<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:44:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="1419" stop="2443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1719" g_stop="2143" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1719" e_stop="2143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTATTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACAAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATTCAACTCTGTTAGTTCCTAATCAAAGATTGAGATGAATATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTCTTTTTTTCCTTTTTGGCTGCTGAAAAACTCT-TTTTATATAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCT-CTCT-TTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="12763" stop="14144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13081" g_stop="13844" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13081" e_stop="13844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAACACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTTTCTCATAA-TTTCATTATGTCGAATTTTTCCAAACTTGAGTTTGTGGCATTAGATATTTCAGGAAAGAATTATCTTTCATGGGTACTCGATGCAGAGATTCACTTGACTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCTAGTCATGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATTTGACGGTAAAAAATCCACTTGAATTGTGGACTAGTTTAAGAGGGAGATATGACAACCTAAAGGCAACAGTATTGCCAAGATCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACTGTAATTGAATACAACTCTGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTAGGGAGGCTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCAAATGTGATATTGCAACAACAATATCGTGAAAAAGGTTTTTAGAAATATTCTGAACTAATCTCATGTCTTTTTGGTGGCTGAGCAACATAATTCTCTTTTAATGAAAAATCATGAAGATCGTCCCACTAGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGGAGAACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGTTATAATAATGCACGGGGACGTGCCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTC-TTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="15942" stop="17252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16242" g_stop="16953" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16242" e_stop="16953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAATGCAACAAGATGAAGATTTTGAGCTAAAATATGTTCACGAATGTAGACAGAGAAAAGATTGACCAAAATGGAAGGATGCAATTCAAGCTGAATTGACTTCACTAGAAAATCCTAAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACTAAAAAAGAAATGATAAAGTTGAAGTCATGAGATATAAGGACCTACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGAATTGATTAAATGGAGACATATTCTCGAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACATGAAATGTGTCTAATGGACATTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGACACATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACCTGTTCAATAAAGCTTCAGAAATCTCTTTATAGATTGAAACAATCAGGAAAGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAATGGTCGGGGTTTGAATTTGTTATAATAGCTGTGTATGTTGATGATTTGAACATTATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTT</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTAC-GGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16519" stop="17757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16819" g_stop="17457" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16819" e_stop="17457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAATGGTCGGGGTTTGAATTTGTTATAATAGCTGTGTATGTTGATGATTTGAACATTATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTTAAATGAAAGATCTTGGCAAGACAAAATTTTGTCCCAGCCAACAGATTAAGAGTTTGTCAAATGGAATACTTGTTCATTAATCAACATACACAAAAAAGATACTAAAGTGTTTTTACATGGATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16559" stop="17787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16859" g_stop="17487" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16859" e_stop="17487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGCTGTGTATGTTGATGATTTGAACATTATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTTAAATGAAAGATCTTGGCAAGACAAAATTTTGTCCCAGCCAACAGATTAAGAGTTTGTCAAATGGAATACTTGTTCATTAATCAACATACACAAAAAAGATACTAAAGTGTTTTTACATGGATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGACATGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16559" stop="17735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16859" g_stop="17435" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16859" e_stop="17435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGCTGTGTATGTTGATGATTTGAACATTATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTTAAATGAAAGATCTTGGCAAGACAAAATTTTGTCCCAGCCAACAGATTAAGAGTTTGTCAAATGGAATACTTGTTCATTAATCAACATACACAAAAAAGATACTAAAGTGTTTTTACATGGATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16617" stop="17762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16909" g_stop="17462" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16909" e_stop="17462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTTAAATGAAAGATCTTGGCAAGACAAAATTTTGTCCCAGCCAACAGATTAAGAGTTTGTCAAATGGAATACTTGTTCATTAATCAACATACACAAAAAAGATACTAAAGTGTTTTTACATGGATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTAT-CCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16774" stop="18138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17074" g_stop="17838" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17074" e_stop="17838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGACATGGCAATATCTTGGCGATCAATGAAGCAAACTTTTGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCTATGAAGCAAATCGAGAGTGCATCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATATACGAAGATAAAGCAGCATGTATAACTCAATTGAAAGGAGGATACATCAAAGGAGATCAGACAAAGCATATCTCACCAAAGTTCATTTTCACGCATGATCTTCAACAAAAT-GGTGAAATAGAAGTTCAATAAATTCATTCAAGTGATAATCTTGCTGATTTACTCACTAAGGCATTTCCAACATCAACGTTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="16842" stop="17972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17101" g_stop="17672" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17101" e_stop="17672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGACATGGCAATATCTTGGCGATCAATGAAGCAAACTTTTGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCTATGAAGCAAATCGAGAGTGCATCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATATACGAAGATAAAGCAGCATGTATAACTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTC-GACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="17106" stop="18104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17406" g_stop="17804" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17406" e_stop="17804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGACATGGCAATATCTTGGCGATCAATGAAGCAAACTTTTGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCTATGAAGCAAATCGAGAGTGCATCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATATACGAAGATAAAGCAGCATGTATAACTCAATTGAAAGGAGGATACATCAAAGGAGATCAGACAAAGCATATCTCACCAAAGTTCATTTTCACGCATGATCTTCAACAAAATGGTGAAATAGAAGTTCAATAAATTCATTCAAGTGATAATCTTGCTGATTTACTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="17292" stop="18268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17592" g_stop="17969" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17592" e_stop="17969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATATACGAAGATAAAGCAGCATGTATAACTCAATTGAAAGGAGGATACATCAAAGGAGATCAGACAAAGCATATCTCACCAAAGTTCATTTTCACGCATGATCTTCAACAAAATGGTGAAATAGAAGTTCAATAAATTCATTCAAGTGATAATCTTGCTGATTTACTCACTAAGGCATTTCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGGATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATC-GGGGG-GGGGGATATGCG-TATACTCTTTTCCTTAACTATGGTTTTGTACCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAC</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="42788" stop="35862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36892" g_stop="36633" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36632" i_stop="36468" i_length="165">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36467" g_stop="36167" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="547" r_length="289" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36892" e_stop="36633"/>
          <exon e_start="36467" e_stop="36167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAG--AAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAAATATAATGAAATTTCAAACGGGTCACACGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAATATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAATTAAAATAAATTTGTCCAATGAATTATCTTTCGATCGATCATTTGGCAAAGCCAAAGCCAAAGCCGAAGCCAAAGCCGAAGCGAGCGAGCGACGACGACGGTGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCAATGAGGGACTATTACCTTTTCTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAA-TCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.....................................................................................................................................................................AATTATCTCTCGATCGATCATTT------GCCAAAGCCGAAGCCGAAGCCGAAG-CG-AGCGAGCGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCC--TT-TTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="42788" stop="35862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36892" g_stop="36633" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36632" i_stop="36468" i_length="165">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36467" g_stop="36167" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="547" r_length="289" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36892" e_stop="36633"/>
          <exon e_start="36467" e_stop="36167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAG--AAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAAATATAATGAAATTTCAAACGGGTCACACGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAATATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAATTAAAATAAATTTGTCCAATGAATTATCTTTCGATCGATCATTTGGCAAAGCCAAAGCCAAAGCCGAAGCCAAAGCCGAAGCGAGCGAGCGACGACGACGGTGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCAATGAGGGACTATTACCTTTTCTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAA-TCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.....................................................................................................................................................................AATTATCTCTCGATCGATCATTT------GCCAAAGCCGAAGCCGAAGCCGAAG-CG-AGCGAGCGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCC--TT-TTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37582" stop="36150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37282" g_stop="36452" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37282" e_stop="36452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGA-TTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAG-AAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAAATATAATGAAATTTCAAACGGGTCACACGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAATATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAATTAAAATAAATTTGTCCAATGAATTATCTTTCGATCG</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAA-TCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAA-AAAATATCTCTCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37582" stop="36412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37282" g_stop="36712" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37282" e_stop="36712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGA-TTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAG-AAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAA-TCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37581" stop="36576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37281" g_stop="36876" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37281" e_stop="36876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGA-TTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37431" stop="38425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37731" g_stop="38125" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37731" e_stop="38125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTGTTCTCCATGATCTGATTGTTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCCTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGTCGAAAAGAAGTCGTGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37435" stop="38397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37735" g_stop="38097" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37735" e_stop="38097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTGTTCTCCATGATCTGATTGTTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCCTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGTCGAAAAGAAGTCGTGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546355" ref_strand="+" ref_description="SGN-E546355 [TUS-69-K21](-)">
