  H  D  I  G  N  C  G  S  G  E  Y  S  M  A  I  V  Q  A  N  Q  V  L  E  D  Q  S  Q  I  E  S  G  P  F  G  T  F  V  G  V  Y  D  </second_frame>
            <third_frame>   V  N  S  S  R  Q  N  *  E  *  G  T  F  Y  F  V  F  L  L  Q  P  T  P  P  T  S  L  C  P  P  Y  P  Q  T  T  I  L  Y  I  Y  I  S  V  S  N  S  *  Y  C  F  K  K  V  *  F  N  L  *  I  F  N  F  E  S  W  V  L  V  F  F  *  I  G  V  S  S  M  W  D  S  *  I  L  I  *  *  I  S  F  Q  D  V  *  V  T  V  N  V  V  V  E  L  E  E  V  K  L  G  V  V  K  V  P  M  V  D  L  G  K  M  G  C  C  G  F  M  I  L  G  I  V  G  V  G  N  I  P  W  L  L  C  K  L  I  R  S  *  R  I  R  A  R  L  S  L  V  H  L  E  L  L  L  E  S  M  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3190" stop="3462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHVGFLNFDLMNFLPRCLSYSECSGGAGRSEIRGGESSNGGFGKDGLLWFHDIGNCGSGEYSMAIVQANQVLEDQSQIESGPFGTFVGVYD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2964" stop="3215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIAADKIKNEAHSISCSSSNQHLPLPSAPLTPKLQSSTYTYLYLTLSIASRKFDSTCKFSILKVGYLFFFELGLAPCGILEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3493" PGL_stop="7309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3493" e_stop="3523"/>
            <exon e_start="4671" e_stop="5041"/>
            <exon e_start="5616" e_stop="5852"/>
            <exon e_start="7151" e_stop="7309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3493" e_stop="3523" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.830">
            <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4671" e_stop="5041" e_length="371"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5616" e_stop="5852" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="7151" e_stop="7309" e_length="159"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3493" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5852"/>
              <exon start="7151" stop="7309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTGATCACTTATTTCGACATTTCCAAG : CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG : GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA : GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGATATGT</gDNA_template>
            <first_frame> V  C  D  H  L  F  R  H  F  Q   : A  I  S  A  E  G  N  G  V  V  T  E  E  T  I  Q  R  A  F  L  E  T  E  R  G  F  T  S  V  V  S  E  N  W  H  S  R  P  Q  L  A  T  V  G  A  C  C  L  V  G  A  I  Y  Q  Q  T  L  F  V  A  N  L  G  D  S  R  V  V  L  G  K  K  V  G  N  T  G  E  I  A  A  M  Q  L  S  T  E  H  N  A  N  I  E  S  V  R  W  E  Q  K  D  L  H  P  N  D  P  Q  I  V  V  L  R  H  G  V  W  R  V  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  H  T  R  F  C  R  E  P  T  N  G  K  F  R  V  P  Q  P  L  N  M  P  I  L  L  A  T  P  T  I  L  K  H  P  L  H  P  N  D  S  F  L  I  F  A  S  D  G  L  W  E  H  L  S  N  E  K  A  V  E  I  V  K  S  H  P  R  K  :  G  S  A  K  R  L  V  K  A  A  L  H  V  A  A  K  K  R  E  M  R  Y  S  D  L  R  N  I  D  K  K  V  R  R  H  F  H  D  D  I  T  V  I  I  L  F  L  N  H  D  L  I  C </first_frame>
            <second_frame>  F  V  I  T  Y  F  D  I  S  K  :  Q  Y  Q  L  K  E  M  V  *  S  Q  R  R  Q  F  K  G  P  F  L  R  Q  R  E  G  L  L  L  L  F  R  K  I  G  I  L  D  H  N  *  Q  Q  W  G  H  A  A  W  L  E  L  Y  I  S  R  H  S  L  *  Q  I  L  V  T  L  V  *  S  L  E  R  R  L  E  T  L  E  K  L  L  P  C  S  Y  Q  R  S  I  M  P  I  L  S  L  L  G  G  S  K  K  T  C  I  Q  M  I  L  K  L  L  F  L  D  M  V  F  G  G  *  K  E  *  F  R :   S  Q  D  P  L  V  M  F  I  L  N  T  Q  D  F  A  G  N  Q  Q  M  E  N  S  E  F  L  N  P  L  I  C  L  S  C  W  P  L  Q  Q  F  *  N  I  L  Y  I  Q  M  T  P  S  S  Y  L  L  L  M  V  Y  G  S  T  *  A  M  K  R  P  L  K  L  *  R  V  T  L  V  K :   E  V  Q  R  G  L  S  R  L  L  S  M  *  L  P  K  K  E  R  C  D  I  L  I  F  E  T  L  T  K  R  S  D  V  I  F  T  M  I  *  L  *  L  F  Y  S  *  T  M  T  *  Y   </second_frame>
            <third_frame>   L  *  S  L  I  S  T  F  P  S :   N  I  S  *  R  K  W  C  S  H  R  G  D  N  S  K  G  L  S  *  D  R  E  R  V  Y  F  C  C  F  G  K  L  A  F  S  T  T  T  S  N  S  G  G  M  L  P  G  W  S  Y  I  S  A  D  T  L  C  S  K  S  W  *  L  S  C  S  P  W  K  E  G  W  K  H  W  R  N  C  C  H  A  A  I  N  G  A  *  C  Q  Y  *  V  C  *  V  G  A  K  R  L  A  S  K  *  S  S  N  C  C  S  *  T  W  C  L  E  G  K  R  N  N  S   : G  L  K  I  H  W  *  C  L  S  *  T  H  K  I  L  Q  G  T  N  K  W  K  I  Q  S  S  S  T  P  *  Y  A  Y  P  V  G  H  S  N  N  F  K  T  S  S  T  S  K  *  L  L  P  H  I  C  F  *  W  S  M  G  A  L  E  Q  *  K  G  R  *  N  C  E  E  S  P  S  *   : R  K  C  K  E  A  C  Q  G  C  S  P  C  S  C  Q  K  K  R  D  A  I  F  *  S  S  K  H  *  Q  K  G  P  T  S  F  S  R  *  Y  N  C  N  Y  F  I  L  K  P  *  P  D  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3493" stop="3523"/>
                    <exon start="4671" stop="5041"/>
                    <exon start="5616" stop="5852"/>
                    <exon start="7151" stop="7309"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCDHLFRHFQAISAEGNGVVTEETIQRAFLETERGFTSVVSENWHSRPQLATVGACCLVGAIYQQTLFVANLGDSRVVLGKKVGNTGEIAAMQLSTEHNANIESVRWEQKDLHPNDPQIVVLRHGVWRVKGIIQVSRSIGDVYLKHTRFCREPTNGKFRVPQPLNMPILLATPTILKHPLHPNDSFLIFASDGLWEHLSNEKAVEIVKSHPRKGSAKRLVKAALHVAAKKREMRYSDLRNIDKKVRRHFHDDITVIILFLNHDLIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18544" PGL_stop="16564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18544" e_stop="17456"/>
            <exon e_start="16832" e_stop="16662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.635" acc_prob="0.212" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18544" e_stop="17456" e_length="1089"/>
          </exon>
          <intron i_serial="1" don_prob="0.635" acc_prob="0.212">
            <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="16832" e_stop="16662" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18544" stop="17456"/>
              <exon start="16832" stop="16662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG : ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTCCCTTTAGCGC</gDNA_template>
            <first_frame> A  E  V  S  D  Y  Y  G  R  Q  D  E  G  R  N  *  D  S  S  D  M  *  R  G  G  V  R  M  H  Q  *  K  G  V  R  G  *  L  *  E  H  T  V  S  A  K  K  V  C  K  T  E  V  S  *  Q  T  I  F  S  F  S  *  L  L  V  T  N  R  F  S  Q  L  S  C  F  D  K  A  M  Q  V  D  S  K  F  K  W  I  E  E  M  M  K  C  T  H  S  T  *  I  K  V  G  G  W  S  N  Y  Q  K  G  I  R  Q  S  R  I  M  Y  V  Q  D  E  T  E  A  *  *  F  N  E  I  *  S  K  V  G  N  K  R  F  S  T  K  G  M  Y  Q  F  T  E  I  F  S  L  V  I  K  L  P  T  I  R  V  A  L  E  L  L  *  H  K  I  Y  I  *  S  I  *  M  *  G  Q  P  L  F  M  M  I  N  M  K  D  V  Y  A  *  Q  P  E  V  Y  I  Q  A  D  K  K  N  M  V  R  R  L  K  K  S  L  Y  G  L  K  Q  A  P  R  P  Y  L  K  F  G  R  F  M  M  T  I  G  L  L  G  I  M  M  I  T  V  L  T  S  R  N  L  *  I  R  T  S  L  C  S  C  I  W  M  I  C  W  *  Q  V  K  T  C  V  G  S  Q  N  *  R  S  K  C  L  V  N  F  L  I  K  N  L  G  L  E  I  E  R  D  R  L  K  L  S  Q  K  K  *  I  E  K  I  I  L  K  E  A  K  H  L  G  C  Q  V  G  A  L  Q  E  N  L  K  A  S  P  L  A  G  H  L  N  W  D  C  F  W  Q  A  *  K  L  T  L  F  E  R  K  N  L  E  :  T  Q  V  S  *  R  S  R  L  Q  S  V  A  L  L  Q  K  L  I  W  *  A  P  P  F  T  V  E  F  L  L  F  S  V  R  I  F  F  N  S  V  F  G  E  *  P  E  N  L  C  S  V  H  S  L  *  R </first_frame>
            <second_frame>  R  K  L  V  T  T  M  A  D  K  M  R  E  E  I  K  I  V  R  T  C  E  E  E  V  C  G  C  T  N  K  K  V  *  E  A  D  Y  E  N  T  P  F  L  R  R  R  Y  V  R  Q  R  F  P  N  K  R  Y  S  P  S  L  D  Y  L  L  L  T  D  S  V  S  L  A  V  L  I  R  Q  C  R  L  I  A  S  S  S  G  L  R  K  *  *  S  V  L  T  P  H  K  S  K  L  G  V  G  Q  T  T  R  R  E  *  D  N  P  E  *  C  M  Y  R  M  K  Q  K  H  N  S  S  M  K  Y  K  A  R  L  V  I  K  G  F  Q  Q  K  A  C  I  N  L  L  R  F  S  P  L  *  L  N  Y  L  L  F  E  L  L  *  N  C  C  S  I  R  F  I  F  R  A  F  R  C  K  D  S  L  S  L  *  *  S  T  *  K  T  C  M  R  S  N  L  K  C  T  Y  R  L  I  R  K  I  W  C  V  D  *  R  R  V  S  M  V  *  N  K  H  Q  D  H  T  *  S  L  A  G  L  *  *  L  L  A  Y  L  V  *  *  *  S  L  F  L  L  Q  E  I  Y  K  F  V  H  H  F  A  P  V  Y  G  *  Y  V  G  D  R  L  K  H  V  W  D  H  K  T  E  G  A  N  V  *  *  I  F  *  *  R  I  W  D  W  K  L  K  E  T  G  *  S  *  V  R  R  N  R  L  K  K  *  F  L  K  R  L  N  I  W  D  A  K  L  V  H  F  K  K  I  *  K  Q  V  L  W  Q  V  T  *  I  G  I  V  F  G  K  R  R  S  *  L  C  L  K  E  R  I  L  R :   H  R  F  H  R  G  A  D  Y  K  V  L  L  Y  C  R  S  *  F  G  E  L  H  P  S  P  W  N  F  F  F  F  Q  L  E  F  F  L  I  Q  F  L  G  N  S  Q  K  I  C  V  L  C  I  P  F  S   </second_frame>
            <third_frame>   G  S  *  *  L  L  W  Q  T  R  *  G  K  K  L  R  *  F  G  H  V  K  R  R  C  A  D  A  P  I  K  R  C  E  R  L  T  M  R  T  H  R  F  C  E  E  G  M  *  D  R  G  F  L  T  N  D  I  L  L  L  L  I  T  C  Y  *  Q  I  Q  S  A  *  L  F  *  *  G  N  A  G  *  *  Q  V  Q  V  D  *  G  N  D  E  V  Y  S  L  H  I  N  Q  S  W  G  L  V  K  L  P  E  G  N  K  T  I  Q  N  N  V  C  T  G  *  N  R  S  I  I  V  Q  *  N  I  K  Q  G  W  *  *  K  V  F  N  K  R  H  V  S  I  Y  *  D  F  L  P  C  D  *  I  T  Y  Y  S  S  C  F  R  I  A  V  A  *  D  L  Y  L  E  H  L  D  V  R  T  A  S  L  Y  D  D  Q  H  E  R  R  V  C  V  A  T  *  S  V  H  T  G  *  *  E  K  Y  G  A  *  T  E  E  E  S  L  W  F  E  T  S  T  K  T  I  L  K  V  W  Q  V  Y  D  D  Y  W  L  T  W  Y  N  D  D  H  C  S  Y  F  K  K  F  I  N  S  Y  I  T  L  L  L  Y  M  D  D  M  L  V  T  G  *  N  M  C  G  I  T  K  L  K  E  Q  M  S  S  E  F  F  D  K  E  F  G  T  G  N  *  K  R  Q  V  E  A  E  S  E  E  I  D  *  K  N  N  S  *  R  G  *  T  F  G  M  P  S  W  C  T  S  R  K  S  E  S  K  S  F  G  R  S  L  E  L  G  L  F  L  A  S  V  E  V  N  F  V  *  K  K  E  S  *   : D  T  G  F  I  E  E  Q  I  T  K  C  C  F  I  A  E  V  D  L  V  S  S  T  L  H  R  G  I  S  S  F  F  S  *  N  F  F  *  F  S  F  W  G  I  A  R  K  F  V  F  C  A  F  P  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17200" e_stop="16564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17200" e_stop="16564" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17200" stop="16564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGCCAGAAAATTTGTGTTCTGTGCATTCCCTTTAGCGCTCCAGTAGAAAGTGTCGGCTCTTGGTTGAAGCCGGTAAATCAAACACTATTTGGGGCCTTTATTTTCAATATAGTAGTAGGTTTATTCTTACTATTTT</gDNA_template>
