<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:37:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585730" ref_strand="+" ref_description="SGN-U585730 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157352550|emb|CAO43656.1| (e_value=1e-79) unnamed; (*ATH) AT1G22700.2 (e_value=4e-79) | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; ESTs gb:T43026, gb:R64902, gb:Z18169 and gb:N37374 come from this gene | chr1:8028181-8029956 REVERSE | Aliases: None; (*SWP) sp|O78458|YCF37_GUITH (e_value=4e-18) Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37; ">
      <seq>ggctctactcctgatagagttggttgagataaactttattatcctcaagaagcaaaaaacagaagaaaattttaccaagaatgattcatcttatgcccctaaaaattcaatcttgatgcttcccagtttactcttcagtaatttgaatcataaaaatataccctttttgtagatagaagaaaagaaatgctaatgatacagtccaccatttcacttcctctgcaaaaatctgttcttgttccagctaaaattgcaacaagtgggagtaaaaatggttgttttcttgatttaaatggtcggtgtggttcaaaatcagcttcttatcactttccaagaagacccattaagggaaattcaattcagctgaagatttatgccaggaaatcagaatcactcccaattttgctttcagagaaagttgatgaattgccagagatgttgctgaatggcggagatattaccattagtagtggggagattctttctctatcagctttctcatgtggatctatcttctggttgacatctgggcaagtggcattagcaagtgaaggtgtcagagtaaatatggtttatgaggtcggggaattatttgaactgggaatccagcttacttacctgcttttactactagcattgcttggggttggaagtttctttgtgattcggcaagtccttgtccgcagagagcttgatctttctgccaaagaattgcaagagcaagttagaagtggtgatgccagtgccacagagctttttgaacttggagctgtgatgttgaggagaaaattctacccagctgcaaccaaataccttcttcaggcagtagaaaagtgggatggagatgatcaggatcttgcccaagtttacaatgcccttggtgtcagttatgtacttgatgggaaaattgacaaaggaattgctcagtttgaaaatgctgtaaaagttcaacctggttatgtcacggcatggaacaaccttggcgatgcatatgagaaaaccaaagacttaacatctgctctaaatgcatttgaagaggtacttctttttgatcctaacaacaaaatagctcgtcctaggcgcgatgcattgaaggacaaagtaacaatgtataaaggagtatcagtgaaatctaagaagagttgatatagctagcccattagttcttttacacacttgtgctgattatctttttgaggagctctttttgttctctttttccgctttctcctacacaagtggaattcgttgtcatggccatgttgaagttttggatgttccataatagaagttgtttgaactttctgttttaagggaaatgaaatgaacagtgtctattctcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="-" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="13836" stop="9117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13537" g_stop="13175" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13174" i_stop="13007" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12946" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="424" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12945" i_stop="11696" i_length="1250">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11695" g_stop="11403" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="717" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11402" i_stop="11005" i_length="398">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11004" g_stop="10858" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="864" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10857" i_stop="9901" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9900" g_stop="9404" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="1359" r_length="495" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="-" ref_id="SGN-U585730" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1361</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13537" e_stop="13175"/>
          <exon e_start="13006" e_stop="12946"/>
          <exon e_start="11695" e_stop="11403"/>
          <exon e_start="11004" e_stop="10858"/>
          <exon e_start="9900" e_stop="9404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCACTCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTTCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAGGTAATTCCCCTAATTTTTGGGTTGCTGTGTTTTCTTGATATGCTTGTAGATGATTATTTGAGTGACTGCTGTCGATTACTCTGTTGTTGAGAGCTCTTTAGTGATGCGTTTGTTGATTTGTTTTATCTCTTTTTGGGTATTCTTAAGTTTTGTCTATATTGTTTACAGCTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATGGTACTTCTTTTTCTTCTTTAATGATTAACTTTGAAAAATAACTCTAATTGATGCTACATGGGCAAAATTTTCCTGATGGCGGTCAGTCCTGAACGAATTCCCTCTCGTAGCTAGGGCCTTGCTAGTCCTTGTAAAACAAAAATAGGGCAGCCTGGTGCACTAAGCTCCCATGATGCGTGGGGTGTGGGGAAGGGATGGACCACAAGGGTCTATTGTCCTTCATATCTATAAGAGACTATTTTCACAGGTCGAAATCCGTGACCTTGTTGTTACATAGAAGCAACTTTACTAGTTCTCTCTATCCGTAATCCATATTATAAAATTATCTAATGTAACCTTTACAGGTTTCAAGGATTAATTCATTTAACTAGACAATTTTTATCTTTGATGGGATGTTTTCTTTATTTAACTAGACAACTGGTATTTTACTTATTGATATCATCAACTAGTAGTGTTTTCTTCTCTTATTGATTCTATAATACTCAAGTCAAACTAAAATCTTCATGTCTAGTGAAAATATGACACATTGGGTAGGATGGATCATCTTATTTGAAGTGCTAGTTCTAGATCCCTGCATTGGTATAGTCGAGACTGAGAAATGTCGATTTTCGTACACATACTTTTTTTTTTCTTTAATTGGAATGTTTATATATTGTTTTTAGTTTTGTGGCAGTCTATCAAATGTTTGGAAACAATTATCATTTTCCTATAGATTTACCAAAAAGAAAAAAAAATATCATCTTCCCTTAGAAAGGTATGAAGACCTACTTAACTCCTAGCTTGAGAAAGATCAAGAGATATTTGAGATTGGTAGGAGGGATGATTTAGCTTCTAATTATACTTATGATTACATTTTTAACTCCACTAATGCTTTTCGATTGATCTGTTGGTTTTTGATAAAAAAAACACTGAAAAAGCACCCTCATCCTCGGAATGGAAAGCAAACTGAAATTTCAATCAACTTCTTATGACCTGTGACACAAATCCTTACCTCGGACTTGTAAATATATTCACGACTGTGTATAATGTTGAGATTAATTTCCAAAAGGACATCACCTTGTTCTTCTATGAACAAGTAATAAATCATTCCAACAGAAGTTTGGAACTTCTTGTTTTGTATTAAATCCTCTATACGCATACAGAGGAAGATTGCCTAATATAATTGCTATGAACCATAAATATGATAATAATGCTTTGTTGCACAGATTTTGCATGAACTAAAAGGTCCCGTCATTGGCTTCCCATTGCAGAATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAAGTATGTGACTAAATGTCTTTTCTCGTTGTGTATAAATGCTTTGCCATTTATTTGAAACATATATAGTATGCATCTGTATGGTTTAGATCTACAAATGCAAACTTCTTTTGAAGATATATATATATATCATTGTATTCTCCTGAAGGTAGAGCAGGAGAAGAATGCTTTATAAAGAGAAAAAAAGAAAGAAGATTGTGTTTAAATCTTGACTTGGAGATATCAATATGAATTATTCTATTTGTTTCCCTCAGACAACAATAGCTGACTTTTAATCTATAATTCCATATCACATTTGTACACGTTTATATCAGTTGCAAGAACAACTTGCGCATAGATGCGAGAATGCAACTCTCATTCTCTACCTCTGAACACACTGTTTTATTTGTCACACAACACAGGAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAAGTATGAACTACTCTTCAACAATTTCTGTTCCATTTATCATTTATAATTTTATATAAATGATAAAGGACCTTCTCTATAGCAATTCTCATTTTATATATAAATTTTTGATACAAATGAATGCACATTTATCCAGATGAACATGTGAAGAATCTCTTTTACCCTGGATCAAACTTTTACTTACTGCCAAAAAAAAAAAAAAGTTCAAAAGTCTGCTAGAAACTGCTGAAATTCCCAGCTCACAAATTATTTCTCTATCAAAATCTAGAAAATTTGTATAGAAAATGGACCTCAAAAGCTAGTTCATGAAGTGAAGGTTGTTCAAGATCATATAAGTAGACAATAACCCATGGTTGTGTATTTGGAGCATCGACATAACGTGGGATCCCAACATTGGGCCTGCATCACTGGGCCAAAAGGACAAAATAATCTTCTTCTTTTTGTTATGAAGATGTTGTATTAGAAGGACAGAATAACTCCTGGATAACTCCTGAGGAAATCAGGATTTTTCCTTAGAAGAAATGAGGTTGACTGGTTGTGGTAGAAATAAGCTTGATGTTCCAGTCTTATTCTTTTTATTTTTTGGTTGATGGAGCCATGAAGATTAGGGGACTGGTCATGTTGTCCAGGATTCCGTAATATGCATCACGGAACTCCAAATACTTCGGAGCTGATTGAACATCTAACTAGGAAGCTTGTATCATGGCATGGTCTGAGAATGTTAAGCAAATCTCTGTTAAATGAAATTTAACCAATACAGAAAACTATGACTTCAAAAGGATGTATTTCTAAAGAATCGTTTTAGACAGTTATAGAATTTTTACTCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCAGCCAATACTTTTTTTGCTGTTGCGTACCAACTCTTTTCAGGTATCTGAGTTATGTATTCTGCTCCCTTCCCTTAAAATTTTGTGCATCTTTACAGGTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTTGGTGTAAATGAAATGAACAGTGTCTATTCTACTTTATTTGCATAGAATC</genome_strand>
        <mrna_strand>GGCTCTACTCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTGCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAG........................................................................................................................................................................CTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTAAG-GGAAATGAAATGAACAGTGTCTATTCT-CTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596084" ref_strand="+" ref_description="SGN-U596084 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352550|emb|CAO43656.1| (e_value=6e-14) unnamed; (*ATH) AT1G22700.2 (e_value=1e-15) | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; ESTs gb:T43026, gb:R64902, gb:Z18169 and gb:N37374 come from this gene | chr1:8028181-8029956 REVERSE | Aliases: None; ">
      <seq>aaacagaaagctcaaacaacttctattatggaacatccaaaacttcaacatggccatgacaacgaattccacttgtgtaggagaaagcggaaaaagagaacaaaaagagctcctcaaaaagataatcagcacaagtgtgtaaaagaactaatgggctagctatatcaactcttcttagatttcactgatactcgtttatacattgttactttgtccttcaatgcatcgcgcctaggacgagctattttgttgttaggatcaaaaagaagtacctcttcaaatgcatttagagcagatgctaaggctttggtttactcatatgcatcaccatggttgtagcatgccgggacttaaccaggttgaacttcttacagcattgacaaactgagcaattactttgtcaaatgtcccatcaagtacataactgacaccaagggcattggaaacttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="+" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="9155" stop="10203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9455" g_stop="9907" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="+" ref_id="SGN-U596084" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9455" e_stop="9907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAAAGTTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCCTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGTTAAGTCTTTGGTTTTCTCATATGCATCGCCAAGGTTGTTCCATGCCGTGACATAACCAGGTTGAACTT-TTACAGCATTTTCAAACTGAGCAATTCCTTTGTCAATTTTCCCATCAAGTACATAACTGACACCAAGGGCATTGTAAACCTGTAAA</genome_strand>
        <mrna_strand>AAACAGAAAGCTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCGTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGCTAAGGCTTTGGTTTACTCATATGCATCACCATGGTTGTAGCATGCCGGGACTTAACCAGGTTGAACTTCTTACAGCATTGACAAACTGAGCAATTACTTTGTCAAATGTCCCATCAAGTACATAACTGACACCAAGGGCATTGGAAACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575988" ref_strand="+" ref_description="SGN-U575988 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157352554|emb|CAO43660.1| (e_value=3e-59) unnamed; ">
      <seq>ggtggtccttttacaccttaaaacactatgtggcacagtacaattgtgatccgagatctgatttgagcctgaggtgcatactgggcgacgaggttgatggtgttcctggaatccagcatgttgttcctggttttggtcgaaagactgctttgaagcttttgaaaaagcacggtacactggagaatttacttaatgctgcttcagtaagatcagtgggcaggcagtatgcacaagatgcccttatcaagtacgctgattatctgcgcagaaattatgaagttctctctctgaagagggatgtcagtatccatattgaggagcaatggcttaatgagagggatgcgcgtaatgactcacttgttttatccaacttcgtcacttcgctggaagacagtaggaatcttaatttggaaaagagatcgcattccattggttgaaattgccagaagaaagcattttttgtgtaagttataatgtaagctctacaacctgaagaacaaagatcttgatgcttcagcagaagtatcaaactaaaccaatagacgattaccgaacttagccagaagatttgatcagatgaaccggactgaatcagaatatccaaattcacaatagaagcatacagtagaaaacttagctattattcctcttggacgaatcactaaggaagagacttctgaggtctaaaatgtacagtaagtttgagtttcttgtagtactgcctctagaatagattcgcgggactattgtatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="-" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="30080" stop="26574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29780" g_stop="29709" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29708" i_stop="28469" i_length="1240">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28468" g_stop="28246" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="295" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28245" i_stop="28133" i_length="113">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28132" g_stop="27968" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="460" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27967" i_stop="27246" i_length="722">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27245" g_stop="27095" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="611" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27094" i_stop="27019" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27018" g_stop="26874" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="756" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="-" ref_id="SGN-U575988" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29780" e_stop="29709"/>
          <exon e_start="28468" e_stop="28246"/>
          <exon e_start="28132" e_stop="27968"/>
          <exon e_start="27245" e_stop="27095"/>