      <seq>acattgctaatggtgcaattattactcgcaaatttggggataaaaaatgggatgaagaagttattagagtcctctcactggcatttccaaatcatgaggttgtaggaattgaaggtgctaaggaaattgtactagcaggtggaaatatacattgtatcacacaacagcagccaaccgtcccagaataatcacccaaggttagaaatggggttccatgtcttagcagagggataacaagatttgcatgtacaagtgataacatggaattcttcatgatcacacgtgcaaaactttagtttctgtatttgcttcttcgttcgaaattctggagttgccaaaataatgtctgggtccaggtcaaagtaagattttttggttaaagctttagatttcaatagtattaagtttgatcaaacttgtattcaggcttctatctacgctccctggttcatttttacaccatgaaatgaacgagttgcatgtgcaaatgtttcttaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="77068" stop="75424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76768" g_stop="76671" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76125" g_stop="75724" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="501" r_length="403" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E546355" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76768" e_stop="76671"/>
          <exon e_start="76125" e_stop="75724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAGGTAAGCAAGGAACTTGATCTGCTTGCTATTTCTAAGAGTCGGTAGTTATTGAACATAATGGAAAGACCAATTATAAAAAAATTACCAGGCAACCCTTTTGCAGTAAATATTGCTTCCCATGACCCAGAATGATCGAACCCAAAAATAATAAAGTCACGAGAAAGATTCCTTATAGAAACTCGGATGCTAAACAGAAGAATCCATTGAAAAAAAGAAAGGAACAAACAAGACCAAGCATATGATTATAAATGATGACTATTCATGTACGCATGCATCCACATGCTTATGCATTAGTTTAGTAATCGTTAGACCTACTCCTCGTATGTGCACATACCAGTTCCATTATCATTTAGCACTACAGATTTGGCATTGTAATTGAGAGATGCTAAACATACTTCTTAACCACTATGGTCATGAAATATTTGATGAAAAATGTTGCAGTCTGATACTGCGAACTTATTCTTGCACCGAATATTTCATCACGTTTCAGTTATAAAATCTAATTTTCTCTCCAGAACTCAATTTTGAATATATGATTGCTGCAGGTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAG-TGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTACGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTTAACAA</genome_strand>
        <mrna_strand>ACATTGCTAATGGTGCAATTATTACTCGCAAATTTGGGGATAAAAAATGGGATGAAGAAGTTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGGAATTGAAGGTGCTAAGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGTCCCAGAATAATCACCCAAGGTTAGAAATGGGGTTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTAAGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426233" ref_strand="-" ref_description="SGN-E426233 [STM-46-A20]">
      <seq>gtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaaatacttctgatgccagtggtagaaaaatacaagtgatcaaactccatgtacctgggccactctatatgacagatgaggaagcagctggaatagttcaggatggtgaagctaaacctaggccttcaggtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattactccgcaatttggggataaaaaatgggatgaagaagctatcagagtcctctcactggcatttccaaatcatgaggttgtaggaattgaaggtgctagggaaattgtactggcaggtggaaatatacattgtatcacacagcagcagccaaccggcccagaataatcacccaagattataaatgattccatatcttagcagatggataataagatttggcatttgcaagtgataacatgggaattcttcgcgatcacatgttcaagatgagctttagtttctgtatttgcttgttctttagagattctggagtgcaaaaataatgtctggatccaggtcaaagtacgattttgaggaagccttagatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81556" stop="75549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81256" g_stop="81218" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="95" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79884" g_stop="79843" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="137" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79842" i_stop="77685" i_length="2158">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77684" g_stop="77577" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="245" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76829" g_stop="76671" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="404" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76125" g_stop="75831" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="700" r_length="296" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E426233" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81256" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79843"/>
          <exon e_start="77684" e_stop="77577"/>
          <exon e_start="76829" e_stop="76671"/>
          <exon e_start="76125" e_stop="75831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAGGTAAGCAAGGAACTTGATCTGCTTGCTATTTCTAAGAGTCGGTAGTTATTGAACATAATGGAAAGACCAATTATAAAAAAATTACCAGGCAACCCTTTTGCAGTAAATATTGCTTCCCATGACCCAGAATGATCGAACCCAAAAATAATAAAGTCACGAGAAAGATTCCTTATAGAAACTCGGATGCTAAACAGAAGAATCCATTGAAAAAAAGAAAGGAACAAACAAGACCAAGCATATGATTATAAATGATGACTATTCATGTACGCATGCATCCACATGCTTATGCATTAGTTTAGTAATCGTTAGACCTACTCCTCGTATGTGCACATACCAGTTCCATTATCATTTAGCACTACAGATTTGGCATTGTAATTGAGAGATGCTAAACATACTTCTTAACCACTATGGTCATGAAATATTTGATGAAAAATGTTGCAGTCTGATACTGCGAACTTATTCTTGCACCGAATATTTCATCACGTTTCAGTTATAAAATCTAATTTTCTCTCCAGAACTCAATTTTGAATATATGATTGCTGCAGGTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTT-GCATGTACAAGTGATAACAT-GGAATTCTTCATGATCACACGTGCAA-A--A-CTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCA</genome_strand>
        <mrna_strand>GTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATACAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATCAGAGTCCTCTCACTGGCATTTCCAAATCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTGGCAGGTGGAAATATACATTGTATCACACAGCAGCAGCCAACCGGCCCAGAATAATCACCCAAGATTATAAAT--GATTCCATATCTTAGCAGATGGATAATAAGATTTGGCATTTGCAAGTGATAACATGGGAATTCTTCGCGATCACATGTTCAAGATGAGCTTTAGTTTCTGTATTTGCTTGTTCTTTAGAGATTCTGGAGTGCAAAAATAATGTCTGGATCCAGGTCAAAGTACGATTTTGAGG---AAGCCTTAGATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589497" ref_strand="-" ref_description="SGN-E589497 [43073]">
      <seq>tgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgttgttttgttgtcttggactgatgatctatctgatgaacagtatgaaagatcctttgaagcactctctattcttgaaaatacttctgatgccagtggtagaaaaatacaagtgatcaaactccatgtacctgggccactctatatgacagatgaggaagcagctggaatagttcaggatggtgaagctaaacctaggccttcaggtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattactccgcaatttggggataaaaaatgggatgaagaagctattagagtcctctcactggcatttccaaatcatgaggttgtaggaattgaaggtgctagggaaattgtactggcaggtggaaatatacattgtatcacacagcagcagccaaccggcccagaataatcacccaagattataaatgattccatatcttagcagatggataataagatttggcatttgcaagtgataacatgggaattcttcgcgatcacatgttcaagatgagctttagtttgtgtatttgcttgttctttcgagattctggagtgcaaaaataatgtctggatccaggtcaaagtacgattttttttaaagccttagattttcaataaaaaaaaaaaaaaacataaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="78105" stop="75717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77805" g_stop="77577" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76829" g_stop="76671" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="388" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76125" g_stop="75863" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="655" r_length="267" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="703"/>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E589497" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589497" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77805" e_stop="77577"/>
          <exon e_start="76829" e_stop="76671"/>
          <exon e_start="76125" e_stop="75863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAGGTAAGCAAGGAACTTGATCTGCTTGCTATTTCTAAGAGTCGGTAGTTATTGAACATAATGGAAAGACCAATTATAAAAAAATTACCAGGCAACCCTTTTGCAGTAAATATTGCTTCCCATGACCCAGAATGATCGAACCCAAAAATAATAAAGTCACGAGAAAGATTCCTTATAGAAACTCGGATGCTAAACAGAAGAATCCATTGAAAAAAAGAAAGGAACAAACAAGACCAAGCATATGATTATAAATGATGACTATTCATGTACGCATGCATCCACATGCTTATGCATTAGTTTAGTAATCGTTAGACCTACTCCTCGTATGTGCACATACCAGTTCCATTATCATTTAGCACTACAGATTTGGCATTGTAATTGAGAGATGCTAAACATACTTCTTAACCACTATGGTCATGAAATATTTGATGAAAAATGTTGCAGTCTGATACTGCGAACTTATTCTTGCACCGAATATTTCATCACGTTTCAGTTATAAAATCTAATTTTCTCTCCAGAACTCAATTTTGAATATATGATTGCTGCAGGTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTT-GCATGTACAAGTGATAACAT-GGAATTCTTCATGATCACACGTGCAA-A--A-CTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTGCCAAAATAATGTCTGGGTCCAGGTCAAA</genome_strand>
        <mrna_strand>TGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTTGTTTTGTTGTCTTGGACTGATGATCTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATACAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTGGCAGGTGGAAATATACATTGTATCACACAGCAGCAGCCAACCGGCCCAGAATAATCACCCAAGATTATAAAT--GATTCCATATCTTAGCAGATGGATAATAAGATTTGGCATTTGCAAGTGATAACATGGGAATTCTTCGCGATCACATGTTCAAGATGAGCTTTAGTTTGTGTATTTGCTTGTTCTTTCGAGATTCTGGAGTGCAAAAATAATGTCTGGATCCAGGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456386" ref_strand="+" ref_description="SGN-E456386 [cSTS-29-I24]">
      <seq>ctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaaatacttctgatgccagtggtagaaaaatacaagtgatcaaactccatgtacctgngccactctatatgacagatgangaagcagctggaatagttcaggatggtgaagctaaacctangccttcangtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattactccgcaatttggggataaaaaatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83733" stop="76416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83433" g_stop="83353" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="370" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="426" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79843" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="468" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79842" i_stop="77685" i_length="2158">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77684" g_stop="77577" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="576" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76829" g_stop="76716" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="690" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E456386" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83433" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79843"/>