            <first_frame> K  D  D  Q  E  K  T  T  Y  P  I  K  N  C  V  V  F  H  S  D  N  S  H  N  V  L  S  Y  A  W  L  *  *  R  *  N  V  K  N  F  N  A  K  F  *  *  M  A  I  V  *  R  L  L  T  L  R  D  *  H  E  *  *  S  I  *  R  V  I  E  H  P  Y  L  Y  F  L  S  Y  P  F  I  K  Y  M  F  S  S  Y  A  L  V  *  V  H  *  G  E  R  *  D  L  Y  C  Q  *  Y  T  D  V  L  F  C  G  F  Y  I  D  L  C  Q  Y  R  H  R  F  H  R  G  A  D  Y  K  V  L  L  Y  C  R  S  *  F  G  E  L  H  P  S  P  W  N  F  F  F  F  Q  L  E  F  F  L  I  Q  F  L  G  N  S  Q  K  I  C  V  L  C  I  P  F  S  A  P  V  E  S  V  G  S  W  L  K  P  V  N  Q  T  L  F  G  A  F  I  F  N  I  V  V  G  L  F  L  L  F  </first_frame>
            <second_frame>  K  M  T  K  K  R  Q  H  I  P  S  R  I  V  S  S  F  I  V  T  T  A  I  M  Y  S  L  M  H  G  Y  D  K  D  K  M  *  K  T  S  M  R  N  F  N  K  W  Q  S  Y  K  D  Y  *  L  *  G  I  N  M  N  D  D  P  Y  K  E  S  S  S  I  H  I  C  I  F  F  L  I  R  S  S  S  T  C  F  H  L  M  P  W  F  E  F  I  E  E  N  A  E  T  S  T  V  S  S  I  L  T  F  S  F  V  D  S  I  L  T  Y  A  N  I  D  T  G  F  I  E  E  Q  I  T  K  C  C  F  I  A  E  V  D  L  V  S  S  T  L  H  R  G  I  S  S  F  F  S  *  N  F  F  *  F  S  F  W  G  I  A  R  K  F  V  F  C  A  F  P  L  A  L  Q  *  K  V  S  A  L  G  *  S  R  *  I  K  H  Y  L  G  P  L  F  S  I  *  *  *  V  Y  S  Y  Y  F </second_frame>
            <third_frame>   R  *  P  R  K  D  N  I  S  H  Q  E  L  C  R  L  S  *  *  Q  Q  P  *  C  T  L  L  C  M  V  M  I  K  I  K  C  K  K  L  Q  C  E  I  L  I  N  G  N  R  I  K  I  T  N  F  K  G  L  T  *  M  M  I  H  I  K  S  H  R  A  S  I  F  V  F  S  F  L  S  V  H  Q  V  H  V  F  I  L  C  L  G  L  S  S  L  R  R  T  L  R  P  L  L  S  V  V  Y  *  R  S  L  L  W  I  L  Y  *  P  M  P  I  *  T  Q  V  S  *  R  S  R  L  Q  S  V  A  L  L  Q  K  L  I  W  *  A  P  P  F  T  V  E  F  L  L  F  S  V  R  I  F  F  N  S  V  F  G  E  *  P  E  N  L  C  S  V  H  S  L  *  R  S  S  R  K  C  R  L  L  V  E  A  G  K  S  N  T  I  W  G  L  Y  F  Q  Y  S  S  R  F  I  L  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17031" stop="16729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINMNDDPYKESSSIHICIFFLIRSSSTCFHLMPWFEFIEENAETSTVSSILTFSFVDSILTYANIDTGFIEEQITKCCFIAEVDLVSSTLHRGISSFFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16777" stop="16565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGELHPSPWNFFFFQLEFFLIQFLGNSQKICVLCIPFSAPVESVGSWLKPVNQTLFGAFIFNIVVGLFLLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17105" PGL_stop="17446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17105" e_stop="17248"/>
            <exon e_start="17299" e_stop="17446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="17105" e_stop="17248" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17249" i_stop="17298" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="17299" e_stop="17446" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17105" stop="17248"/>
              <exon start="17299" stop="17446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGACGACACAATTCTTGATGGGATATGTTGTCTTTTCTTGGTCATCTTTCCAGGGAATTAGGTACTGTTTTAGGGCTGAAAAGAGTTACCACAAAGC : AAAATAGAGCACGAGAAAGACTCATTCAATGATGCGCAATGTGAGCTCACTCATTCCAGTTTAGCTCACATTAATACTTTAGAAACATTAATTCAAATAACTTATGGGACATGATCTCTTCAGGAAAGAACTTTAGTAAGAACAAGTC</gDNA_template>
            <first_frame> S  *  P  C  I  R  E  Y  I  M  A  V  V  T  M  K  D  D  T  I  L  D  G  I  C  C  L  F  L  V  I  F  P  G  N  *  V  L  F  *  G  *  K  E  L  P  Q  S  :  K  I  E  H  E  K  D  S  F  N  D  A  Q  C  E  L  T  H  S  S  L  A  H  I  N  T  L  E  T  L  I  Q  I  T  Y  G  T  *  S  L  Q  E  R  T  L  V  R  T  S  </first_frame>
            <second_frame>  H  N  H  A  *  E  S  T  L  W  L  L  S  L  *  K  T  T  Q  F  L  M  G  Y  V  V  F  S  W  S  S  F  Q  G  I  R  Y  C  F  R  A  E  K  S  Y  H  K  A :   K  *  S  T  R  K  T  H  S  M  M  R  N  V  S  S  L  I  P  V  *  L  T  L  I  L  *  K  H  *  F  K  *  L  M  G  H  D  L  F  R  K  E  L  *  *  E  Q  V </second_frame>
            <third_frame>   I  T  M  H  K  R  V  H  Y  G  C  C  H  Y  E  R  R  H  N  S  *  W  D  M  L  S  F  L  G  H  L  S  R  E  L  G  T  V  L  G  L  K  R  V  T  T  K   : Q  N  R  A  R  E  R  L  I  Q  *  C  A  M  *  A  H  S  F  Q  F  S  S  H  *  Y  F  R  N  I  N  S  N  N  L  W  D  M  I  S  S  G  K  N  F  S  K  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21494" PGL_stop="20527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21494" e_stop="20527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="21494" e_stop="20527" e_length="968"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21494" stop="20527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCT</gDNA_template>
            <first_frame> H  L  L  P  P  I  N  L  P  F  D  T  R  *  V  C  Q  T  E  K  P  *  G  T  F  *  E  I  Y  T  N  R  N  C  L  Y  R  S  S  L  K  M  A  N  S  S  R  R  P  S  G  P  V  L  L  K  S  A  F  E  R  S  I  S  P  T  G  R  F  C  N  T  T  T  T  A  T  D  A  M  S  F  A  S  Y  S  N  S  S  F  Y  S  S  P  S  T  G  C  F  N  R  S  A  S  P  T  R  V  N  L  H  A  L  A  P  V  N  S  S  P  S  V  R  F  S  I  D  R  S  I  S  P  R  R  S  M  A  V  S  Q  R  D  Q  V  V  R  K  Q  I  P  K  R  T  C  L  C  S  P  T  T  H  P  G  S  F  R  C  S  M  H  K  N  V  K  N  T  P  S  I  S  Y  S  P  S  R  L  N  A  R  R  S  A  M  T  N  S  L  V  R  I  C  S  V  E  G  D  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  H  Q  R  R  R  G  D  F  Q  P  R  P  S  R  L  S  R  M  S  K  A  D  N  L  *  N  F  R  G  N  R  L  V  I  F  I  Y  *  L  R  L  I  S  *  E  F  S  G  G  G  V  *  S  W  L  R  F  L  L  L  R  *  N  E  S  C  R  A  I  L  M  Q  Y  G  S  S  R  I  L  P  C  T  Y  G  F  V  A  V  T  D  C  N  *  K  D  N  L  D  F  *  N   </first_frame>
            <second_frame>  I  F  S  H  L  *  I  Y  P  S  T  L  A  R  F  A  K  L  K  S  L  R  A  L  F  K  R  S  I  Q  T  E  I  V  Y  I  D  L  H  *  K  W  R  I  P  L  E  G  R  V  G  Q  C  C  L  N  R  R  L  R  G  Q  S  H  L  P  A  G  S  V  T  P  P  P  Q  Q  L  M  R  C  R  S  L  R  T  A  T  L  A  F  I  P  L  R  R  P  A  V  S  T  D  R  L  L  R  R  A  *  I  F  T  L  W  R  R  *  I  L  R  L  A  L  G  S  P  L  T  D  P  F  L  L  G  V  P  W  R  C  L  N  V  I  R  W  F  G  S  R  S  R  R  G  R  A  Y  A  H  L  R  R  I  L  V  R  S  G  V  V  C  I  R  M  *  R  I  L  L  R  F  R  I  P  L  A  D  *  M  H  G  D  R  R  *  Q  I  H  W  C  V  S  V  L  L  K  V  I  *  *  N  E  L  W  L  L  L  L  G  H  R  R  I  I  R  D  V  E  V  T  F  N  R  V  L  A  G  F  P  E  C  P  K  L  I  T  C  E  I  S  V  V  T  G  W  *  F  S  Y  I  N  *  G  S  S  L  E  S  F  P  A  A  A  S  D  P  G  C  G  S  Y  Y  S  G  E  M  K  A  V  G  Q  F  *  C  S  M  E  V  V  E  F  S  L  V  H  M  V  L  L  Q  *  L  I  A  I  E  R  T  I  W  T  F  K  I  </second_frame>
            <third_frame>   S  S  P  T  Y  K  F  T  L  R  H  S  L  G  L  P  N  *  K  A  L  G  H  F  L  R  D  L  Y  K  Q  K  L  F  I  *  I  F  T  E  N  G  E  F  L  *  K  A  E  W  A  S  V  A  *  I  G  V  *  E  V  N  L  T  Y  R  Q  V  L  *  H  H  H  H  S  N  *  C  D  V  V  R  F  V  Q  Q  L  *  L  L  F  L  S  V  D  R  L  F  Q  P  I  G  F  S  D  A  R  E  S  S  R  S  G  A  G  E  F  F  A  *  R  *  V  L  H  *  Q  I  H  F  S  S  A  F  H  G  G  V  S  T  *  S  G  G  S  E  A  D  P  E  E  D  V  L  M  L  T  Y  D  A  S  W  F  V  Q  V  *  Y  A  *  E  C  E  E  Y  S  F  D  F  V  F  P  *  P  I  E  C  T  E  I  G  D  D  K  F  T  G  A  Y  L  F  C  *  R  *  F  S  E  T  S  F  G  C  S  Y  *  A  I  V  A  S  S  E  T  S  R  *  L  S  T  A  S  *  P  A  F  Q  N  V  Q  S  *  *  P  V  K  F  P  W  *  Q  V  G  D  F  H  I  L  T  E  A  H  L  L  R  V  F  R  R  R  R  L  I  L  A  A  V  L  T  T  P  V  K  *  K  L  *  G  N  F  D  A  V  W  K  *  *  N  S  P  L  Y  I  W  F  C  C  S  N  *  L  Q  L  K  G  Q  F  G  L  L  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21416" stop="20757"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIYTNRNCLYRSSLKMANSSRRPSGPVLLKSAFERSISPTGRFCNTTTTATDAMSFASYSNSSFYSSPSTGCFNRSASPTRVNLHALAPVNSSPSVRFSIDRSISPRRSMAVSQRDQVVRKQIPKRTCLCSPTTHPGSFRCSMHKNVKNTPSISYSPSRLNARRSAMTNSLVRICSVEGDLVKRALAALIRPSSHHQRRRGDFQPRPSRLSRMSKADNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30883" PGL_stop="29833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30883" e_stop="30332"/>
            <exon e_start="30057" e_stop="29833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.991"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30883" e_stop="30332" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="30331" i_stop="30058" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="30057" e_stop="29833" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30883" stop="30332"/>
              <exon start="30057" stop="29833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTACATTACTGTATTATTTTGTTGTAGTTTTTGTTTTAGAATGATTTGTCATGCTTTCTATAGTATTTTTGTTATAACTTTTTCGATCTACTTTGAACTGTTTTTCTCATGTCGGAGTGTCTATTGAAAACAACCTTTAACATACTTCATGATATCTTAATTTGTGAGATTACACTGTGTATGCTCAGAGGCGGAGCTAGGTGGGGTTCTGGGTTCGGACGAATCCAGTAGCTTTTCCATAGACCCTATTAATATATGTATATTAATTTGTGAACTCCTAACAAAATTGATTGAAGAAAATTTAGAACTCCCAAACTCTTAATCCTGGCTTCGCCTCTGTGTATGCTGTTGCTGACTAAATGAGACATTTTTAGATGAATTTAGGGAGGGAAGAAATGAGGTATTTGCTGAAGGTCCCAATATAGTTGAGGCTCCAGTGCAGAGCTCATCGCTTATATTGGCTGCTGAGAGAACATACAGAAAAGACCCTCTCAATGGTTTTAAGAGATATAATGGAGGATGGAACATCGATGACCGCCATTACTGGGCT : TCTGTTGCATATACAGCCTTTCCGTTCTTTATCACCGCGTTGATCTGGTTTGTGATCTTTGGACTTTGCTTATTGTTCATCTTTGTCTGCTCTCGTTGCTGCAAAAGAGAACCTTATGGATACTCTTCAATGGCTTATGCTCTCTCCCTCATATTCCTTGCGCTTTTTACCATTGCTGCAATGTATGCTCTCTCTCCCTTCTCCTCACGAAATGGATGACTTTCC</gDNA_template>
            <first_frame> T  Y  I  T  V  L  F  C  C  S  F  C  F  R  M  I  C  H  A  F  Y  S  I  F  V  I  T  F  S  I  Y  F  E  L  F  F  S  C  R  S  V  Y  *  K  Q  P  L  T  Y  F  M  I  S  *  F  V  R  L  H  C  V  C  S  E  A  E  L  G  G  V  L  G  S  D  E  S  S  S  F  S  I  D  P  I  N  I  C  I  L  I  C  E  L  L  T  K  L  I  E  E  N  L  E  L  P  N  S  *  S  W  L  R  L  C  V  C  C  C  *  L  N  E  T  F  L  D  E  F  R  E  G  R  N  E  V  F  A  E  G  P  N  I  V  E  A  P  V  Q  S  S  S  L  I  L  A  A  E  R  T  Y  R  K  D  P  L  N  G  F  K  R  Y  N  G  G  W  N  I  D  D  R  H  Y  W  A  :  S  V  A  Y  T  A  F  P  F  F  I  T  A  L  I  W  F  V  I  F  G  L  C  L  L  F  I  F  V  C  S  R  C  C  K  R  E  P  Y  G  Y  S  S  M  A  Y  A  L  S  L  I  F  L  A  L  F  T  I  A  A  M  Y  A  L  S  P  F  S  S  R  N  G  *  L  S </first_frame>
