<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-30 17:13:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598515" ref_strand="+" ref_description="SGN-U598515 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagatattgtacatacttcaaaggcatggtgctaaagtgttattggaggtaggactatggaagcgcggaatcattgaacacacaaaatctgcttcatgcaaacagtgcttattcaatccataaaaatatgcctctcccatgggacaagaaattgatcaggtctggtttatcatcactctaatgattccttcagtggcacagctctggattacatctataatgatggttatagaacctagctgctcttgacaaccattccgtggtagtatagaatgccaacgagctccgcctgaacgtggcgcataggtgattctttgatttcattctgccataggaagttcatcatttgatggcagatgtaatatagctttccttatttaacttgagctagcttgcagtggggagggaggtagaactagcctttttgttaaaaagtaaaaattattttgctcccttctactccatgagttctcaaactggattttggttctgtggatgtttctcttatatttataatatataatatgatatacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="3228" stop="4365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3528" g_stop="4065" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U598515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3528" e_stop="4065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATT</genome_strand>
        <mrna_strand>AAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601038" ref_strand="+" ref_description="SGN-U601038 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345889|emb|CAO15404.1| (e_value=1e-60) unnamed; (*ATH) AT1G50260.1 (e_value=2e-56) | Symbol: None | C2 domain-containing protein, low similarity to CLB1 (Lycopersicon esculentum) GI:2789434; contains Pfam profile PF00168: C2 domain | chr1:18621261-18625358 REVERSE | Aliases: F14I3.13, F14I3_13; ">
      <seq>gccagtcggtgttcggaactttttcattgatggttaactttggggcaaattgcgtttaatacagacggagccttggattggagctgtttcttgggcttttgtctcccttcccaacataaaacttgacttgtcaccgttccgcttgttcaacctaatggcaatatcctgttctatcaatgttgctgaagaagcttcttactgaggatttacctcgtctctttgtccgtccaaaaaaaattgtgttggattttcataaagggaaaacagtcgggcctattacaagtgatcgtaagtctggtcagagcgaacaacctaaggctggggaaatgctagaaggaaataaggactatgctggagaactatcagtgactcttgttgatgcaaggaatctctcttatatcatctatggaaaaactgatccatatgttaatctaagacttggagatcaagttatacgcatcaagagaaacagccaaactactgttattggacctcctgtagagcctatattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="13449" stop="8853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13149" g_stop="12992" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12991" i_stop="11431" i_length="1561">
            <donor d_prob="0.774" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11430" g_stop="11412" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="178" r_length="20" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11411" i_stop="10709" i_length="703">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10708" g_stop="10479" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="408" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10478" i_stop="9259" i_length="1220">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9258" g_stop="9153" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="514" r_length="106" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-U601038" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13149" e_stop="12992"/>