          <exon e_start="77684" e_stop="77577"/>
          <exon e_start="76829" e_stop="76716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGAT</genome_strand>
        <mrna_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATACAAGTGATCAAACTCCATGTACCTGNGCCACTCTATATGACAGATGANGAAGCAGCTGGAATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAAGCTAAACCTANGCCTTCANGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426232" ref_strand="+" ref_description="SGN-E426232 [STM-46-A20]">
      <seq>ctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaaatacttctgatgccagtggtagaaaaatacaagtgatcaaactccatgtacctgggccactctatatgacagatgaggaagcagctgggatagttcaggatggtgaagctaaacctaggccttcaggtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattactccgcaatttggggataaaaaatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83733" stop="76416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83433" g_stop="83353" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="369" r_length="84" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="425" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79843" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="467" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79842" i_stop="77685" i_length="2158">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77684" g_stop="77577" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="575" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76829" g_stop="76716" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="689" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E426232" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83433" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79843"/>
          <exon e_start="77684" e_stop="77577"/>
          <exon e_start="76829" e_stop="76716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGAT</genome_strand>
        <mrna_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTC-ATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATACAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGGATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726895" ref_strand="+" ref_description="SGN-E726895 [LA13AE09]">
      <seq>ggagaaataatgcagtccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttgaaaatacttctgatgccagtggtagaaaaatagaagtgatcaaactccatgtacctgggccactctatatgacagatgaggaagcagctggaatagttcaggatggcgaagctaaacctangccttcaggtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="82008" stop="76443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81708" g_stop="81611" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="188" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="273" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="329" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="408" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="543" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77809" g_stop="77577" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="776" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76829" g_stop="76743" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="863" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E726895" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81708" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77577"/>
          <exon e_start="76829" e_stop="76743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACT</genome_strand>
        <mrna_strand>GGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGAAGCTAAACCTANGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321339" ref_strand="+" ref_description="SGN-E321339 [cTOB-23-P17]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttgaaatacttctgatgccagtggtagaaaaatagagtgatcaaactccatgtacctgggccactctatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="77306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="258" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="314" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="529" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77809" g_stop="77606" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="731" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E321339" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCAC-AACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGA</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTG-AAATACTTCTGATGCCAGTGGTAGAAAAATAG-AGTGATCAAACTCCATGTACCTGGGCCACTCTATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323084" ref_strand="+" ref_description="SGN-E323084 [cTOB-28-I24]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctccnaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttngaaatacttctgatgccagtggtagaaaaatagaagtgatcaaactccatgtacctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="77318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="257" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="313" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="392" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="527" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77809" g_stop="77618" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="719" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E323084" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGC</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTC-ATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCCNAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTNGAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320614" ref_strand="+" ref_description="SGN-E320614 [cTOB-22-H20]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttngacatacttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="77364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="258" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="314" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="528" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77809" g_stop="77664" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="674" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E320614" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGAT</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTNGACATACTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546397" ref_strand="+" ref_description="SGN-E546397 [TUS-69-L21]">
      <seq>ggcgagagagaagaagagggtagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgcagaatgggaaccccactctggttgttggatgggttggccggagcgtccagataactggagaaataatgcagtccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaatcgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatcttggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgacgatgtatctgatgaacagtatgaaagatccttttgagcactctctattcttgaaaaacttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83764" stop="77365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83464" g_stop="83353" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="226" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="316" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="401" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="457" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="536" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="671" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77665" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="815" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E546397" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83464" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGA</genome_strand>
        <mrna_strand>GGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATCGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTTGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGACGATGTATCTGATGAACAGTATGAAAGATCCTTTTGAGCACTCTCTATTCTTGAAAA-ACTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701235" ref_strand="+" ref_description="SGN-E701235 [FA15BF06]">
      <seq>gtcatgttcgcttgtgtttgttgtggtggtgctgctggcgagagagaagaagagggtagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgcagaatgggaaccccactctggttgttggatgggttggccggaacgtccagataactggagaaataatgcagtccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttgaaaatacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83800" stop="77366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83500" g_stop="83353" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="262" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="352" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="437" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="493" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="572" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="707" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77666" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="851" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E701235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83500" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTG</genome_strand>
        <mrna_strand>GTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402129" ref_strand="+" ref_description="SGN-E402129 [PPC-6-D23]">
      <seq>gtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaacagaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaggaacagattgagaatgaactaaaagcatatcttggagtcaggaagattatttggctgccctcgaggttgcttggtgatgangatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggnngtgntttgntgtcttggactgatgatctatctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83726" stop="77415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83426" g_stop="83353" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="188" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="278" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="363" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="419" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="498" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="633" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77715" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="728" r_length="95" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E402129" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83426" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTG-CCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAA</genome_strand>