            <second_frame>  L  T  L  L  Y  Y  F  V  V  V  F  V  L  E  *  F  V  M  L  S  I  V  F  L  L  *  L  F  R  S  T  L  N  C  F  S  H  V  G  V  S  I  E  N  N  L  *  H  T  S  *  Y  L  N  L  *  D  Y  T  V  Y  A  Q  R  R  S  *  V  G  F  W  V  R  T  N  P  V  A  F  P  *  T  L  L  I  Y  V  Y  *  F  V  N  S  *  Q  N  *  L  K  K  I  *  N  S  Q  T  L  N  P  G  F  A  S  V  Y  A  V  A  D  *  M  R  H  F  *  M  N  L  G  R  E  E  M  R  Y  L  L  K  V  P  I  *  L  R  L  Q  C  R  A  H  R  L  Y  W  L  L  R  E  H  T  E  K  T  L  S  M  V  L  R  D  I  M  E  D  G  T  S  M  T  A  I  T  G  L :   L  L  H  I  Q  P  F  R  S  L  S  P  R  *  S  G  L  *  S  L  D  F  A  Y  C  S  S  L  S  A  L  V  A  A  K  E  N  L  M  D  T  L  Q  W  L  M  L  S  P  S  Y  S  L  R  F  L  P  L  L  Q  C  M  L  S  L  P  S  P  H  E  M  D  D  F   </second_frame>
            <third_frame>   L  H  Y  C  I  I  L  L  *  F  L  F  *  N  D  L  S  C  F  L  *  Y  F  C  Y  N  F  F  D  L  L  *  T  V  F  L  M  S  E  C  L  L  K  T  T  F  N  I  L  H  D  I  L  I  C  E  I  T  L  C  M  L  R  G  G  A  R  W  G  S  G  F  G  R  I  Q  *  L  F  H  R  P  Y  *  Y  M  Y  I  N  L  *  T  P  N  K  I  D  *  R  K  F  R  T  P  K  L  L  I  L  A  S  P  L  C  M  L  L  L  T  K  *  D  I  F  R  *  I  *  G  G  K  K  *  G  I  C  *  R  S  Q  Y  S  *  G  S  S  A  E  L  I  A  Y  I  G  C  *  E  N  I  Q  K  R  P  S  Q  W  F  *  E  I  *  W  R  M  E  H  R  *  P  P  L  L  G   : F  C  C  I  Y  S  L  S  V  L  Y  H  R  V  D  L  V  C  D  L  W  T  L  L  I  V  H  L  C  L  L  S  L  L  Q  K  R  T  L  W  I  L  F  N  G  L  C  S  L  P  H  I  P  C  A  F  Y  H  C  C  N  V  C  S  L  S  L  L  L  T  K  W  M  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30526" stop="30332"/>
                    <exon start="30057" stop="29839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNETFLDEFREGRNEVFAEGPNIVEAPVQSSSLILAAERTYRKDPLNGFKRYNGGWNIDDRHYWASVAYTAFPFFITALIWFVIFGLCLLFIFVCSRCCKREPYGYSSMAYALSLIFLALFTIAAMYALSPFSSRNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48623" PGL_stop="40949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48623" e_stop="48572"/>
            <exon e_start="47086" e_stop="46794"/>
            <exon e_start="44430" e_stop="44064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.940" e_score="0.981"/>
          <exon-intron don_prob="0.996" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="48623" e_stop="48572" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.940">
            <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47086" e_stop="46794" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.820">
            <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="44430" e_stop="44064" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG : GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATT</gDNA_template>
            <first_frame> T  S  L  S  C  S  K  *  S  L  Y  *  P  C  S  L  S   : G  K  W  T  K  S  C  *  W  W  K  S  A  S  Q  L  D  S  I  T  I  *  I  S  M  E  *  H  S  N  G  C  F  E  G  N  T  S  I  S  C  S  W  W  R  S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  A  F  F  S  T  S  F  L  P  T  G  Y  S  K  T  *  S  W  E  R  *  L  V  G  R  V  C  S  F  R  T  F  Y  L  H  T  F  Q  Q  R  G  A  K  S  K  Q  *  A  G  A  D  L  G  C  G  *  S  S  T  S  V  C  *  V  G  K  S  L  W  F  *  F  E  G  R  *  Y  I  S  I  C  K  F  W  E  F  *  C  F  S  H  Q  C  *  S  A  S  *  F  L  Q  S  D  C  I  I  W  N  S  Y  *  S  R  F  I  K  N  S  R  M  H  </first_frame>
            <second_frame>  Q  A  Y  R  V  Q  S  R  A  S  T  D  H  A  L  Y  Q  :  E  S  G  Q  N  H  V  D  G  G  K  A  H  H  N  W  I  V  S  L  F  E  S  Q  W  S  S  I  Q  M  V  V  L  R  E  I  L  L  S  A  V  R  G  G  D  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   L  H  S  F  P  L  H  S  S  Q  Q  D  I  V  K  R  N  H  G  R  D  D  W  W  A  G  S  A  P  S  G  P  F  I  Y  T  P  F  S  K  G  E  P  S  Q  S  S  K  Q  E  L  I  W  V  V  G  E  A  V  Q  V  F  V  E  L  A  N  P  C  G  F  D  L  K  V  D  S  I  Y  L  S  V  N  S  G  N  F  D  A  F  P  I  S  V  S  L  P  P  N  S  S  K  V  I  A  L  S  G  I  P  T  E  V  G  S  L  K  I  P  G  C  I </second_frame>
            <third_frame>   K  L  I  V  F  K  V  E  P  L  L  T  M  L  F  I  R :   K  V  D  K  I  M  L  M  V  E  K  R  I  T  I  G  *  Y  H  Y  L  N  L  N  G  V  A  F  K  W  L  F  *  G  K  Y  F  Y  Q  L  F  V  V  E  I  L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  C  I  L  F  H  F  I  P  P  N  R  I  *  *  N  V  I  M  G  E  M  I  G  G  Q  G  L  L  L  Q  D  L  L  F  T  H  L  S  A  K  G  S  Q  V  K  A  V  S  R  S  *  F  G  L  W  V  K  Q  Y  K  C  L  L  S  W  Q  I  L  V  V  L  I  *  R  S  I  V  Y  I  Y  L  *  I  L  G  I  L  M  L  F  P  S  V  L  V  C  L  L  I  P  P  K  *  L  H  Y  L  E  F  L  L  K  *  V  H  *  K  F  Q  D  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48622" stop="48572"/>
                    <exon start="47086" stop="46794"/>
                    <exon start="44430" stop="44064"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAYRVQSRASTDHALYQESGQNHVDGGKAHHNWIVSLFESQWSSIQMVVLREILLSAVRGGDPLTAWSAAARLLRSYYPLITPAGQNGLASALSNASERLPSGTRCADPALPFIRLHSFPLHSSQQDIVKRNHGRDDWWAGSAPSGPFIYTPFSKGEPSQSSKQELIWVVGEAVQVFVELANPCGFDLKVDSIYLSVNSGNFDAFPISVSLPPNSSKVIALSGIPTEVGSLKIPGCI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46954" e_stop="46794"/>
            <exon e_start="42590" e_stop="41682"/>
            <exon e_start="41429" e_stop="40949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46954" e_stop="46794" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="42590" e_stop="41682" e_length="909"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="41429" e_stop="40949" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46954" stop="46794"/>
              <exon start="42590" stop="42090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42126" stop="41682"/>
              <exon start="41429" stop="40949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCTG</gDNA_template>
            <first_frame> D  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   S  T  Y  L  C  W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D  Y  V  I  S  L  L  K  C  P  *  F  T  K  P  G  E  T  F  Q  P  Q  L  F  V  E  L  V  I  C  T  S  Y  F  L  *  F  L  L  I  *  R  S  I  L  F  R  R  K  L  Y  H  S  V  S  N  *  Y  T  I  G  F  Y  S  D  L  *  S  Y  I  I  Q  *  R  A  G  H  L  F  L  Q  F  I  A  L  *  F  C  C  L </first_frame>
            <second_frame>  I  L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  P  L  T  Y  A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G  T  M  *  Y  P  Y  *  S  V  H  S  L  L  N  Q  V  K  L  S  S  L  N  Y  L  *  N  L  L  F  A  L  R  I  S  C  N  S  S  L  Y  R  G  P  F  C  L  G  E  N  C  I  T  Q  F  P  I  D  I  Q  *  D  S  T  V  I  C  K  A  I  L  F  N  E  E  L  D  I  Y  S  C  N  L  *  L  Y  D  F  V  A   </second_frame>
            <third_frame>   S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  H  L  L  M  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  L  C  D  I  L  I  E  V  S  I  V  Y  *  T  R  *  N  F  P  A  S  T  I  C  R  T  C  Y  L  H  F  V  F  L  V  I  P  P  Y  I  E  V  H  F  V  *  E  K  T  V  S  L  S  F  Q  L  I  Y  N  R  I  L  Q  *  F  V  K  L  Y  Y  S  M  K  S  W  T  F  I  P  A  I  Y  S  F  M  I  L  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46794" stop="41682"/>
                    <exon start="41429" stop="41209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPLTYAGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNGTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45126" e_stop="44498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45126" e_stop="44498" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45126" stop="44498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGA</gDNA_template>
            <first_frame> F  Q  S  K  H  P  C  I  C  K  F  *  V  K  C  S  M  L  N  Q  K  Y  V  G  D  A  G  I  S  S  W  F  I  V  L  D  T  A  N  *  I  L  L  E  R  *  S  N  C  L  C  K  G  W  L  Y  F  S  V  Y  C  I  A  H  Y  L  L  D  H  A  *  K  M  L  K  L  P  V  *  R  P  I  H  V  L  T  I  S  S  A  Y  S  *  E  F  T  D  K  L  I  K  S  E  E  F  *  F  H  Q  E  *  P  F  F  Y  H  K  N  Y  S  F  N  V  F  L  *  L  T  Y  Y  Y  *  W  W  *  T  C  K  R  L  F  G  T  S  F  T  S  L  S  R  K  K  *  I  *  S  G  S  I  F  I  V  P  S  D  F  T  I  I  S  F  A  V  S  E  *  S  S  R  I  L  I  L  *  I  L  W  Y  L  Q  L  L  A  Y  F  F  P  Q  T  D  T  G  F  M  V  S  A  I  A   </first_frame>
            <second_frame>  S  N  P  S  I  H  V  Y  V  N  F  E  *  N  V  L  C  *  I  R  S  M  L  V  M  L  V  F  L  H  G  L  L  Y  *  T  L  L  T  R  S  C  L  K  D  N  Q  I  A  F  V  K  A  G  C  T  S  A  F  I  V  L  H  I  T  Y  *  I  M  P  E  R  C  S  N  Y  L  F  E  G  Q  Y  M  Y  *  P  Y  L  Q  H  I  V  R  S  L  L  I  S  S  *  N  Q  K  N  S  N  S  I  R  N  N  L  F  F  I  I  R  T  I  L  L  M  Y  S  C  S  *  H  T  I  T  N  G  G  K  L  A  K  D  Y  L  E  L  L  S  L  V  S  L  E  R  S  K  F  N  L  V  R  S  S  *  F  L  Q  I  L  L  L  L  V  L  L  F  Q  N  D  L  P  A  Y  *  Y  S  R  F  Y  G  I  C  S  C  W  L  I  S  F  L  R  L  I  L  V  L  W  C  L  Q  L  L  </second_frame>
            <third_frame>   P  I  Q  A  S  M  Y  M  *  I  L  S  E  M  F  Y  A  E  S  E  V  C  W  *  C  W  Y  F  F  M  V  Y  C  I  R  H  C  *  L  D  L  A  *  K  I  I  K  L  P  L  *  R  L  V  V  L  Q  R  L  L  Y  C  T  L  L  T  R  S  C  L  K  D  A  Q  I  T  C  L  K  A  N  T  C  I  D  H  I  F  S  I  *  L  G  V  Y  *  *  A  H  K  I  R  R  I  L  I  P  S  G  I  T  F  F  L  S  *  E  L  F  F  *  C  I  P  V  A  N  I  L  L  L  M  V  V  N  L  Q  K  T  I  W  N  F  F  H  *  S  L  *  K  E  V  N  L  I  W  F  D  L  H  S  S  F  R  F  Y  Y  Y  *  F  C  C  F  R  M  I  F  P  H  T  D  T  L  D  F  M  V  S  A  V  A  G  L  F  L  S  S  D  *  Y  W  F  Y  G  V  C  N  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="55182" PGL_stop="48807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55182" e_stop="54641"/>
            <exon e_start="53262" e_stop="53043"/>
            <exon e_start="52938" e_stop="52756"/>
            <exon e_start="51167" e_stop="51058"/>
            <exon e_start="49898" e_stop="49839"/>
            <exon e_start="48857" e_stop="48807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55182" e_stop="54641" e_length="542"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53262" e_stop="53043" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52938" e_stop="52756" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51167" e_stop="51058" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49898" e_stop="49839" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48857" e_stop="48807" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55182" stop="54641"/>