          <exon e_start="27018" e_stop="26874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGAGTAAGTATGTCACACTCCTTTTAGGTGTGGTTTTATCTTAACTTAAGTTACTGGTTCATGTACTTATTGAAGCTAATAATATCTTATTCATAGCTGGAAGTTGAAAGTCGTTATTTTACTTCCTTGTAAGGCAGGGTTTGGGTGAGATTTAGAGAACTGTAGTTTTAAGAGATTCCCGTTTATATTAAAAGGTATATTATGGAGTAGTGAAATGAAGTGGTCCTGAATAGAGCACACCAAATATAGAGGATTCATATAACCAACCCCTGCTAGTTTGTGACTGACGTTTCACTGATTGGGATATGAACACTAAGAGAGGCGTAGTTAGGGAGTGGTTCTTTCCCGGAAGAGGGGTAAAATTGAAGGACGGTGTGGGAATTTAATCTTGGATAAGATATCTTTTTCTTCTAATTTTTACTACATCTTACTAAATATTTTTTCATACCAAATATTTTTAAAAGTTCTTCCATTGATATGAACATACCTTCAATACATCTGTAACTCTTTATTCTTCTCTTTTATCGTACCGGATTCGGTCAACCATTTTTGGGTACTTTGACCAAAATTGACAGAGAAATTCAGGACAACTACGATGATTTCTGTAATCAAAACAAAAGCTAACGTGAAATTGAAAAAAATGAAGTACCCTGTATACATAAATTTCTATGTCAGTCTTTTCCTTATACCACCTTCTGTAAATCTACTCTTGATCAATATTCTCTCCTCAGAATACCCTTTTAATTTACCTCATAATGTTCTCATAATTTAGACATGCAACTCCATTCTTAGACATTTGAATTATTTTTAGCCGAATCCCCGCACCCCTATCGGTACCCTTGAATCTTAAAATGTAGATCATGAAGGATCTGACCTCTAAATCTGCACCTGTATTTGACACCCGCACCCAAGTCCGAGCACCTTAGGTCAAGAACATCATGAAGACTACCTTTGCATTGTGAAGAAAGTGCAGGCGGCACTTGGTAAAATGAAGAACAAAAGCCTCTTTTGTTGCCATATAGCTTCATGTGTTTCATTTTATCCTGTTCTTCTTATAAGGCTTTAGCATTTTTCCATGTCTGCACTTCTGGGCTTTAGCAATATAGGCTAGCTACCGTAGGGGATGAGTGGATTTTTGATGCTTCAGTGTCGATGCTGTTAGAATTATCTAATCACCAGTTTTGTTCTCGAGTGTCTGCTGTTATTATGTTGGCTGCTAACTTTTTGTGGTTTTCTGGATAAGGGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAGGTAGCATTTTCATTTTTTCTTTCTTCTCTGTAACAGCAAAAGAGTTATTCAGTATCCAAGCCCCTTTCATAGCTTCCTACTTCTAACTATTGTAAATGGAATGACACTAAAAGGGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTTGTGAGTTTCTTCTTTACTTCTTTATTTGTTCCATTTTTATTCTTCAGCTTTGACGGAGTGGCATATTAAGTATCTTCTGGATAGCAAAGACGGTAAAATGTCAAAAGGTATAGTGAAAGGTCTTTTAGCTTGTCTACATTTTACGGTGACCATATATCTAGCCTATCTTACCAAAAGAAGACATTACCTCTAGCCCATATTTCAATATATCACACATCAATCCAGAGTTGATTTTGCTTTGGGTTGAAATGACAATATGAGCAACAAAAGATTCTGCTCCAGACCCTTTTTTTTTTGAAGTGGCTAGTGTTTTTGATGTTAAAATCAGAGCACTAAGGAGGTGCTGTAGCTACATACAAAAAGATTACAAGTGAATATTAAAAAAGTTAACAGGATGTCTCGAGTATCATTCTAATCTAACACCAACAAGTTATCAACATAATACAATCTTGTTTCCAGCTTTAGGTATGTTTTTCTACAAATTTAGTATTTATGTTATAATTTCTTTTACATTCTGAATGATGTCGGAGAGCTTGTATGATGTTGAGTGAATTAAAATAAATTAACTAGAAAGGCCTAATTACAGTTACCACATTGAAAAGATGATTTTGTCATGAAGAAGAAAACAATGTAAAAACATGGACACCCTGCAAAGGAACAGAAAATGATATGAATTTCATGTTATTCAAATTCTCAAGTGCTTGATGTTCTGTTTTATGCAGTGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACAGTGAGTATAGACTAATACTCTCTATTTCATGTCTATTTGTTTCAATAACACTAATTCATTTTTCTTCATGTATCAGATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTTTAGTAGTGCCTCTAGAATAGATTCGTGGTACTATTGTATGCTC</genome_strand>
        <mrna_strand>GGTGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAG.................................................................................................................GGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACA............................................................................ATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTGTAGTACTGCCTCTAGAATAGATTCGCGGGACTATTGTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585231" ref_strand="+" ref_description="SGN-U585231 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|5732018|gb|AAD48923.1|L47356_1 (e_value=1e-126) chorimate; (*ATH) AT5G10870.1 (e_value=2e-66) | Symbol: None | chorismate mutase, cytosolic (CM2), identical to gi:5732016 | chr5:3430547-3432463 REVERSE | Aliases: None; (*SWP) sp|P42738|CHMU_ARATH (e_value=9e-54) Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1; ">
      <seq>attctttctctcatttttttccatcctctccccacaaaaaatctttttcacaattttgtcaatcaaaaaaaaaaaaaaagaaaagaaaaaaatggcttgtggtgatgatgataaattgtgtcttgattcaataagaaagagtttaattagacaagaagataccattattttcaaccttattgaaagaatcaaattcccaataaatccaactttatacaaacaacaattacctccttcttccaatttttcaggatccttatttcaatacttgtttcaagaaacagaatcccttcaatccaaggttggtagatatttggccccagaggaaaatcctttcttcccagataatttgtctgactcaatcataccacttaccaaatgcacaccagttttgcatcctgcagcagaatcagtaaatgtaaatgagaaaatattggatatttatataaatcagatgcttccactattttgtactgaggttaatgatgatgcaaactttgcaactactgctgcttgtgacattcagctcttgcaggcactatctagaaggattcactatggaaaatttgttgctgaagttaaatttagagatagtattgatgaatataaaccatttattcttgctcaggatagagatgctttaatgaagttattaacatttgaagcggttgaagagatggtgaagaagagagtagcgaagaaagctaaagtgtttggtcaagaagtgagcttaaacgataacgctgaagaagtgaagggcaaaattgatccattgttagtttcacgtttatatgatgaatgggttatgcctttgactaaacttgtcgaagttgaatacctcctgcgtcgtcttgattaattgagcttattattattattgtaatgattttcgtcaccattattatcatttgttattgttatcgatcgacatttatgcagatgaaaatgacgattcatgacatttgtgaattgccaaaaagttgagctaattgtcattctttagttatggatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="-" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="36158" stop="32062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35858" g_stop="35559" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35558" i_stop="33836" i_length="1723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33835" g_stop="33749" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33748" i_stop="33619" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33618" g_stop="33472" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="535" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33471" i_stop="32932" i_length="540">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32931" g_stop="32839" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="628" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32838" i_stop="32749" i_length="90">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32748" g_stop="32362" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="1015" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="-" ref_id="SGN-U585231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1014</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35858" e_stop="35559"/>
          <exon e_start="33835" e_stop="33749"/>
          <exon e_start="33618" e_stop="33472"/>
