<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:01:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="-" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>gaaaagtaaaagcgtccccntaccgtcccttaagactctactagacttgttcttgtgtgatgagaccaacgaccctaatgctctgataccaagttttgtcacgacccaaatccgggccgccactggcacccacacttaccctcctatgtgagcgaaccaaccaatctaaaccttaacatttcaatgtaatagcaacagaaagtaatgcggaagacttaaactcattaataaaatcaataactactattattaaacatctattattcccaaaacctggaagtcatcatcacaagaacatctactttaaactactaattctaagagtttctaagaagctaaaaaattacataagaagctagtccatgccggaagttcaaggcatcaagacatgaaggagaagatccagtccaagctagaagcgttagctcaccctgaagatccggtgtgacgaagactggcttgagttactgttgagtcgaagatgacggcacgtttgctgcactccacaaataacaagaagaaaaacataaaagtaggggtcagtacaaaacacggctactgagtagatatcatcggccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="4104" stop="11080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4404" g_stop="4499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4500" i_stop="10300" i_length="5801">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10301" g_stop="10780" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="580" r_length="484" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4404" e_stop="4499"/>
          <exon e_start="10301" e_stop="10780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTAAAGGCGTCCCCCTACCGTTCCTCAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAAATGAGCCGCGAGTGGCACCCACACTTATCCTACTATGTGAGCGAACCAACTAATCTAAACCCAACATTACAACCATAATAACCAGAATAAAATAAGGAAGACTTAAAACTCATTAACGAAATCAATAATTAACTTCTAAAACTCAAAACTTATCATTATCCCCAAAATCAGGAAGTCAGCATCACAAGAACATCTATCCTCAAATTACTAAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAGAGATGGTCCATGTCCAAACTTCAAGACATCAGGACGTGAAAGAAAGAATCCACTCCGATCTAGGAACAATAGCTCACCTTGAAATCTGATTATGATGAAGTCTGGCTAGAGTTGTGGTTGAGTCGAAGTCCATGGCACGTTTGCTGCACTCCACAGATAACAAAGAATGAAACATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGACATACTCAAAATAGAAAGCAATATATATCAGATAATAACATCAAATCGACTACCATACTCAACAGATAACAACAACAAGTACCATAACCATTGGCCACAACCCAAGCACATCTATAAGGACTCACGCCTCTACACCATACTCATTTGGGAAATAAGTTCTTTAAATTGAGTATATTAACATAATTTCAAGATTCATTCTTTTTACTATCCTGGTGTCGGAACGTGACACTCCGAACCTCTACTACTATCCTGGTGTCGGAACGTGACACCCGATCAATTATTACTATCCTGGTGTCGGAACGTGACACCCGATCCATTACTACTATCCTGGTGTCGAAACGTGACACCCGATCCATTACTACTATCCAGGTGTCGGAACGTAACACCCAATCCATTAGTACTATCCTGGTGTCGGAACATGACACCCGATCCATTACTACTATCCTGGTGTCAGAACGTGACACCCGATCCACTATTACTATCCTGGTGTTGGAACGTGACACCCGATCCACTATTACTTTCCTGGTGTCGGAACGTGACGCCCAATCCACTAACCTCATTATTTTACTTCATCAAGCCTTCTTTTATACCAAGGCATCAGCATTAACAGAGAGGGTTTTAGGTTTAAACTTCACAACCTCATCTTTCCAACCCATTACAGTTACATAATCACATCATGCAATCATACAATTAAGCATATAGAAGACTTTACAATACTACCCAATACATATCATTCGCTATTAAGAGTTTACTATGAAATAGCATAAACCATAACCTACCTCCACCGAAGAATCAAAGTCAAGCAACTACTTCTCCAATGCCTTTCCCTTTTTTTTATTGCTTCTGAACCCTTCCAATCTATCAAATATATATATACATACATAAGGTGTAAGTTCACAAGACCATATACACTTATTATTCTGTGTCTAGCCTTTACCCATCACTTCACCTAATTCTACAATCTATCTCTTAAAGTTTAAACTTAATGGTAAGTCTTAATTCTTTCAATTAGCATAAATTTGATGAAATTTTAAAAATTCGATGCACTTAATACTTAATTACTTATCTTATTATATCAAAACTTGAATTATAATGTAATAGAAAATAATCTTAAACATCGCAGATTGATGTAAAGTCACTAGCGTAGATTTATCACTAAACAAGTATGCATAATCAACCTATTCTACCAGTTTAATATTACTAGATTTTCATACCCTCATAATTCCCATCATCCTGACAATTTATTAGCCACTAATATTTGTCTCCCAAAAATTCTAAAGCCGAAATCATTAAACCTCAATTGTTTTATATATTCAAACCATTCACTGTCTAAACTTTGCCAACATTCCTTTAAACTTTAATTTCTCTTATTATTTATTCTGTCATAACATGACACTATGTAGTATATGTAAAGGTATAATTAGGCTCCCACCCAATAATTCAATATGCTTAGAAAATAATGCGGTAGTTGAACACTTACCTGAAGGCACAACCACATCCTCACGTCTCATGTAAGGCTCTTGTTGTTCTTCGCTTCTCTTTTTTTTTCTTTTTTTTTAAAGACAAACTTCTATCCTAATTATAATATAATCAACTATACAATTTGATAAAAGTGACATATTATTTATTTTAATATTATTTTCCTAACCACTAACTAAATAAATTAGTAAAACTACCCCATTAATTTTATAGTTATTATTATGAAATAGTTCAAAATACCCATTTACAATCTAACGAAAGATATTTTATAAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACACCTATGGTTCATAGGTGGACCTCGTTTGTGGCACCTATAACTTTTCAAAATCTGTAATTTGGTGTTTCTAAAAAATGGGGTGTTAAATTATCTTCCCCTTGGGAAGATTTGTCCTTGAATGAAATCTAACATAGCTGGGTATGGAGGTTACGATGTGCAATCCCTACCATTAAGTACTAAAAACTGTTTTTTTACATCTAAGTTCCAAGAACATGAAAATATGGTAAAAATGCAAGAACAACAAAAGGAACAAGGTACTTAGAAAGGATTAAAACAAGAATAAGTTGAGGGACTAGAAACTAACTATTACCTGTAGCAGAAACTGAATTGGAAGGAAATATATAAGGGCACTTGGCCTTCATGACTCCTTCTATTTCCCCAATAGTTACCTCTACCGACTCAGTCCTCCACAAAACCTTTACCGAAGCAAATTCTTTATTTATCAACCTACAAATCTGAAGTTCAAGAATCTCAATCGGCACCTTTTTAAAAGTGAGACTATTTTTAACAGCCAACTCTCTGATGGCACTGTGGATGTCGAATCACCTACACATTTCTTCAACAAGGAAATGTGAAAGAATGGATGAACCGCTTTTAGGGAAACTCTAACTCATATACCACATTTCCATCACTTTTCAAGATTCTTTAAGGACCTACATATATCATATTGAGCTTCCCTTTCCTAACAGATCTCATAGAATCCTTCATAGATGATACATTAGGGAAAACCCAATCATCGATCTCAAACTCTAAGTTTGAAATTCCCCAGAAAATAGTAGGCTAAACTGGAGCTTGACATTAGGGTAAGTGTCTTAAATGTACCTCCCTATACCTTAAAATATAGAGTTTTATGTTAGAACTTCTGTCACATCCCGAGACCACACCGTAGAATTTAGAGCCAATATCGGATTGCAACAGGTGTACTTGACCTCTCGGAGGTTTTGTACAAGCCATTACATATCATTCATCGCATAAACATAATGAAAAGTAATGCATAATTTAAACTTTTAATAAAACATATCATTGTCTTTAAAAACTCTTTCGTATAAGTCTTAGAAATCACTAAGTCTCAACCTCATTAAACTTAAGACATGAGAATACATGGGACACGTCCCATACTTCAAAATATAGAAATACTTAGTCTATTACAATACTTCGATAGGTAGCATTAATGACATCTATACCCTCAAATAAAATGAGGACATACTTCGACTTCACTTGAACAATGCTATGATCAAGGTCTTCCTTCCAAAATACTCCTCACCAACCAACAACTATAGATATAGGTAAAAGCATGGATTGGTACCACCACATGTAGTAAGTATGGCATAATGCATGAAAATCATAAAAACTGACATTTAGTCGAAATATGCATCTTTTCACATAAAAATCATATTATAATAATAAGAACAACATTTATAACCTTATAAACAGAAAAGATAATATTTAGCCAAAAATCATAATTTTTGAAGTCACTTTACAGTAACGTCAACTTACTATTACAGTGAATTCCTTCAGTGTACAATAAAGTTGCTTATTTTTACCTTAAACATATTCTAGCATATAATCATCCCACTTAAAACTATCCTATGTCTCACTTAAGTAACACATAGTAAATATCGCACATACGCAATCTCTAGGAATGCCTTGATTCTCAAGAGTACTTATGATGAGTCACATACATACTTACAAGACATCAAAGCACCAACACAAACATAATATAACATTCTCCTTCCAATGGTTATCAAAAGACCTACATAAGTCAATCAAGAAGAAAACGTCCATGATTGACCTCTTCAATATTACCTAAGTAATCCTTAACACTACCTAAAGCTTAGATCATGTACACATAGTCAACCGATTTCACTAACTAGAGTTATTCTTAAGACTCATCTAGGTAAGATACAAAGTTATCATTCATATGCCCCCTTCACTCTTTAACTAGACAGCCCTTAATTACTCTAAATTATTACTTATTATTTTAGCATACTTTCTTAATTTAAGTCATAACATTCAGTAGTTTATTTAGGAGACATTCAACACATAAAGGGCATTCAAGTGATGATCTTGTAAAATACCTAGGAACTCCGAGTAACACATTCAGAGCCTATTGTGAAATGTCTAGATAGTGTCTCATACCACCACCTAAACCTCATAGAACTTCTCTAATGCTAGTTGGCATTCCATATGATGAGAATAGGCAATAACCGACATAGACCATGATAGCAAGACATGGAATCCTACTTTTTAACCTACTCCAATGAGGTTGTTCTACTTCCAATGGTAGAACTTAGACACATCCCAAGTAGGCACATGCTTAAGGAATTGGAGGGCATGCTTTGTATTGTAGTCTCATTCTTTGACTTAAACTACTTCCCTTACAATACTCACTCGGTGCTAGCCTTCTTTCACCTAGAGTAATTCCCACTTAACATTCACACAAAATGGTTCCATATCAATTTTATAACCCAATTACATTTACCCGACCAAAGAGGCCTTCTAGGGATACCTTACAATGGCGACAAGAAGCTCAATATGAATTTACTAAGGATTAATATGATGTCTTTTCAGCCAATTAACTTTAAGTCCATCATTCCTTTACTTTGAAGGATACCATTATTGCTTACGACCTAAACATTCATAACCTTACCACTAGGTTAAAGGTTTCACATAAAAGACCCTCTTAACTTCATTAAAGGTCACATGTCATTCATACAATCATGACTAAGAGACATTAGCATCCTAATTCAAGGCATCACACATTCACATTCATTCATTCATCAAGCAAGGGACATAAGTCAACCAAGACAAGACACCACATACTTCACTTTAACTCATAACACATGTCATTCCAGAAGCACATAGAGATAACCTTTATCGTCTTCAAGTTATCCTATGCACTATCATACCATCATAAATGTGACAAACATAGACTCATATAGTCAATTAGGAATAACCAAGTATATACCCTAAGGCTATACACACAAGATCAAATTTTTTATCTAACATGATCACCTAAGACGACTTGAATAGAAATACACATATATGACTTAACATGTAGATAGATATCGTCATACTTCACCTAATAAACTGTACAAATAGAAACATTACTTCAAGTAGTTGCCGACAAGGACATGATCATTAAACTACTTAAAATAACGCCGACAAGGCTACATAACTTGCTAGTAAATCACGTAAAACCGCCACCATAAGTGGACAATACCAATCATAACACATTTGAAGTCTAATTAATCATAAACAAAGGAAATAGGGTAGCTTACAACGACATAATCCTCACCAACTCAAGCGAACGTCAAATCACCACATTCTATATTATAAGGCCCTTACCCATGATCATAACCTGCAACTCAACATAATTGAAACAATATTCTTGAAACTAGGTCAAATTACTACATATTCATCAATCCAAAACAACCTATGTATTAATTTACTACAATTATTATATCAGTCGACAGCCCATAAGAATCTACACCATAATTCATCAACATTACACCAATATCAATGTCACGACCCAAA-CCGGGTTGCGACTGGCACCCATACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATATAATATAAACAGAAAGTAATGCGGAAGACTTAAACTCA-TAA-ATAATCAACTTCTATAACTCAAAAACTTATCACTATCCCCAGAATCTGGAAGTCATCATCACAAGAACATCTACCTTTAAATTACTAA-ACTAAGAGTATCTAAAAAGCT-AAAAA-TACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGGCGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATAATCGGCCAA</genome_strand>
        <mrna_strand>GAAAAGTAAAAGCGTCCCCNTACCGTCCCTTAAGACTCTACTAGACTTGTTCTTGTGTGATGAGACCAACGACCCTAATGCTCTGATACCAAGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGACCCAAATCCGGGCCGCCACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAGCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTACTATTATTAAACATCT-ATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTA-CTTTAAACTACTAATTCTAAGAGTTTCTAAGAAGCTAAAAAATTACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGCTACTGAGTAGATATCATCGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14008" stop="15320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14308" g_stop="15020" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14308" e_stop="15020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14008" stop="15203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14308" g_stop="14903" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14308" e_stop="14903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14008" stop="15133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14308" g_stop="14833" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14308" e_stop="14833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14079" stop="15357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14379" g_stop="15058" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14379" e_stop="15058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="16616" stop="14616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16316" g_stop="16130" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16129" i_stop="15394" i_length="736">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15393" g_stop="14880" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16316" e_stop="16130"/>
          <exon e_start="15393" e_stop="14880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTATGGATGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGCGGTAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14597" stop="15952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14897" g_stop="15652" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14897" e_stop="15652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATCCCAGGCTTGGCTAACGTCACCTTTTTAGCATTACAATCCAAGATTGCAAATTGCAGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTTACCACACAAGACCTATATACC--TT----TACCGCAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="15285" stop="16672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15585" g_stop="16372" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15585" e_stop="16372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCTCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCGCCACGTTCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATCT-CCC-CATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGTAGAAGTGTTGACCGGTTTGAGGTGGTCCCCCAACTACAGTCTGTAGTAAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGACTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="15361" stop="16656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15661" g_stop="16356" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15661" e_stop="16356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCTCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCGCCACGTTCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATCT-CCC-CATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGTAGAAGTGTTGACCGGTTTGAGGTGGTCCCCCAACTACAGTCTGTAGTAAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGACTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="15921" stop="17239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16220" g_stop="16939" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16220" e_stop="16939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGAGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCATTCTACTATACCCATCTTGTGTACTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTTATCACTTGTCATTACAGGCCCTGTAGGCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAAAAAACACTGGGGGTGTCTGGCCCTGATTAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGAAATCCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="15923" stop="17186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16223" g_stop="16886" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16223" e_stop="16886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGAGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCATTCTACTATACCCATCTTGTGTACTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTTATCACTTGTCATTACAGGCCCTGTAGGCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAAAAAACACTGGGGGTGTCTGGCCCTGATTAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTG-GAAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17604" stop="16717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17304" g_stop="17017" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17304" e_stop="17017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCATTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAGGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAAATTTCACTCTTTCATACTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTTG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG--AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="18101" stop="16775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17801" g_stop="17075" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17801" e_stop="17075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG-TTTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAGTGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTTAAATGTTAAGGTTTAGATTGGTTTGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAATCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCATTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAGGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAAATTTCACTCTTTCATACTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGTGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGG--AAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="18101" stop="16850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17801" g_stop="17150" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17801" e_stop="17150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG-TTTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAGTGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTTAAATGTTAAGGTTTAGATTGGTTTGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAATCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCATTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAGGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAAATTTCACTCTTTCATACTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGG--AAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356257" ref_strand="+" ref_description="SGN-E356257 [cTOS-20-J8]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="29176" stop="38877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29476" g_stop="29863" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29864" i_stop="38441" i_length="8578">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38442" g_stop="38565" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="513" r_length="124" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356257" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29476" e_stop="29863"/>