              <exon start="53262" stop="53043"/>
              <exon start="52938" stop="52756"/>
              <exon start="51167" stop="51058"/>
              <exon start="49898" stop="49839"/>
              <exon start="48857" stop="48807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCTCAATTGTTGGGCTTAAATCAATACTCCGTCCTATGCTTAATATCTGATCTAAAAACCGCTTCGCCGGAGCTGCCAATCTCCACTTTCCATCTTCTCCGGCGATCATTTCCCGGCAGAGTTCGAAATGGAACCCGACGTGAGCATCGAAACAAGTTGTATGATCCGAGTAGCAGTTCTACCAATCGGATCTATAGCAATCCCTTTATTCCGCGACTACACTTCTATGCTAGTTCGTCACTACACAGTATCATTATCTTCCATCAGTTCATTCTACACAGAACATCAAAAATCTCCTTTCGCTCATCAACCTTGGGATTCCGGTAGCCTACGGTTCAAATACATGGTCGGTGGTTCACCGGCTAGTCCTTGGGAAGATTTTCAATCCAATCGGAAAATTTTTGCCGTTATAGGCATTTGTCACTGTCCTTCTTCGCCTGATCTGCATTCTGTCATGGATCAGTTTGTGACCGCATGTAAGAGTTACTCGTCTTCAGTTGTTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG : CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG : GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG : ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG : AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG : GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</gDNA_template>
            <first_frame> N  F  S  I  V  G  L  K  S  I  L  R  P  M  L  N  I  *  S  K  N  R  F  A  G  A  A  N  L  H  F  P  S  S  P  A  I  I  S  R  Q  S  S  K  W  N  P  T  *  A  S  K  Q  V  V  *  S  E  *  Q  F  Y  Q  S  D  L  *  Q  S  L  Y  S  A  T  T  L  L  C  *  F  V  T  T  Q  Y  H  Y  L  P  S  V  H  S  T  Q  N  I  K  N  L  L  S  L  I  N  L  G  I  P  V  A  Y  G  S  N  T  W  S  V  V  H  R  L  V  L  G  K  I  F  N  P  I  G  K  F  L  P  L  *  A  F  V  T  V  L  L  R  L  I  C  I  L  S  W  I  S  L  *  P  H  V  R  V  T  R  L  Q  L  F  S  G  A  S  H  F  A  P  V  T  L  S :   *  R  M  K  A  S  R  G  A  T  *  F  C  F  P  L  L  I  V  K  L  K  N  S  T  C  K  L  *  C  K  I  L  L  P  H  C  *  *  N  L  K  N  Q  F  F  K  Q  S  L  V  E  L  F  S  R  H  L  *  I  P  K  R  V  L  A  Q  R  R  F  I  F  *  :  V  I  K  A  K  K  R  R  L  G  R  A  Q  K  T  I  G  D  Y  C  L  L  A  G  S  P  V  D  A  N  A  H  Y  T  T  S  L  E  L  A  R  L  T  G  D  F  F  W  Y  A  G  A  M  E  G  S  V  C  A  L  L  :  I  D  Q  M  G  Q  R  D  Q  F  L  D  D  E  V  K  H  R  Y  N  N  V  I  L  H  Y  R  K  S  F  I  Q  D  N  A  Q  R :   V  S  P  L  S  F  E  L  E  A  T  L  K  L  A  R  Y  L  C  R :   K  E  L  A  K  E  V  V  D  L  L  T  T  A  A  D   </first_frame>
            <second_frame>  I  S  Q  L  L  G  L  N  Q  Y  S  V  L  C  L  I  S  D  L  K  T  A  S  P  E  L  P  I  S  T  F  H  L  L  R  R  S  F  P  G  R  V  R  N  G  T  R  R  E  H  R  N  K  L  Y  D  P  S  S  S  S  T  N  R  I  Y  S  N  P  F  I  P  R  L  H  F  Y  A  S  S  S  L  H  S  I  I  I  F  H  Q  F  I  L  H  R  T  S  K  I  S  F  R  S  S  T  L  G  F  R  *  P  T  V  Q  I  H  G  R  W  F  T  G  *  S  L  G  R  F  S  I  Q  S  E  N  F  C  R  Y  R  H  L  S  L  S  F  F  A  *  S  A  F  C  H  G  S  V  C  D  R  M  *  E  L  L  V  F  S  C  S  A  V  L  R  I  L  P  R  *  L  S   : A  R  G  *  K  L  Q  G  E  Q  L  N  F  V  S  P  C  *  S  S  N  S  R  I  P  L  A  N  Y  D  A  R  Y  C  C  L  I  V  D  E  I  *  K  I  S  S  S  S  R  V  W  W  N  Y  S  Q  D  T  F  R  F  P  S  E  S  *  L  R  G  G  S  Y  F  R :   S  S  R  L  K  N  E  D  W  A  V  H  R  K  L  S  G  I  T  V  C  W  Q  G  H  L  L  M  L  M  P  I  I  Q  L  H  W  S  L  L  D  *  L  E  T  S  F  G  M  L  G  Q  W  K  A  V  F  V  L  C  * :   *  I  K  W  V  R  G  I  N  F  *  M  M  R  S  S  T  V  T  I  M  S  F  C  I  T  E  S  H  L  F  K  T  M  L  K   : E  F  L  L  *  V  S  S  L  R  L  L  S  N  *  H  D  T  S  A   : G  R  S  W  P  R  K  W  L  I  C  *  L  R  L  L  M  </second_frame>
            <third_frame>   F  L  N  C  W  A  *  I  N  T  P  S  Y  A  *  Y  L  I  *  K  P  L  R  R  S  C  Q  S  P  L  S  I  F  S  G  D  H  F  P  A  E  F  E  M  E  P  D  V  S  I  E  T  S  C  M  I  R  V  A  V  L  P  I  G  S  I  A  I  P  L  F  R  D  Y  T  S  M  L  V  R  H  Y  T  V  S  L  S  S  I  S  S  F  Y  T  E  H  Q  K  S  P  F  A  H  Q  P  W  D  S  G  S  L  R  F  K  Y  M  V  G  G  S  P  A  S  P  W  E  D  F  Q  S  N  R  K  I  F  A  V  I  G  I  C  H  C  P  S  S  P  D  L  H  S  V  M  D  Q  F  V  T  A  C  K  S  Y  S  S  S  V  V  Q  R  C  F  A  F  C  P  G  D  S  Q  :  L  E  D  E  S  F  K  G  S  N  L  I  L  F  P  P  A  D  R  Q  T  Q  E  F  H  L  Q  T  M  M  Q  D  I  A  A  S  L  L  M  K  F  E  K  S  V  L  Q  A  E  S  G  G  T  I  L  K  T  P  L  D  S  Q  A  S  L  S  S  E  E  V  H  I  L   : G  H  Q  G  *  K  T  K  I  G  P  C  T  E  N  Y  R  G  L  L  S  V  G  R  V  T  C  *  C  *  C  P  L  Y  N  F  I  G  A  C  *  I  D  W  R  L  L  L  V  C  W  G  N  G  R  Q  C  L  C  S  V   : D  R  S  N  G  S  E  G  S  I  S  R  *  *  G  Q  A  P  L  Q  *  C  H  F  A  L  Q  K  V  I  Y  S  R  Q  C  S  K  :  S  F  S  S  K  F  R  A  *  G  Y  S  Q  I  S  T  I  P  L  Q  :  E  G  V  G  Q  G  S  G  *  F  V  D  Y  G  C  *  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55123" stop="54641"/>
                    <exon start="53262" stop="53043"/>
                    <exon start="52938" stop="52925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPLRRSCQSPLSIFSGDHFPAEFEMEPDVSIETSCMIRVAVLPIGSIAIPLFRDYTSMLVRHYTVSLSSISSFYTEHQKSPFAHQPWDSGSLRFKYMVGGSPASPWEDFQSNRKIFAVIGICHCPSSPDLHSVMDQFVTACKSYSSSVVQRCFAFCPGDSQLEDESFKGSNLILFPPADRQTQEFHLQTMMQDIAASLLMKFEKSVLQAESGGTILKTPLDSQASLSSEEVHILGHQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52938" stop="52756"/>
                    <exon start="51167" stop="51058"/>
                    <exon start="49898" stop="49839"/>
                    <exon start="48857" stop="48809"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYTTSLELARLTGDFFWYAGAMEGSVCALLIDQMGQRDQFLDDEVKHRYNNVILHYRKSFIQDNAQRVSPLSFELEATLKLARYLCRKELAKEVVDLLTTAAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59758" PGL_stop="62840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59758" e_stop="59807"/>
            <exon e_start="61659" e_stop="61835"/>
            <exon e_start="61926" e_stop="62840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.958" e_score="0.900"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.955"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="59758" e_stop="59807" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.958">
            <gDNA_intron_boundary i_start="59808" i_stop="61658" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="61659" e_stop="61835" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="61926" e_stop="62840" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59758" stop="59807"/>
              <exon start="61659" stop="61835"/>
              <exon start="61926" stop="62207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62157" stop="62840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTTGTTATAGTAATTGATTTTCCAGTTTTTGATTTCTTCAGCTCAG : AACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG : ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAGTAAAGATTCCCTAAGTAGAAAGAACTCGGGAAGGTGAGATTGTGGAGGGTCAAAACATGTATGCAGTCTAAAGCCCCTTCCCTCATCAGGTTTTATTGTGCTATCCACATATATCAATAAACAACAATTTGAGATGCTCTTGCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAAAGAGTAAACGATGAACAGAAGACGACACAAGCAGTTTACGTGGAAACCTCCTTGCTCAAGGGAGTAAAACCACGACCTGTTGCACAGGATTTTCAACTGTTTCTCTAATCTT</gDNA_template>
            <first_frame> V  F  C  Y  S  N  *  F  S  S  F  *  F  L  Q  L  R :   T  C  R  L  R  R  V  R  L  S  K  R  H  L  L  L  H  H  H  A  E  K  R  S  L  K  V  P  H  F  W  R  M  *  R  I  I  L  M  S  L  Y  M  P  Q  W  M  N  T  H  L  A  L  R  R  P  S  I  R :   C  L  G  C  L  K  L  S  L  K  E  M  L  K  Q  R  R  L  R  A  H  F  L  S  K  L  L  Y  L  S  K  D  S  L  S  R  K  N  S  G  R  *  D  C  G  G  S  K  H  V  C  S  L  K  P  L  P  S  S  G  F  I  V  L  S  T  Y  I  N  K  Q  Q  F  E  M  L  L  P  E  K  L  C  C  F  L  H  L  L  V  L  P  N  I  R  H  V  *  I  N  K  I  N  G  H  N  N  L  R  C  S  C  L  R  S  L  A  A  F  Y  I  C  L  F  Y  H  T  L  D  M  S  R  *  T  K  *  M  G  T  T  I  *  E  A  L  A  *  E  V  M  L  L  F  M  S  V  G  F  A  T  H  *  T  C  L  D  F  F  F  K  K  K  T  N  G  H  Y  N  N  L  M  N  P  H  S  D  C  W  I  L  C  F  M  V  C  A  L  P  F  L  S  T  S  N  *  L  *  L  W  T  I  L  Y  A  C  S  L  V  T  C  V  F  R  D  I  I  R  G  F  D  P  G  L  D  G  G  V  F  K  I  R  L  *  W  C  P  D  K  M  Y  A  S  T  I  S  Q  R  T  R  S  L  N  S  T  R  T  G  I  K  S  K  R  *  T  E  D  D  T  S  S  L  R  G  N  L  L  A  Q  G  S  K  T  T  T  C  C  T  G  F  S  T  V  S  L  I   </first_frame>
            <second_frame>  Y  F  V  I  V  I  D  F  P  V  F  D  F  F  S  S   : E  H  V  D  *  E  E  S  A  *  A  N  V  T  C  C  C  I  I  M  P  K  K  E  V  *  K  C  H  I  F  G  G  C  E  G  S  Y  *  *  V  Y  T  C  L  N  G  *  T  R  I  L  L  *  E  D  H  Q  *   : D  V  W  D  V  *  N  C  R  *  K  K  C  *  S  K  G  G  *  E  L  T  S  S  P  N  C  C  I  *  V  K  I  P  *  V  E  R  T  R  E  G  E  I  V  E  G  Q  N  M  Y  A  V  *  S  P  F  P  H  Q  V  L  L  C  Y  P  H  I  S  I  N  N  N  L  R  C  S  C  L  R  S  C  A  A  F  Y  I  C  W  F  Y  Q  T  L  D  M  S  R  *  T  K  *  M  G  T  T  I  *  D  A  L  A  *  E  V  L  L  L  F  T  S  V  C  F  T  T  H  *  T  C  L  D  K  Q  N  K  W  V  Q  Q  F  E  R  L  L  P  K  K  L  C  C  F  L  C  L  L  V  L  P  H  I  R  H  V  *  I  F  F  L  K  K  K  L  M  G  I  T  I  T  *  *  I  L  I  V  I  V  G  S  F  V  L  W  F  V  L  F  L  F  C  R  H  L  T  S  F  S  F  G  P  Y  S  M  L  V  L  *  L  H  A  Y  L  E  I  S  S  E  G  L  I  Q  A  W  M  V  E  F  S  K  Y  A  C  N  G  A  L  I  R  C  M  R  P  R  S  V  N  G  P  G  P  L  T  Q  Q  E  Q  E  *  R  V  N  D  E  Q  K  T  T  Q  A  V  Y  V  E  T  S  L  L  K  G  V  K  P  R  P  V  A  Q  D  F  Q  L  F  L  *  S  </second_frame>
            <third_frame>   I  L  L  *  *  L  I  F  Q  F  L  I  S  S  A  Q  :  N  M  S  T  E  K  S  P  L  E  Q  T  S  P  A  V  A  S  S  C  R  K  K  K  S  E  S  A  T  F  L  E  D  V  K  D  H  I  D  E  F  I  H  A  S  M  D  E  H  A  S  C  F  K  K  T  I  N  K  :  M  F  G  M  S  K  I  V  A  E  R  N  A  E  A  K  E  V  E  S  S  L  P  L  Q  T  V  V  S  E  *  R  F  P  K  *  K  E  L  G  K  V  R  L  W  R  V  K  T  C  M  Q  S  K  A  P  S  L  I  R  F  Y  C  A  I  H  I  Y  Q  *  T  T  I  *  D  A  L  A  *  E  V  V  L  L  F  T  S  V  G  F  T  K  H  *  T  C  L  D  K  Q  N  K  W  A  Q  Q  F  E  M  L  L  P  K  K  S  C  C  F  L  H  L  S  V  L  P  H  I  R  H  V  *  I  N  K  I  N  G  Y  N  N  L  R  G  S  C  L  R  S  Y  A  A  F  Y  V  C  W  F  C  H  T  L  D  M  S  R  F  F  F  *  K  K  N  *  W  A  L  Q  *  P  D  E  S  S  *  *  L  L  D  P  L  F  Y  G  L  C  S  S  F  S  V  D  I  *  L  A  L  A  L  D  H  T  L  C  L  F  S  S  Y  M  R  I  *  R  Y  H  P  R  V  *  S  R  L  G  W  W  S  F  Q  N  T  L  V  M  V  P  *  *  D  V  C  V  H  D  Q  S  T  D  Q  V  P  *  L  N  K  N  R  N  K  E  *  T  M  N  R  R  R  H  K  Q  F  T  W  K  P  P  C  S  R  E  *  N  H  D  L  L  H  R  I  F  N  C  F  S  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59775" stop="59807"/>