          <exon e_start="32931" e_stop="32839"/>
          <exon e_start="32748" e_stop="32362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTCTCTCATTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAAA-AAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAGGTAACAATTTCTCTTCTTCTGTTTGTTTTTCAAAGCCATAATCAGAATTTTTAAAGTGCTAATAATTAAGTTTTAGATTTGATATGCATATAAAATTTAATAAATGAACATAAAAATATTCTAAAAGTTATTAAATTCGATCGAACTGGTATTTGTTGTTAAAAGTTATTAAATTCGATCGTACTGATATTTGTTGTTAGGAGATGTTAATGGTGTTTGTCTTTTATATTCTTACTCTTTTGGTAGGTTTTCCTTATTTTTGGGAACTTAATATATTCCCTTGTTTACTTGTTTGCTATTTTAAATTTGGGTTGACCATGACTTATTTATATTTTATCTATTTTTTCACTACATAGTGGATGATTCTATAATGACACTTAGGTCTCATTTGTTTACATTTAAAAAGAGTTTGAATTTTAATTATTTAGATTGGTCCTTATATTTTAAAATTAAATTTTAATTATTTATATTTATTTTATTAAGTTTGTTTGTTTTGTTTTTTATAGTCTCTTAATGAATAAGATCTATAACATACTCTTAATATCACTGATATTCAAAAATAAAACTCATATATTAATTCAACTATATGAGTACAATTCATAAAAGTTGTTTTCTTACTTAATTAATGTTAATTACATGCTTACCGTTATAATTTTTTTTATTCTTATTAACTTAATATATGTTTTACTTTCATACATTAATCAATATATTTGAATTTCTATGCAATATAATATTTAGCACAATGCTAGAAAATAAGAAAGTATTAATTATTTAATCGATAGCAATAACAAATGTCTATTATAAAGTAAAATGTTTTCATAAATATTATATTATTATTATTCTATGTAAACTATTTTACATTGTATTATATTAGATTCTAATAGTTTTTGAGTGGAAATAATACTCATGTTGATGATGTAACTTAATGTTAAATTCTTAAAAGATAAATCATATTACCTTGTTACGATAAAAATGTTCAAAATATTATTTTTTATATAAAAAAAACTATTTTACTAAAATGAGATTTTTATAATATTTTATTGATATAACATTTAATTTTATATGAACATTCAAATATTGAAAATAAACAATCCTAATAATTTAGTGTTCAGAATCAAAAACAACATTTTTATTTGAATTTACACAACTAGATCTTAATGCACATCTTAATATTCAGATTTACATTCAATTTCAGATGTCTTAATCTTAATCGAAATAAATAAAACCTTAAATTTATAACGTATATCTAATCCACGCATTTATTTATCGTCCTTCTGAAGTTAGTTTAGTTGGATTTTGATTTGGCCATTGACTTTTTTTTCTTTCAATTTCTCCATTTATTTAATATTAGGATAATGGTACTTTTATCGTAATTTTCTAAAATGATCTATTAGATAAGGAATGATTTAACTTATGCTTACTTAAGTAATGATTACTAATTCAAAAAAGTTATGTTTCTTCTTGATTTTAATTGTTTTTAACAAATAAAATATTAAATACACGTTCATATTTAATTTAAAAATTTGAATTTGAGCTAAGAATATAAAGAGCTTTATCCTAAAGAAAAATTTATATCAATATACCATGATGGTAAACCAAAATAAATAAAATGATACAATTTACTCTGAACCAATAAAACAAATTAAATTTAGTTATTCAAAATTATCCATACATAAAGCAAAAAATAAATTTCTTTAATTTAATTGATTTTATTATATAACAGGTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCAGTAAGTACCTATTTATTAGATTAAATAATGTATATATATATTTTTAAAAAATAATTATGTTGTGTTTTTAACTGGAATTAAAAAAATCATAATAATTTTTTCTAATTAATTTTATTTGTATACTATATAGGTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAGGTAAATATTTATTCGCATTCAATATTTTTATTAAATTAAATAATTTAATTTTATAATTAACAATTAAATTAAATATTATATCACTTAATCGTAATTAAATAAAAAAATAACTGTACGAAAGAAAACACGTCTTGCATTCGAGTTGTTTGTTGTAAACACAAAATATGAGTAACTTTTTTTTTTTTAAAACTCAAAATAAGATCACGATCCATTGACTAATATATGTCGCTATATATATAACTTATATAATGAAACAATTTATTTTATTATTGTAATATAAATAATCGAATAAATAATTTTGAGATTGGACAAATACTCCCAATTAATCAAATACAAAATAAAAATAATTCTATAATTATTTTTGAGATTATTATTTGTTTTTCCTCATATGACCCCTAATTCTCTTTTTTTTTGTTCTTCAAAAAGAAATTTAGCGTAGTAAAAAGAAGATATTATTTTAAAAATTTTCGTTTGAGGTTTAATATTTATTTTAAAGTCTGATGAATTTTATAAGCTTTTTTATTTTTTATTTTGTTGAAGGCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAGGTATCTCATTACTTACAATTAATTATAGTGTACTCATTCACAATTCATACAGTAATATTAGTAATTTTTGATATATCGTTGTTGTTGCAGGATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</genome_strand>
        <mrna_strand>ATTCTTTCTCTCATTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAAAAAAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTTCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCA..................................................................................................................................GTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAG..........................................................................................GATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596060" ref_strand="+" ref_description="SGN-U596060 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaagaaaagaaaaaaatggcttgtggtgatgatgataaattgtgtcttgattcaataagacagagtttaattagacaagaaaataccattatttttatccttattgaaataattcaacttaccaataaattcaactttatacttacaacatttacctcctctttccaattttttatgatccttattttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="-" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="36084" stop="35293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35784" g_stop="35593" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="-" ref_id="SGN-U596060" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35784" e_stop="35593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAA-TCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTTATTTCAATA</genome_strand>
        <mrna_strand>AAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGACAGAGTTTAATTAGACAAGAAAATACCATTATTTTTATCCTTATTGAAATAATTCAACTTACCAATAAATTCAACTTTATACTTACAACATTTACCTCCTCTTTCCAATTTTTTATGATCCTTATTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="+" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="40033" stop="40810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40333" g_stop="40509" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40333" e_stop="40509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACAAGCACGAAGTATATCCTCCAACACTTGAATCGTTCGCTCAGATTGACCACCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0121I03-UIgCS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0121I03.1" temp_strand="+" temp_description="C00SLm0121I03.1  CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 sequenced_by:sanger upload_account_name:uk">
        <position start="40248" stop="41082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40548" g_stop="41039" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0121I03.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0121I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40548" e_stop="41039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGTATGCAGTGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGTAACCGAACGATTTTTGAGATATAGATTTTGGCTAACTTCTCGGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTAGACATTTGGCAATAAAGTCAACAATATCA-GCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACAGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13537" PGL_stop="9404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13537" e_stop="13175"/>