        <mrna_strand>GTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACAGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAGGAACAGATTGAGAATGAACTAAAAGCATATCTTGGAGTCAGGAAGATTATTTGGCTGCCCTCGA-GGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGANGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGNNGTGNTTTGNTGTCTTGGACTGATGATCTATCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322989" ref_strand="+" ref_description="SGN-E322989 [cTOB-30-N1]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgangatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="77416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="258" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="314" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="528" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77809" g_stop="77716" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="622" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E322989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGA</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGANGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595392" ref_strand="+" ref_description="SGN-E595392 [38664]">
      <seq>ctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaacagaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaggaacagattgagaatgaactaaaagcatatcttggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggataccaatggtcatatcgacaacatgtgctgtcttgtgaaacctggtgtcgtaaagtagtcttggactgatgatctatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83733" stop="77419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83433" g_stop="83353" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="370" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="426" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="505" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="640" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77719" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="731" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E595392" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83433" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGA</genome_strand>
        <mrna_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACAGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAGGAACAGATTGAGAATGAACTAAAAGCATATCTTGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACCAATGGTCATATCGACAACATGTGCTGTCTTGTGAAACCTGGTGTCGTAAAGTAGTCTTGGACTGATGATCTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407365" ref_strand="+" ref_description="SGN-E407365 [PPI-6-H22]">
      <seq>aaacactgtatattaatgtttgcttgtgttagtgagagagaagaagaggttagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctaacannaaaaaaattgcctcctgaacaaaaacaggaatccccatttgtctaaggaacagattgagaatgaactaaaagcatatcttggagtcaggaagattatttggcttgcctcgaggttgcttggtgatgaagatacaaatggtcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83771" stop="77484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83458" g_stop="83353" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="142" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="256" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="346" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="431" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="487" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="566" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="702" r_length="136" r_score="0.896"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77784" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="728" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E407365" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83458" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAAC-CGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGC-TGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATC</genome_strand>
        <mrna_strand>AGAGAAGAAGAGGTTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTAACANNAAAAAAATTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAGGAACAGATTGAGAATGAACTAAAAGCATATCTTGGAGTCAGGAAGATTATTTGGCTTGCCTCGA-GGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAGATACAAATGGTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409422" ref_strand="+" ref_description="SGN-E409422 [PPI-14-C23]">
      <seq>cgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctccnaacagaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaggaacagattgagaatgaactanaagcatatcttggagtcaggaagattatttggctgcctcnaggggtgcttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83723" stop="78794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83423" g_stop="83353" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="185" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="275" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="415" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="494" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="629" r_length="135" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E409422" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83423" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG</genome_strand>
        <mrna_strand>CGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTC-ATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCCNAACAGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAGGAACAGATTGAGAATGAACTANAAGCATATCTTGGAGTCAGGAAGATTATTTGGCTGCCTCNAGGGGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568999" ref_strand="+" ref_description="SGN-E568999 [13369]">
      <seq>aagaagaggttagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaacagaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaggaacagattgagaatgaactaaaagcatatcttgggagtcaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83754" stop="78825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83454" g_stop="83353" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="216" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="306" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="391" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="447" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="526" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79125" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="633" r_length="107" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E568999" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83454" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATC-TCGGAGTCAGGAA</genome_strand>
        <mrna_strand>AAGAAGAGGTTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACAGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAGGAACAGATTGAGAATGAACTAAAAGCATATCTTGGGAGTCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321329" ref_strand="+" ref_description="SGN-E321329 [cTOB-23-L17]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcacnatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaatcatatcaaggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcacaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggtctgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgataatctcccaaagtttccacattctatggttcttgaatgtggaagcattcatgttgatggagaagggacttgtctgcccacctaaaagtgcctcctgaacaaaaacatgaatccccatttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="78873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="259" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="315" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="394" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79173" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="452" r_length="58" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E321329" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGT-TGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTC</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCACNATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAATCATATCAAGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCACAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTCTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGATAATCTCCCAAAGTTTCCACATTCTATGGTTCTTGAATGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTGCCCACCTAAAAGTGCCTCCTGAACAAAAACATGAATCCCCATTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444070" ref_strand="+" ref_description="SGN-E444070 [cSTA-41-C12]">
      <seq>gaagaagaggttagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccaaagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggttgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcaatctatgattcttgaaggtggaagcattcatgttgatggagaagggacttgtctcgcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83755" stop="79503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83455" g_stop="83353" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="217" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="307" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="392" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="448" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="527" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E444070" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83455" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG</genome_strand>
        <mrna_strand>GAAGAAGAGGTTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCAAAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGTTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAATCTATGATTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321454" ref_strand="+" ref_description="SGN-E321454 [cTOB-23-B7]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="79503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="258" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="314" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E321454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358980" ref_strand="+" ref_description="SGN-E358980 [cLHT-24-F10]">
      <seq>gcgagagagaagaagagggtagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgcagaatgggaaccccactctggttgttggatgggttggccggagcgtccagataactggagaaataatgcagtccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaatcgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83763" stop="79510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83463" g_stop="83353" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="225" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="315" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="400" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="456" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79810" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="531" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E358980" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83463" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGA</genome_strand>
        <mrna_strand>GCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATCGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320364" ref_strand="+" ref_description="SGN-E320364 [cTOB-22-A6]">
      <seq>tccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="81993" stop="79511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81693" g_stop="81611" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="258" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="314" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79884" g_stop="79811" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="388" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E320364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81693" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGG</genome_strand>