                    <exon start="61659" stop="61835"/>
                    <exon start="61926" stop="62018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFQFLISSAQNMSTEKSPLEQTSPAVASSCRKKKSESATFLEDVKDHIDEFIHASMDEHASCFKKTINKMFGMSKIVAERNAEAKEVESSLPLQTVVSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61227" e_stop="61835"/>
            <exon e_start="61926" e_stop="62042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.998"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="61227" e_stop="61835" e_length="609"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="61926" e_stop="62042" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61227" stop="61835"/>
              <exon start="61926" stop="62042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG : ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAGTAAAGATTCCCTAAGTAGAAAGAACTC</gDNA_template>
            <first_frame> *  F  *  *  N  K  L  V  I  N  I  L  H  *  L  H  H  Y  S  Y  W  S  I  R  G  T  I  F  F  F  L  M  P  L  K  I  I  I  L  M  Y  F  I  L  T  *  L  I  Y  F  R  H  F  L  S  R  L  A  P  P  L  G  R  G  T  *  L  M  Y  Y  N  T  L  T  I  T  *  P  S  Q  Y  F  K  T  Y  S  A  K  S  L  F  R  F  A  L  S  L  E  *  G  T  *  L  M  L  *  N  T  L  T  V  A  L  L  L  *  H  Y  F  C  L  L  A  Q  F  C  T  Q  L  S  C  L  Y  H  G  I  S  H  Y  L  *  H  K  Q  N  M  S  T  E  K  S  P  L  E  Q  T  S  P  A  V  A  S  S  C  R  K  K  K  S  E  S  A  T  F  L  E  D  V  K  D  H  I  D  E  F  I  H  A  S  M  D  E  H  A  S  C  F  K  K  T  I  N  K  :  M  F  G  M  S  K  I  V  A  E  R  N  A  E  A  K  E  V  E  S  S  L  P  L  Q  T  V  V  S  E  *  R  F  P  K  *  K  E  L </first_frame>
            <second_frame>  D  F  D  R  I  S  *  S  L  T  F  Y  I  D  C  T  I  I  H  I  G  V  F  V  E  L  S  S  F  F  L  C  L  *  K  *  *  F  *  C  T  S  F  *  P  S  *  Y  I  L  D  I  F  Y  L  D  L  L  L  L  S  E  E  E  H  N  *  C  T  I  T  L  *  P  *  P  N  L  A  N  I  L  R  H  T  L  L  S  L  Y  L  D  L  L  F  L  L  N  E  G  H  S  *  C  S  K  T  L  *  R  *  H  C  Y  Y  N  I  T  S  A  F  W  H  S  S  A  P  N  L  A  V  Y  I  M  V  F  L  T  I  Y  N  I  S  R  T  C  R  L  R  R  V  R  L  S  K  R  H  L  L  L  H  H  H  A  E  K  R  S  L  K  V  P  H  F  W  R  M  *  R  I  I  L  M  S  L  Y  M  P  Q  W  M  N  T  H  L  A  L  R  R  P  S  I  R :   C  L  G  C  L  K  L  S  L  K  E  M  L  K  Q  R  R  L  R  A  H  F  L  S  K  L  L  Y  L  S  K  D  S  L  S  R  K  N   </second_frame>
            <third_frame>   I  L  I  E  *  V  S  H  *  H  F  T  L  T  A  P  L  F  I  L  E  Y  S  W  N  Y  L  L  F  S  Y  A  F  K  N  N  N  S  N  V  L  H  S  N  L  A  N  I  F  *  T  F  F  I  *  T  C  S  S  S  R  K  R  N  I  I  N  V  L  *  H  F  D  H  N  L  T  *  P  I  F  *  D  I  L  C  *  V  F  I  *  I  C  S  F  S  *  M  R  D  I  V  N  A  L  K  H  F  D  G  S  I  A  T  I  T  L  L  L  P  S  G  T  V  L  H  P  T  *  L  F  I  S  W  Y  F  S  L  F  I  T  *  A  E  H  V  D  *  E  E  S  A  *  A  N  V  T  C  C  C  I  I  M  P  K  K  E  V  *  K  C  H  I  F  G  G  C  E  G  S  Y  *  *  V  Y  T  C  L  N  G  *  T  R  I  L  L  *  E  D  H  Q  *   : D  V  W  D  V  *  N  C  R  *  K  K  C  *  S  K  G  G  *  E  L  T  S  S  P  N  C  C  I  *  V  K  I  P  *  V  E  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61650" stop="61835"/>
                    <exon start="61926" stop="62018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKQNMSTEKSPLEQTSPAVASSCRKKKSESATFLEDVKDHIDEFIHASMDEHASCFKKTINKMFGMSKIVAERNAEAKEVESSLPLQTVVSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61561" stop="61761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCYYNITSAFWHSSAPNLAVYIMVFLTIYNISRTCRLRRVRLSKRHLLLHHHAEKRSLKVPHFWRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63692" PGL_stop="62723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63692" e_stop="62723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63692" e_stop="62723" e_length="970"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63692" stop="62723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</gDNA_template>
            <first_frame> Q  L  K  H  Q  R  T  Q  Q  G  T  *  S  R  K  V  C  I  R  R  T  *  R  *  L  S  K  S  C  Q  F  *  C  G  R  C  T  T  F  H  D  S  R  L  L  A  D  S  F  V  P  R  V  C  V  H  G  D  I  V  S  Y  P  K  T  Q  T  Q  D  F  D  K  Q  K  L  T  S  L  K  R  K  S  H  L  Q  G  R  I  I  I  I  L  N  K  K  I  *  *  S  V  E  A  S  L  L  S  L  S  F  V  S  I  I  L  *  V  F  A  T  *  K  F  S  S  I  Q  A  K  T  T  L  V  K  Y  S  P  A  S  T  T  R  S  R  G  A  A  S  V  R  V  C  L  K  S  Y  T  F  V  V  I  L  *  I  C  S  *  F  I  K  D  S  D  S  L  F  L  V  C  K  S  I  N  Q  L  T  L  T  D  L  V  G  N  I  V  L  L  L  S  Q  I  L  S  H  L  G  G  M  V  *  W  S  V  L  Y  L  L  S  Q  I  L  N  H  L  E  L  G  G  L  A  S  D  G  V  S  V  *  Q  N  L  S  Y  L  G  V  I  A  *  W  A  V  L  Y  L  L  R  L  F  K  *  *  S  Y  Y  M  V  I  *  S  I  T  S  S  H  I  G  C  N  W  V  H  F  C  L  R  K  I  R  E  T  V  E  N  P  V  Q  Q  V  V  V  L  L  P  *  A  R  R  F  P  R  K  L  L  V  S  S  S  V  H  R  L  L  F  I  </first_frame>
            <second_frame>  S  S  S  I  K  E  L  S  K  G  P  D  P  E  K  S  A  Y  E  G  R  K  D  S  C  Q  K  A  V  N  S  D  V  V  G  A  Q  L  F  M  T  A  D  S  *  P  I  A  S  S  Q  G  F  V  Y  M  V  I  *  S  L  I  L  K  H  K  H  K  I  L  T  N  K  N  S  Q  A  *  K  E  K  V  I  F  K  E  E  *  *  S  Y  S  T  K  R  F  D  E  V  L  K  H  L  C  *  V  *  V  L  C  L  S  F  Y  R  F  L  R  L  E  N  S  Q  V  Y  K  Q  R  L  P  W  *  N  I  L  Q  Q  A  Q  Q  G  P  E  E  L  Q  A  S  E  C  V  L  R  V  I  L  S  W  L  Y  Y  K  F  V  P  N  L  *  R  I  Q  I  V  C  F  W  F  V  K  V  *  I  S  *  P  *  L  I  *  W  A  T  L  F  C  C  L  V  K  F  *  V  I  *  V  G  W  F  S  G  Q  C  C  T  C  L  V  K  F  *  I  I  *  S  *  V  V  *  R  A  M  G  S  P  F  S  K  I  *  V  I  *  G  *  *  L  S  G  Q  C  C  I  C  L  G  F  S  S  N  R  V  I  T  W  S  Y  D  Q  *  L  L  L  T  L  V  V  T  G  F  T  F  A  *  E  R  L  E  K  Q  L  K  I  L  C  N  R  S  W  F  Y  S  L  E  Q  G  G  F  H  V  N  C  L  C  R  L  L  F  I  V  Y  S  L  F </second_frame>
            <third_frame>   A  Q  A  S  K  N  S  A  R  D  L  I  P  K  S  L  H  T  K  D  V  K  I  A  V  K  K  L  S  I  L  M  W  *  V  H  N  F  S  *  Q  Q  T  L  S  R  *  L  R  P  K  G  L  C  T  W  *  Y  S  L  L  S  *  N  T  N  T  R  F  *  Q  T  K  T  H  K  L  K  K  K  K  S  S  S  R  K  N  N  N  H  T  Q  Q  K  D  L  M  K  C  *  S  I  F  V  E  F  E  F  C  V  Y  H  F  I  G  F  C  D  L  K  I  L  K  Y  T  S  K  D  Y  L  G  E  I  F  S  S  K  H  N  K  V  P  R  S  C  K  R  Q  S  V  S  *  E  L  Y  F  R  G  Y  I  I  N  L  F  L  I  Y  K  G  F  R  *  F  V  F  G  L  *  K  Y  K  S  V  N  P  N  *  F  S  G  Q  H  C  F  V  A  *  S  N  S  K  S  S  R  W  D  G  L  V  V  S  V  V  P  A  *  S  N  S  K  S  S  R  V  R  W  F  S  E  R  W  G  L  R  L  A  K  S  K  L  S  R  G  N  S  L  V  G  S  V  V  S  A  *  A  F  Q  V  I  E  L  L  H  G  H  M  I  N  N  F  F  S  H  W  L  *  L  G  S  L  L  L  K  K  D  *  R  N  S  *  K  S  C  A  T  G  R  G  F  T  P  L  S  K  E  V  S  T  *  T  A  C  V  V  F  C  S  S  F  T  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63596" stop="63402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRCTTFHDSRLLADSFVPRVCVHGDIVSYPKTQTQDFDKQKLTSLKRKSHLQGRIIIILNKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69615" PGL_stop="71136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69615" e_stop="69799"/>
            <exon e_start="70236" e_stop="71136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69615" e_stop="69799" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="70236" e_stop="71136" e_length="901"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69615" stop="69799"/>
              <exon start="70236" stop="71136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT : GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</gDNA_template>
            <first_frame> P  Q  P  I  S  F  S  I  S  F  R  H  F  N  K  H  F  F  A  N  T  H  T  S  I  N  Y  I  C  K  I  V  N  I  M  A  R  A  Q  Q  R  Y  R  G  V  R  Q  R  H  W  G  S  W  V  S  E  I  R  H  P  L  L :   K  T  R  I  W  L  G  T  F  E  T  A  E  D  A  A  R  A  Y  D  E  A  A  R  L  M  C  G  P  R  A  R  T  N  F  P  Y  N  P  N  M  P  Q  T  S  S  S  K  L  L  S  T  T  L  T  A  K  L  H  K  C  Y  M  A  S  L  Q  M  T  K  T  S  P  Q  G  Q  K  L  A  K  N  A  T  N  V  Q  E  S  V  I  N  S  Y  K  M  K  Q  Q  M  L  V  P  K  P  S  V  L  L  T  H  H  D  H  H  E  E  A  K  V  V  N  L  G  V  G  V  I  R  K  V  E  D  Q  V  L  E  G  I  P  Q  F  V  K  P  L  E  D  D  H  I  E  Q  M  I  E  E  L  L  D  Y  G  S  I  E  L  C  S  N  V  V  P  S  H  Q  I  Q  *  A  C  S  *  I  D  Y  C  L  I  L  A  T  F  D  Q  C  R  Y  *  I  T  L  L  L  M  F  S  L  S  N  C  L  F  L  G  P  T  L  F  C  T  R  K  I  L  I  L  L  I  *  P  H  L  Y  S  R  S  R  F  V  W  D  *  S  L  V  I  V  V  L  S  L  L  S  S  L  P  L  F  K  I  Y  V  S  L  V  G  L  G  I  F  S  F  W  F  L  E  F  L  L  *  E  N  L  L  L  V  V  K  F  H  Y  N  I  I  F  S  L  F  *  S  S </first_frame>
            <second_frame>  L  N  Q  F  H  F  L  S  H  S  G  I  S  T  N  T  F  L  R  T  H  T  L  Q  L  T  T  F  V  R  L  S  I  L  W  L  G  H  N  K  D  I  E  E  F  D  R  D  I  G  V  L  G  S  P  K  F  A  I  H  C   : *  R  Q  E  F  G  *  A  L  L  R  Q  Q  K  M  Q  Q  E  H  M  M  K  Q  Q  G  *  C  V  V  Q  E  L  E  L  I  S  H  T  T  Q  T  C  H  K  H  L  P  L  S  Y  S  Q  L  H  *  Q  P  S  Y  T  N  A  T  W  L  H  F  K  *  P  K  P  H  H  K  D  K  N  *  Q  K  M  Q  P  M  F  K  K  V  L  L  I  P  I  K  *  N  N  K  C  W  Y  Q  S  H  Q  Y  Y  *  L  I  M  I  I  M  R  K  L  K  *  S  T  W  E  W  E  *  L  G  K  L  K  I  K  Y  L  R  V  Y  H  N  L  S  S  H  L  K  M  I  T  L  N  K  *  L  K  N  C  W  I  M  D  P  L  S  F  A  L  M  L  F  L  L  T  K  S  S  E  L  A  R  K  S  T  I  A  *  Y  L  L  H  L  I  S  A  G  I  R  *  L  F  Y  *  C  S  L  S  V  I  V  S  F  W  V  L  H  C  S  V  L  E  R  Y  S  F  C  *  F  N  P  I  C  I  A  V  P  D  L  F  G  T  E  A  *  L  L  L  Y  *  V  F  *  V  V  S  L  C  L  K  S  M  Y  R  *  *  V  *  A  F  S  L  F  G  S  *  S  F  Y  S  K  R  T  F  Y  *  L  *  N  S  I  I  I  *  S  F  L  S  F  R  A   </second_frame>