            <exon e_start="13006" e_stop="12946"/>
            <exon e_start="11695" e_stop="11403"/>
            <exon e_start="11004" e_stop="10858"/>
            <exon e_start="9900" e_stop="9404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="13537" e_stop="13175" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="13174" i_stop="13007" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13006" e_stop="12946" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.853">
            <gDNA_intron_boundary i_start="12945" i_stop="11696" i_length="1250"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11695" e_stop="11403" e_length="293"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="11402" i_stop="11005" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11004" e_stop="10858" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10857" i_stop="9901" i_length="957"/>
          </intron>
          <exon e_serial="5" e_score="0.970">
            <gDNA_exon_boundary e_start="9900" e_stop="9404" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13537" stop="13175"/>
              <exon start="13006" stop="12946"/>
              <exon start="11695" stop="11403"/>
              <exon start="11004" stop="10858"/>
              <exon start="9900" stop="9404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTCCACTCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTTCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAG : CTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATG : AATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAA : GAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAA : GTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTTGGTGTAAATGAAATGAACAGTGTCTATTCTACTTTATTTGCATAGAATC</gDNA_template>
            <first_frame> S  S  T  P  D  R  V  G  *  D  K  L  Y  Y  P  Q  E  A  K  N  R  R  K  F  Y  Q  E  *  F  I  L  C  P  *  K  F  N  L  D  A  S  Q  F  T  L  Q  *  F  E  S  *  K  Y  T  L  F  V  D  R  R  K  E  M  L  M  I  Q  S  T  I  S  L  P  L  Q  K  S  V  L  V  P  A  K  I  A  T  S  G  S  K  N  G  C  F  L  D  L  N  G  R  C  G  S  K  S  A  S  Y  H  F  P  R  R  P  I  K  G  N  S  I  Q  :  L  K  I  Y  A  R  K  S  E  S  L  P  I  L  L  S  E  K  V  D   : E  L  P  E  M  L  L  N  G  G  D  I  T  I  S  S  G  E  I  L  S  L  S  A  F  S  C  G  S  I  F  W  L  T  S  G  Q  V  A  L  A  S  E  G  V  R  V  N  M  V  Y  E  V  G  E  L  F  E  L  G  I  Q  L  T  Y  L  L  L  L  L  A  L  L  G  V  G  S  F  F  V  I  R  Q  V  L  V  R  R  E  L  D  L  S  A  K  E  L  Q  :  E  Q  V  R  S  G  D  A  S  A  T  E  L  F  E  L  G  A  V  M  L  R  R  K  F  Y  P  A  A  T  K  Y  L  L  Q  A  V  E  K  W  D  G  D  D  Q  D  L  A  Q  :  V  Y  N  A  L  G  V  S  Y  V  L  D  G  K  I  D  K  G  I  A  Q  F  E  N  A  V  K  V  Q  P  G  Y  V  T  A  W  N  N  L  G  D  A  Y  E  K  T  K  D  L  T  S  A  L  N  A  F  E  E  V  L  L  F  D  P  N  N  K  I  A  R  P  R  R  D  A  L  K  D  K  V  T  M  Y  K  G  V  S  V  K  S  K  K  S  *  Y  S  *  P  I  S  S  F  T  H  L  C  *  L  S  F  *  G  A  L  F  V  L  F  F  R  F  L  L  H  K  W  N  S  L  S  W  P  C  *  S  F  G  C  S  I  I  E  V  V  *  T  F  C  F  W  C  K  *  N  E  Q  C  L  F  Y  F  I  C  I  E   </first_frame>
            <second_frame>  V  P  L  L  I  E  L  V  E  I  N  F  I  I  L  K  K  Q  K  T  E  E  N  F  T  K  N  D  S  S  Y  A  P  K  N  S  I  L  M  L  P  S  L  L  F  S  N  L  N  H  K  N  I  P  F  L  *  I  E  E  K  K  C  *  *  Y  S  P  P  F  H  F  L  F  K  N  L  F  L  F  Q  L  K  L  Q  Q  V  G  V  K  M  V  V  F  L  I  *  M  V  G  V  V  Q  N  Q  L  L  I  T  F  Q  E  D  P  L  R  E  I  Q  F  S :   *  R  F  M  P  G  N  Q  N  H  S  Q  F  C  F  Q  R  K  L  M  :  N  C  Q  R  C  C  *  M  A  E  I  L  P  L  V  V  G  R  F  F  L  Y  Q  L  S  H  V  D  L  S  S  G  *  H  L  G  K  W  H  *  Q  V  K  V  S  E  *  I  W  F  M  R  S  G  N  Y  L  N  W  E  S  S  L  L  T  C  F  Y  Y  *  H  C  L  G  L  E  V  S  L  *  F  G  K  S  L  S  A  E  S  L  I  F  L  P  K  N  C  K :   S  K  L  E  V  V  M  P  V  P  Q  S  F  L  N  L  E  L  *  C  *  G  E  N  S  T  Q  L  Q  P  N  T  F  F  R  Q  *  K  S  G  M  E  M  I  R  I  L  P  K :   F  T  M  P  L  V  S  V  M  Y  L  M  G  K  L  T  K  E  L  L  S  L  K  M  L  *  K  F  N  L  V  M  S  R  H  G  T  T  L  A  M  H  M  R  K  P  K  T  *  H  L  L  *  M  H  L  K  R  Y  F  F  L  I  L  T  T  K  *  L  V  L  G  A  M  H  *  R  T  K  *  Q  C  I  K  E  Y  Q  *  N  L  R  R  V  D  I  A  S  P  L  V  L  L  H  T  C  A  D  Y  L  F  E  E  L  F  L  F  S  F  S  A  F  S  Y  T  S  G  I  R  C  H  G  H  V  E  V  L  D  V  P  *  *  K  L  F  E  L  S  V  F  G  V  N  E  M  N  S  V  Y  S  T  L  F  A  *  N  </second_frame>
            <third_frame>   F  H  S  *  *  S  W  L  R  *  T  L  L  S  S  R  S  K  K  Q  K  K  I  L  P  R  M  I  H  L  M  P  L  K  I  Q  S  *  C  F  P  V  Y  S  S  V  I  *  I  I  K  I  Y  P  F  C  R  *  K  K  R  N  A  N  D  T  V  H  H  F  T  S  S  S  K  I  C  S  C  S  S  *  N  C  N  K  W  E  *  K  W  L  F  S  *  F  K  W  S  V  W  F  K  I  S  F  L  S  L  S  K  K  T  H  *  G  K  F  N  S   : A  E  D  L  C  Q  E  I  R  I  T  P  N  F  A  F  R  E  S  *  * :   I  A  R  D  V  A  E  W  R  R  Y  Y  H  *  *  W  G  D  S  F  S  I  S  F  L  M  W  I  Y  L  L  V  D  I  W  A  S  G  I  S  K  *  R  C  Q  S  K  Y  G  L  *  G  R  G  I  I  *  T  G  N  P  A  Y  L  P  A  F  T  T  S  I  A  W  G  W  K  F  L  C  D  S  A  S  P  C  P  Q  R  A  *  S  F  C  Q  R  I  A   : R  A  S  *  K  W  *  C  Q  C  H  R  A  F  *  T  W  S  C  D  V  E  E  K  I  L  P  S  C  N  Q  I  P  S  S  G  S  R  K  V  G  W  R  *  S  G  S  C  P   : S  L  Q  C  P  W  C  Q  L  C  T  *  W  E  N  *  Q  R  N  C  S  V  *  K  C  C  K  S  S  T  W  L  C  H  G  M  E  Q  P  W  R  C  I  *  E  N  Q  R  L  N  I  C  S  K  C  I  *  R  G  T  S  F  *  S  *  Q  Q  N  S  S  S  *  A  R  C  I  E  G  Q  S  N  N  V  *  R  S  I  S  E  I  *  E  E  L  I  *  L  A  H  *  F  F  Y  T  L  V  L  I  I  F  L  R  S  S  F  C  S  L  F  P  L  S  P  T  Q  V  E  F  V  V  M  A  M  L  K  F  W  M  F  H  N  R  S  C  L  N  F  L  F  L  V  *  M  K  *  T  V  S  I  L  L  Y  L  H  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0121I03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13384" stop="13175"/>