        <mrna_strand>TCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445486" ref_strand="+" ref_description="SGN-E445486 [cSTA-45-N9]">
      <seq>ctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccagataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccagtaacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcagggttgtggagatgagcatcaatgattcttggtttcgtgatactggtccaacttttgtcatcagaaataccacagcaaatgcagaacatgcagtgtcaagtgttgcagggattgattggaccttcaatagctggggtggtgttgatgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgaaaagctcccaaggtttccgcagtctatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83733" stop="79539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83433" g_stop="83353" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="370" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="426" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79839" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="472" r_length="46" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E445486" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83433" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTC</genome_strand>
        <mrna_strand>CTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCAGATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCAGGGTTGTGGAGATGAGCATCAATGATTCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTCATCAGAAATACCACAGCAAATGCAGAACATGCAGTGTCAAGTGTTGCAGGGATTGATTGGACCTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAAAAGCTCCCAAGGTTTCCGCAGTCTATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400099" ref_strand="+" ref_description="SGN-E400099 [cSTC-4-F22]">
      <seq>ggttagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgctgaatgggaaccccactcttgttgttggatgggttggccggagcgtccatataactggcgaaataatggagtccacggtcagcgtgtatttgcaactgtagcatctgctatttcaagatttgaaccaataacagtctgcgctagtgctgctcagtgggaaaatgcatgcagcttgttgcctaaacatatcatggttgtggagatgagcattaatgaatcttggtttcgtgatactggtccaacttttgttatcagaaatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-Xy91I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83747" stop="81101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83447" g_stop="83353" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.847" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="299" r_length="90" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81284" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="318" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-E400099" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83447" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCA</genome_strand>
        <mrna_strand>GGTTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCTGAATGGGAACCCCACTCTTGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCCATATAACTGGCGAAATAATGGAGTCCACGGTCAGCGTGTATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAACCAATAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCATGCAGCTTGTTGCCTAAACATATCATGGTTGTGGAGATGAGCATTAATGAATCTTGGTTTCGTGATACTGGTCCAACT....................................................................................................TTTGTTATCAGAAATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>42</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1719" PGL_stop="2143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1719" e_stop="2143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="1719" e_stop="2143" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1719" stop="2143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTATTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACAAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATTCAACTCTGTTAGTTCCTAATCAAAGATTGAGATGAATATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTCTTTTTTTCCTTTTTGGCTGCTGAAAAACTCTTTTTATATAT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  Y  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  *  F  L  I  K  D  *  D  E  Y  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  G  L  N  F  L  L  R  K  T  A  L  F  F  S  F  L  A  A  E  K  L  F  L  Y   </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  I  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  Q  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  F  N  S  V  S  S  *  S  K  I  E  M  N  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  F  Y  C  E  K  L  L  S  F  F  P  F  W  L  L  K  N  S  F  Y  I  </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  K  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  S  T  L  L  V  P  N  Q  R  L  R  *  I  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  R  A  E  F  F  T  A  K  N  C  S  L  F  F  L  F  G  C  *  K  T  L  F  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0128K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13081" PGL_stop="13844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13081" e_stop="13844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="13081" e_stop="13844" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13081" stop="13844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACGTTATCAACACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTTTCTCATAATTTCATTATGTCGAATTTTTCCAAACTTGAGTTTGTGGCATTAGATATTTCAGGAAAGAATTATCTTTCATGGGTACTCGATGCAGAGATTCACTTGACTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCTAGTCATGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATTTGACGGTAAAAAATCCACTTGAATTGTGGACTAGTTTAAGAGGGAGATATGACAACCTAAAGGCAACAGTATTGCCAAGATCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACTGTAATTGAATACAACTCTGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTAGGGAGGCTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCAAATGTGATATTGCAACAACAATATCGTGAAAAAGGTTTTTAGAAATATTCTGAACTAATCTCATGTCTTTTTGGTGGCTGAGCAACATAATTCTCTTTTAATGAAAAATCATGAAGATCGTCCCACTAGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGGAGAACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGTTATAATAATGCACGGGGACGTGCCAA</gDNA_template>
            <first_frame> N  T  L  S  T  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  F  L  I  I  S  L  C  R  I  F  P  N  L  S  L  W  H  *  I  F  Q  E  R  I  I  F  H  G  Y  S  M  Q  R  F  T  *  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  L  V  M  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  K  I  H  L  N  C  G  L  V  *  E  G  D  M  T  T  *  R  Q  Q  Y  C  Q  D  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  L  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  F  M  P  Q  M  *  Y  C  N  N  N  I  V  K  K  V  F  R  N  I  L  N  *  S  H  V  F  L  V  A  E  Q  H  N  S  L  L  M  K  N  H  E  D  R  P  T  R  A  A  P  L  P  E  A  N  V  V  G  E  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  A   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  N  S  H  I  F  S  *  F  H  Y  V  E  F  F  Q  T  *  V  C  G  I  R  Y  F  R  K  E  L  S  F  M  G  T  R  C  R  D  S  L  D  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  *  S  *  *  G  E  G  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  F  D  G  K  K  S  T  *  I  V  D  *  F  K  R  E  I  *  Q  P  K  G  N  S  I  A  K  I  S  L  *  V  D  A  F  T  V  S  R  F  *  D  C  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  *  G  G  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  S  C  L  K  C  D  I  A  T  T  I  S  *  K  R  F  L  E  I  F  *  T  N  L  M  S  F  W  W  L  S  N  I  I  L  F  *  *  K  I  M  K  I  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  E  N  V  I  N  L  K  *  K  E  M  I  I  G  V  I  I  M  H  G  D  V  P  </second_frame>
            <third_frame>   H  V  I  N  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  M  S  N  F  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  T  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  H  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  N  P  L  E  L  W  T  S  L  R  G  R  Y  D  N  L  K  A  T  V  L  P  R  S  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  V  V  F  R  I  T  S  Q  L  K  L  C  R  E  A  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  *  K  Y  S  E  L  I  S  C  L  F  G  G  *  A  T  *  F  S  F  N  E  K  S  *  R  S  S  H  *  S  C  S  I  T  G  G  K  C  G  G  R  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  C  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13083" stop="13655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVINTKLLLAKVLYKYFYLIHIFSHNFIMSNFSKLEFVALDISGKNYLSWVLDAEIHLTAKGLDATITQGNEASSHDKAKAMIFLRHHLDEGLKIEYLTVKNPLELWTSLRGRYDNLKATVLPRSRYEWMHLRFQDFKTVIEYNSVVFRITSQLKLCREAIKDEDMLEKTLTTFHASNVILQQQYREKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16242" PGL_stop="17969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16242" e_stop="17969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="16242" e_stop="17969" e_length="1728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16242" stop="16953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16819" stop="17457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16859" stop="17487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16859" stop="17435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16909" stop="17462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17074" stop="17838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17101" stop="17672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17406" stop="17804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17592" stop="17969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATAATGCAACAAGATGAAGATTTTGAGCTAAAATATGTTCACGAATGTAGACAGAGAAAAGATTGACCAAAATGGAAGGATGCAATTCAAGCTGAATTGACTTCACTAGAAAATCCTAAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACTAAAAAAGAAATGATAAAGTTGAAGTCATGAGATATAAGGACCTACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGAATTGATTAAATGGAGACATATTCTCGAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACATGAAATGTGTCTAATGGACATTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGACACATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACCTGTTCAATAAAGCTTCAGAAATCTCTTTATAGATTGAAACAATCAGGAAAGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAATGGTCGGGGTTTGAATTTGTTATAATAGCTGTGTATGTTGATGATTTGAACATTATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTTAAATGAAAGATCTTGGCAAGACAAAATTTTGTCCCAGCCAACAGATTAAGAGTTTGTCAAATGGAATACTTGTTCATTAATCAACATACACAAAAAAGATACTAAAGTGTTTTTACATGGATAACTCACATCCATTGAGTACTGCAATGGTGGTAAGATCGTTTGACATCAATATAGATCCATTTCAAACCTCAAGAGAATGATGAAAATCTTCTTGGTGATGGAACTCCTTATCTTAGTGCGGTCGGGGCACTAATGTACCTTGCTATCAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTGCTGGCAAGATTCAGCTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCCATATCTTCGAGGGACCATGGACATGGGTCTATTCTATTCCAATGAATCCAAGTCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCTTATCCACATAAAGATCGATCACAAACAGGCTATTTGCTTACATGTGGAGACATGGCAATATCTTGGCGATCAATGAAGCAAACTTTTGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCTATGAAGCAAATCGAGAGTGCATCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATATACGAAGATAAAGCAGCATGTATAACTCAATTGAAAGGAGGATACATCAAAGGAGATCAGACAAAGCATATCTCACCAAAGTTCATTTTCACGCATGATCTTCAACAAAATGGTGAAATAGAAGTTCAATAAATTCATTCAAGTGATAATCTTGCTGATTTACTCACTAAGGCATTTCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGGATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCGGGGGGGGGGATATGCGTATACTCTTTTCCTTAACTATGGTTTTGTACCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAC</gDNA_template>