            <third_frame>   S  T  N  F  I  F  Y  L  I  Q  A  F  Q  Q  T  L  F  C  E  H  T  H  F  N  *  L  H  L  *  D  C  Q  Y  Y  G  *  G  T  T  K  I  S  R  S  S  T  E  T  L  G  F  L  G  L  R  N  S  P  S  I  V  :  E  D  K  N  L  V  R  H  F  *  D  S  R  R  C  S  K  S  I  *  *  S  S  K  A  N  V  W  S  K  S  *  N  *  F  P  I  Q  P  K  H  A  T  N  I  F  L  *  A  T  L  N  Y  I  N  S  Q  V  T  Q  M  L  H  G  F  T  S  N  D  Q  N  L  T  T  R  T  K  I  S  K  K  C  N  Q  C  S  R  K  C  Y  *  F  L  *  N  E  T  T  N  V  G  T  K  A  I  S  T  I  D  S  S  *  S  S  *  G  S  *  S  S  Q  L  G  S  G  S  N  *  E  S  *  R  S  S  T  *  G  Y  T  T  I  C  Q  A  T  *  R  *  S  H  *  T  N  D  *  R  I  V  G  L  W  I  H  *  A  L  L  *  C  C  S  F  S  P  N  P  V  S  L  L  V  N  R  L  L  P  N  T  C  Y  I  *  S  V  Q  V  L  D  N  S  S  T  D  V  L  S  Q  *  L  S  L  F  G  S  Y  I  V  L  Y  *  K  D  T  H  F  A  N  L  T  P  F  V  *  P  F  P  I  C  L  G  L  K  L  S  Y  C  C  I  K  S  F  K  *  S  P  S  V  *  N  L  C  I  V  S  R  S  R  H  F  L  F  L  V  P  R  V  F  T  L  R  E  P  S  T  S  C  K  I  P  L  *  Y  N  L  F  S  L  L  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69615" stop="69799"/>
                    <exon start="70236" stop="70767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQPISFSISFRHFNKHFFANTHTSINYICKIVNIMARAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNMPQTSSSKLLSTTLTAKLHKCYMASLQMTKTSPQGQKLAKNATNVQESVINSYKMKQQMLVPKPSVLLTHHDHHEEAKVVNLGVGVIRKVEDQVLEGIPQFVKPLEDDHIEQMIEELLDYGSIELCSNVVPSHQIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71128" PGL_stop="70846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71128" e_stop="70846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="71128" e_stop="70846" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71128" stop="70846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAGAGAAAAGATTATATTATAATGGAATTTTACAACTAGTAGAAGGTTCTCTTAGAGTAAAAACTCTAGGAACCAAAAAGAGAAAATGCCTAGACCTACTAACGATACATAGATTTTAAACAGAGGGAGACTACTTAAAAGACTTAATACAACAATAACTAAGCTTCAGTCCCAAACAAATCGGGAACGGCTATACAAATGGGGTTAAATTAGCAAAATGAGTATCTTTCTAGTACAGAACAATGTAGGACCCAAAAAGAGACAATTACTGAGAGAGAA</gDNA_template>
            <first_frame> K  R  E  K  R  L  Y  Y  N  G  I  L  Q  L  V  E  G  S  L  R  V  K  T  L  G  T  K  K  R  K  C  L  D  L  L  T  I  H  R  F  *  T  E  G  D  Y  L  K  D  L  I  Q  Q  *  L  S  F  S  P  K  Q  I  G  N  G  Y  T  N  G  V  K  L  A  K  *  V  S  F  *  Y  R  T  M  *  D  P  K  R  D  N  Y  *  E  R  </first_frame>
            <second_frame>  K  E  R  K  D  Y  I  I  M  E  F  Y  N  *  *  K  V  L  L  E  *  K  L  *  E  P  K  R  E  N  A  *  T  Y  *  R  Y  I  D  F  K  Q  R  E  T  T  *  K  T  *  Y  N  N  N  *  A  S  V  P  N  K  S  G  T  A  I  Q  M  G  L  N  *  Q  N  E  Y  L  S  S  T  E  Q  C  R  T  Q  K  E  T  I  T  E  R  E </second_frame>
            <third_frame>   K  R  E  K  I  I  L  *  W  N  F  T  T  S  R  R  F  S  *  S  K  N  S  R  N  Q  K  E  K  M  P  R  P  T  N  D  T  *  I  L  N  R  G  R  L  L  K  R  L  N  T  T  I  T  K  L  Q  S  Q  T  N  R  E  R  L  Y  K  W  G  *  I  S  K  M  S  I  F  L  V  Q  N  N  V  G  P  K  K  R  Q  L  L  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="89457" PGL_stop="88942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89457" e_stop="88942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="89457" e_stop="88942" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89457" stop="88942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGTAATTACCACATGTTTGTACGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTCGTAATTAAAACTGAAATTCATTTAAATGTTTACGTGATAAATTATTCTTTATATCATAGAAACATTACGACAAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAATTTGTGTTCACCGAAATCTTTTCATCTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATCTTCTGTATCTAGGTGGATACACAGTTTCAGCTACCACGTGTTTAGGATCTGACCAATCTTTCTTATCTGGCATTGGCACCATTGGAATTTCATATGTTTTTGCCAACGCATCAGGCTTGTAATAATCAGAGCAATACGGATTCATATCGGTGACATTCTTTTTTTTCAATACAGCTATTGCATGTGAACAAGGTATCTCATCTAGTTGAAATCTACCACAACAACATACTTTCCGCTCAAA</gDNA_template>
            <first_frame> K  C  N  Y  H  M  F  V  R  L  F  I  *  T  Q  S  V  Q  F  A  V  V  I  K  T  E  I  H  L  N  V  Y  V  I  N  Y  S  L  Y  H  R  N  I  T  T  N  S  L  L  F  W  V  E  S  T  S  S  S  V  V  P  F  L  S  T  L  S  T  T  I  C  V  H  R  N  L  F  I  C  I  L  S  S  S  F  S  W  S  S  R  *  S  S  V  S  R  W  I  H  S  F  S  Y  H  V  F  R  I  *  P  I  F  L  I  W  H  W  H  H  W  N  F  I  C  F  C  Q  R  I  R  L  V  I  I  R  A  I  R  I  H  I  G  D  I  L  F  F  Q  Y  S  Y  C  M  *  T  R  Y  L  I  *  L  K  S  T  T  T  T  Y  F  P  L  K </first_frame>
            <second_frame>  N  V  I  T  T  C  L  Y  V  Y  L  S  K  H  K  V  F  N  L  Q  S  *  L  K  L  K  F  I  *  M  F  T  *  *  I  I  L  Y  I  I  E  T  L  R  Q  I  H  F  S  F  G  *  K  V  Q  V  L  L  L  C  P  S  C  P  H  C  P  Q  Q  F  V  F  T  E  I  F  S  S  A  F  F  L  L  L  F  L  G  R  P  D  D  L  L  Y  L  G  G  Y  T  V  S  A  T  T  C  L  G  S  D  Q  S  F  L  S  G  I  G  T  I  G  I  S  Y  V  F  A  N  A  S  G  L  *  *  S  E  Q  Y  G  F  I  S  V  T  F  F  F  F  N  T  A  I  A  C  E  Q  G  I  S  S  S  *  N  L  P  Q  Q  H  T  F  R  S   </second_frame>
            <third_frame>   M  *  L  P  H  V  C  T  F  I  Y  L  N  T  K  C  S  I  C  S  R  N  *  N  *  N  S  F  K  C  L  R  D  K  L  F  F  I  S  *  K  H  Y  D  K  F  T  S  L  L  G  R  K  Y  K  F  F  C  C  A  L  L  V  H  I  V  H  N  N  L  C  S  P  K  S  F  H  L  H  S  F  F  F  F  F  L  V  V  Q  M  I  F  C  I  *  V  D  T  Q  F  Q  L  P  R  V  *  D  L  T  N  L  S  Y  L  A  L  A  P  L  E  F  H  M  F  L  P  T  H  Q  A  C  N  N  Q  S  N  T  D  S  Y  R  *  H  S  F  F  S  I  Q  L  L  H  V  N  K  V  S  H  L  V  E  I  Y  H  N  N  I  L  S  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89300" stop="89061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVQVLLLCPSCPHCPQQFVFTEIFSSAFFLLLFLGRPDDLLYLGGYTVSATTCLGSDQSFLSGIGTIGISYVFANASGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89418" stop="89185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQSVQFAVVIKTEIHLNVYVINYSLYHRNITTNSLLFWVESTSSSVVPFLSTLSTTICVHRNLFICILSSSFSWSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="92851" PGL_stop="91944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92851" e_stop="92570"/>
            <exon e_start="92368" e_stop="92246"/>
            <exon e_start="92162" e_stop="91944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.972"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="92851" e_stop="92570" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="92368" e_stop="92246" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="92162" e_stop="91944" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92851" stop="92570"/>
              <exon start="92368" stop="92246"/>
              <exon start="92162" stop="91944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> E  L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  D  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </first_frame>
            <second_frame>  N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  L  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </second_frame>
            <third_frame>   I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  R  C  G  W  C  W  C  C  C  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92851" stop="92570"/>
                    <exon start="92368" stop="92246"/>
                    <exon start="92162" stop="91944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVDVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="111079" PGL_stop="104875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111079" e_stop="110884"/>
            <exon e_start="108640" e_stop="108410"/>
            <exon e_start="107225" e_stop="107058"/>
            <exon e_start="106451" e_stop="106338"/>
            <exon e_start="105171" e_stop="104875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111079" e_stop="110884" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110883" i_stop="108641" i_length="2243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108640" e_stop="108410" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107225" e_stop="107058" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106451" e_stop="106338" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="105171" e_stop="104875" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111079" stop="110884"/>
              <exon start="108640" stop="108410"/>
              <exon start="107225" stop="107058"/>
              <exon start="106451" stop="106338"/>
              <exon start="105171" stop="104875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCACTCACCCCCCACCAAACGCACGCTGTACCCTATTGTTTCCTCCAAATTTCAATTCCCTTATTCTTCTTCTTCTTCTCTCCATTTTGTAGAGAAAGGGATTCTAGAATCTTCCATTTCTGCAATTCTTCTTCGATCCTCCTTGCTCTCTTTCTCATGGATCCTCCTACCTCTTGGGATTCCTTGCGAAAGCAG : GCAAGGAAGCTTGAAGCTCAGCTGGATGAGCAGATGCATTTGTATCGTAGATTTGTTTCAAACAAAAGTGGTAACGCTAATGATCATGATCTTGAATCTAGTATAGATCAGCTGCTCAAGCAACTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG : GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG : ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</gDNA_template>
            <first_frame> S  T  H  P  P  P  N  A  R  C  T  L  L  F  P  P  N  F  N  S  L  I  L  L  L  L  L  S  I  L  *  R  K  G  F  *  N  L  P  F  L  Q  F  F  F  D  P  P  C  S  L  S  H  G  S  S  Y  L  L  G  F  L  A  K  A   : G  K  E  A  *  S  S  A  G  *  A  D  A  F  V  S  *  I  C  F  K  Q  K  W  *  R  *  *  S  *  S  *  I  *  Y  R  S  A  A  Q  A  T  S  T  S  K  F  T  N  A  S  M  G  F  I  G  R  I  *  D  L  L  S  Y  T  D  S  P  S  R  N  S  S  R  S  F  S   : G  V  *  P  D  P  F  K  L  Q  S  Q  E  R  A  C  F  I  A  *  R  F  *  R  V  R  P  D  Q  V  R  S  G  R  W  *  W  V  S  *  P  S  T  P  *  R  T  C  Y  S  P  *  D  Y  W  T   : D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *  L  F  I  F  I  H  V  R  R  Y  L  E  L  V  L  M  H  A  V  A  M  P  I  Q  V  S  T  *  F  R  I  </first_frame>
            <second_frame>  P  L  T  P  H  Q  T  H  A  V  P  Y  C  F  L  Q  I  S  I  P  L  F  F  F  F  F  S  P  F  C  R  E  R  D  S  R  I  F  H  F  C  N  S  S  S  I  L  L  A  L  F  L  M  D  P  P  T  S  W  D  S  L  R  K  Q  :  A  R  K  L  E  A  Q  L  D  E  Q  M  H  L  Y  R  R  F  V  S  N  K  S  G  N  A  N  D  H  D  L  E  S  S  I  D  Q  L  L  K  Q  L  Q  Q  V  N  S  Q  M  Q  A  W  V  S  S  G  G  S  E  I  F  S  H  T  L  T  R  H  Q  E  I  L  Q  D  L  F  Q  :  E  F  N  R  I  R  S  S  Y  R  A  K  K  E  H  A  S  L  L  E  D  F  R  E  F  D  R  T  R  L  D  L  E  D  G  S  G  S  H  D  Q  A  L  L  N  E  R  A  T  L  H  R  T  T  G  Q  :  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  S  S  F  L  Y  M  *  E  G  I  L  N  W  F  *  C  T  R  L  L  C  Q  S  K  Y  Q  H  D  L  E  S </second_frame>