                    <exon start="13006" stop="12946"/>
                    <exon start="11695" stop="11403"/>
                    <exon start="11004" stop="10858"/>
                    <exon start="9900" stop="9619"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTLFVDRRKEMLMIQSTISLPLQKSVLVPAKIATSGSKNGCFLDLNGRCGSKSASYHFPRRPIKGNSIQLKIYARKSESLPILLSEKVDELPEMLLNGGDITISSGEILSLSAFSCGSIFWLTSGQVALASEGVRVNMVYEVGELFELGIQLTYLLLLLALLGVGSFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKYLLQAVEKWDGDDQDLAQVYNALGVSYVLDGKIDKGIAQFENAVKVQPGYVTAWNNLGDAYEKTKDLTSALNAFEEVLLFDPNNKIARPRRDALKDKVTMYKGVSVKSKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9455" PGL_stop="9907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9455" e_stop="9907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="9455" e_stop="9907" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9455" stop="9907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAAAGTTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCCTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGTTAAGTCTTTGGTTTTCTCATATGCATCGCCAAGGTTGTTCCATGCCGTGACATAACCAGGTTGAACTTTTACAGCATTTTCAAACTGAGCAATTCCTTTGTCAATTTTCCCATCAAGTACATAACTGACACCAAGGGCATTGTAAACCTGTAAA</gDNA_template>
            <first_frame> K  Q  K  V  Q  T  T  S  I  M  E  H  P  K  L  Q  H  G  H  D  N  E  F  H  L  C  R  R  K  R  K  K  R  T  K  R  A  P  Q  K  D  N  Q  H  K  C  V  K  E  L  M  G  *  L  Y  Q  L  F  L  D  F  T  D  T  P  L  Y  I  V  T  L  S  F  N  A  S  R  L  G  R  A  I  L  L  L  G  S  K  R  S  T  S  S  N  A  F  R  A  D  V  K  S  L  V  F  S  Y  A  S  P  R  L  F  H  A  V  T  *  P  G  *  T  F  T  A  F  S  N  *  A  I  P  L  S  I  F  P  S  S  T  *  L  T  P  R  A  L  *  T  C  K </first_frame>
            <second_frame>  N  R  K  F  K  Q  L  L  L  W  N  I  Q  N  F  N  M  A  M  T  T  N  S  T  C  V  G  E  S  G  K  R  E  Q  K  E  L  L  K  K  I  I  S  T  S  V  *  K  N  *  W  A  S  Y  I  N  S  S  *  I  S  L  I  L  L  Y  T  L  L  L  C  P  S  M  H  R  A  *  D  E  L  F  C  C  *  D  Q  K  E  V  P  L  Q  M  H  L  E  Q  M  L  S  L  W  F  S  H  M  H  R  Q  G  C  S  M  P  *  H  N  Q  V  E  L  L  Q  H  F  Q  T  E  Q  F  L  C  Q  F  S  H  Q  V  H  N  *  H  Q  G  H  C  K  P  V   </second_frame>
            <third_frame>   T  E  S  S  N  N  F  Y  Y  G  T  S  K  T  S  T  W  P  *  Q  R  I  P  L  V  *  E  K  A  E  K  E  N  K  K  S  S  S  K  R  *  S  A  Q  V  C  K  R  T  N  G  L  A  I  S  T  L  L  R  F  H  *  Y  S  F  I  H  C  Y  F  V  L  Q  C  I  A  P  R  T  S  Y  F  V  V  R  I  K  K  K  Y  L  F  K  C  I  *  S  R  C  *  V  F  G  F  L  I  C  I  A  K  V  V  P  C  R  D  I  T  R  L  N  F  Y  S  I  F  K  L  S  N  S  F  V  N  F  P  I  K  Y  I  T  D  T  K  G  I  V  N  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0121I03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9614" stop="9808"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQLFLDFTDTPLYIVTLSFNASRLGRAILLLGSKRSTSSNAFRADVKSLVFSYASPRLFHAVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29780" PGL_stop="26874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29780" e_stop="29709"/>
            <exon e_start="28468" e_stop="28246"/>
            <exon e_start="28132" e_stop="27968"/>
            <exon e_start="27245" e_stop="27095"/>
            <exon e_start="27018" e_stop="26874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.986"/>
          <exon-intron don_prob="0.980" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="29780" e_stop="29709" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29708" i_stop="28469" i_length="1240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28468" e_stop="28246" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.787">
            <gDNA_intron_boundary i_start="28245" i_stop="28133" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28132" e_stop="27968" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.943">
            <gDNA_intron_boundary i_start="27967" i_stop="27246" i_length="722"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27245" e_stop="27095" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27094" i_stop="27019" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="27018" e_stop="26874" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29780" stop="29709"/>
              <exon start="28468" stop="28246"/>
              <exon start="28132" stop="27968"/>
              <exon start="27245" stop="27095"/>
              <exon start="27018" stop="26874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGA : GGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAG : GGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTT : TGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACA : ATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTTTAGTAGTGCCTCTAGAATAGATTCGTGGTACTATTGTATGCTC</gDNA_template>