            <first_frame> T  *  C  N  K  M  K  I  L  S  *  N  M  F  T  N  V  D  R  E  K  I  D  Q  N  G  R  M  Q  F  K  L  N  *  L  H  *  K  I  L  K  F  L  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  *  K  R  N  D  K  V  E  V  M  R  Y  K  D  L  L  V  A  Q  G  F  S  Q  R  P  G  I  D  *  M  E  T  Y  S  R  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  H  E  M  C  L  M  D  I  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  D  T  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  R  L  K  Q  S  G  K  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  W  S  G  F  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  K  E  F  *  M  K  D  L  G  K  T  K  F  C  P  S  Q  Q  I  K  S  L  S  N  G  I  L  V  H  *  S  T  Y  T  K  K  I  L  K  C  F  Y  M  D  N  S  H  P  L  S  T  A  M  V  V  R  S  F  D  I  N  I  D  P  F  Q  T  S  R  E  *  *  K  S  S  W  *  W  N  S  L  S  *  C  G  R  G  T  N  V  P  C  Y  Q  Y  S  T  R  Y  L  F  C  S  K  S  A  G  K  I  Q  L  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  S  I  L  F  Q  *  I  Q  V  R  T  D  W  L  R  R  C  K  V  F  I  L  S  T  *  R  S  I  T  N  R  L  F  A  Y  M  W  R  H  G  N  I  L  A  I  N  E  A  N  F  C  S  H  F  F  K  S  C  R  N  N  S  H  L  *  S  K  S  R  V  H  L  V  E  I  N  D  P  S  Y  S  G  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  I  R  R  *  S  S  M  Y  N  S  I  E  R  R  I  H  Q  R  R  S  D  K  A  Y  L  T  K  V  H  F  H  A  *  S  S  T  K  W  *  N  R  S  S  I  N  S  F  K  *  *  S  C  *  F  T  H  *  G  I  S  N  I  N  V  *  E  V  E  I  Q  D  W  D  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  G  I  C  V  Y  S  F  P  *  L  W  F  C  T  K  L  G  F  P  G  K  V  F  N </first_frame>
            <second_frame>  H  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  R  L  T  K  M  E  G  C  N  S  S  *  I  D  F  T  R  K  S  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  D  F  C  T  K  K  E  M  I  K  L  K  S  *  D  I  R  T  Y  S  L  L  K  V  F  L  K  D  L  E  L  I  K  W  R  H  I  L  E  W  *  M  Q  S  P  S  D  I  S  *  I  W  Q  F  M  K  N  M  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  T  H  S  K  C  L  K  H  T  K  I  Q  E  K  P  V  Q  *  S  F  R  N  L  F  I  D  *  N  N  Q  E  R  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  L  *  *  L  C  M  L  M  I  *  T  L  L  A  L  V  K  S  F  *  K  L  L  S  V  *  K  K  N  F  K  *  K  I  L  A  R  Q  N  F  V  P  A  N  R  L  R  V  C  Q  M  E  Y  L  F  I  N  Q  H  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  *  I  H  F  K  P  Q  E  N  D  E  N  L  L  G  D  G  T  P  Y  L  S  A  V  G  A  L  M  Y  L  A  I  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  P  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  R  Y  L  S  Y  P  H  K  D  R  S  Q  T  G  Y  L  L  T  C  G  D  M  A  I  S  W  R  S  M  K  Q  T  F  V  A  T  S  S  N  H  A  E  I  I  A  I  Y  E  A  N  R  E  C  I  W  L  R  S  M  T  H  H  I  Q  E  M  C  G  F  S  L  K  K  N  I  P  T  T  I  Y  E  D  K  A  A  C  I  T  Q  L  K  G  G  Y  I  K  G  D  Q  T  K  H  I  S  P  K  F  I  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  *  I  H  S  S  D  N  L  A  D  L  L  T  K  A  F  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  R  G  G  G  Y  A  Y  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  L  V  R  F  L   </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  L  K  Y  V  H  E  C  R  Q  R  K  D  *  P  K  W  K  D  A  I  Q  A  E  L  T  S  L  E  N  P  K  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  I  F  V  L  K  K  K  *  *  S  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  W  N  *  L  N  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  V  S  N  G  H  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  H  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  L  *  I  E  T  I  R  K  D  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  M  V  G  V  *  I  C  Y  N  S  C  V  C  *  *  F  E  H  Y  W  H  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  L  N  E  R  S  W  Q  D  K  I  L  S  Q  P  T  D  *  E  F  V  K  W  N  T  C  S  L  I  N  I  H  K  K  D  T  K  V  F  L  H  G  *  L  T  S  I  E  Y  C  N  G  G  K  I  V  *  H  Q  Y  R  S  I  S  N  L  K  R  M  M  K  I  F  L  V  M  E  L  L  I  L  V  R  S  G  H  *  C  T  L  L  S  I  L  D  Q  I  S  V  L  Q  *  V  C  W  Q  D  S  A  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  H  I  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  S  Q  N  *  L  V  T  Q  M  Q  G  I  Y  L  I  H  I  K  I  D  H  K  Q  A  I  C  L  H  V  E  T  W  Q  Y  L  G  D  Q  *  S  K  L  L  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  I  E  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  Y  T  K  I  K  Q  H  V  *  L  N  *  K  E  D  T  S  K  E  I  R  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  K  *  K  F  N  K  F  I  Q  V  I  I  L  L  I  Y  S  L  R  H  F  Q  H  Q  R  L  R  S  *  D  T  R  L  G  C  A  V  S  E  I  S  S  K  V  F  I  G  G  G  D  M  R  I  L  F  S  L  T  M  V  L  Y  Q  V  G  F  S  W  *  G  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17131" stop="17769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHFKPQENDENLLGDGTPYLSAVGALMYLAINTRPDICFAVSLLARFSSSPTKRHWNGVKHILPYLRGTMDMGLFYSNESKSELIGYADARYLSYPHKDRSQTGYLLTCGDMAISWRSMKQTFVATSSNHAEIIAIYEANRECIWLRSMTHHIQEMCGFSLKKNIPTTIYEDKAACITQLKGGYIKGDQTKHISPKFIFTHDLQQNGEIEVQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16518" stop="16955"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>METYSRVVDAITFRYLINLAVHEKHEMCLMDIVTAYLYGSLDHNIFMKIPDTFKVPEAYKDSRETCSIKLQKSLYRLKQSGKMWYNRLSEYLLKKGYKNDPICPCIFIKWSGFEFVIIAVYVDDLNIIGTRKELLEAVECLKKEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37282" PGL_stop="36167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37282" e_stop="36452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="37282" e_stop="36452" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37282" stop="36452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37282" stop="36712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37281" stop="36876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAGAAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAAATATAATGAAATTTCAAACGGGTCACACGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAATATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAATTAAAATAAATTTGTCCAATGAATTATCTTTCGATCG</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  S  I  I  S  L  R  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  E  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  P  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  N  *  P  H  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  S  T  A  G  K  Y  T  K  K  M  C  F  L  R  R  R  K  I  R  K  F  V  S  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  F  S  E  L  T  Q  P  L  M  K  G  Y  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  T  G  I  F  K  Y  N  E  I  S  N  G  S  H  A  R  I  R  V  G  S  G  *  L  K  S  *  K  Y  F  G  *  F  L  L  S  T  D  *  L  K  I  I  F  G  H  L  I  N  *  I  N  N  *  N  K  F  V  Q  *  I  I  F  R  S </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  Q  *  F  P  *  G  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  N  K  S  F  R  N  T  K  *  P  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  I  I  *  S  V  K  L  T  R  I  *  N  T  H  F  D  N  L  G  R  K  S  S  P  L  N  S  Q  Y  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  I  N  L  T  G  *  N  D  L  N  Q  *  S  I  D  I  K  N  S  T  V  S  E  S  I  P  Q  Q  E  S  T  R  R  K  C  V  F  *  E  E  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  N  H  *  *  K  V  T  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  *  R  E  Y  L  N  I  M  K  F  Q  T  G  H  T  R  G  S  E  S  G  R  V  N  *  K  V  E  N  I  S  V  N  F  C  Y  Q  L  I  N  *  K  *  F  L  A  I  *  L  I  K  *  I  I  K  I  N  L  S  N  E  L  S  F  D   </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  N  N  F  L  K  V  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  R  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  *  F  N  L  *  N  L  P  E  S  R  I  L  I  L  I  I  *  E  E  N  Q  V  H  *  I  H  S  T  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  K  L  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  S  K  T  L  L  S  A  N  Q  F  H  S  R  K  V  H  E  E  N  V  F  F  K  K  K  E  D  Q  K  I  R  *  *  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  N  L  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  D  G  N  I  *  I  *  *  N  F  K  R  V  T  R  A  D  P  S  R  V  G  L  T  K  K  L  K  I  F  R  L  I  S  V  I  N  *  L  I  E  N  N  F  W  P  F  N  *  L  N  K  *  L  K  *  I  C  P  M  N  Y  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0128K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37282" e_stop="36633"/>
            <exon e_start="36467" e_stop="36167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="37282" e_stop="36633" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36632" i_stop="36468" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="36467" e_stop="36167" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37282" stop="36712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37281" stop="36876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36892" stop="36633"/>
              <exon start="36467" stop="36167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36892" stop="36633"/>