            <third_frame>   H  S  P  P  T  K  R  T  L  Y  P  I  V  S  S  K  F  Q  F  P  Y  S  S  S  S  S  L  H  F  V  E  K  G  I  L  E  S  S  I  S  A  I  L  L  R  S  S  L  L  S  F  S  W  I  L  L  P  L  G  I  P  C  E  S  R :   Q  G  S  L  K  L  S  W  M  S  R  C  I  C  I  V  D  L  F  Q  T  K  V  V  T  L  M  I  M  I  L  N  L  V  *  I  S  C  S  S  N  F  N  K  *  I  H  K  C  K  H  G  F  H  R  E  D  L  R  S  S  L  I  H  *  L  A  I  K  K  F  F  K  I  F  F  R :   S  L  T  G  S  V  Q  V  T  E  P  R  K  S  M  L  H  C  L  K  I  L  E  S  S  T  G  P  G  *  I  W  K  M  V  V  G  L  M  T  K  H  S  L  T  N  V  L  L  S  I  G  L  L  D  R :   W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T  L  H  F  Y  T  C  K  K  V  S  *  I  G  F  D  A  R  G  C  Y  A  N  P  S  I  N  M  I  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111078" stop="110884"/>
                    <exon start="108640" stop="108410"/>
                    <exon start="107225" stop="107058"/>
                    <exon start="106451" stop="106338"/>
                    <exon start="105171" stop="105058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTPHQTHAVPYCFLQISIPLFFFFFSPFCRERDSRIFHFCNSSSILLALFLMDPPTSWDSLRKQARKLEAQLDEQMHLYRRFVSNKSGNANDHDLESSIDQLLKQLQQVNSQMQAWVSSGGSEIFSHTLTRHQEILQDLFQEFNRIRSSYRAKKEHASLLEDFREFDRTRLDLEDGSGSHDQALLNERATLHRTTGQMDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107000" e_stop="106389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="107000" e_stop="106389" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107000" stop="106389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACA</gDNA_template>
            <first_frame> E  E  N  S  T  T  V  M  M  L  N  P  S  F  H  M  W  K  Y  F  S  N  T  W  S  C  L  K  N  L  L  L  F  L  A  S  L  S  M  R  I  Y  C  F  P  H  I  I  A  G  V  M  C  *  T  *  D  I  Y  I  *  I  K  *  K  F  K  T  W  S  A  *  Y  M  L  I  L  K  *  M  C  S  R  Y  G  L  E  T  K  T  I  C  N  Y  I  L  I  F  K  S  L  H  P  N  Y  Y  A  *  C  F  L  S  N  S  C  K  G  R  K  N  Y  K  S  T  K  L  C  L  D  G  H  R  F  S  M  D  I  V  I  F  K  S  T  Y  F  I  V  V  I  R  C  C  S  F  C  *  F  Y  S  R  V  Y  C  C  I  *  L  P  T  L  D  N  I  S  E  E  I  T  D  F  L  I  *  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T </first_frame>
            <second_frame>  K  K  I  P  P  Q  L  *  C  *  I  R  L  F  I  C  G  S  I  S  Q  T  L  G  A  A  *  K  T  Y  F  C  F  L  L  L  F  Q  C  G  S  I  V  F  L  I  L  *  L  G  *  C  A  K  H  E  I  Y  T  F  K  *  S  K  N  L  R  L  G  Q  R  N  I  C  *  S  *  N  E  C  A  V  V  M  D  L  K  P  K  Q  Y  A  T  I  Y  L  S  S  N  H  C  T  Q  T  I  T  L  N  V  F  *  V  T  A  V  K  E  G  K  T  I  R  V  Q  S  S  V  *  M  A  T  D  F  P  W  T  L  *  F  L  R  V  L  I  L  L  *  *  S  G  A  A  L  S  V  S  F  I  A  V  C  I  V  V  F  N  C  R  L  L  I  I  Y  Q  K  K  L  L  T  S  *  Y  R  W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q   </second_frame>
            <third_frame>   R  K  F  H  H  S  Y  D  V  E  S  V  F  S  Y  V  E  V  F  L  K  H  L  E  L  P  K  K  L  T  F  V  S  C  F  S  F  N  A  D  L  L  F  S  S  Y  Y  S  W  G  D  V  L  N  M  R  Y  I  H  L  N  K  V  K  I  *  D  L  V  S  V  I  Y  V  N  L  K  M  N  V  Q  S  L  W  T  *  N  Q  N  N  M  Q  L  Y  T  Y  L  Q  I  I  A  P  K  L  L  R  L  M  F  F  E  *  Q  L  *  R  K  E  K  L  *  E  Y  K  A  L  S  R  W  P  Q  I  F  H  G  H  C  N  F  *  E  Y  L  F  Y  C  S  N  Q  V  L  L  F  L  L  V  L  *  P  C  V  L  L  Y  L  I  A  D  S  *  *  Y  I  R  R  N  Y  *  L  L  D  I  D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106998" stop="106801"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFHHSYDVESVFSYVEVFLKHLELPKKLTFVSCFSFNADLLFSSYYSWGDVLNMRYIHLNKVKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="116118" PGL_stop="112727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116118" e_stop="115846"/>
            <exon e_start="115057" e_stop="114925"/>
            <exon e_start="114840" e_stop="114767"/>
            <exon e_start="112938" e_stop="112908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="116118" e_stop="115846" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115057" e_stop="114925" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114840" e_stop="114767" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112938" e_stop="112908" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116118" stop="115846"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114767"/>
              <exon start="112938" stop="112908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</gDNA_template>
            <first_frame> S  Q  V  S  A  P  G  V  Y  Q  A  P  N  G  L  N  T  A  N  A  G  T  S  G  N  Q  V  K  A  A  D  E  T  N  H  E  V  S  H  G  T  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  *  Q  V  S  Q  L  V  W  R  *  </first_frame>
            <second_frame>  H  K  F  L  L  Q  E  S  I  K  H  Q  M  V  *  I  Q  L  M  L  G  L  L  E  I  R  *  R  L  L  M  R  L  T  M  K  S  H  M  V  Q  A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  S :   S  K  S  A  S  *  S  G  V  K </second_frame>
            <third_frame>   T  S  F  C  S  R  S  L  S  S  T  K  W  S  E  Y  S  *  C  W  D  F  W  K  S  G  E  G  C  *  *  D  *  P  *  S  L  T  W  Y  K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : W  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : V  A  S  Q  P  A  S  L  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116118" stop="115846"/>
                    <exon start="115057" stop="114925"/>
                    <exon start="114840" stop="114767"/>
                    <exon start="112938" stop="112936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQVSAPGVYQAPNGLNTANAGTSGNQVKAADETNHEVSHGTSDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113333" e_stop="112727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113333" e_stop="112727" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113333" stop="112727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGA</gDNA_template>
            <first_frame> K  I  K  I  *  S  *  K  Y  F  *  K  A  *  L  I  F  W  G  G  G  G  A  E  R  Q  K  N  S  M  A  V  D  I  *  S  I  S  T  Y  K  I  *  S  I  M  H  N  R  N  I  R  P  K  H  V  P  T  C  I  S  F  C  I  W  D  K  I  V  D  T  C  R  T  V  R  C  S  Y  N  N  S  Y  L  *  S  I  I  F  A  G  I  R  D  K  T  Y  F  H  R  K  G  C  E  V  G  V  L  C  F  T  F  F  G  F  A  D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  </first_frame>
            <second_frame>  K  *  K  F  K  V  E  N  I  F  K  K  H  N  *  F  F  G  E  G  V  G  L  K  D  R  K  I  P  W  Q  *  I  F  E  V  S  A  H  I  K  S  N  L  S  C  I  T  E  T  L  G  R  S  M  S  L  L  A  F  L  F  A  Y  G  T  K  *  S  I  H  V  E  L  *  G  A  A  T  T  T  H  I  F  N  Q  S  Y  L  P  E  Y  E  I  K  H  I  F  T  G  R  V  V  K  *  V  F  C  A  L  L  F  L  V  L  Q  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G </second_frame>
            <third_frame>   N  K  N  L  K  L  K  I  F  L  K  S  I  I  N  F  L  G  R  G  W  G  *  K  T  E  K  F  H  G  S  R  Y  L  K  Y  Q  H  I  *  N  L  I  Y  H  A  *  Q  K  H  *  A  E  A  C  P  Y  L  H  F  F  L  H  M  G  Q  N  S  R  Y  M  *  N  C  K  V  Q  L  Q  Q  L  I  S  L  I  N  H  I  C  R  N  T  R  *  N  I  F  S  Q  E  G  L  *  S  R  C  F  V  L  Y  F  F  W  F  C  R  C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113017" stop="112727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCALLFLVLQMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="115996" e_stop="115846"/>
            <exon e_start="115281" e_stop="115229"/>
            <exon e_start="115057" e_stop="114925"/>
            <exon e_start="114840" e_stop="114767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.169" e_score="0.987"/>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="115996" e_stop="115846" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.169">
            <gDNA_intron_boundary i_start="115845" i_stop="115282" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115281" e_stop="115229" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115228" i_stop="115058" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115057" e_stop="114925" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114840" e_stop="114767" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115996" stop="115846"/>
              <exon start="115281" stop="115229"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591789" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : ATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTG : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG</gDNA_template>
            <first_frame> K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : Y  K  S  *  L  I  P  N  I  C  C  *  E  Q  L  L  T  L  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K </first_frame>
            <second_frame>  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  I  N  H  D  L  S  Q  I  Y  V  V  E  N  S  F  *  P  W :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I   </second_frame>
            <third_frame>   A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   *  I  M  T  Y  P  K  Y  M  L  L  R  T  A  F  D  L   : G  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115246" stop="115229"/>
                    <exon start="115057" stop="114925"/>
                    <exon start="114840" stop="114767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQLLTLGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115995" stop="115846"/>
                    <exon start="115281" stop="115234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVINHDLSQIYVVENSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="127375" PGL_stop="118897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127375" e_stop="127325"/>
            <exon e_start="127212" e_stop="127138"/>
            <exon e_start="125947" e_stop="125886"/>
            <exon e_start="125752" e_stop="125676"/>