          <exon e_start="38442" e_stop="38565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATATGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCACGACGGACCGTCACAGGCGTGACGGACCGTCACGGAGACTTTAGTGAAAATCTATTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCAAGGCAAAATCGGATTTCCTTACACGTTTT-AGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAGAAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACACCAAGCTTTGAGGATTAACTTGCTTGATTTCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTCTTAATAGTGAATGATATCTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCAGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCATGTTCCGACACATGTAGGGGATCAGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACATACCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAATTTGATGGTACTTATTGATGATTATAATGCTTGTTGTTGCTCCATGTTGAGTTTTATAGTTGATTTATGATATTACTTGATGTATACTGTTCTCTATTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTGTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATTTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTATGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAATTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAACTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACATACACACACACACACACACACATATATATACGCACACACATACACACACACACACACACACACACATATATATATATATATTTACACATACACACACACACACATCTTAATCTAAAATTGCTGATGTGGCATGCCTCTAAGTTCTAAGAAAATATTTAGTTTTTTTGTTTTTTTTACTTTTTTTGAATTTTAAAATACAAAATATTACTTAAATATAGAAGATAATCACAATTAAAGTCATTATATAATAATTACTCTTATGTCTGTTATCTTTCTTTTTATATTCGTATGTTACTGATTATTTTACTAACTATAAATATCAAAGCAAATGTCTTGCACTATACAACATTTTATTTTTTTTCATTCAGAATTTCCTTTCAATTTTTTTTTCTTTTTATTTTATTTTATTTTGCTTCTTTTCTCTGCAAACTCTTTTCCAAGAAATTTCTTTCTTTTTTATTATTTTCTATTGATTTTTATTGTAACATTATTAGAGTTGTCTCAACAATTATTATTTTTGTACTTAATTTCATGCCTAATTTTTATTTGTTAGAATATGGGAGAGAGCAACATGTATATGACCTTTTTTGTGAAAGGAACTGGTCATGATCAAGCTTGAAAAATATCAATCATTCGCGATATAACAAACTTTATCTACATATATTTTTCTGTTGGAGGGTTGTATATAGTAATAGTGTGAATTCAAATATAACAAATTTTATTATTCTAGGATAAATGTCATGTTTTACAGTTATGAAATAAAATATTAATTTTCCATCAAATTATTATTATTATTATTTCTATTATTATTATTATTATTAATAATAATACTAATAATAATAATAATAATAATAATATTAACACATAAAACCTCTCCTTATACTATTCCTTAATAAGTAACATATTCATAAGAACTTACAGTAACAATCAATACGGAAAATACAACAAGATGAAGAAAAGAAGAACAAACAAAAAGTATGTATGTTATAAAAGTTTGACACATCATTCACCATTTATATACTATTATTTATATACTTTTAGTATACTAAGATAATGAACTCGATTGACACATCATTTTGTCATTTGAGAAGATTTTTTAACAAGTGATAAAAGTTTGAGAAATTTTTATCATTCATTAAGTATATATATTTTCGACTTATTTAAAATATCTATAATTGTTTGTCCAGTCCACCAAGTCAAATTCCAATATTATTGTAAATCACATTTTATATGAAATCTAAAATATTAAAAATTTATTGAACATAACTTTGTTTGTTGAATGAAAATCAAATCAGTAGGATCTTTTTAAAAAAAAATGTAGTTTAGAACATTCAAAGTGTTTTTTTTAAAATACAATTATAAATTGACTTTTCAATTAGTTACAAATTTGTAAAATGTAATTCACAAAGCCAGCATTGTAATTGTCTATTTTTCTCCTTTTTTGGATTATTTCTCATTTTTTCCTTAAAATATAAGTACATAAATGATAATTGAATAATAGATGAAATTGTCATTTAAAATAAATTAAAATTGACAATTATTGCCTTTTTTATCCATCTTATGTAATATTTTAGACTATTCATTTACCTTATTAATTTTTGCACATTAATGTCACTTTCTCTTCTCATGTCTTTTGATATTCCAAGTATGGAAAAGTATCCATATAAATTTGATTACAATTAGATATACATATTCCATAACAATCCATTTTTCATTAATTTTTTCAAAAAAAATTGAGTTAATATTAATGGTATAATCTCTTCTAATATTTTTCTATTGTTGAAGATTTATCCTACAAAAGTTTTGTCACTCTCACATATAATTGTTATGATAAACAAATATATATACATTATGTATTTCTTATTTAAAGCTTATATGACATTTGGATATACATTTCTCATAAACTTGAGTGAATATTAATGTTATAATTTCTTCTAATATTAACATATTTGTCATTTAATTAGTTGATGGTTTAAATGTGGCAAAAAAATCTCCATATTTATTTTGATGGTGTAAATTTCATTTGGTAGGAAAATAAAGTTTACTCAATTGAGAAGAGAAATATGTCTCGAAAAGAAATATGAGAGTTTTTTTGGTATACTAAAAGTTGGGAGATGGAATCTAAAGCAATCTAAGGTGATTGGTTAAATCCTTGTAATAGTAATATAAATTTCATTGAACTTTCATTTCTTTCAATTGAACTTTTCTCATATTTTTTGAAGGTAGTATATTTTAGTGGCAATACACTTTGAAAGTTATGTTTTCTGACGATATTTTTAATTGTCATTCTTATCAGTAATATGTTTTCATCACGTGAAGAAAATAGAGTTCTTCACATTTTGACATGTTAGTGGTAATTCCTAGTTTTTATTTAATATAATAATAAATAATCACATTTGAGACACATGAGAAATATTATTACCTTCCAATTATTTTTTTTTGTAAACTATATTCATATATAATTAATGTTTGGTGTATACAAGATAATATAACAATCTCAATATGATCAACATTCATATTTGAAAGAATATATTTATTGTTGTAAAACAAAACAAAAAATTATATAAATGACGAATCATGCAAAAAAAAAAATTAATCGCATCAATTAAATTGAATTTTTTTTATTTGTTTGTATAAATAAAATAATTAGAAAATATTTATAGGAATTTGGTTCTTTTATATCAACAGAAATTAAAAGCTCAAACATACCTAAAATCGACCACGAATAGCAAGATCATGAGACTGAGCAACCACTATATATGAAGTGTCATTTCTTTCTTTGTACTCTTTTGATTTTAAAAAATAAGGACTATATAAAACATTAAAATGATATAAGAGGTCATTCAAATTATAAATTCATTTCTATTTTTTTAGAAATATAAAATAAATTTAGCATGATAAATGGAGAAGAATGAGGAGAAAACATAACAAATTACAAAATAAAAAGAAAACAGATATTCAACCAAATGGAAAAAAAATAAAAAAGCAGGAAGAAAAAAAAGTAATTGAAAAGGAAAATCTAATAATTATAAGTAAATAATAATTTAATAAAACATAAAAAAGGAAATAAAATAAATTTTTATTCTTAAATCACGTTATTTTTATTTTATTTTTCTCTTTACTTATTTCTCTTAGTCTTTTTCAATTGAGAGTAGGAAATTAAAGAATTAAAATGAATAATTCAAATTACAAAAGCTATGCACATCCTTACTTGTATATAAGAAAAAATGTAATGAATTTATTAAACTAGATTTGAAAATACAATCTTATAATATAAAGGAGAAATACTAAGGGCCGGTTTGGATTGACTTTTGGCTTATGACTTATAATGCAAAAATCATAAGCTCTAACTTATAACTTTTGACTTATTTTTGTTATTTTGATTTTAAAGAAGTGCTTATAAACATTTTTACGGTTATTCATACACTTCAAAACTGCTCAAAAACTATTTTGACTTAAAAATACCTAAAAAAAAAAAAGTCAATCCAAAAGAAGCCTAAAACTACATAACGAAAAAGTTTACAATAAAATAATTTTTTATAAATTATTTAAACACACTTAAATAAATTATTCTATATTTGATATTTTTTATTGCACCTTTACTCTTTTTCGTTATTTTTTCTACTTCTTTTTCTTTATTTACTATTTATGTTTTGTGTCATAGATAATTCTAATTGCTTAATCATTGCTAAAAAAAAGTCATATACGCTACCAAGAAGTTACGATATGTATTTTTTTCATTTGGTTCTTTTATTTGCACATAAAATTCTAAATATTTACTTGTCCGTTAACTTATGGATATAATACCATAACACTTTCTAACATAATTTTTTGCTTTTTCTTTCTAATTTTTTTATCTTACTTAAAAATTTGCGTAATAATTTATATTTATAGTAAATCAGGCATAATAGTTTTCCATTGTTTTTTTATTAGGTATTTATTACACATTTATTTTCAATCAATATAACATACACTATCTAAAATTAAAATATGAGACTCTATATATAAAGCTGGATGATAAAAAAGTGATGTGACATATTTCAATGGCTAATGATCCTACTTATTTTTTGGGGGATCTTTTGGCATTTCCTCTAAATTTTTTCATTTTTATTTTATAAAATCATAAATTTATTTTACACCTCTTCAATAACATATATCTAAATTTTAATTAATTCAATAATGTCTATAACGCCTAACCTTTTATATTCATAACCTTCAAATTATTTTAAATATAAATTTATAACTCCTTAAAATCATACTTATAAAAATTTATTTTCAATATATGATGGTTATTTTATTTTCATTTTTCTACTCTTCATCTTTTATATATTTGGTTGACAATTTTTTTTGAATTTTTTAATTATTATTATATAAAAAGGAATGGTTCTATTACTACTCCACTTCAGTGTCATGTTTATAGTGTTTATTATGTTGGTAATCTTTTCTAATGTTATAATAATTAAGATAATAAGAATGATGTTGTATTATTTATTTATTTATTTATTTATATAGTTAACTAATGATTTCTATTTATTTTGTAGTTTATATAAAGTGTTGATATGTTATAAATTTATAATTTTATTTGGTTCAAAATAGTAAACTTGCGAATTTATTGAACATAATTATCTCTGCTCTTTCTATTTAGTTCCTCAAAAATGACAAAATAGTTCTTTTTCCCATGAGTATTCAATTAAAAATTATTCTATTACAAGTTTTAAATAACATTGAAATCTACAAAATAATATGTTGAGTTTCTTAAGTTTTTCATCTTTATTATATTTTTTTGCTAAAAAATCTGTTTATTCTTATTTATTTTTTACTTTTACAATTTTTCTATTTTTAATTGTAGAATAATAAATATGTCAATTAACTATTCATTTATATTCGTAAATATAAAACTTAAGGATCATTATTTTCATTACTATCATGATTTTATTATGATAATCTCTAAATAACTAATAGTCATTTTAGTTCTATAAATAAATGCATTGTAAGACTTTGGGCAAATGGTCACATTAGTCTTTTAAATTATTAAGATTTCGATACATAATTTATTCATCCATTAATTTGACTCGAAGAATAAAACTATTGAATGATCATCAACTTGTGGAAATAGATGTCAGACAAGAGTACGAAAGATTGTGTATTAATTTCGTGTATATTTTTTATTTTAATCAATAGGACTGTAAGCGGGGTAAAAATAATGTTGCATTCTTTTTCTATAGTTCTCTTTATTTTTTATTTTATACGGAAAGAAATTATGGTTATAAATTTAATCATATTTTTATGGTTCAAAAAAGTAACTTATGACTTTGTTGGAAGTTATCTAACTATGTCACGACCCAAATCCGGGCCGCGACTGGTACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAACTAAAAATACATAAGAAGCTAGTCCATGCTGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATTTAGTAAGACTGGCTTGAATTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACCAGAAGAAAACAATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATGTATTAAGAAATATCATAAAATCAACTAATAACCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGCTTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACATGGCACCCGTTCCATATTCTATCCTGGTGTCAGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGAAACGTGGCACTCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAATGTGGCACCCAATCCCCTAATCTCACCACTTTCGTTCACCAAGCCTTCTTTTATACCAAGGCATCATCACTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGTATTCAATAGTTTCATCATGCTTATTTATTCACAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACTTATCATTCGCTATTAAGAGTTTACGACGAATAGCATGAAAACCATAACCTACCTCCACCGAAGAATTGCGATCAACAAGCTGTCTTCTCAAAATCCTTGCTATCCTCTTCGTTTCTCTCTCTCTCTACTGGTTCTCTTTCTTTTTCTGTCTCTTCTTGTTCTTTCTATTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAAGTAGTATATAATTAAGAATAATAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAATGCCCCTTTAAAACTTAACCAGGAATCCGACTCCAACCGGGATTACGCAAGCTGTGACGGGCCGTCGCGCCTGTGACGGGCCGTCGCGCCTGCGACGGTCCGTCCTGCTGTCAGTCGCATAGTTCAGAAACTTGATTTTGGGTGAATGGCCTGTGACGGTCCTTCACACCTGTGACGGTCCGTCCTGCCACTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGCTCCGTCGTGCCCTTGACGGTCCATCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAAACGAGACCCTGCGATGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAAATAAAGTCTGCTGCTCAAAACGACTAAACGGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="30464" stop="120152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30764" g_stop="31251" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31252" i_stop="31847" i_length="596">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.376" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31848" g_stop="31864" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="499" r_length="15" r_score="0.529"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31865" i_stop="33914" i_length="2050">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.686" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33915" g_stop="33954" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="539" r_length="40" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33955" i_stop="34530" i_length="576">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34531" g_stop="34572" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="580" r_length="41" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30764" e_stop="31251"/>
          <exon e_start="31848" e_stop="31864"/>
          <exon e_start="33915" e_stop="33954"/>
          <exon e_start="34531" e_stop="34572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTGTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATTTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTATGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAATTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAACTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACATACACACACACACACACACACATATATATACGCACACACATACACACACACACACACACACACACATATATATATATATATTTACACATACACACACACACACATCTTAATCTAAAATTGCTGATGTGGCATGCCTCTAAGTTCTAAGAAAATATTTAGTTTTTTTGTTTTTTTTACTTTTTTTGAATTTTAAAATACAAAATATTACTTAAATATAGAAGATAATCACAATTAAAGTCATTATATAATAATTACTCTTATGTCTGTTATCTTTCTTTTTATATTCGTATGTTACTGATTATTTTACTAACTATAAATATCAAAGCAAATGTCTTGCACTATACAACATTTTATTTTTTTTCATTCAGAATTTCCTTTCAATTTTTTTTTCTTTTTATTTTATTTTATTTTGCTTCTTTTCTCTGCAAACTCTTTTCCAAGAAATTTCTTTCTTTTTTATTATTTTCTATTGATTTTTATTGTAACATTATTAGAGTTGTCTCAACAATTATTATTTTTGTACTTAATTTCATGCCTAATTTTTATTTGTTAGAATATGGGAGAGAGCAACATGTATATGACCTTTTTTGTGAAAGGAACTGGTCATGATCAAGCTTGAAAAATATCAATCATTCGCGATATAACAAACTTTATCTACATATATTTTTCTGTTGGAGGGTTGTATATAGTAATAGTGTGAATTCAAATATAACAAATTTTATTATTCTAGGATAAATGTCATGTTTTACAGTTATGAAATAAAATATTAATTTTCCATCAAATTATTATTATTATTATTTCTATTATTATTATTATTATTAATAATAATACTAATAATAATAATAATAATAATAATATTAACACATAAAACCTCTCCTTATACTATTCCTTAATAAGTAACATATTCATAAGAACTTACAGTAACAATCAATACGGAAAATACAACAAGATGAAGAAAAGAAGAACAAACAAAAAGTATGTATGTTATAAAAGTTTGACACATCATTCACCATTTATATACTATTATTTATATACTTTTAGTATACTAAGATAATGAACTCGATTGACACATCATTTTGTCATTTGAGAAGATTTTTTAACAAGTGATAAAAGTTTGAGAAATTTTTATCATTCATTAAGTATATATATTTTCGACTTATTTAAAATATCTATAATTGTTTGTCCAGTCCACCAAGTCAAATTCCAATATTATTGTAAATCACATTTTATATGAAATCTAAAATATTAAAAATTTATTGAACATAACTTTGTTTGTTGAATGAAAATCAAATCAGTAGGATCTTTTTAAAAAAAAATGTAGTTTAGAACATTCAAAGTGTTTTTTTTAAAATACAATTATAAATTGACTTTTCAATTAGTTACAAATTTGTAAAATGTAATTCACAAAGCCAGCATTGTAATTGTCTATTTTTCTCCTTTTTTGGATTATTTCTCATTTTTTCCTTAAAATATAAGTACATAAATGATAATTGAATAATAGATGAAATTGTCATTTAAAATAAATTAAAATTGACAATTATTGCCTTTTTTATCCATCTTATGTAATATTTTAGACTATTCATTTACCTTATTAATTTTTGCACATTAATGTCACTTTCTCTTCTCATGTCTTTTGATATTCCAAGTATGGAAAAGTATCCATATAAATTTGATTACAATTAGATATACATATTCCATAACAATCCATTTTTCATTAATTTTTTCAAAAAAAATTGAGTTAATATTAATGGTATAATCTCTTCTAATATTTTTCTATTGTTGAAGATTTATCCTACAAAAGTTTTGTCACTCTCACATATAATTGTTATGATAAACAAATATATATACATTATGTATTTCTTATTTAAAGCTTATATGACATTTGGATATACATTTCTCATAAACTTGAGTGAATATTAATGTTATAATTTCTTCTAATATTAACATATTTGTCATTTAATTAGTTGATGGTTTAAATGTGGCAAAAAAATCTCCATATTTATTTTGATGGTGTAAATTTCATTTGGTAGGAAAATAAAGTTTACTCAATTGAGAAGAGAAATATGTCTCGAAAAGAAATATGAGAGTTTTTTTGGTATACTAAAAGTTGGGAGATGGAATCTAAAGCAATCTAAGGTGATTGGTTAAATCCTTGTAATAGTAATATAAATTTCATTGAACTTTCATTTCTTTCAATTGAACTTTTCTCATATTTTTTGAAGGTAGTATATTTTAGTGGCAATACACTTTGAAAGTTATGTTTTCTGACGATATTTTTAATTGTCATTCTTATCAGTAATATGTTTTCATCACGTGAAGAAAATAGAGTTCTTCACATTTTGACATGTTAGTGGTAATTCCTAGTTTTTATTTAATATAATAATAAATAATCACATTTGAGACACATGAGAAATATTATTACCTTCCAATTATTTTTTTTTGTAAACTATATTCATATATAATTAATGTTTGGTGTATACAAGATAATATAACAATCTCAATATGATCAACATTCATATTTGAAAGAATATATTTATTGTTGTAAAACAAAACAAAAAATTATATAAATGACGAATCATGCAAAAAAAAAAATTAATCGCATCAATTAAATTGAATTTTTTTTATTTGTTTGTATAAATAAAATAATTAGAAAATATTTATAGGAATTTGGTTCTTTTATATCAACAGAAATTAAAAGCTCAAACATACCTAAAATCGACCACGAATAGCAAGATCATGAGACTGAGCAACCACTATATATGAAGTGTCATTTCTTTCTTTGTACTCTTTTGATTTTAAAAAATAAGGACTATATAAAACATTAAAATGATATAAGAGGTCATTCAAATTATAAATTCATTTCTATTTTTTTAGAAATATAAAATAAATTTAGCATGATAAATGGAGAAGAATGAGGAGAAAACATAACAAATTACAAAATAAAAAGAAAACAGATATTCAACCAAATGGAAAAAAAATAAAAAAGCAGGAAGAAAAAAAAGTAATTGAAAAGGAAAATCTAATAATTATAAGTAAATAATAATTTAATAAAACATAAAAAAGGAAATAAAATAAATTTTTATTCTTAAATCACGTTATTTTTATTTTATTTTTCTCTTTACTTATTTCTCTTAGTCTTTTTCAATTGAGAGTAGGAAATTAAAGAATTAAAATGAATAATTCAAATTACAAAAGCTATGCACATCCTTACTTGTATATAAGAAAAAATGTAATGAATTTATTAAACTAGATTTGAAAATACAATCTTATAATATAAAGGAGAAATACTAAGGGCCGGTTTGGATTGACTTTTGGCTTATG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A-----TTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGGTATCA--GA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTCTTAAGGGACGGTANGGGGACGCTTTT-ACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="38924" stop="39701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39224" g_stop="39400" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39224" e_stop="39400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGGTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="40476" stop="41434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40776" g_stop="41134" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40776" e_stop="41134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGATTTAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAATACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGG-CTTAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="40994" stop="42355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="42055" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="42055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTACCATCCTTCTTCTTTACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAGCTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGTGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAACCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGACTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCTTCCATTGCCAAGATAACCAAATCCACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGACACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="40994" stop="42254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="41954" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="41954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTACCATCCTTCTTCTTTACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAGCTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGTGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAACCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGACTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCTTCCATTGCCAAGATAACCAAATCCACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="41604" stop="42762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41904" g_stop="42462" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41904" e_stop="42462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGACACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCGGAACACTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="41608" stop="42971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41908" g_stop="42671" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41908" e_stop="42671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGACACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCGGAACACTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTAAATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTGGGAAGGATTTTGCCGTTGCTGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGTGAATCCACTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="41690" stop="42823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41990" g_stop="42523" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41990" e_stop="42523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCGGAACACTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTAAATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44271" stop="43435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43971" g_stop="43735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43971" e_stop="43735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTATAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAAGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44796" stop="36772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44496" g_stop="44239" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44238" i_stop="44085" i_length="154">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44084" g_stop="43827" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="515" r_length="257" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44496" e_stop="44239"/>
