<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-30 17:14:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLEF-57-H10" ref_strand="+" ref_description="cLEF-57-H10">
      <seq>tttctctctatctgttttttctatgtcctcctgtaaccagtctcgagctctgggaatgattcgctctcatgttctttccgttcttagaagtacttcttctcaggtccaggctgcaatacgaagcagtggtggtagcaaaacatcttttgccgagggtatagagtcatctataatatatgtacgcttcaaggctgcagcaaatgagcttaagcctatcttggaggaaattgaaagtagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgtgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttccaggaaagaagcactgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctagagcatcaacttttcaatcacttcttcccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacattgcgtcctaaacttattcacgaaacaaatctggatgttctttgtgaactggttgatatccttaaagttgaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="33846" stop="38819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34146" g_stop="34248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34346" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="205" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="310" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="403" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="492" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38421" g_stop="38519" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="591" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="cLEF-57-H10" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="cLEF-57-H10" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34146" e_stop="34248"/>
          <exon e_start="34346" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
          <exon e_start="38421" e_stop="38519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAGGTAAATCTGCTTTATGCTTCACTGCTATATGCACCACAATCTTTGACTTGCAGATGAATGGTTGTATCTTCTGAGATAAATGTACCTATTTCATCAGGTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCT</genome_strand>
        <mrna_strand>TTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG.................................................................................................GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="34146" PGL_stop="38519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34146" e_stop="34248"/>
            <exon e_start="34346" e_stop="34447"/>
            <exon e_start="34600" e_stop="34704"/>
            <exon e_start="34882" e_stop="34974"/>
            <exon e_start="35497" e_stop="35585"/>
            <exon e_start="38421" e_stop="38519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.415" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.659" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34146" e_stop="34248" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34346" e_stop="34447" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.415">
            <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34600" e_stop="34704" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34882" e_stop="34974" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.910">
            <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35497" e_stop="35585" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.659">
            <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38421" e_stop="38519" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34146" stop="34248"/>
              <exon start="34346" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLEF-57-H10" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG : GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCT</gDNA_template>
            <first_frame> F  L  S  I  C  F  F  Y  V  L  L  *  P  V  S  S  S  G  N  D  S  L  S  C  S  F  R  S  *  K  Y  F  F  S   : G  P  G  C  N  T  K  Q  W  W  *  Q  N  I  F  C  R  G  Y  R  V  I  Y  N  I  C  T  L  Q  G  C  S  K  *   : A  *  A  Y  L  G  G  N  *  K  *  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  *  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  Q  E  R  S  T  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  R  A  S  T  F  Q  S  L  L  P  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  S  G  C  S  L  *  T  G  *  Y  P  *  S  *  S  S </first_frame>
            <second_frame>  F  S  L  S  V  F  S  M  S  S  C  N  Q  S  R  A  L  G  M  I  R  S  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  S  K  T  S  F  A  E  G  I  E  S  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  L  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  D  I  L  K  V  E  V   </second_frame>
            <third_frame>   S  L  Y  L  F  F  L  C  P  P  V  T  S  L  E  L  W  E  *  F  A  L  M  F  F  P  F  L  E  V  L  L  L  R :   S  R  L  Q  Y  E  A  V  V  V  A  K  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  A  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  V  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  V  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  P  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  *  S  I  N  F  S  I  T  S  S  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  C  V  L  N  L  F  T  K  Q  I  W  M  F  F  V  N  W  L  I  S  L  K  L  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34147" stop="34248"/>
                    <exon start="34346" stop="34447"/>
                    <exon start="34600" stop="34704"/>
                    <exon start="34882" stop="34974"/>
                    <exon start="35497" stop="35585"/>
                    <exon start="38421" stop="38517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLSVFSMSSCNQSRALGMIRSHVLSVLRSTSSQVQAAIRSSGGSKTSFAEGIESSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTLRPKLIHETNLDVLCELVDILKVEV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 122 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5688 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5688 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 123 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-30 17:14:35
-->