            <exon e_start="119019" e_stop="118897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.638" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127375" e_stop="127325" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127324" i_stop="127213" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127212" e_stop="127138" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="127137" i_stop="125948" i_length="1190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125947" e_stop="125886" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125885" i_stop="125753" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125752" e_stop="125676" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.638">
            <gDNA_intron_boundary i_start="125675" i_stop="119020" i_length="6656"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119019" e_stop="118897" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127375" stop="127325"/>
              <exon start="127212" stop="127138"/>
              <exon start="125947" stop="125886"/>
              <exon start="125752" stop="125676"/>
              <exon start="119019" stop="118897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAGGGTTTAATCAAAGCCAGAGGGCCGCATTTGTCAAAGTTTTAATGAG : GTTTGGAGTTGGAGACTATGACTGGGCAGAATTCACACCAAGACTGAAGCAGAAAACTTATGAAGAAATAAAAGA : TTATGGGTTTCTGTTTTTGTCTCATATTGCTGAAGATATTACTGAATCACCAACATTTAGAG : ATGGGGTTCCAAAAGAAGGACTAAGAATACCCGATGTGCTATTGAGGATTGCAGTCTTGCTTCTCATTAGAGACAAG : GTCAAGGCTTTCTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCA</gDNA_template>
            <first_frame> T  R  V  *  S  K  P  E  G  R  I  C  Q  S  F  N  E  :  V  W  S  W  R  L  *  L  G  R  I  H  T  K  T  E  A  E  N  L  *  R  N  K  R  :  L  W  V  S  V  F  V  S  Y  C  *  R  Y  Y  *  I  T  N  I  *  R :   W  G  S  K  R  R  T  K  N  T  R  C  A  I  E  D  C  S  L  A  S  H  *  R  Q   : G  Q  G  F  L  G  R  D  N  *  S  S  F  C  Q  G  H  R  I  L  V  S  W  I  E  R  W  T  C  L  E  G  R  S  *  F  A  A  A  T  S  </first_frame>
            <second_frame>  L  G  F  N  Q  S  Q  R  A  A  F  V  K  V  L  M  R :   F  G  V  G  D  Y  D  W  A  E  F  T  P  R  L  K  Q  K  T  Y  E  E  I  K  D :   Y  G  F  L  F  L  S  H  I  A  E  D  I  T  E  S  P  T  F  R   : D  G  V  P  K  E  G  L  R  I  P  D  V  L  L  R  I  A  V  L  L  L  I  R  D  K  :  V  K  A  F  S  E  E  T  T  S  P  L  F  A  K  D  I  V  S  W  F  P  G  L  K  G  G  R  V  W  K  E  D  H  D  L  L  L  L  R  A </second_frame>
            <third_frame>   *  G  L  I  K  A  R  G  P  H  L  S  K  F  *  *   : G  L  E  L  E  T  M  T  G  Q  N  S  H  Q  D  *  S  R  K  L  M  K  K  *  K   : I  M  G  F  C  F  C  L  I  L  L  K  I  L  L  N  H  Q  H  L  E  :  M  G  F  Q  K  K  D  *  E  Y  P  M  C  Y  *  G  L  Q  S  C  F  S  L  E  T  R :   S  R  L  S  R  K  R  Q  L  V  L  F  L  P  R  T  S  Y  L  G  F  L  D  *  K  V  D  V  F  G  R  K  I  M  I  C  C  C  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127374" stop="127325"/>
                    <exon start="127212" stop="127138"/>
                    <exon start="125947" stop="125886"/>
                    <exon start="125752" stop="125676"/>
                    <exon start="119019" stop="118897"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFNQSQRAAFVKVLMRFGVGDYDWAEFTPRLKQKTYEEIKDYGFLFLSHIAEDITESPTFRDGVPKEGLRIPDVLLRIAVLLLIRDKVKAFSEETTSPLFAKDIVSWFPGLKGGRVWKEDHDLLLLRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="158240" PGL_stop="157438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158240" e_stop="157438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="158240" e_stop="157438" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158240" stop="157438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAAAGAGTGGTTATTTGGCAATTGGTTTTGGTCGTGGTATGGTGAATAGTTATGCATACGTGGGCTGGGTTGATGACACTGGTAACGGGAA</gDNA_template>
            <first_frame> P  L  K  S  M  D  T  K  Y  D  L  Q  L  N  Q  N  A  T  M  R  V  I  W  A  L  G  L  I  K  P  P  D  S  L  R  P  F  Y  L  P  Q  N  H  G  G  S  Y  G  H  L  T  L  N  V  S  E  H  I  D  D  C  L  G  P  L  D  A  E  D  K  Q  D  Q  D  L  V  I  A  D  K  K  G  P  L  V  V  S  T  G  P  A  V  F  Y  P  N  P  P  N  P  S  K  V  L  Y  I  N  K  K  E  A  P  L  L  R  V  E  R  G  V  Q  V  K  F  S  I  Q  A  G  H  D  V  A  F  Y  I  T  S  D  P  L  G  G  N  A  T  L  R  N  M  S  E  T  I  Y  F  G  G  P  E  A  Q  G  V  Q  A  T  P  T  E  L  V  W  A  P  D  R  N  T  P  D  L  V  Y  Y  Q  S  L  Y  A  Q  K  M  G  W  K  V  Q  V  V  D  A  G  L  P  D  M  Y  N  S  S  V  V  L  D  D  Q  Q  V  T  F  F  W  T  L  A  E  N  S  I  S  I  A  A  R  G  E  K  K  S  G  Y  L  A  I  G  F  G  R  G  M  V  N  S  Y  A  Y  V  G  W  V  D  D  T  G  N  G   </first_frame>
            <second_frame>  H  *  S  P  W  I  L  S  M  I  C  N  *  I  K  M  L  Q  *  E  *  Y  G  L  *  V  *  *  N  L  R  I  V  F  G  L  F  I  S  H  K  I  M  V  V  A  M  G  T  *  H  *  M  S  R  N  I  L  M  I  A  W  G  R  W  M  Q  K  I  N  K  I  K  T  L  S  L  Q  I  K  K  D  H  L  L  F  Q  Q  V  Q  L  C  S  T  Q  I  L  Q  T  L  L  K  F  S  T  L  T  R  K  R  H  P  F  S  G  *  R  G  V  F  K  *  S  F  Q  F  R  L  G  M  M  L  P  S  I  *  P  Q  I  H  L  V  E  M  L  H  *  G  I  C  Q  R  P  S  T  L  G  D  L  K  H  K  E  F  K  P  L  P  Q  N  *  F  G  L  L  T  G  T  R  Q  I  *  F  T  I  S  L  Y  M  L  R  K  W  G  G  K  F  K  W  L  M  Q  A  Y  L  I  C  I  T  A  A  *  F  W  M  I  S  R  L  L  S  F  G  R  W  L  K  I  Q  S  P  L  Q  L  E  G  R  K  R  V  V  I  W  Q  L  V  L  V  V  V  W  *  I  V  M  H  T  W  A  G  L  M  T  L  V  T  G  </second_frame>
            <third_frame>   I  E  V  H  G  Y  *  V  *  F  A  I  E  S  K  C  Y  N  E  S  D  M  G  F  R  F  D  K  T  S  G  *  S  S  A  F  L  S  P  T  K  S  W  W  *  L  W  A  L  D  T  E  C  L  G  T  Y  *  *  L  L  G  A  A  G  C  R  R  *  T  R  S  R  P  C  H  C  R  *  K  R  T  T  C  C  F  N  R  S  S  C  V  L  P  K  S  S  K  P  F  *  S  S  L  H  *  Q  E  R  G  T  P  S  Q  G  R  E  G  C  S  S  K  V  F  N  S  G  W  A  *  C  C  L  L  Y  N  L  R  S  T  W  W  K  C  Y  I  E  E  Y  V  R  D  H  L  L  W  G  T  *  S  T  R  S  S  S  H  S  H  R  I  S  L  G  S  *  P  E  H  A  R  F  S  L  L  S  V  S  I  C  S  E  N  G  V  E  S  S  S  G  *  C  R  L  T  *  Y  V  *  Q  Q  R  S  S  G  *  S  A  G  Y  F  L  L  D  V  G  *  K  F  N  L  H  C  S  S  R  G  E  K  E  W  L  F  G  N  W  F  W  S  W  Y  G  E  *  L  C  I  R  G  L  G  *  *  H  W  *  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158240" stop="157440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLKSMDTKYDLQLNQNATMRVIWALGLIKPPDSLRPFYLPQNHGGSYGHLTLNVSEHIDDCLGPLDAEDKQDQDLVIADKKGPLVVSTGPAVFYPNPPNPSKVLYINKKEAPLLRVERGVQVKFSIQAGHDVAFYITSDPLGGNATLRNMSETIYFGGPEAQGVQATPTELVWAPDRNTPDLVYYQSLYAQKMGWKVQVVDAGLPDMYNSSVVLDDQQVTFFWTLAENSISIAARGEKKSGYLAIGFGRGMVNSYAYVGWVDDTGNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="169301" PGL_stop="173400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="169301" e_stop="169583"/>
            <exon e_start="172942" e_stop="173145"/>
            <exon e_start="173219" e_stop="173400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.863" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="169301" e_stop="169583" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.863">
            <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="172942" e_stop="173145" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="173219" e_stop="173400" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169301" stop="169583"/>
              <exon start="172942" stop="173145"/>
              <exon start="173219" stop="173400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC : CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG : GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</gDNA_template>
            <first_frame> K  K  A  H  L  F  F  *  G  F  T  R  S  L  L  P  L  Q  N  T  S  E  L  R  F  L  G  L  R  F  V  F  V  R  V  F  D  G  P  R  S  D  L  R  V  *  I  L  I  F  S  G  R  F  *  R  E  K  G  N  D  G  A  F  *  Q  R  A  *  R  A  D  C  C  C  W  E  Q  A  D  *  A  S  F  F  T  *  R  T  P  P  F  A  *   : P  S  R  V  F  P  V  *  S  G  A  V  T  S  E  I  N  A  *  C  T  F  S  I  D  E  G  I  G  C  K  *  S  L  E  A  F  *  C  *  C  E  G  R  S  C  F  V  Y  *  *  D  N  *  N  Y  C  T  R  R  S  I  *  *  R  Q  N  E   : G  Y  L  S  I  N  C  V  V  F  *  E  S  G  *  P  V  *  Q  I  L  *  *  E  G  D  D  P  *  D  S  G  Q  G  Q  V  M  C  C  H  A  G  S  R  M  *  W  A  H  R  *  D  V  S  A  L  P  *  S  Y  K </first_frame>
            <second_frame>  K  K  L  T  C  S  S  R  V  S  Q  D  L  F  C  L  C  K  T  R  A  N  C  D  F  *  G  Y  D  L  C  L  F  G  C  L  M  V  R  G  V  I  *  G  Y  K  S  *  F  F  L  E  D  F  E  E  R  K  E  T  M  A  P  F  D  K  E  L  E  E  Q  I  A  V  A  G  N  K  L  I  E  P  P  S  S  L  E  E  L  L  R  L  L  D  :  Q  V  E  S  S  L  S  K  V  E  Q  S  P  A  K  S  M  H  D  A  L  S  P  L  M  K  A  L  V  A  N  D  L  L  R  H  S  D  V  D  V  K  V  A  V  A  S  C  I  S  E  I  T  R  I  T  A  P  D  A  P  Y  D  D  D  K  M  K  :  D  I  F  Q  L  I  V  S  S  F  E  N  L  D  D  Q  S  S  R  S  Y  N  K  R  V  M  I  L  E  T  V  A  K  V  R  S  C  V  V  M  L  D  L  E  C  D  G  L  I  A  E  M  F  Q  H  F  L  K  A  I   </second_frame>
            <third_frame>   K  S  S  L  V  L  L  G  F  H  K  I  S  F  A  S  A  K  H  E  R  I  A  I  S  R  V  T  I  C  V  C  S  G  V  *  W  S  E  E  *  F  E  G  I  N  L  D  F  F  W  K  I  L  K  R  E  R  K  R  W  R  L  L  T  K  S  L  K  S  R  L  L  L  L  G  T  S  *  L  S  L  L  L  H  L  K  N  S  S  V  C  L  T :   K  *  S  L  P  C  L  K  W  S  S  H  Q  R  N  Q  C  M  M  H  F  L  H  *  *  R  H  W  L  Q  M  I  S  *  G  I  L  M  L  M  *  R  S  Q  L  L  R  V  L  V  R  *  L  E  L  L  H  Q  T  L  H  M  M  T  T  K  *  R :   I  S  F  N  *  L  C  R  L  L  R  I  W  M  T  S  L  A  D  L  I  I  R  G  *  *  S  L  R  Q  W  P  R  S  G  H  V  L  S  C  W  I  *  N  V  M  G  S  S  L  R  C  F  S  T  S  L  K  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="169446" stop="169583"/>
                    <exon start="172942" stop="173145"/>
                    <exon start="173219" stop="173398"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLEDFEERKETMAPFDKELEEQIAVAGNKLIEPPSSLEELLRLLDQVESSLSKVEQSPAKSMHDALSPLMKALVANDLLRHSDVDVKVAVASCISEITRITAPDAPYDDDKMKDIFQLIVSSFENLDDQSSRSYNKRVMILETVAKVRSCVVMLDLECDGLIAEMFQHFLKAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 80 chains have been computed
$ 
$ memory statistics:
$ 62712 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2162 bytes was the average size of a spliced alignment
$ 28496 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1499 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 89 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:31:29
-->