          <exon e_start="44084" e_stop="43827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAGTGATGATGCCTTGGTATAAAAGAAGGCTTGGTGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCATGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGAATATGGATCGGGTGCGACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTATAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAAGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATG..........................................................................................................................................................GATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687619" ref_strand="+" ref_description="SGN-E687619 [T3_tus_79_B20]">
      <seq>cctttacactagtatagggcaatggattatcccttggaaatctaaataagcaccaaaatttttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagaatatagtccgtacaggatactgacaaatagttggggtttaagacataagcaccaaaaattttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttggcttgataatcagtaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatggaagggaagttgtgggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgaagtaattgtggcatgaagggtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90560" stop="93825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90856" g_stop="91018" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91260" g_stop="91422" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="326" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91652" g_stop="91943" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="618" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92141" g_stop="92241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="719" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93422" g_stop="93525" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="823" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E687619" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90856" e_stop="91018"/>
          <exon e_start="91260" e_stop="91422"/>
          <exon e_start="91652" e_stop="91943"/>
          <exon e_start="92141" e_stop="92241"/>
          <exon e_start="93422" e_stop="93525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAG</genome_strand>
        <mrna_strand>CCTTTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCTAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG.................................................................................................................................................................................................................................................AATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGAAGTAATTGTGGCATGAAGGGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322623" ref_strand="+" ref_description="SGN-E322623 [cTOB-26-K9]">
      <seq>gtacactagtatagggcaatggattatcccttggaaatccaaataagcaccaaaatttttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagaatatagtccgtacaggatactgacaaatagttggggtttaagacataagcaccaaaaattttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttggcttgataatcagtaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactanactctggtttgtcagaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaaagcagtgtttgtgctttctggtattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90559" stop="92228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90859" g_stop="91018" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91260" g_stop="91422" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="323" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91652" g_stop="91928" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="600" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E322623" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90859" e_stop="91018"/>
          <exon e_start="91260" e_stop="91422"/>
          <exon e_start="91652" e_stop="91928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCT</genome_strand>
        <mrna_strand>GTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG.................................................................................................................................................................................................................................................AATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTANACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAAGCAGTGTTTGTGCTTTCTGGTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314606" ref_strand="+" ref_description="SGN-E314606 [cTOA-20-O18]">
      <seq>tcaattcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagaatatagtctgtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatagatattaagcagcaaaagaaactaaactctggtttgtccgaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactgcaattgggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatggaagggaagttgtgggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgtagtagttgtggcatgaagggtgcagcgcttggctgctacatgacgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90641" stop="93849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90941" g_stop="91018" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91019" i_stop="91651" i_length="633">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91652" g_stop="91943" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="370" r_length="292" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92141" g_stop="92241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="471" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93422" g_stop="93549" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="599" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E314606" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90941" e_stop="91018"/>
          <exon e_start="91652" e_stop="91943"/>
          <exon e_start="92141" e_stop="92241"/>
          <exon e_start="93422" e_stop="93549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTT</genome_strand>
        <mrna_strand>TCAATTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAGTCTGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATAGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCCGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTGGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCGCTTGGCTGCTACATGACGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330795" ref_strand="+" ref_description="SGN-E330795 [cTOD-10-E10]">
      <seq>gatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgaccatcagtaaagaatatagtccgtacaggatacctgacaaatagttggggtttaagacataagcaccaaaaattttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttggcttgataatcagtaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90650" stop="92471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90950" g_stop="91018" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.855" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91260" g_stop="91422" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="233" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91652" g_stop="91943" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="525" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92141" g_stop="92171" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="556" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E330795" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90950" e_stop="91018"/>
          <exon e_start="91260" e_stop="91422"/>
          <exon e_start="91652" e_stop="91943"/>
          <exon e_start="92141" e_stop="92171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCCGTACAGGATA-CTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATG</genome_strand>
        <mrna_strand>GATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACCATCAGTAAAG.................................................................................................................................................................................................................................................AATATAGTCCGTACAGGATACCTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254720" ref_strand="+" ref_description="SGN-E254720 [cLEG-29-J24]">
      <seq>ggggtttaagacataagcaccaaaaattttattcatatattctgtggcggtgtcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttggcttgataatcaggaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatggaagggaagctgtgggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90993" stop="93765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91293" g_stop="91422" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91652" g_stop="91943" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="422" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92141" g_stop="92241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="523" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93422" g_stop="93465" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="567" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E254720" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91293" e_stop="91422"/>
          <exon e_start="91652" e_stop="91943"/>
          <exon e_start="92141" e_stop="92241"/>
          <exon e_start="93422" e_stop="93465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGG</genome_strand>
        <mrna_strand>GGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGGTGTCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGGAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGCTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254590" ref_strand="+" ref_description="SGN-E254590 [cLEG-29-J12]">
      <seq>aaaaattttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttggcttgataatcagtaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgccagaaatgagcttacaaagtcatgatcatattctgcaaagatgccctatttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgctcagccaaaagcagttatagatcaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91014" stop="92193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91314" g_stop="91422" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91652" g_stop="91893" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="351" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E254590" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91314" e_stop="91422"/>
          <exon e_start="91652" e_stop="91893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATC</genome_strand>
        <mrna_strand>AAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGCCAGAAATGAGCTTACAAAGTCATGATCATATTCTGCAAAGATGCCCTATTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGCTCAGCCAAAAGCAGTTATAGATCAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546445" ref_strand="+" ref_description="SGN-E546445 [TUS-69-N1]">
      <seq>gaaaacctcactttttgctttgacaatcagtgaaggtgataaactatcgatttttcaaacaaagaagcagtttagtaggacgaatcaaggggaacagcagtttcatgcttgctaactaataattttgtgattcttgggttataataagttttaatttgtttgttagattgaaaaaatggaacatgcaaaagtttttgttagtattctctcctatatgatttttttttttttaacgctttacacaaatttgatcctctctttccagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatatgctccaaagatgccctagttctgaaattgttgctgattccaactgcaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacatttatcagtacaggagaaacttcaagctatcagctgtcttgctttatacttttcttaatactcactccactgctatcatttggaaagttatctaattattttgtggtccactcctttgtttatctgcacatattctgctatatgtagcccattcttgatactaactttttcattttttgtcaaatatttgtagaaaactggaccttttttgtacttgcaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91088" stop="92471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91388" g_stop="92172" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E546445" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91388" e_stop="92172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAA-GCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGG</genome_strand>
        <mrna_strand>GAAAACCTCACTTTTTGCTTTGACAATCAGTGAAGGTGATAAACTATCGATTTTTCAAACAAAGAAGCAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATAATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTTGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTTTTTTTTTTAACGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATGCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCAC--A--T---TTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGTAGAAAACTGGACCTTTTTTGTAC-TTGCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358754" ref_strand="+" ref_description="SGN-E358754 [cLHT-24-M3]">
      <seq>aaaacctcactttttgctttgacaatcagtgaaggtgataaactatcgatttttcaaacaaagaagcagtttagtaggacgaatcaaggggaacagcagtttcatgcttgctaactaataattttgtgattcttgggttataataagttttaatttgtttgttagattgaaaaaatggaacatgcaaaagtttttgttagtattctctcctatatgatttttttttttttaacgctttacacaaatttgatcctctctttccagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatatgctccaaagatgccctagttctgaaattgttgctgattccaactgcaatttggagtataaaatatgtgaatctcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91089" stop="92159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91389" g_stop="91859" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E358754" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91389" e_stop="91859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAA-GCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAAT</genome_strand>
        <mrna_strand>AAAACCTCACTTTTTGCTTTGACAATCAGTGAAGGTGATAAACTATCGATTTTTCAAACAAAGAAGCAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATAATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTTGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTTTTTTTTTTAACGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATGCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710226" ref_strand="+" ref_description="SGN-E710226 [FA54CH05]">