              <exon start="36467" stop="36167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAGAAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAA : AATTATCTTTCGATCGATCATTTGGCAAAGCCAAAGCCAAAGCCGAAGCCAAAGCCGAAGCGAGCGAGCGACGACGACGGTGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCAATGAGGGACTATTACCTTTTCTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  S  I  I  S  L  R  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  E  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  P  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  N  *  P  H  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  S  T  A  G  K  Y  T  K  K  M  C  F  L  R  R  R  K  I  R  K  F  V  S  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  F  S  E  L  T  Q  P  L  M  K  G  Y  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  T  G  I  F  K :   I  I  F  R  S  I  I  W  Q  S  Q  S  Q  S  R  S  Q  S  R  S  E  R  A  T  T  T  V  R  G  G  S  L  F  P  T  L  L  I  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  Q  *  G  T  I  T  F  S  F  I  K  A  L  E  D  F  S  S  S  Q  P  F  K  F  *  T  F  Q  I  P  L  L  P  S  I  S  H  Q  F  L  L  H  T  Q  Q </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  Q  *  F  P  *  G  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  N  K  S  F  R  N  T  K  *  P  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  I  I  *  S  V  K  L  T  R  I  *  N  T  H  F  D  N  L  G  R  K  S  S  P  L  N  S  Q  Y  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  I  N  L  T  G  *  N  D  L  N  Q  *  S  I  D  I  K  N  S  T  V  S  E  S  I  P  Q  Q  E  S  T  R  R  K  C  V  F  *  E  E  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  N  H  *  *  K  V  T  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  *  R  E  Y  L   : K  L  S  F  D  R  S  F  G  K  A  K  A  K  A  E  A  K  A  E  A  S  E  R  R  R  R  C  E  G  G  P  S  F  Q  P  F  *  *  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  N  E  G  L  L  P  F  L  L  L  K  H  *  R  T  F  Q  V  P  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  P  I  N  S  C  Y  I  P  N   </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  N  N  F  L  K  V  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  R  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  *  F  N  L  *  N  L  P  E  S  R  I  L  I  L  I  I  *  E  E  N  Q  V  H  *  I  H  S  T  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  K  L  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  S  K  T  L  L  S  A  N  Q  F  H  S  R  K  V  H  E  E  N  V  F  F  K  K  K  E  D  Q  K  I  R  *  *  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  N  L  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  D  G  N  I  *  :  N  Y  L  S  I  D  H  L  A  K  P  K  P  K  P  K  P  K  P  K  R  A  S  D  D  D  G  A  R  G  V  P  L  S  N  P  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  Y  L  F  F  Y  *  S  I  R  G  L  F  K  F  P  T  F  Q  V  L  N  F  S  N  S  S  P  S  L  Y  F  P  S  I  L  A  T  Y  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36670" stop="36633"/>
                    <exon start="36467" stop="36296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQPFRTVTGIFKIIFRSIIWQSQSQSRSQSRSERATTTVRGGSLFPTLLIINRSVYLFKLSYFHFHYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37731" PGL_stop="38125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37731" e_stop="38125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="37731" e_stop="38125" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37731" stop="38125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37735" stop="38097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTGTTCTCCATGATCTGATTGTTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCCTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGTCGAAAAGAAGTCGTGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  V  L  H  D  L  I  V  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  F  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  P  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  V  E  K  K  S  C  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  F  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  S  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  C  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  S  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  R  K  E  V  V  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37731" stop="38123"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLVLHDLIVEDMVVNEAFQVAAMIEKFPPSWNDFKNYLKHKRKEMKPEDLVIRLKIEEDNRNVEKKSCKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83500" PGL_stop="75724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83500" e_stop="83353"/>
            <exon e_start="81724" e_stop="81611"/>
            <exon e_start="81492" e_stop="81403"/>
            <exon e_start="81302" e_stop="81218"/>
            <exon e_start="80039" e_stop="79984"/>
            <exon e_start="79884" e_stop="79806"/>
            <exon e_start="79230" e_stop="79096"/>
            <exon e_start="77809" e_stop="77577"/>
            <exon e_start="76829" e_stop="76671"/>
            <exon e_start="76125" e_stop="75724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.198" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.396" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.994"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83500" e_stop="83353" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.847">
            <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81724" e_stop="81611" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.198" acc_prob="0.938">
            <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81492" e_stop="81403" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81302" e_stop="81218" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.396" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80039" e_stop="79984" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.768">
            <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79884" e_stop="79806" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79230" e_stop="79096" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.923" acc_prob="0.994">
            <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77809" e_stop="77577" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747"/>
          </intron>
          <exon e_serial="9" e_score="0.994">
            <gDNA_exon_boundary e_start="76829" e_stop="76671" e_length="159"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="76125" e_stop="75724" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83500" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83464" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83463" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83458" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83455" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83454" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83447" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83433" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83433" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83426" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83423" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81708" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77577"/>
              <exon start="76829" stop="76743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81693" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77805" stop="77577"/>
              <exon start="76829" stop="76671"/>
              <exon start="76125" stop="75863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589497" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76768" stop="76671"/>
              <exon start="76125" stop="75724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG : GAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG : TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT : TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG : GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG : ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG : GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG : GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG : GATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG : GTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTACGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTTAACAA</gDNA_template>
            <first_frame> V  M  F  A  C  V  C  C  G  G  A  A  G  E  R  E  E  E  G  S  D  G  S  E  R  Y  A  G  *  K  W  I  P  Y  A  C  R  M  G  T  P  L  W  L  L  D  G  L  A   : G  T  S  R  *  L  E  K  *  C  S  P  R  S  A  C  I  C  N  C  S  I  C  Y  F  K  I  *  I  S  N  S  L  R  *  C  C  S   : V  G  K  C  T  Q  L  V  A  *  A  Y  Q  G  C  G  N  E  H  Q  *  F  L  V  S  *  H  W  S  N   : F  R  H  Q  K  Y  H  S  K  C  R  K  C  S  V  K  C  C  R  G  *  L  E  L  Q  *  L  G  W :   C  C  *  G  L  L  Q  R  L  E  S  *  P  S  C  C  K  K   : D  F  G  N  *  E  A  P  K  V  S  T  F  Y  G  S  *  R  W  K  H  S  C  *  W  R  R :   D  L  S  H  N  R  R  V  P  P  E  Q  K  Q  E  S  P  F  V  *  R  T  D  *  E  *  T  K  S  I  S  R  S  Q  E  D  Y  L  A  A  S  R  V  A  W :   *  *  G  Y  K  W  S  Y  R  Q  H  V  L  F  C  E  T  W  C  R  F  V  V  L  D  *  *  C  I  *  *  T  V  *  K  I  L  *  S  T  L  Y  S  *  K  Y  F  *  C  Q  W  *  K  N  R  S  D  Q  T  P  C  T  W  A  T  L  Y  D  R  *  G  S  S  W  N  S  S   : G  W  R  S  *  T  *  A  F  R  Y  K  A  C  C  F  L  C  K  L  L  H  C  *  W  C  N  Y  Y  S  A  I  W  G  *  K  M  G  *  R  S  Y  *  S  P  L  T  G  I  S  K  S  *   : G  C  R  N  *  R  C  *  G  N  C  T  S  R  W  K  Y  T  L  Y  H  T  T  A  A  N  R  P  R  I  I  T  Q  G  *  K  W  D  S  M  S  *  Q  R  D  N  K  I  C  M  Y  K  *  *  H  G  I  L  H  D  H  T  C  K  T  L  V  S  V  F  A  S  S  F  E  I  L  E  C  Q  N  N  V  W  V  Q  V  K  V  R  F  F  G  *  S  F  R  F  Q  *  Y  Y  V  *  S  N  L  Y  S  G  F  Y  L  R  S  L  V  H  F  Y  T  M  K  *  T  S  C  M  C  K  C  F  L  T  </first_frame>
            <second_frame>  S  C  S  L  V  F  V  V  V  V  L  L  A  R  E  K  K  R  V  V  M  D  L  K  G  T  P  V  E  N  G  Y  R  M  P  A  E  W  E  P  H  S  G  C  W  M  G  W  P  :  E  R  P  D  N  W  R  N  N  A  V  H  G  Q  R  A  F  A  T  V  A  S  A  I  S  R  F  E  S  V  T  V  C  A  S  A  A  Q  :  W  E  N  A  R  S  L  L  P  K  H  I  R  V  V  E  M  S  I  N  D  S  W  F  R  D  T  G  P  T  :  F  V  I  R  N  T  T  A  N  A  E  N  A  V  S  S  V  A  G  V  D  W  N  F  N  S  W  G   : G  V  V  E  G  C  Y  K  D  W  N  L  D  L  L  V  A  R  K  :  I  L  A  I  E  K  L  P  K  F  P  H  S  M  V  L  E  G  G  S  I  H  V  D  G  E   : G  T  C  L  T  T  E  E  C  L  L  N  K  N  R  N  P  H  L  S  K  E  Q  I  E  N  E  L  K  A  Y  L  G  V  R  K  I  I  W  L  P  R  G  L  L   : G  D  E  D  T  N  G  H  I  D  N  M  C  C  F  V  K  P  G  V  V  L  L  S  W  T  D  D  V  S  D  E  Q  Y  E  R  S  F  E  A  L  S  I  L  E  N  T  S  D  A  S  G  R  K  I  E  V  I  K  L  H  V  P  G  P  L  Y  M  T  D  E  E  A  A  G  I  V  Q  :  D  G  E  A  K  P  R  P  S  G  T  R  L  A  A  S  Y  V  N  F  Y  I  A  N  G  A  I  I  T  P  Q  F  G  D  K  K  W  D  E  E  A  I  R  V  L  S  L  A  F  P  N  H  E  :  V  V  G  I  E  G  A  R  E  I  V  L  A  G  G  N  I  H  C  I  T  Q  Q  Q  P  T  G  P  E  *  L  P  K  V  R  N  G  I  P  C  L  S  R  G  I  T  R  F  A  C  T  S  D  N  M  E  F  F  M  I  T  R  A  K  L  *  F  L  Y  L  L  L  R  S  K  F  W  S  A  K  I  M  S  G  S  R  S  K  *  D  F  L  V  K  A  L  D  F  N  S  I  T  F  D  Q  T  C  I  Q  A  S  I  Y  A  P  W  F  I  F  T  P  *  N  E  R  V  A  C  A  N  V  S  *  Q </second_frame>