            <first_frame> D  G  P  F  T  P  *  N  T  M  W  H  S  T  I  V  I  R  D  L  I  *  A  *  :  G  A  Y  W  A  T  R  L  M  V  F  L  E  S  S  M  L  F  L  V  L  V  E  R  L  L  *  S  F  *  K  S  T  V  H  W  R  I  Y  L  M  L  L  Q  *  D  Q  W  A  G  S  M  H  K  M  P  L  S  S  T  L  I  I  C  A  E  I  M  K  F  S  L  *  R   : G  M  S  V  S  I  L  R  S  N  G  L  M  R  G  M  R  V  M  T  H  L  F  Y  P  T  S  S  L  R  W  K  T  V  G  I  L  I  W  K  R  D  R  I  P  L  V  E  I  A  R  R  K  H  F   : L  C  K  L  *  C  K  L  Y  N  L  K  N  K  D  L  D  A  S  A  E  V  S  N  *  T  N  R  R  L  P  N  L  A  R  R  F  D  Q  M  N  R  T  E  S  E  Y  P  N  S  Q :   *  K  H  T  V  E  N  L  A  I  I  P  L  G  R  I  T  K  E  E  T  S  E  V  *  N  V  Q  *  V  *  V  S  F  S  S  A  S  R  I  D  S  W  Y  Y  C  M  L </first_frame>
            <second_frame>  M  V  L  L  H  L  K  T  L  C  G  T  V  Q  L  *  S  E  I  *  F  E  P  E :   V  H  T  G  R  R  G  *  W  C  S  W  N  P  A  C  C  S  W  F  W  S  K  D  C  F  E  A  F  E  K  A  R  Y  T  G  E  F  T  *  C  C  F  S  K  I  S  G  Q  A  V  C  T  R  C  P  Y  Q  V  R  *  L  S  A  Q  K  L  *  S  S  L  S  E  E  :  G  C  Q  Y  P  Y  *  G  A  M  A  *  *  E  G  C  A  *  *  L  T  C  F  I  Q  L  R  H  F  A  G  R  Q  *  E  S  *  F  G  K  E  I  A  F  H  W  L  K  L  P  E  E  S  I  F  :  C  V  S  Y  N  V  S  S  T  T  *  R  T  K  I  L  M  L  Q  Q  K  Y  Q  T  K  P  I  D  D  Y  R  T  *  P  E  D  L  I  R  *  T  G  L  N  Q  N  I  Q  I  H   : N  R  S  I  Q  *  K  T  *  L  L  F  L  L  D  E  S  L  R  K  R  L  L  R  S  K  M  Y  S  K  F  E  F  L  L  V  V  P  L  E  *  I  R  G  T  I  V  C   </second_frame>
            <third_frame>   W  S  F  Y  T  L  K  H  Y  V  A  Q  Y  N  C  D  P  R  S  D  L  S  L   : R  C  I  L  G  D  E  V  D  G  V  P  G  I  Q  H  V  V  P  G  F  G  R  K  T  A  L  K  L  L  K  K  H  G  T  L  E  N  L  L  N  A  A  S  V  R  S  V  G  R  Q  Y  A  Q  D  A  L  I  K  Y  A  D  Y  L  R  R  N  Y  E  V  L  S  L  K  R :   D  V  S  I  H  I  E  E  Q  W  L  N  E  R  D  A  R  N  D  S  L  V  L  S  N  F  V  T  S  L  E  D  S  R  N  L  N  L  E  K  R  S  H  S  I  G  *  N  C  Q  K  K  A  F  F :   V  *  V  I  M  *  A  L  Q  P  E  E  Q  R  S  *  C  F  S  R  S  I  K  L  N  Q  *  T  I  T  E  L  S  Q  K  I  *  S  D  E  P  D  *  I  R  I  S  K  F  T  :  I  E  A  Y  S  R  K  L  S  Y  Y  S  S  W  T  N  H  *  G  R  D  F  *  G  L  K  C  T  V  S  L  S  F  F  *  *  C  L  *  N  R  F  V  V  L  L  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0121I03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29778" stop="29709"/>
                    <exon start="28468" stop="28246"/>
                    <exon start="28132" stop="27991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSFYTLKHYVAQYNCDPRSDLSLRCILGDEVDGVPGIQHVVPGFGRKTALKLLKKHGTLENLLNAASVRSVGRQYAQDALIKYADYLRRNYEVLSLKRDVSIHIEEQWLNERDARNDSLVLSNFVTSLEDSRNLNLEKRSHSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35858" PGL_stop="32362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35858" e_stop="35559"/>
            <exon e_start="33835" e_stop="33749"/>
            <exon e_start="33618" e_stop="33472"/>
            <exon e_start="32931" e_stop="32839"/>
            <exon e_start="32748" e_stop="32362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="35858" e_stop="35559" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35558" i_stop="33836" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33835" e_stop="33749" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33748" i_stop="33619" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33618" e_stop="33472" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="33471" i_stop="32932" i_length="540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32931" e_stop="32839" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32838" i_stop="32749" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32748" e_stop="32362" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35858" stop="35559"/>
              <exon start="33835" stop="33749"/>
              <exon start="33618" stop="33472"/>
              <exon start="32931" stop="32839"/>
              <exon start="32748" stop="32362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35784" stop="35593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTTCTCTCATTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAAAAAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAG : GTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCA : GTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAG : GCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAG : GATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</gDNA_template>
            <first_frame> I  L  S  L  I  F  F  H  P  L  P  T  K  N  L  F  H  N  F  V  N  Q  K  K  K  K  E  K  K  K  M  A  C  G  D  D  D  K  L  C  L  D  S  I  R  K  S  L  I  R  Q  E  D  T  I  I  F  N  L  I  E  R  I  K  F  P  I  N  P  T  L  Y  K  Q  Q  L  P  P  P  S  N  F  S  G  S  L  F  Q  Y  L  F  Q  E  T  E  S  L  Q  S  K  :  V  G  R  Y  L  A  P  E  E  N  P  F  F  P  D  N  L  S  D  S  I  I  P  L  T  K  C  T  P  :  V  L  H  P  A  A  E  S  V  N  V  N  E  K  I  L  D  I  Y  I  N  Q  M  L  P  L  F  C  T  E  V  N  D  D  A  N  F  A  T  T  A  A  C  D  I  Q  L  L  Q  :  A  L  S  R  R  I  H  Y  G  K  F  V  A  E  V  K  F  R  D  S  I  D  E  Y  K  P  F  I  L  A  Q  :  D  R  D  A  L  M  K  L  L  T  F  E  A  V  E  E  M  V  K  K  R  V  A  K  K  A  K  V  F  G  Q  E  V  S  L  N  D  N  A  E  E  V  K  G  K  I  D  P  L  L  V  S  R  L  Y  D  E  W  V  M  P  L  T  K  L  V  E  V  E  Y  L  L  R  R  L  D  *  L  S  L  L  L  L  L  *  *  F  S  S  P  L  L  S  F  V  I  V  I  D  R  H  L  C  R  *  K  *  R  F  M  T  F  V  N  C  Q  K  V  E  L  I  V  I  L  *  L  W  I  * </first_frame>