      <seq>cccgttaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatggaagggaagttgtgggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgtagtagttgtggcatgaagggtgcagcacttggctgctacatgacgtcttgcaggaggagttatcatgtgccctgtgcatttgaaatccaggattgccaatgggatatggagaactatgtgatgctgtgcccagtccataaatctgttacatttccaagtgagaagtcaaagtctatagaacatatcaggagggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggaccaaaagaatgggttctttgtgggtctgctctatcctcacaagataagtatatgctggtgaaatttgctggcatgtgtggtgcaactgtgtgcaagttctggaaaccaaatgtccacacatgctgctcccaccactgatgtaaagggtgcatgcaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91573" stop="99747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91869" g_stop="91943" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="77" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92141" g_stop="92241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="178" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93422" g_stop="93608" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="365" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93709" g_stop="93818" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="475" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98735" g_stop="98825" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="566" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99337" g_stop="99447" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="678" r_length="112" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E710226" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91869" e_stop="91943"/>
          <exon e_start="92141" e_stop="92241"/>
          <exon e_start="93422" e_stop="93608"/>
          <exon e_start="93709" e_stop="93818"/>
          <exon e_start="98735" e_stop="98825"/>
          <exon e_start="99337" e_stop="99447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATGGTAAGTAAATACAACTAGAAGCTAACATATTTATCAAATTAAGCATTGTAAAGTTTTCATCTTCTTATTTTCCCTTAAAAGTTCACATATTTAATTACAGGAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTATCTGCAGTGACTATATCCTCTGCTAGTTCTATCATATGGCCCTTGTATCTATTTAAGAGTGTTTGATCAGTCTTACAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTGGCATGTTTCCAGTCAAAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACTAGAGAAGTCAACTTTTGATGGTCATGCATTGATGGTTTAACTCTACGTTTGTCAACGTTAGTTGATGTCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGT-CACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGA</genome_strand>
        <mrna_strand>CGTTAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG....................................................................................................GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTACATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAGGAGGGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCACAAGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGCTGGTGAAATTTGCTGGCATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCCACACATGCTGCTCCCACCACTGATGTAAAGGGTGCATGCACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711077" ref_strand="+" ref_description="SGN-E711077 [FA57DG08]">
      <seq>ttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgtagtacttgtggcatgaagggtgcagcgcttggctgctacatgacgtcttgcaggaggagttatcatgtgccctgtgcatttgaaatccaggattgccaatgggatatggagaactttgtgatgctgtgcccagttcataaatctgttaaatttccaagtgagaagtcaaagtctatagaacatatcaggagggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91893" stop="99074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92193" g_stop="92241" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93422" g_stop="93608" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="236" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93709" g_stop="93818" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="346" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98735" g_stop="98774" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="386" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E711077" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92193" e_stop="92241"/>
          <exon e_start="93422" e_stop="93608"/>
          <exon e_start="93709" e_stop="93818"/>
          <exon e_start="98735" e_stop="98774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATGGTAAGTAAATACAACTAGAAGCTAACATATTTATCAAATTAAGCATTGTAAAGTTTTCATCTTCTTATTTTCCCTTAAAAGTTCACATATTTAATTACAGGAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGAT</genome_strand>
        <mrna_strand>TTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTACTTGTGGCATGAAGGGTGCAGCGCTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG....................................................................................................GAGAACTTTGTGATGCTGTGCCCAGTTCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAGGAGGGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248344" ref_strand="+" ref_description="SGN-E248344 [cLEG-1-F16]">
      <seq>ttggcaagagctacaaaactcaagtgtagtagttgtggcatgaagggtgcagggcttggctgctacatgacgtcttgcacgaggagttatcatgtgccctgtgcatttgaaatccaggattgccaatgggatatggagaactatgtgatgctgtgcccagtccataaatctgttaaatttccaagtgagaagtcaaagtctatagaacatatcaggagggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggatcaaaagaatgggttctttgtgggtctgctctatcctcagaagataagtatatgtcggtgaaatttgctggtatgtgtggtgcaactgtgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="93174" stop="99683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93474" g_stop="93608" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93709" g_stop="93818" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="245" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98735" g_stop="98825" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99337" g_stop="99383" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="383" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E248344" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93474" e_stop="93608"/>
          <exon e_start="93709" e_stop="93818"/>
          <exon e_start="98735" e_stop="98825"/>
          <exon e_start="99337" e_stop="99383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATGGTAAGTAAATACAACTAGAAGCTAACATATTTATCAAATTAAGCATTGTAAAGTTTTCATCTTCTTATTTTCCCTTAAAAGTTCACATATTTAATTACAGGAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTATCTGCAGTGACTATATCCTCTGCTAGTTCTATCATATGGCCCTTGTATCTATTTAAGAGTGTTTGATCAGTCTTACAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTGGCATGTTTCCAGTCAAAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACTAGAGAAGTCAACTTTTGATGGTCATGCATTGATGGTTTAACTCTACGTTTGTCAACGTTAGTTGATGTCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAA</genome_strand>
        <mrna_strand>TTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGGGCTTGGCTGCTACATGACGTCTTGCACGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG....................................................................................................GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAGGAGGGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGATCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTCGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265948" ref_strand="+" ref_description="SGN-E265948 [cLEI-6-M5]">
      <seq>ggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggaccaaaagaatgggttctttgtgggtctgctctatcctcagaagataagtacatgttggtgaaatttgatgatatgtgtggtgcaactgcgtgcaagttctggagaccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatgaaatttctcatggcgattttgagtggaaaatggatcccaactatggactgggtaaaagcttgtgttgcagcaaatggtccagtaaatgaagaacattatgaaataagtctagtcaattatggccgttctgggggccccaaagctggaaggttaatggcctcagctaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcacagtcattcagagtgaggagcagttggtgaaacagaatcatgctgcacagggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="93492" stop="100572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93792" g_stop="93818" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98735" g_stop="98825" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="118" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99337" g_stop="99502" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="284" r_length="166" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99842" g_stop="99960" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="403" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100117" g_stop="100272" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="559" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E265948" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93792" e_stop="93818"/>
          <exon e_start="98735" e_stop="98825"/>
          <exon e_start="99337" e_stop="99502"/>
          <exon e_start="99842" e_stop="99960"/>
          <exon e_start="100117" e_stop="100272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTATCTGCAGTGACTATATCCTCTGCTAGTTCTATCATATGGCCCTTGTATCTATTTAAGAGTGTTTGATCAGTCTTACAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTGGCATGTTTCCAGTCAAAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACTAGAGAAGTCAACTTTTGATGGTCATGCATTGATGGTTTAACTCTACGTTTGTCAACGTTAGTTGATGTCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACTGTAAGCACTGTTTCCTGTTATATAAAATTGTTTGTGGGATAGGTTTTTCATTTGGTTCTCCATGGAATGAGGGTGAACGTTTAATCGCTATTGAATCAAGAAATGCAATAAAGTAGAATGTGTGGGGGATATAAGAATAAGTTGTTTTGTTATTGAGGGAAGAGAAGGAAATACCTGGATAGATGTGTGACTTCTCCAGAGCCACTTTGAATGCATGGACATTTTTTCGGAAATAGTTTGCTTGGCCTGGGTCAATAGTTAATTAGGTGTCTAATGAAAAGACGGATGATTAATTTCTTTTAATTCCATTCTCCTACCATGGAACTTGTTTATTTGCAGGGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAATGTAAGTATCTGGTTATTGCAGCACTAGAGAAACTAGTTTATTATATTCCTTGTGAATAAGCTTGATGGCTAAAGATATTTTTTTCTAGTTCTCAACTGAGGTGGCACATATTTAAAGCTTTAGTATCGAGTAACCAATTATCCCTTTATGTTACAGGGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACT</genome_strand>
        <mrna_strand>GGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTTGGTGAAATTTGATGATATGTGTGGTGCAACTGCGTGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAATTTCTCATGGCGATTTTGAGTGGAAAATGGATCCCAACTATGGACT...................................................................................................................................................................................................................................................................................................................................................GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACATTATGAAATAAGTCTAGTCAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTAATGGCCTCAGCTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACAGTCATTCAGAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552837" ref_strand="+" ref_description="SGN-E552837 [cTSB-5-D13]">
      <seq>atcattgatgcatgtcctgggaatagcaatgtatgaaagatccacttattttagtatgttcacatttatttgcttacttgtatggtatttgtactttagcctactttaatgcccttttattttgagaaagcctttgaagtaaaataaatttttacttctttttgcttggaattgttagctgaaaatggtgcgtttcagacattattaatccatcgtattggttttttgacattttgcagtacatgttggtgaaatttgatgatatgtgtggtgcaactgcgtgcaagttctggagaccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatgaaatttctcatggcgattttgagtggaaaatggatcccaactatggactgggtaaaagcttgtgttgcagcaaatggtccagtaaatgaagaacattatgaaataagtctagtcaattatggccgttctgggggccccaaagctggaaggttaatggcctcagctaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcacagtcattcagagtgaggagcagttggtgaaacagaatcatgctgcacagggaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagactagcagaagctgaggatctagccgagcnaatcggttctcagactgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctaatgagtgatcgcaacaagtttttgtgncactgaaatacttccacttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="98798" stop="100809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99098" g_stop="99502" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99842" g_stop="99960" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100117" g_stop="100509" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="916" r_length="392" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E552837" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99098" e_stop="99502"/>
          <exon e_start="99842" e_stop="99960"/>
          <exon e_start="100117" e_stop="100509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCAT--TATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACTGTAAGCACTGTTTCCTGTTATATAAAATTGTTTGTGGGATAGGTTTTTCATTTGGTTCTCCATGGAATGAGGGTGAACGTTTAATCGCTATTGAATCAAGAAATGCAATAAAGTAGAATGTGTGGGGGATATAAGAATAAGTTGTTTTGTTATTGAGGGAAGAGAAGGAAATACCTGGATAGATGTGTGACTTCTCCAGAGCCACTTTGAATGCATGGACATTTTTTCGGAAATAGTTTGCTTGGCCTGGGTCAATAGTTAATTAGGTGTCTAATGAAAAGACGGATGATTAATTTCTTTTAATTCCATTCTCCTACCATGGAACTTGTTTATTTGCAGGGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAATGTAAGTATCTGGTTATTGCAGCACTAGAGAAACTAGTTTATTATATTCCTTGTGAATAAGCTTGATGGCTAAAGATATTTTTTTCTAGTTCTCAACTGAGGTGGCACATATTTAAAGCTTTAGTATCGAGTAACCAATTATCCCTTTATGTTACAGGGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGC</genome_strand>
        <mrna_strand>ATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATGTTCACATTTATTTGCTT--ACTTGTATGGTATTTGTACTTTAGCCTACTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAATAAATTTTTACTTCTTTTTGCTTGGAATTGTTAGCTGAAAATGGTGCGTTTCAGACATTATTAATCCATCGTATTGGTTTTTTGACATTTTGCAGTACATGTTGGTGAAATTTGATGATATGTGTGGTGCAACTGCGTGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAATTTCTCATGGCGATTTTGAGTGGAAAATGGATCCCAACTATGGACT...................................................................................................................................................................................................................................................................................................................................................GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACATTATGAAATAAGTCTAGTCAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTAATGGCCTCAGCTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACAGTCATTCAGAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGACTAGCAGAAGCTGAGGATCTAGCCGAGCNAATCGGTTCTCAGACTGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTAATGAGTGATCGCAACAAG-TTTTTGTGNCACTGAAATACTTCCACTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232934" ref_strand="+" ref_description="SGN-E232934 [cLED-6-A11]">
      <seq>aaatggtccagtaaatgaagaactttatgaaataagtctagacaattatggccgttctgggggccccaaagctggaaggttgatggcctcaactaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcagtgtcattcacagtgaggagcagttggtgaaacagaatcatgctgcacaggaaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagattagcagaagctgaggatctagccgagcaaatgggttctcagaccgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctgatgagtgatcgcaacaagttttttgtgcaactgaaatacttccacttgtggcagaagaacaaaagtagttgtacattttctgcacctgggaaatatagttgaatcttaaatgctaaattttgtgtataaatgtgaaagagatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="99564" stop="100904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99864" g_stop="99960" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100117" g_stop="100604" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="585" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E232934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99864" e_stop="99960"/>