            <third_frame>   H  V  R  L  C  L  L  W  W  C  C  W  R  E  R  R  R  G  *  *  W  I  *  K  V  R  R  L  K  M  D  T  V  C  L  Q  N  G  N  P  T  L  V  V  G  W  V  G  R :   N  V  Q  I  T  G  E  I  M  Q  S  T  V  S  V  H  L  Q  L  *  H  L  L  F  Q  D  L  N  Q  *  Q  S  A  L  V  L  L  S :   G  K  M  H  A  A  C  C  L  S  I  S  G  L  W  K  *  A  S  M  I  L  G  F  V  T  L  V  Q  L :   S  S  S  E  I  P  Q  Q  M  Q  K  M  Q  C  Q  V  L  Q  G  L  I  G  T  S  I  A  G  V  :  V  L  L  R  A  V  T  K  T  G  I  L  T  F  L  L  Q  E  R :   F  W  Q  L  R  S  S  Q  S  F  H  I  L  W  F  L  K  V  E  A  F  M  L  M  E  K  :  G  L  V  S  Q  P  K  S  A  S  *  T  K  T  G  I  P  I  C  L  K  N  R  L  R  M  N  *  K  H  I  S  E  S  G  R  L  F  G  C  L  E  G  C  L  :  V  M  R  I  Q  M  V  I  S  T  T  C  A  V  L  *  N  L  V  S  F  C  C  L  G  L  M  M  Y  L  M  N  S  M  K  D  P  L  K  H  S  L  F  L  K  I  L  L  M  P  V  V  E  K  *  K  *  S  N  S  M  Y  L  G  H  S  I  *  Q  M  R  K  Q  L  E  *  F  R :   M  A  K  L  N  L  G  L  Q  V  Q  G  L  L  L  L  M  *  T  S  T  L  L  M  V  Q  L  L  L  R  N  L  G  I  K  N  G  M  K  K  L  L  E  S  S  H  W  H  F  Q  I  M  R :   L  *  E  L  K  V  L  G  K  L  Y  *  Q  V  E  I  Y  I  V  S  H  N  S  S  Q  P  A  Q  N  N  Y  P  R  L  E  M  G  F  H  V  L  A  E  G  *  Q  D  L  H  V  Q  V  I  T  W  N  S  S  *  S  H  V  Q  N  F  S  F  C  I  C  F  F  V  R  N  S  G  V  P  K  *  C  L  G  P  G  Q  S  K  I  F  W  L  K  L  *  I  S  I  V  L  R  L  I  K  L  V  F  R  L  L  S  T  L  P  G  S  F  L  H  H  E  M  N  E  L  H  V  Q  M  F  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83499" stop="83353"/>
                    <exon start="81724" stop="81611"/>
                    <exon start="81492" stop="81403"/>
                    <exon start="81302" stop="81218"/>
                    <exon start="80039" stop="79984"/>
                    <exon start="79884" stop="79806"/>
                    <exon start="79230" stop="79096"/>
                    <exon start="77809" stop="77577"/>
                    <exon start="76829" stop="76671"/>
                    <exon start="76125" stop="76036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCSLVFVVVVLLAREKKRVVMDLKGTPVENGYRMPAEWEPHSGCWMGWPERPDNWRNNAVHGQRAFATVASAISRFESVTVCASAAQWENARSLLPKHIRVVEMSINDSWFRDTGPTFVIRNTTANAENAVSSVAGVDWNFNSWGGVVEGCYKDWNLDLLVARKILAIEKLPKFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKEQIENELKAYLGVRKIIWLPRGLLGDEDTNGHIDNMCCFVKPGVVLLSWTDDVSDEQYERSFEALSILENTSDASGRKIEVIKLHVPGPLYMTDEEAAGIVQDGEAKPRPSGTRLAASYVNFYIANGAIITPQFGDKKWDEEAIRVLSLAFPNHEVVGIEGAREIVLAGGNIHCITQQQPTGPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83447" e_stop="83353"/>
            <exon e_start="81724" e_stop="81611"/>
            <exon e_start="81492" e_stop="81403"/>
            <exon e_start="81302" e_stop="81218"/>
            <exon e_start="80039" e_stop="79984"/>
            <exon e_start="79884" e_stop="79843"/>
            <exon e_start="77684" e_stop="77577"/>
            <exon e_start="76829" e_stop="76671"/>
            <exon e_start="76125" e_stop="75724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.847" e_score="0.975"/>
          <exon-intron don_prob="0.198" acc_prob="0.938" e_score="0.956"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="0.956"/>
          <exon-intron don_prob="0.396" acc_prob="0.997" e_score="0.953"/>
          <exon-intron don_prob="0.986" acc_prob="0.768" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.905"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="83447" e_stop="83353" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.847">
            <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="81724" e_stop="81611" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.198" acc_prob="0.938">
            <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="81492" e_stop="81403" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="81302" e_stop="81218" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.396" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="80039" e_stop="79984" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.768">
            <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.905">
            <gDNA_exon_boundary e_start="79884" e_stop="79843" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79842" i_stop="77685" i_length="2158"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="77684" e_stop="77577" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="76829" e_stop="76671" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="76125" e_stop="75724" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83447" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83433" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79843"/>
              <exon start="77684" stop="77577"/>
              <exon start="76829" stop="76716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83433" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79843"/>
              <exon start="77684" stop="77577"/>
              <exon start="76829" stop="76716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81256" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79843"/>
              <exon start="77684" stop="77577"/>
              <exon start="76829" stop="76671"/>
              <exon start="76125" stop="75831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426233" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76768" stop="76671"/>
              <exon start="76125" stop="75724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG : GAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG : TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT : TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG : GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG : ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATG : ATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG : GATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG : GTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTACGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTTAACAA</gDNA_template>
            <first_frame> G  *  *  W  I  *  K  V  R  R  L  K  M  D  T  V  C  L  Q  N  G  N  P  T  L  V  V  G  W  V  G  R :   N  V  Q  I  T  G  E  I  M  Q  S  T  V  S  V  H  L  Q  L  *  H  L  L  F  Q  D  L  N  Q  *  Q  S  A  L  V  L  L  S :   G  K  M  H  A  A  C  C  L  S  I  S  G  L  W  K  *  A  S  M  I  L  G  F  V  T  L  V  Q  L :   S  S  S  E  I  P  Q  Q  M  Q  K  M  Q  C  Q  V  L  Q  G  L  I  G  T  S  I  A  G  V  :  V  L  L  R  A  V  T  K  T  G  I  L  T  F  L  L  Q  E  R :   F  W  Q  L  R  S  S  Q  S  F  H  I  L  * :   F  L  K  I  L  L  M  P  V  V  E  K  *  K  *  S  N  S  M  Y  L  G  H  S  I  *  Q  M  R  K  Q  L  E  *  F  R :   M  A  K  L  N  L  G  L  Q  V  Q  G  L  L  L  L  M  *  T  S  T  L  L  M  V  Q  L  L  L  R  N  L  G  I  K  N  G  M  K  K  L  L  E  S  S  H  W  H  F  Q  I  M  R :   L  *  E  L  K  V  L  G  K  L  Y  *  Q  V  E  I  Y  I  V  S  H  N  S  S  Q  P  A  Q  N  N  Y  P  R  L  E  M  G  F  H  V  L  A  E  G  *  Q  D  L  H  V  Q  V  I  T  W  N  S  S  *  S  H  V  Q  N  F  S  F  C  I  C  F  F  V  R  N  S  G  V  P  K  *  C  L  G  P  G  Q  S  K  I  F  W  L  K  L  *  I  S  I  V  L  R  L  I  K  L  V  F  R  L  L  S  T  L  P  G  S  F  L  H  H  E  M  N  E  L  H  V  Q  M  F  L  N   </first_frame>
            <second_frame>  G  S  D  G  S  E  R  Y  A  G  *  K  W  I  P  Y  A  C  R  M  G  T  P  L  W  L  L  D  G  L  A   : G  T  S  R  *  L  E  K  *  C  S  P  R  S  A  C  I  C  N  C  S  I  C  Y  F  K  I  *  I  S  N  S  L  R  *  C  C  S   : V  G  K  C  T  Q  L  V  A  *  A  Y  Q  G  C  G  N  E  H  Q  *  F  L  V  S  *  H  W  S  N   : F  R  H  Q  K  Y  H  S  K  C  R  K  C  S  V  K  C  C  R  G  *  L  E  L  Q  *  L  G  W :   C  C  *  G  L  L  Q  R  L  E  S  *  P  S  C  C  K  K   : D  F  G  N  *  E  A  P  K  V  S  T  F  Y   : D  S  *  K  Y  F  *  C  Q  W  *  K  N  R  S  D  Q  T  P  C  T  W  A  T  L  Y  D  R  *  G  S  S  W  N  S  S   : G  W  R  S  *  T  *  A  F  R  Y  K  A  C  C  F  L  C  K  L  L  H  C  *  W  C  N  Y  Y  S  A  I  W  G  *  K  M  G  *  R  S  Y  *  S  P  L  T  G  I  S  K  S  *   : G  C  R  N  *  R  C  *  G  N  C  T  S  R  W  K  Y  T  L  Y  H  T  T  A  A  N  R  P  R  I  I  T  Q  G  *  K  W  D  S  M  S  *  Q  R  D  N  K  I  C  M  Y  K  *  *  H  G  I  L  H  D  H  T  C  K  T  L  V  S  V  F  A  S  S  F  E  I  L  E  C  Q  N  N  V  W  V  Q  V  K  V  R  F  F  G  *  S  F  R  F  Q  *  Y  Y  V  *  S  N  L  Y  S  G  F  Y  L  R  S  L  V  H  F  Y  T  M  K  *  T  S  C  M  C  K  C  F  L  T  </second_frame>
            <third_frame>   V  V  M  D  L  K  G  T  P  V  E  N  G  Y  R  M  P  A  E  W  E  P  H  S  G  C  W  M  G  W  P  :  E  R  P  D  N  W  R  N  N  A  V  H  G  Q  R  A  F  A  T  V  A  S  A  I  S  R  F  E  S  V  T  V  C  A  S  A  A  Q  :  W  E  N  A  R  S  L  L  P  K  H  I  R  V  V  E  M  S  I  N  D  S  W  F  R  D  T  G  P  T  :  F  V  I  R  N  T  T  A  N  A  E  N  A  V  S  S  V  A  G  V  D  W  N  F  N  S  W  G   : G  V  V  E  G  C  Y  K  D  W  N  L  D  L  L  V  A  R  K  :  I  L  A  I  E  K  L  P  K  F  P  H  S  M  :  I  L  E  N  T  S  D  A  S  G  R  K  I  E  V  I  K  L  H  V  P  G  P  L  Y  M  T  D  E  E  A  A  G  I  V  Q  :  D  G  E  A  K  P  R  P  S  G  T  R  L  A  A  S  Y  V  N  F  Y  I  A  N  G  A  I  I  T  P  Q  F  G  D  K  K  W  D  E  E  A  I  R  V  L  S  L  A  F  P  N  H  E  :  V  V  G  I  E  G  A  R  E  I  V  L  A  G  G  N  I  H  C  I  T  Q  Q  Q  P  T  G  P  E  *  L  P  K  V  R  N  G  I  P  C  L  S  R  G  I  T  R  F  A  C  T  S  D  N  M  E  F  F  M  I  T  R  A  K  L  *  F  L  Y  L  L  L  R  S  K  F  W  S  A  K  I  M  S  G  S  R  S  K  *  D  F  L  V  K  A  L  D  F  N  S  I  T  F  D  Q  T  C  I  Q  A  S  I  Y  A  P  W  F  I  F  T  P  *  N  E  R  V  A  C  A  N  V  S  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83445" stop="83353"/>
                    <exon start="81724" stop="81611"/>
                    <exon start="81492" stop="81403"/>
                    <exon start="81302" stop="81218"/>
                    <exon start="80039" stop="79984"/>
                    <exon start="79884" stop="79843"/>
                    <exon start="77684" stop="77577"/>
                    <exon start="76829" stop="76671"/>
                    <exon start="76125" stop="76036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVMDLKGTPVENGYRMPAEWEPHSGCWMGWPERPDNWRNNAVHGQRAFATVASAISRFESVTVCASAAQWENARSLLPKHIRVVEMSINDSWFRDTGPTFVIRNTTANAENAVSSVAGVDWNFNSWGGVVEGCYKDWNLDLLVARKILAIEKLPKFPHSMILENTSDASGRKIEVIKLHVPGPLYMTDEEAAGIVQDGEAKPRPSGTRLAASYVNFYIANGAIITPQFGDKKWDEEAIRVLSLAFPNHEVVGIEGAREIVLAGGNIHCITQQQPTGPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 329 chains have been computed
$ 
$ memory statistics:
$ 115472 bytes spliced alignments in total
$ 42 spliced alignments have been stored
$ 2749 bytes was the average size of a spliced alignment
$ 12352 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2058 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 368 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:47:05
-->