            <second_frame>  F  F  L  S  F  F  S  I  L  S  P  Q  K  I  F  F  T  I  L  S  I  K  K  K  K  K  K  R  K  K  W  L  V  V  M  M  I  N  C  V  L  I  Q  *  E  R  V  *  L  D  K  K  I  P  L  F  S  T  L  L  K  E  S  N  S  Q  *  I  Q  L  Y  T  N  N  N  Y  L  L  L  P  I  F  Q  D  P  Y  F  N  T  C  F  K  K  Q  N  P  F  N  P  R :   L  V  D  I  W  P  Q  R  K  I  L  S  S  Q  I  I  C  L  T  Q  S  Y  H  L  P  N  A  H  Q :   F  C  I  L  Q  Q  N  Q  *  M  *  M  R  K  Y  W  I  F  I  *  I  R  C  F  H  Y  F  V  L  R  L  M  M  M  Q  T  L  Q  L  L  L  L  V  T  F  S  S  C  R :   H  Y  L  E  G  F  T  M  E  N  L  L  L  K  L  N  L  E  I  V  L  M  N  I  N  H  L  F  L  L  R :   I  E  M  L  *  *  S  Y  *  H  L  K  R  L  K  R  W  *  R  R  E  *  R  R  K  L  K  C  L  V  K  K  *  A  *  T  I  T  L  K  K  *  R  A  K  L  I  H  C  *  F  H  V  Y  M  M  N  G  L  C  L  *  L  N  L  S  K  L  N  T  S  C  V  V  L  I  N  *  A  Y  Y  Y  Y  C  N  D  F  R  H  H  Y  Y  H  L  L  L  L  S  I  D  I  Y  A  D  E  N  D  D  S  *  H  L  *  I  A  K  K  L  S  *  L  S  F  F  S  Y  G  Y   </second_frame>
            <third_frame>   S  F  S  H  F  F  P  S  S  P  H  K  K  S  F  S  Q  F  C  Q  S  K  K  K  K  R  K  E  K  N  G  L  W  *  *  *  *  I  V  S  *  F  N  K  K  E  F  N  *  T  R  R  Y  H  Y  F  Q  P  Y  *  K  N  Q  I  P  N  K  S  N  F  I  Q  T  T  I  T  S  S  F  Q  F  F  R  I  L  I  S  I  L  V  S  R  N  R  I  P  S  I  Q   : G  W  *  I  F  G  P  R  G  K  S  F  L  P  R  *  F  V  *  L  N  H  T  T  Y  Q  M  H  T   : S  F  A  S  C  S  R  I  S  K  C  K  *  E  N  I  G  Y  L  Y  K  S  D  A  S  T  I  L  Y  *  G  *  *  *  C  K  L  C  N  Y  C  C  L  *  H  S  A  L  A   : G  T  I  *  K  D  S  L  W  K  I  C  C  *  S  *  I  *  R  *  Y  *  *  I  *  T  I  Y  S  C  S   : G  *  R  C  F  N  E  V  I  N  I  *  S  G  *  R  D  G  E  E  E  S  S  E  E  S  *  S  V  W  S  R  S  E  L  K  R  *  R  *  R  S  E  G  Q  N  *  S  I  V  S  F  T  F  I  *  *  M  G  Y  A  F  D  *  T  C  R  S  *  I  P  P  A  S  S  *  L  I  E  L  I  I  I  I  V  M  I  F  V  T  I  I  I  I  C  Y  C  Y  R  S  T  F  M  Q  M  K  M  T  I  H  D  I  C  E  L  P  K  S  *  A  N  C  H  S  L  V  M  D  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0121I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35858" stop="35559"/>
                    <exon start="33835" stop="33749"/>
                    <exon start="33618" stop="33472"/>
                    <exon start="32931" stop="32839"/>
                    <exon start="32748" stop="32518"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSLIFFHPLPTKNLFHNFVNQKKKKEKKKMACGDDDKLCLDSIRKSLIRQEDTIIFNLIERIKFPINPTLYKQQLPPPSNFSGSLFQYLFQETESLQSKVGRYLAPEENPFFPDNLSDSIIPLTKCTPVLHPAAESVNVNEKILDIYINQMLPLFCTEVNDDANFATTAACDIQLLQALSRRIHYGKFVAEVKFRDSIDEYKPFILAQDRDALMKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAEEVKGKIDPLLVSRLYDEWVMPLTKLVEVEYLLRRLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40333" PGL_stop="40509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40333" e_stop="40509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="40333" e_stop="40509" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40333" stop="40509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACAAGCACGAAGTATATCCTCCAACACTTGAATCGTTCGCTCAGATTGACCACCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  M  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  Q  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  P </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  C  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  K  H  E  V  Y  P  P  T  L  E  S  F  A  Q  I  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  V  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  S  T  K  Y  I  L  Q  H  L  N  R  S  L  R  L  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0121I03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40548" PGL_stop="41039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40548" e_stop="41039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="40548" e_stop="41039" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40548" stop="41039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGTATGCAGTGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGTAACCGAACGATTTTTGAGATATAGATTTTGGCTAACTTCTCGGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTAGACATTTGGCAATAAAGTCAACAATATCAGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACAGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  *  P  N  D  F  *  D  I  D  F  G  *  L  L  G  I  V  S  H  L  D  R  N  E  M  S  R  F  S  *  P  I  N  N  H  P  N  R  V  I  L  T  H  C  L  W  K  T  N  H  K  I  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  *  T  F  G  N  K  V  N  N  I  S  F  I  L  L  H  Q  K  C  C  F  R  S  Q  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </first_frame>
            <second_frame>  P  N  S  V  C  S  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  F  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  L  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  R  H  L  A  I  K  S  T  I  S  A  S  F  Y  S  T  K  S  V  A  L  G  H  S  T  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </second_frame>
            <third_frame>   P  I  P  Y  A  V  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  P  H  V  T  E  R  F  L  R  Y  R  F  W  L  T  S  R  H  C  K  S  P  *  P  E  *  N  E  Q  I  *  L  T  Y  Q  Q  S  P  K  *  S  H  T  Y  S  L  S  L  E  D  Q  P  Q  N  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  S  G  V  H  T  L  L  V  D  S  L  D  I  W  Q  *  S  Q  Q  Y  Q  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0121I03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 13976 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 1996 bytes was the average size of a spliced alignment
$ 11792 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1965 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:37:33
-->