          <exon e_start="100117" e_stop="100604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAATGTAAGTATCTGGTTATTGCAGCACTAGAGAAACTAGTTTATTATATTCCTTGTGAATAAGCTTGATGGCTAAAGATATTTTTTTCTAGTTCTCAACTGAGGTGGCACATATTTAAAGCTTTAGTATCGAGTAACCAATTATCCCTTTATGTTACAGGGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTAC</genome_strand>
        <mrna_strand>AAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCAGTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378355" ref_strand="+" ref_description="SGN-E378355 [TUS-19-M12]">
      <seq>aaatggtccagtaaatgaagaactttatgaaataagtctagacaattatggccgttctgggggccccaaagctggaaggttgatggcctcaactaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcagtgtcattcacagtgaggagcagttggtgaaacagaatcatgctgcacaggaaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagattagcagaagctgaggatctagccgagcaaatgggttctcagaccgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctgatgagtgatcgcaacaagttttttgtgcaactgaaatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="99564" stop="100798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99864" g_stop="99960" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100117" g_stop="100498" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="479" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E378355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99864" e_stop="99960"/>
          <exon e_start="100117" e_stop="100498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAATGTAAGTATCTGGTTATTGCAGCACTAGAGAAACTAGTTTATTATATTCCTTGTGAATAAGCTTGATGGCTAAAGATATTTTTTTCTAGTTCTCAACTGAGGTGGCACATATTTAAAGCTTTAGTATCGAGTAACCAATTATCCCTTTATGTTACAGGGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTT</genome_strand>
        <mrna_strand>AAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCAGTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234962" ref_strand="+" ref_description="SGN-E234962 [cLEL-6-P1](-)">
      <seq>agttggtgaaacagaatcatgctgcacagggaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagactagcagaagctgaggatctagccgagcaaatcggttctcagactgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctaatgagtgatcgcaacaagttttttgtgcaactgaaatacttccacttatggcagaagaacaaaagtagttgtacattttctgcacctggaaaatatagttgaaaatcttaaatgctaaaattttgtgtataaatgtgaaagagatattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="99938" stop="100906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100238" g_stop="100603" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="387"/>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E234962" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100238" e_stop="100603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTG--AATCTTAAATGCT-AAATTTTGTGTATAAATGTGAAAGAGATATTA</genome_strand>
        <mrna_strand>AGTTGGTGAAACAGAATCATGCTGCACAGGGAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGACTAGCAGAAGCTGAGGATCTAGCCGAGCAAATCGGTTCTCAGACTGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTAATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTATGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGAAAATATAGTTGAAAATCTTAAATGCTAAAATTTTGTGTATAAATGTGAAAGAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234866" ref_strand="+" ref_description="SGN-E234866 [cLEL-6-P1](-)">
      <seq>ggttgctttgaagaaaaaatcagaattttgctgcaaagactagcagaagctgaggatctagccgagcaaatcggttctcagactgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctaatgagtgatcgcaacaagttttttgtgcaactgaaatacttccacttatggcagaagaacaaaagtagttgtacattttctgcacctggaaaatatagttgaaaatcttaaatgctaaaattttgtgtataaatgtgaaagagatattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="100015" stop="100906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100315" g_stop="100603" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="310"/>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-E234866" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100315" e_stop="100603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTG--AATCTTAAATGCT-AAATTTTGTGTATAAATGTGAAAGAGATATTA</genome_strand>
        <mrna_strand>GGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGACTAGCAGAAGCTGAGGATCTAGCCGAGCAAATCGGTTCTCAGACTGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTAATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTATGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGAAAATATAGTTGAAAATCTTAAATGCTAAAATTTTGTGTATAAATGTGAAAGAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="101891" stop="101000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101591" g_stop="101300" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101591" e_stop="101300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAAGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTCGGTGTTGGCAAGGTAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGAGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="101890" stop="101116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101590" g_stop="101416" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101590" e_stop="101416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAAGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTCGGTGTTGGCAAGGTAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4404" PGL_stop="10780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4404" e_stop="4499"/>
            <exon e_start="10301" e_stop="10780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="4404" e_stop="4499" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4500" i_stop="10300" i_length="5801"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="10301" e_stop="10780" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4404" stop="4499"/>
              <exon start="10301" stop="10780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGTAAAGGCGTCCCCCTACCGTTCCTCAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTT : TGTCACGACCCAAACCGGGTTGCGACTGGCACCCATACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATATAATATAAACAGAAAGTAATGCGGAAGACTTAAACTCATAAATAATCAACTTCTATAACTCAAAAACTTATCACTATCCCCAGAATCTGGAAGTCATCATCACAAGAACATCTACCTTTAAATTACTAAACTAAGAGTATCTAAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGGCGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATAATCGGCCAA</gDNA_template>
            <first_frame> E  K  *  R  R  P  P  T  V  P  Q  D  S  T  R  L  V  L  V  *  *  D  Q  R  T  *  C  S  D  T  K  F  :  C  H  D  P  N  R  V  A  T  G  T  H  T  Y  P  P  M  *  A  N  Q  P  I  *  T  L  T  F  Q  Y  N  I  N  R  K  *  C  G  R  L  K  L  I  N  N  Q  L  L  *  L  K  N  L  S  L  S  P  E  S  G  S  H  H  H  K  N  I  Y  L  *  I  T  K  L  R  V  S  K  K  L  K  I  H  K  K  L  V  H  A  G  S  S  R  H  Q  D  M  K  E  K  I  Q  S  K  L  E  A  L  A  H  P  E  D  P  V  W  R  R  L  A  *  V  T  V  E  S  K  M  T  A  R  L  L  H  S  T  N  N  K  K  K  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  G  Q </first_frame>
            <second_frame>  K  S  K  G  V  P  L  P  F  L  K  T  L  L  D  S  F  L  C  D  E  T  N  E  P  N  A  L  I  P  S  F :   V  T  T  Q  T  G  L  R  L  A  P  I  L  T  L  L  C  E  R  T  N  Q  S  K  P  *  H  F  N  I  I  *  T  E  S  N  A  E  D  L  N  S  *  I  I  N  F  Y  N  S  K  T  Y  H  Y  P  Q  N  L  E  V  I  I  T  R  T  S  T  F  K  L  L  N  *  E  Y  L  K  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  S  S  P  S  *  K  R  *  L  T  L  K  I  R  C  G  E  D  W  L  E  L  L  L  S  R  R  *  R  H  V  C  C  T  P  Q  I  T  R  R  K  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  *  S  A   </second_frame>
            <third_frame>   K  V  K  A  S  P  Y  R  S  S  R  L  Y  *  T  R  S  C  V  M  R  P  T  N  L  M  L  *  Y  Q  V   : L  S  R  P  K  P  G  C  D  W  H  P  Y  L  P  S  Y  V  S  E  P  T  N  L  N  L  N  I  S  I  *  Y  K  Q  K  V  M  R  K  T  *  T  H  K  *  S  T  S  I  T  Q  K  L  I  T  I  P  R  I  W  K  S  S  S  Q  E  H  L  P  L  N  Y  *  T  K  S  I  *  K  A  K  N  T  *  E  A  S  P  C  R  K  F  K  A  S  R  H  E  G  E  D  P  V  Q  A  R  S  V  S  S  P  *  R  S  G  V  A  K  T  G  L  S  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  E  E  K  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  N  R  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14308" PGL_stop="16939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14308" e_stop="16939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="14308" e_stop="16939" e_length="2632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14308" stop="15020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14308" stop="14903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14308" stop="14833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14379" stop="15058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14897" stop="15652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15585" stop="16372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15661" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16220" stop="16939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16223" stop="16886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTATCCCAGGCTTGGCTAACGTCACCTTTTTAGCATTACAATCCAAGATTGCAAATTGCAGAGAAAGCCAAGTCATGCCCAGAATCACATCAAAATCATCCATTGCCAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTACCGCAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCTCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCGCCACGTTCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATCTCCCCATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGTAGAAGTGTTGACCGGTTTGAGGTGGTCCCCCAACTACAGTCTGTAGTAAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGACTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGAGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCATTCTACTATACCCATCTTGTGTACTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTTATCACTTGTCATTACAGGCCCTGTAGGCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAAAAAACACTGGGGGTGTCTGGCCCTGATTAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGAAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  D  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  S  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  H  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  I  E  V  N  I  P  I  *  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  Y  P  R  L  G  *  R  H  L  F  S  I  T  I  Q  D  C  K  L  Q  R  K  P  S  H  A  Q  N  H  I  K  I  I  H  C  Q  D  N  Q  I  Y  I  S  V  S  P  H  K  V  Y  H  T  R  P  I  Y  L  Y  R  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  A  T  F  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  F  N  L  P  I  H  N  I  L  W  S  Q  S  *  A  P  R  R  S  V  D  R  F  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  T  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  R  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  D  E  S  V  V  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  T  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  S  S  L  E  T  D  K  S  Q  T  P  H  R  T  I  L  L  Y  P  S  C  V  L  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  Y  H  L  S  L  Q  A  L  *  A  D  E  E  M  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  *  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  E  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  L  L  P  *  Y  Q  M  G  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  T  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  F  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  R  L  F  N  N  S  *  S  C  A  F  N  T  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  D  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  K  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  I  P  G  L  A  N  V  T  F  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  M  P  R  I  T  S  K  S  S  I  A  K  I  T  K  S  T  *  V  F  L  P  T  K  F  T  T  Q  D  L  Y  T  F  T  A  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  L  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  S  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  S  I  S  P  S  I  T  F  S  G  V  N  H  R  P  L  V  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  *  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  D  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  T  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  E  P  F  Y  Y  T  H  L  V  Y  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  C  R  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  K  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  K  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  Y  C  P  S  I  R  W  A </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  G  S  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  V  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  V  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  M  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  C  P  E  S  H  Q  N  H  P  L  P  R  *  P  N  L  H  K  C  F  S  P  Q  S  L  P  H  K  T  Y  I  P  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  S  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  H  F  G  D  H  H  Y  L  D  R  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  P  *  H  S  L  E  S  I  I  G  P  S  *  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  K  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  D  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  C  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  E  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  T  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  L  S  L  V  I  T  G  P  V  G  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  K  N  T  G  G  V  W  P  *  L  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16532" stop="16786"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLITCHYRPCRQTRKCAYFQWNIHAGSHSSRMLYLRSLRCWCKKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14572" stop="14811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMSIPRSKSSLWHIRCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15322" stop="15537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHLFSITIQDCKLQRKPSHAQNHIKIIHCQDNQIYISVSPHKVYHTRPIYLYRRLTHRSRNTNRHIKKFTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15080" stop="15280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSISLSDGIPGRSAGNTSRNSRTTKTDSIEGTWVVSSLRCAKKAKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15733" stop="15930"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAILVTTITSTATFSRMTASTMTTSTSSYWGSITLSGTIFPNMFNLPIHNILWSQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14504" stop="14701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRFKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16041" stop="16235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSDFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRIRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16316" PGL_stop="14880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16316" e_stop="16130"/>
            <exon e_start="15393" e_stop="14880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="16316" e_stop="16130" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16129" i_stop="15394" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="15393" e_stop="14880" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16316" stop="16130"/>
              <exon start="15393" stop="14880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  T  T  D  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  G  H  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  K  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  I  R  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  S  V  K  G  T  T  S  R  V  I  E  Q  T  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  Q  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  K  V  T  L  A  K  P  G  I  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  S  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  V  L  K  A  Q  L  Q  E  L  L  N  K  R  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  N  N  G  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  A  *  L  G  F  L  C  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  *  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  *  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  C  *  R  H  N  F  K  S  Y  *  T  N  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16315" stop="16130"/>
                    <exon start="15393" stop="14881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQQRIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSLQFAILDCNAKKVTLAKPGIDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVLVVREFLDVFPADLPGMPSDRDIDFYIDLEPGTRPISIPPYRMAPAELRVLKAQLQELLNKRFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17801" PGL_stop="17017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17801" e_stop="17017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="17801" e_stop="17017" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17304" stop="17017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCACCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTTAGATACTCTTAGTTTAGTAATTTAAAGGTAGATGTTCTTGTGATGATGACTTCCAGATTCTGGGGATAGTGATAAGTTTTTGAGTTATAGAAGTTGATTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTTAAATGTTAAGGTTTAGATTGGTTTGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAATCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCATTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAGGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAAAATTTCACTCTTTCATACTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTTG</gDNA_template>
            <first_frame> L  V  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  P  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  F  R  Y  S  *  F  S  N  L  K  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  V  F  E  L  *  K  L  I  I  Y  E  F  K  S  S  A  L  L  S  V  Y  I  I  F  K  C  *  G  L  D  W  F  V  R  S  H  R  R  V  S  V  G  A  N  R  N  P  V  W  V  V  T  N  L  V  S  E  H  *  V  H  W  S  H  H  T  R  I  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  N  F  T  L  S  Y  F  L  S  C  Y  Y  L  S  P  I  G  I  *  V  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  W  S  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  H  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  D  T  L  S  L  V  I  *  R  *  M  F  L  *  *  *  L  P  D  S  G  D  S  D  K  F  L  S  Y  R  S  *  L  F  M  S  L  S  L  P  H  Y  F  L  F  I  L  Y  L  N  V  K  V  *  I  G  L  F  A  H  I  G  G  *  V  W  V  P  I  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  I  G  L  I  T  Q  E  *  V  *  *  S  L  R  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  K  I  S  L  F  H  T  F  F  R  A  T  T  *  V  Q  L  V  S  R  *  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  T  T  P  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  *  I  L  L  V  *  *  F  K  G  R  C  S  C  D  D  D  F  Q  I  L  G  I  V  I  S  F  *  V  I  E  V  D  Y  L  *  V  *  V  F  R  I  T  F  C  L  Y  Y  I  *  M  L  R  F  R  L  V  C  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  G  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17211" stop="17017"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFRKKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29476" PGL_stop="38565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29476" e_stop="29863"/>
            <exon e_start="38442" e_stop="38565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="29476" e_stop="29863" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29864" i_stop="38441" i_length="8578"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="38442" e_stop="38565" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29476" stop="29863"/>
              <exon start="38442" stop="38565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATATGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCACGACGGACCGTCACAGGCGTGACGGACCGTCACGGAGACTTTAGTGAAAATCTATTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCAAGGCAAAATCGGATTTCCTTACACGTTTTAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG : GTTTTGAAACGAGACCCTGCGACGCTCCGTCGTGCCCTTGACGGTCCATCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACAGGTCGTTACA</gDNA_template>
            <first_frame> K  T  L  R  K  Y  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  T  T  D  R  H  R  R  D  G  P  S  R  R  L  *  *  K  S  I  L  *  T  L  R  R  P  A  E  R  T  V  A  G  T  T  A  R  H  R  L  H  K  S  K  A  K  S  D  F  L  T  R  F  R  D  V  F  G  L  F  L  P  *  L  *  I  L  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E   : G  F  E  T  R  P  C  D  A  P  S  C  P  *  R  S  I  V  G  S  V  A  S  A  S  F  S  R  I  E  V  C  C  S  K  R  L  N  R  S  L   </first_frame>
            <second_frame>  K  H  L  E  N  M  K  L  G  T  E  N  R  L  S  E  L  H  D  G  M  A  R  R  T  V  T  G  V  T  D  R  H  G  D  F  S  E  N  L  F  S  E  L  C  D  D  L  Q  N  G  P  S  Q  A  R  R  P  V  T  G  C  T  N  P  R  Q  N  R  I  S  L  H  V  L  G  T  F  L  D  Y  S  F  L  N  Y  R  F  C  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  :  V  L  K  R  D  P  A  T  L  R  R  A  L  D  G  P  S  W  G  P  S  L  L  P  V  F  P  E  L  K  S  V  A  Q  N  D  *  T  G  R  Y  </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  M  T  E  W  H  D  G  P  S  Q  A  *  R  T  V  T  E  T  L  V  K  I  Y  S  L  N  F  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  Q  I  Q  G  K  I  G  F  P  Y  T  F  *  G  R  F  W  T  I  P  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G :   F  *  N  E  T  L  R  R  S  V  V  P  L  T  V  H  R  G  V  R  R  F  C  Q  F  F  Q  N  *  S  L  L  L  K  T  T  K  Q  V  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29477" stop="29779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLENMKLGTENRLSELHDGMARRTVTGVTDRHGDFSENLFSELCDDLQNGPSQARRPVTGCTNPRQNRISLHVLGTFLDYSFLNYRFCGFILITQILGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30764" e_stop="31251"/>
            <exon e_start="31848" e_stop="31864"/>
            <exon e_start="33915" e_stop="33954"/>
            <exon e_start="34531" e_stop="34572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.376" e_score="0.947"/>
          <exon-intron don_prob="0.969" acc_prob="0.686" e_score="0.529"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="30764" e_stop="31251" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.376">
            <gDNA_intron_boundary i_start="31252" i_stop="31847" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="0.529">
            <gDNA_exon_boundary e_start="31848" e_stop="31864" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.686">
            <gDNA_intron_boundary i_start="31865" i_stop="33914" i_length="2050"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="33915" e_stop="33954" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33955" i_stop="34530" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="34531" e_stop="34572" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30764" stop="31251"/>
              <exon start="31848" stop="31864"/>
              <exon start="33915" stop="33954"/>
              <exon start="34531" stop="34572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTGTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATTTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTATGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAATTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAACTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACA : GAACTGGTCATGATCAA : GAATTTGGTTCTTTTATATCAACAGAAATTAAAAGCTCAA : GAGAAATACTAAGGGCCGGTTTGGATTGACTTTTGGCTTATG</gDNA_template>
            <first_frame> L  T  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  C  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  *  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  F  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  L  M  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  Y  *  *  V  *  F  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  N  C  G  C  Q  S  R  P  G  F  G  S  *  Q :   N  W  S  *  S   : R  I  W  F  F  Y  I  N  R  N  *  K  L  K :   R  N  T  K  G  R  F  G  L  T  F  G  L   </first_frame>
            <second_frame>  *  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  V  M  F  F  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  I  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  D  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  F  I  N  E  F  N  S  S  A  L  L  S  V  V  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  T  V  G  A  S  R  G  P  D  L  G  R  D   : R  T  G  H  D  Q  :  E  F  G  S  F  I  S  T  E  I  K  S  S   : R  E  I  L  R  A  G  L  D  *  L  L  A  Y  </second_frame>
            <third_frame>   D  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  L  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  F  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  K  L  L  E  L  V  V  *  S  R  C  S  Y  D  D  D  F  Q  I  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  L  L  M  S  L  I  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  L  W  V  P  V  A  A  R  I  W  V  V  T  :  E  L  V  M  I  K :   N  L  V  L  L  Y  Q  Q  K  L  K  A  Q  :  E  K  Y  *  G  P  V  W  I  D  F  W  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39224" PGL_stop="39400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39224" e_stop="39400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="39224" e_stop="39400" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39224" stop="39400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGGTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  G  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  V  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40776" PGL_stop="41134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40776" e_stop="41134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="40776" e_stop="41134" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40776" stop="41134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGATTTAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAATACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  S  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  D  L  K  S  R  S  S  S  S  *  M  Q  Q  G  H  S  *  D  Q  N  T  S  L  K  I  R  N  A  H  T  S  F  E  K  Q  S  L  A   </first_frame>
            <second_frame>  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  Y  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  I  *  N  P  V  H  Q  A  H  E  C  S  R  G  I  R  K  T  K  I  H  H  *  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  I  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  F  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  Y  I  T  K  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40901" stop="41098"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGFKIPFIKLMNAAGAFVRPKYITKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41294" PGL_stop="42671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41294" e_stop="42671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="41294" e_stop="42671" e_length="1378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="42055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="41954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41904" stop="42462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41908" stop="42671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41990" stop="42523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAACTACCATCCTTCTTCTTTACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAGCTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGTGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAACCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGACTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCTTCCATTGCCAAGATAACCAAATCCACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGACACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCGGAACACTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTAAATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTGGGAAGGATTTTGCCGTTGCTGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGTGAATCCACTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGG</gDNA_template>
            <first_frame> R  K  L  P  S  F  F  F  T  N  K  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  S  S  *  S  C  A  F  N  S  L  N  S  A  G  D  I  L  *  G  G  I  E  M  G  R  V  P  C  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  F  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  T  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  D  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  A  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  T  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  H  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  N  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  G  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  *  I  H  S  *  G  L  K  Q  S  *  V  A  Y  L  </first_frame>
            <second_frame>  E  N  Y  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  A  L  E  V  V  P  L  T  L  L  T  P  R  E  T  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  P  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  *  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  T  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  L  P  L  P  R  *  P  N  P  H  K  C  C  S  P  Q  S  L  P  H  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  T  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  F  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  S  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  F  V  V  K  T  E  L  V  G  L  S  N  F  R  N  T  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  *  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  L  L  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  T  L  E  D  *  N  R  V  E  W  H  I  W </second_frame>
            <third_frame>   K  T  T  I  L  L  L  Y  K  Q  N  Q  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  R  H  S  I  R  G  Y  R  N  G  A  S  T  V  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  N  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  F  H  C  Q  D  N  Q  I  H  I  S  V  A  P  H  K  V  Y  H  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  H  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  N  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  G  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  K  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  W  E  G  F  C  R  C  C  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  V  N  P  L  L  R  T  E  T  E  L  S  G  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42136" stop="42390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVNHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41432" stop="41677"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPCSRSIQKSISLSGGIPGRFAGNTSRNSRTTETDSTEGTWVVSSLRCAKKAKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41719" stop="41940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHRFSITIQDCKLRRKPSHTQNHIKIFHCQDNQIHISVAPHKVYHTRPIYLFNYHRLTHRSRNTNRHIKKFTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="44496" PGL_stop="43735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44496" e_stop="44239"/>
            <exon e_start="44084" e_stop="43735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="44496" e_stop="44239" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44238" i_stop="44085" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="44084" e_stop="43735" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44496" stop="44239"/>
              <exon start="44084" stop="43827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43971" stop="43735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAGTGATGATGCCTTGGTATAAAAGAAGGCTTGGTGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCATGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTATAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAAGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  V  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  *  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  :  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  R  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  S  D  D  A  L  V  *  K  K  A  W  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  H  D  R  I  W  I  G  C  H  V  L  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  Y  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  *  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  V  M  M  P  W  Y  K  R  R  L  G  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  M  I  E  Y  G  S  G  A  T  F  W  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y   : G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  I  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  K  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="90856" PGL_stop="100604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90856" e_stop="91018"/>
            <exon e_start="91260" e_stop="91422"/>
            <exon e_start="91652" e_stop="91943"/>
            <exon e_start="92141" e_stop="92241"/>
            <exon e_start="93422" e_stop="93608"/>
            <exon e_start="93709" e_stop="93818"/>
            <exon e_start="98735" e_stop="98825"/>
            <exon e_start="99337" e_stop="99502"/>
            <exon e_start="99842" e_stop="99960"/>
            <exon e_start="100117" e_stop="100604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="0.500" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.952"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90856" e_stop="91018" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.855">
            <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91260" e_stop="91422" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.801">
            <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="91652" e_stop="91943" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92141" e_stop="92241" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.500" acc_prob="0.971">
            <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93422" e_stop="93608" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="93709" e_stop="93818" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98735" e_stop="98825" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.965">
            <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511"/>
          </intron>
          <exon e_serial="8" e_score="0.952">
            <gDNA_exon_boundary e_start="99337" e_stop="99502" e_length="166"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99842" e_stop="99960" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="100117" e_stop="100604" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90856" stop="91018"/>
              <exon start="91260" stop="91422"/>
              <exon start="91652" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90859" stop="91018"/>
              <exon start="91260" stop="91422"/>
              <exon start="91652" stop="91928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90950" stop="91018"/>
              <exon start="91260" stop="91422"/>
              <exon start="91652" stop="91943"/>
              <exon start="92141" stop="92171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91293" stop="91422"/>
              <exon start="91652" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91314" stop="91422"/>
              <exon start="91652" stop="91893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91869" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92193" stop="92241"/>
              <exon start="93422" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93792" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99502"/>
              <exon start="99842" stop="99960"/>
              <exon start="100117" stop="100272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100238" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100315" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG : AATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG : AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG : AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG : GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG : GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCT : AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG : TATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT : GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTAC</gDNA_template>
            <first_frame> F  V  H  *  Y  R  A  M  D  Y  P  L  E  I  Q  I  S  T  K  I  F  I  H  I  F  C  G  V  I  S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  A  L  T  I  S  K   : E  Y  S  P  Y  R  I  L  T  N  S  W  G  L  R  H  K  H  Q  K  F  Y  S  Y  I  L  W  R  Y  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  W  L  D  N  Q  *  R :   I  *  S  V  Q  D  T  D  K  *  L  G  V  *  D  I  F  H  E  M  D  I  K  Q  Q  K  K  L  N  S  G  L  S  E  M  S  L  E  S  H  D  H  I  L  Q  R  C  P  S  S  E  I  V  A  D  S  N  C  N  L  E  Y  K  I  C  E  S  P  N  V  V  Q  P  K  A  V  I  D  Q  H  P  P  K  A  S  V  C  A  F  C  Y  S  A  K  T  T  E  :  K  T  G  P  F  L  Y  F  A  N  G  R  E  V  V  G  N  V  T  S  L  S  K  V  I  C  V  H  S  K  C  I  E  W :   T  P  Q  V  Y  Y  E  G  E  I  I  K  N  L  D  T  E  L  A  R  A  T  K  L  K  C  S  S  C  G  M  K  G  A  A  L  G  C  Y  M  T  S  C  R  R  S  Y  H  V  P  C  A  F  E  I  Q  D  C  Q  W  D  M  :  E  N  Y  V  M  L  C  P  V  H  K  S  V  K  F  P  S  E  K  S  K  S  I  E  H  I  K  R  E  M  H  P  K  A  S  P  L :   T  T  E  Q  L  T  F  W  A  R  S  S  D  G  P  K  E  W  V  L  C  G  S  A  L  S  S  E  D  K  :  Y  M  L  V  K  F  A  G  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  V  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  M  A  S  T  N  :  G  P  K  L  F  D  G  F  E  F  Y  F  I  G  D  F  M  P  D  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  V  I  H  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  E  T  Q  P  S  S  L  V  V  Y  N  C  D  L  S  Q  G  C  F  E  E  K  I  R  I  L  L  Q  R  L  A  E  A  E  D  L  A  E  Q  M  G  S  Q  T  V  Q  H  T  W  I  L  E  S  I  A  A  C  K  L  V  P  F  C  *  *  V  I  A  T  S  F  L  C  N  *  N  T  S  T  C  G  R  R  T  K  V  V  V  H  F  L  H  L  G  N  I  V  E  S  *  M  L  N  F  V  Y  K  C  E  R  D  I   </first_frame>
            <second_frame>  S  Y  T  S  I  G  Q  W  I  I  P  W  K  S  K  *  A  P  K  F  L  F  I  Y  S  V  A  L  S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  P  *  Q  S  V  K  :  N  I  V  R  T  G  Y  *  Q  I  V  G  V  *  D  I  S  T  K  N  F  I  H  I  F  C  G  V  I  S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  G  L  I  I  S  K   : E  Y  S  Q  Y  R  I  L  T  N  S  W  G  F  K  T  Y  F  M  K  W  I  L  S  S  K  R  N  *  T  L  V  C  Q  K  *  A  *  K  V  M  I  I  F  S  K  D  A  L  V  L  K  L  L  L  I  P  T  A  I  W  S  I  K  Y  V  N  L  L  M  L  F  S  Q  K  Q  L  *  I  N  I  L  R  K  Q  V  F  V  L  S  V  I  L  L  R  P  Q  R :   K  L  D  L  F  C  T  L  Q  M  E  G  K  L  W  V  M  L  L  L  F  P  K  S  Y  V  C  T  V  S  A  L  N   : G  H  L  K  Y  I  M  K  E  K  L  *  K  I  W  T  P  S  W  Q  E  L  Q  N  S  S  V  V  V  V  A  *  R  V  Q  H  L  A  A  T  *  R  L  A  G  G  V  I  M  C  P  V  H  L  K  S  R  I  A  N  G  I  W :   R  T  M  *  C  C  A  Q  S  I  N  L  L  N  F  Q  V  R  S  Q  S  L  *  N  I  S  R  G  K  C  I  Q  R  L  L  P   : *  P  P  S  N  *  L  F  G  Q  D  H  Q  M  D  Q  K  N  G  F  F  V  G  L  L  Y  P  Q  K  I  S :   I  C  W  *  N  L  L  V  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  W  P  Q  L  M :   G  Q  S  F  L  M  V  S  S  F  I  L  L  E  I  L  C  Q  I  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  T  V  R  S  S  W  *  N  R  I  M  L  H  R  K  L  S  H  L  L  *  S  Y  I  T  V  I  Y  R  K  V  A  L  K  K  K  S  E  F  C  C  K  D  *  Q  K  L  R  I  *  P  S  K  W  V  L  R  P  F  S  I  L  G  F  W  N  L  L  L  H  V  N  W  Y  L  S  A  D  E  *  S  Q  Q  V  F  C  A  T  E  I  L  P  L  V  A  E  E  Q  K  *  L  Y  I  F  C  T  W  E  I  *  L  N  L  K  C  *  I  L  C  I  N  V  K  E  I  L  </second_frame>
            <third_frame>   R  T  L  V  *  G  N  G  L  S  L  G  N  P  N  K  H  Q  N  F  Y  S  Y  I  L  W  R  Y  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  C  L  D  N  Q  *  R :   I  *  S  V  Q  D  T  D  K  *  L  G  F  K  T  *  A  P  K  I  L  F  I  Y  S  V  A  L  S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  A  *  *  S  V  K  :  N  I  V  S  T  G  Y  *  Q  I  V  G  G  L  R  H  I  S  *  N  G  Y  *  A  A  K  E  T  K  L  W  F  V  R  N  E  L  R  K  S  *  S  Y  S  P  K  M  P  *  F  *  N  C  C  *  F  Q  L  Q  F  G  V  *  N  M  *  I  S  *  C  C  S  A  K  S  S  Y  R  S  T  S  S  E  S  K  C  L  C  F  L  L  F  C  *  D  H  R   : E  N  W  T  F  F  V  L  C  K  W  K  G  S  C  G  *  C  Y  F  S  F  Q  S  H  M  C  A  Q  *  V  H  *  M  :  D  T  S  S  I  L  *  R  R  N  Y  K  K  F  G  H  R  V  G  K  S  Y  K  T  Q  V  *  *  L  W  H  E  G  C  S  T  W  L  L  H  D  V  L  Q  E  E  L  S  C  A  L  C  I  *  N  P  G  L  P  M  G  Y   : G  E  L  C  D  A  V  P  S  P  *  I  C  *  I  S  K  *  E  V  K  V  Y  R  T  Y  Q  E  G  N  A  S  K  G  F  S  P  :  N  H  R  A  I  D  F  L  G  K  I  I  R  W  T  K  R  M  G  S  L  W  V  C  S  I  L  R  R  *   : V  Y  V  G  E  I  C  W  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  R  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  D  G  L  N  *   : W  A  K  A  F  *  W  F  R  V  L  F  Y  W  R  F  Y  A  R  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  C  H  S  Q  *  G  A  V  G  E  T  E  S  C  C  T  G  N  S  A  I  F  S  S  R  I  *  L  *  S  I  A  R  L  L  *  R  K  N  Q  N  F  A  A  K  I  S  R  S  *  G  S  S  R  A  N  G  F  S  D  R  S  A  Y  L  D  S  G  I  Y  C  C  M  *  I  G  T  F  L  L  M  S  D  R  N  K  F  F  V  Q  L  K  Y  F  H  L  W  Q  K  N  K  S  S  C  T  F  S  A  P  G  K  Y  S  *  I  L  N  A  K  F  C  V  *  M  *  K  R  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="91943"/>
                    <exon start="92141" stop="92241"/>
                    <exon start="93422" stop="93608"/>
                    <exon start="93709" stop="93818"/>
                    <exon start="98735" stop="98825"/>
                    <exon start="99337" stop="99502"/>
                    <exon start="99842" stop="99960"/>
                    <exon start="100117" stop="100458"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFHEMDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQHPPKASVCAFCYSAKTTEKTGPFLYFANGREVVGNVTSLSKVICVHSKCIEWTPQVYYEGEIIKNLDTELARATKLKCSSCGMKGAALGCYMTSCRRSYHVPCAFEIQDCQWDMENYVMLCPVHKSVKFPSEKSKSIEHIKREMHPKASPLTTEQLTFWARSSDGPKEWVLCGSALSSEDKYMLVKFAGMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWIVTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLMASTNGPKLFDGFEFYFIGDFMPDYKSDLLDLVEKAGGTVIHSEEQLVKQNHAAQETQPSSLVVYNCDLSQGCFEEKIRILLQRLAEAEDLAEQMGSQTVQHTWILESIAACKLVPFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90961" stop="91018"/>
                    <exon start="91260" stop="91420"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQIIWKQEKTSLFALTISKEYSPYRILTNSWGLRHKHQKFYSYILWRYQFKIFIASNHLEARENLTFWLDNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90941" e_stop="91018"/>
            <exon e_start="91652" e_stop="91943"/>
            <exon e_start="92141" e_stop="92241"/>
            <exon e_start="93422" e_stop="93608"/>
            <exon e_start="93709" e_stop="93818"/>
            <exon e_start="98735" e_stop="98825"/>
            <exon e_start="99337" e_stop="99502"/>
            <exon e_start="99842" e_stop="99960"/>
            <exon e_start="100117" e_stop="100604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.801" e_score="0.987"/>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="0.986"/>
          <exon-intron don_prob="0.500" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.952"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="90941" e_stop="91018" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.801">
            <gDNA_intron_boundary i_start="91019" i_stop="91651" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="91652" e_stop="91943" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92141" e_stop="92241" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.500" acc_prob="0.971">
            <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93422" e_stop="93608" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="93709" e_stop="93818" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98735" e_stop="98825" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.965">
            <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511"/>
          </intron>
          <exon e_serial="7" e_score="0.952">
            <gDNA_exon_boundary e_start="99337" e_stop="99502" e_length="166"/>
          </exon>
          <intron i_serial="7" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99842" e_stop="99960" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="100117" e_stop="100604" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90941" stop="91018"/>
              <exon start="91652" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91869" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92193" stop="92241"/>
              <exon start="93422" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93474" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93792" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99502"/>
              <exon start="99842" stop="99960"/>
              <exon start="100117" stop="100272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100238" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100315" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG : AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG : AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG : GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG : GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCT : AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG : TATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT : GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTAC</gDNA_template>
            <first_frame> S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  P  *  Q  S  V  K  :  N  I  V  S  T  G  Y  *  Q  I  V  G  G  L  R  H  I  S  *  N  G  Y  *  A  A  K  E  T  K  L  W  F  V  R  N  E  L  R  K  S  *  S  Y  S  P  K  M  P  *  F  *  N  C  C  *  F  Q  L  Q  F  G  V  *  N  M  *  I  S  *  C  C  S  A  K  S  S  Y  R  S  T  S  S  E  S  K  C  L  C  F  L  L  F  C  *  D  H  R   : E  N  W  T  F  F  V  L  C  K  W  K  G  S  C  G  *  C  Y  F  S  F  Q  S  H  M  C  A  Q  *  V  H  *  M  :  D  T  S  S  I  L  *  R  R  N  Y  K  K  F  G  H  R  V  G  K  S  Y  K  T  Q  V  *  *  L  W  H  E  G  C  S  T  W  L  L  H  D  V  L  Q  E  E  L  S  C  A  L  C  I  *  N  P  G  L  P  M  G  Y   : G  E  L  C  D  A  V  P  S  P  *  I  C  *  I  S  K  *  E  V  K  V  Y  R  T  Y  Q  E  G  N  A  S  K  G  F  S  P  :  N  H  R  A  I  D  F  L  G  K  I  I  R  W  T  K  R  M  G  S  L  W  V  C  S  I  L  R  R  *   : V  Y  V  G  E  I  C  W  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  R  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  D  G  L  N  *   : W  A  K  A  F  *  W  F  R  V  L  F  Y  W  R  F  Y  A  R  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  C  H  S  Q  *  G  A  V  G  E  T  E  S  C  C  T  G  N  S  A  I  F  S  S  R  I  *  L  *  S  I  A  R  L  L  *  R  K  N  Q  N  F  A  A  K  I  S  R  S  *  G  S  S  R  A  N  G  F  S  D  R  S  A  Y  L  D  S  G  I  Y  C  C  M  *  I  G  T  F  L  L  M  S  D  R  N  K  F  F  V  Q  L  K  Y  F  H  L  W  Q  K  N  K  S  S  C  T  F  S  A  P  G  K  Y  S  *  I  L  N  A  K  F  C  V  *  M  *  K  R  Y  Y </first_frame>
            <second_frame>  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  C  L  D  N  Q  *  R :   I  *  S  V  Q  D  T  D  K  *  L  G  V  *  D  I  F  H  E  M  D  I  K  Q  Q  K  K  L  N  S  G  L  S  E  M  S  L  E  S  H  D  H  I  L  Q  R  C  P  S  S  E  I  V  A  D  S  N  C  N  L  E  Y  K  I  C  E  S  P  N  V  V  Q  P  K  A  V  I  D  Q  H  P  P  K  A  S  V  C  A  F  C  Y  S  A  K  T  T  E  :  K  T  G  P  F  L  Y  F  A  N  G  R  E  V  V  G  N  V  T  S  L  S  K  V  I  C  V  H  S  K  C  I  E  W :   T  P  Q  V  Y  Y  E  G  E  I  I  K  N  L  D  T  E  L  A  R  A  T  K  L  K  C  S  S  C  G  M  K  G  A  A  L  G  C  Y  M  T  S  C  R  R  S  Y  H  V  P  C  A  F  E  I  Q  D  C  Q  W  D  M  :  E  N  Y  V  M  L  C  P  V  H  K  S  V  K  F  P  S  E  K  S  K  S  I  E  H  I  K  R  E  M  H  P  K  A  S  P  L :   T  T  E  Q  L  T  F  W  A  R  S  S  D  G  P  K  E  W  V  L  C  G  S  A  L  S  S  E  D  K  :  Y  M  L  V  K  F  A  G  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  V  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  M  A  S  T  N  :  G  P  K  L  F  D  G  F  E  F  Y  F  I  G  D  F  M  P  D  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  V  I  H  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  E  T  Q  P  S  S  L  V  V  Y  N  C  D  L  S  Q  G  C  F  E  E  K  I  R  I  L  L  Q  R  L  A  E  A  E  D  L  A  E  Q  M  G  S  Q  T  V  Q  H  T  W  I  L  E  S  I  A  A  C  K  L  V  P  F  C  *  *  V  I  A  T  S  F  L  C  N  *  N  T  S  T  C  G  R  R  T  K  V  V  V  H  F  L  H  L  G  N  I  V  E  S  *  M  L  N  F  V  Y  K  C  E  R  D  I   </second_frame>
            <third_frame>   S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  A  L  T  I  S  K   : E  Y  S  Q  Y  R  I  L  T  N  S  W  G  F  K  T  Y  F  M  K  W  I  L  S  S  K  R  N  *  T  L  V  C  Q  K  *  A  *  K  V  M  I  I  F  S  K  D  A  L  V  L  K  L  L  L  I  P  T  A  I  W  S  I  K  Y  V  N  L  L  M  L  F  S  Q  K  Q  L  *  I  N  I  L  R  K  Q  V  F  V  L  S  V  I  L  L  R  P  Q  R :   K  L  D  L  F  C  T  L  Q  M  E  G  K  L  W  V  M  L  L  L  F  P  K  S  Y  V  C  T  V  S  A  L  N   : G  H  L  K  Y  I  M  K  E  K  L  *  K  I  W  T  P  S  W  Q  E  L  Q  N  S  S  V  V  V  V  A  *  R  V  Q  H  L  A  A  T  *  R  L  A  G  G  V  I  M  C  P  V  H  L  K  S  R  I  A  N  G  I  W :   R  T  M  *  C  C  A  Q  S  I  N  L  L  N  F  Q  V  R  S  Q  S  L  *  N  I  S  R  G  K  C  I  Q  R  L  L  P   : *  P  P  S  N  *  L  F  G  Q  D  H  Q  M  D  Q  K  N  G  F  F  V  G  L  L  Y  P  Q  K  I  S :   I  C  W  *  N  L  L  V  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  W  P  Q  L  M :   G  Q  S  F  L  M  V  S  S  F  I  L  L  E  I  L  C  Q  I  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  T  V  R  S  S  W  *  N  R  I  M  L  H  R  K  L  S  H  L  L  *  S  Y  I  T  V  I  Y  R  K  V  A  L  K  K  K  S  E  F  C  C  K  D  *  Q  K  L  R  I  *  P  S  K  W  V  L  R  P  F  S  I  L  G  F  W  N  L  L  L  H  V  N  W  Y  L  S  A  D  E  *  S  Q  Q  V  F  C  A  T  E  I  L  P  L  V  A  E  E  Q  K  *  L  Y  I  F  C  T  W  E  I  *  L  N  L  K  C  *  I  L  C  I  N  V  K  E  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="91943"/>
                    <exon start="92141" stop="92241"/>
                    <exon start="93422" stop="93608"/>
                    <exon start="93709" stop="93818"/>
                    <exon start="98735" stop="98825"/>
                    <exon start="99337" stop="99502"/>
                    <exon start="99842" stop="99960"/>
                    <exon start="100117" stop="100458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFHEMDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQHPPKASVCAFCYSAKTTEKTGPFLYFANGREVVGNVTSLSKVICVHSKCIEWTPQVYYEGEIIKNLDTELARATKLKCSSCGMKGAALGCYMTSCRRSYHVPCAFEIQDCQWDMENYVMLCPVHKSVKFPSEKSKSIEHIKREMHPKASPLTTEQLTFWARSSDGPKEWVLCGSALSSEDKYMLVKFAGMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWIVTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLMASTNGPKLFDGFEFYFIGDFMPDYKSDLLDLVEKAGGTVIHSEEQLVKQNHAAQETQPSSLVVYNCDLSQGCFEEKIRILLQRLAEAEDLAEQMGSQTVQHTWILESIAACKLVPFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99098" e_stop="99502"/>
            <exon e_start="99842" e_stop="99960"/>
            <exon e_start="100117" e_stop="100604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.941"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="99098" e_stop="99502" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99842" e_stop="99960" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="100117" e_stop="100604" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99098" stop="99502"/>
              <exon start="99842" stop="99960"/>
              <exon start="100117" stop="100509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99864" stop="99960"/>
              <exon start="100117" stop="100498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100238" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100315" stop="100603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT : GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTAC</gDNA_template>
            <first_frame> I  I  D  A  C  P  G  N  S  N  V  *  K  I  H  L  F  *  Y  L  H  I  Y  L  L  L  L  L  W  Y  L  Y  F  S  L  F  *  C  P  F  I  L  R  K  P  L  K  *  N  K  L  *  L  L  F  V  W  N  C  *  P  K  M  V  H  F  R  L  Y  *  S  I  I  G  F  L  T  F  C  S  I  C  W  *  N  L  L  V  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  W  P  Q  L  M :   G  Q  S  F  L  M  V  S  S  F  I  L  L  E  I  L  C  Q  I  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  T  V  R  S  S  W  *  N  R  I  M  L  H  R  K  L  S  H  L  L  *  S  Y  I  T  V  I  Y  R  K  V  A  L  K  K  K  S  E  F  C  C  K  D  *  Q  K  L  R  I  *  P  S  K  W  V  L  R  P  F  S  I  L  G  F  W  N  L  L  L  H  V  N  W  Y  L  S  A  D  E  *  S  Q  Q  V  F  C  A  T  E  I  L  P  L  V  A  E  E  Q  K  *  L  Y  I  F  C  T  W  E  I  *  L  N  L  K  C  *  I  L  C  I  N  V  K  E  I  L  </first_frame>
            <second_frame>  S  L  M  H  V  L  G  I  A  M  Y  E  R  S  T  Y  F  S  I  F  T  F  I  C  F  Y  F  Y  G  I  C  T  L  A  Y  F  N  A  L  L  F  *  E  S  L  *  S  K  T  N  C  N  F  F  L  F  G  I  V  S  R  K  W  C  I  S  D  F  I  N  P  L  L  V  F  *  H  F  A  V  Y  V  G  E  I  C  W  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  R  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  D  G  L  N  *   : W  A  K  A  F  *  W  F  R  V  L  F  Y  W  R  F  Y  A  R  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  C  H  S  Q  *  G  A  V  G  E  T  E  S  C  C  T  G  N  S  A  I  F  S  S  R  I  *  L  *  S  I  A  R  L  L  *  R  K  N  Q  N  F  A  A  K  I  S  R  S  *  G  S  S  R  A  N  G  F  S  D  R  S  A  Y  L  D  S  G  I  Y  C  C  M  *  I  G  T  F  L  L  M  S  D  R  N  K  F  F  V  Q  L  K  Y  F  H  L  W  Q  K  N  K  S  S  C  T  F  S  A  P  G  K  Y  S  *  I  L  N  A  K  F  C  V  *  M  *  K  R  Y  Y </second_frame>
            <third_frame>   H  *  C  M  S  W  E  *  Q  C  M  K  D  P  L  I  L  V  S  S  H  L  F  A  F  T  F  M  V  F  V  L  *  P  I  L  M  P  F  Y  F  E  K  A  F  E  V  K  Q  I  V  T  S  F  C  L  E  L  L  A  E  N  G  A  F  Q  T  L  L  I  H  Y  W  F  F  D  I  L  Q  Y  M  L  V  K  F  A  G  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  V  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  M  A  S  T  N  :  G  P  K  L  F  D  G  F  E  F  Y  F  I  G  D  F  M  P  D  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  V  I  H  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  E  T  Q  P  S  S  L  V  V  Y  N  C  D  L  S  Q  G  C  F  E  E  K  I  R  I  L  L  Q  R  L  A  E  A  E  D  L  A  E  Q  M  G  S  Q  T  V  Q  H  T  W  I  L  E  S  I  A  A  C  K  L  V  P  F  C  *  *  V  I  A  T  S  F  L  C  N  *  N  T  S  T  C  G  R  R  T  K  V  V  V  H  F  L  H  L  G  N  I  V  E  S  *  M  L  N  F  V  Y  K  C  E  R  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99199" stop="99502"/>
                    <exon start="99842" stop="99960"/>
                    <exon start="100117" stop="100458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILMPFYFEKAFEVKQIVTSFCLELLAENGAFQTLLIHYWFFDILQYMLVKFAGMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWIVTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLMASTNGPKLFDGFEFYFIGDFMPDYKSDLLDLVEKAGGTVIHSEEQLVKQNHAAQETQPSSLVVYNCDLSQGCFEEKIRILLQRLAEAEDLAEQMGSQTVQHTWILESIAACKLVPFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="91388" e_stop="92172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="91388" e_stop="92172" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91388" stop="92172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91389" stop="91859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGG</gDNA_template>
            <first_frame> E  N  L  T  F  W  L  D  N  Q  *  R  *  E  T  I  V  F  S  N  K  E  G  V  *  *  D  E  S  R  G  T  A  V  S  C  L  L  T  N  D  F  V  I  L  G  L  *  *  V  L  I  G  L  L  D  *  K  N  G  T  C  K  S  F  C  *  Y  S  L  L  Y  E  F  F  F  L  K  L  Y  T  N  L  I  L  S  F  Q  N  I  V  S  T  G  Y  *  Q  I  V  G  G  L  R  H  I  S  *  N  G  Y  *  A  A  K  E  T  K  L  W  F  V  R  N  E  L  R  K  S  *  S  Y  S  P  K  M  P  *  F  *  N  C  C  *  F  Q  L  Q  F  G  V  *  N  M  *  I  S  *  C  C  S  A  K  S  S  Y  R  S  T  S  S  E  S  K  C  L  C  F  L  L  F  C  *  D  H  R  G  E  L  S  V  Q  E  K  L  Q  A  I  S  C  L  A  L  Y  F  S  *  Y  S  L  H  C  Y  H  L  E  S  Y  L  I  I  L  W  S  T  P  L  F  I  C  T  Y  S  A  I  C  S  P  F  L  I  L  T  F  S  F  F  V  K  Y  L  Q  K  T  G  P  F  L  Y  F  A  N   </first_frame>
            <second_frame>  K  T  S  L  F  G  L  I  I  S  K  G  K  K  P  S  F  F  Q  T  K  K  E  F  S  R  T  N  Q  G  E  Q  Q  F  H  A  C  *  L  M  I  L  *  F  L  G  Y  N  K  F  *  L  V  C  *  I  K  K  M  E  H  A  K  V  F  V  S  I  L  S  Y  M  N  F  F  F  *  S  F  T  Q  I  *  S  S  L  S  R  I  *  S  V  Q  D  T  D  K  *  L  G  V  *  D  I  F  H  E  M  D  I  K  Q  Q  K  K  L  N  S  G  L  S  E  M  S  L  E  S  H  D  H  I  L  Q  R  C  P  S  S  E  I  V  A  D  S  N  C  N  L  E  Y  K  I  C  E  S  P  N  V  V  Q  P  K  A  V  I  D  Q  H  P  P  K  A  S  V  C  A  F  C  Y  S  A  K  T  T  E  V  S  Y  Q  Y  R  R  N  F  K  L  S  A  V  L  L  Y  T  F  L  N  T  H  S  T  A  I  I  W  K  V  I  *  L  F  C  G  P  L  L  C  L  S  A  H  I  L  L  Y  V  A  H  S  *  Y  *  L  F  H  F  L  S  N  I  C  R  K  L  D  L  F  C  T  L  Q  M  </second_frame>
            <third_frame>   K  P  H  F  L  A  *  *  S  V  K  V  R  N  H  R  F  F  K  Q  R  R  S  L  V  G  R  I  K  G  N  S  S  F  M  L  A  N  *  *  F  C  D  S  W  V  I  I  S  F  N  W  F  V  R  L  K  K  W  N  M  Q  K  F  L  L  V  F  S  P  I  *  I  F  F  F  E  A  L  H  K  F  D  P  L  F  P  E  Y  S  Q  Y  R  I  L  T  N  S  W  G  F  K  T  Y  F  M  K  W  I  L  S  S  K  R  N  *  T  L  V  C  Q  K  *  A  *  K  V  M  I  I  F  S  K  D  A  L  V  L  K  L  L  L  I  P  T  A  I  W  S  I  K  Y  V  N  L  L  M  L  F  S  Q  K  Q  L  *  I  N  I  L  R  K  Q  V  F  V  L  S  V  I  L  L  R  P  Q  R  *  V  I  S  T  G  E  T  S  S  Y  Q  L  S  C  F  I  L  F  L  I  L  T  P  L  L  S  F  G  K  L  S  N  Y  F  V  V  H  S  F  V  Y  L  H  I  F  C  Y  M  *  P  I  L  D  T  N  F  F  I  F  C  Q  I  F  A  E  N  W  T  F  F  V  L  C  K  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="92042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFHEMDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQHPPKASVCAFCYSAKTTEVSYQYRRNFKLSAVLLYTFLNTHSTAIIWKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101591" PGL_stop="101300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101591" e_stop="101300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="101591" e_stop="101300" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101591" stop="101300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101590" stop="101416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAAGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTCGGTGTTGGCAAGGTAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGAGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  R  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  R  N  C  *  N  K  T  K  C  G  R  Q  L  K  Y  S  K  S  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  K  T  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  F  G  V  G  K  V  A  *  T  C  M  A  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  R  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  R  L  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  S  V  L  A  R  *  L  E  R  A  W  L  T  C  G  L  R  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  L  K  *  N  *  V  W  K  T  A  K  I  F  *  E  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 263 chains have been computed
$ 
$ memory statistics:
$ 281472 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 6397 bytes was the average size of a spliced alignment
$ 18664 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1696 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 309 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:06:08
-->