          <exon e_start="11430" e_stop="11412"/>
          <exon e_start="10708" e_stop="10479"/>
          <exon e_start="9258" e_stop="9153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTCGGTGTTCGGAACTTTGACATTGATGGTGAACTTTGGGTCAAATTACGTTTAATACAAACAGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAAGATAAAACTTGACTTGTCACCGTTCCGTTTGTTCAACCTAATGGGTATGTGAATTTCGACTTGGGACTTTTACCTACGAGATGAATCATGTGTCAGAATCTTGCATGCTATAAGTTTTATATAGGCAAAATACCAAATACATGAGAAGTAAATTATAGTCATATTAGTATGTTACTTGAAGCCCAATATTTCTTAATGAGTCTCTTAGTCCCCTCAAATATTCATATGCTAGTAGAAAATACAGAGAATTTCTTGTGCTTTTTTGTTGTGATTTTTCTGAATTTTATTTGAAAGATAATGGACTAAGATGAGCGTAAAAGAACAGCGAATTCATATAACTTGCTTGGGATTGAGTCGTAATAGTTGTTGAGTGCCCAGCTGATTCACACACTAAACACTGTTTTAAAGTTGCTTTCTTTTGATAAGAGACTGTTTCGAAGCTGATTTATTCATGATTTATATATCTGTTTACACCCAACTGTTGTGTTCAATTTGTTTCTTCTGGAAGAAAATAGCTTTTGATTCCGTTGAGTGCTCAATTCTTAGAAAAGAGTAGGAGCCCATTTGGATTGGCTTATAAAAAGTAACTTTCAAGTCAAAAATAAAAAGTCAAACTTAAATAACTTTTAAGTCGATATTACTAATCCAATGCAGAAAGTAAAAGAAAACTGCATTAATACTATGTATCTTTGGTGTAAAGAAGAGGGTATAGATGAGGTAGAACAGCCAGTAGACTTCTCAGATTATCTGTAATTATGATTACTTGCACTGTAATTTTTTTGATGGTTGTCAGCATACTGAGGAATACAACTTTACCTTTCTAAAAAAAAATAAAAATTTTAAGTCGAAAATAAAAAGTAGGGGGAAGCCTACTTTTGGTTTTTAACTTATTTTAAGTCATTTCTAACTTATTTTCATTTATTTTTAACCTTGCCAAAAACTTCCGAACTTATTTTAAGTTATTTTTATATTTGTACATTTCCTTAAGTCAGAAACTGATTTAAAAGTAGATTTGCCCAACTTTTAAGCCAATGCAAACACCCTGTTAATCATGGGTCGTCAAATTTTGATCACTGGAACATATTCTGTAAGACAGTGGAATGACTCCATAGAGTTTATTCTTTTCAAGAATGAACTTCATGGAGTTTATTCTTATCGGGTACTTCAATGTAATTTTAGGAACCTAATTCAAGTCGTTAGCAACTATTTGGCGTACTGTGAAGACTACGAAACATATTTGCTTTCTTCTTTATCTTGTTTTCTTTGCTGCTCTGTGTAATCCTCTTTGTGGTATCAGCTTCCAAGACTAGCATTCTTCTGCCATTAAACCTAATTTTAGGATTAGTTAATACCCCGCTTCTTCTAGTTGAGTTGCTGTGTAGTGAGATCTTTCCAGTGCATAGTTATCAATTATTTATTACTACTGATGCTGAGTTGTCATCATTTCAATGACTGCTGTTTGTTTTCTATTTACACTTTTTAAAATGGGATAGTGATACCTAAAGTTAAACGAATAAACTAGATGAGTAATATTATTGATGTGCCCATTATGAGGATCTTGACATGTTTCTTTTCTTTTTCTTGCATGTATTGGGGAAACACCAGCAAT-TCCTGTTCTATCAATGTAAGTACTATTTTATCCATTATCTGCTGTTCTTATTACCTATGTGCTTTCCACTTCTGTTTGTTATCCCCCATCGTTGGTATATCCAATTTCTTGTGCTGTTTAATTAGCATCTCATTGAAGAGTCCCTTTTCTTGTTTTTTCCTTTGGGTGATGGGTGGGTTGGGGGGTGAAGTGTGACTGATCACTGAATAATGCTTTACCAGGCCACTTACACTCCTAGCTTATGCAGTCAAATATCCTTTTTCTGTTTTAAAGCCCCTTTTGCTTTTCAGTAGATATGGTCATGGTATTGTCATCAATCATGAATGATTTTTCTTGAGAATCTTCCTTATTCACCTTATTCTGGATTTCTGAAGTTGCTTCTAGTTAGGCACCTCGTGTTATGTATTCCGAGGATGTTCACTCTCTCTCTATCTCTGCCCATTTTCTTCCCTAATTTTGGGAAATCTCTTGTCTTGTGTCAAGTCTCTTATTTTCAGCTCAAGTTAGTTTCATTTACATGCTCTACAATAATGGCTGCATTTGGTGTTTTAGCACATATCATCTTTAAAGTTAATTCCAGGCCTAGATCTTTCTAGCATCATATTAATTCTGAATTTCTTGCCTGATGCGTTTTCGATTTGCAGTACTCTATGGAACTATTTCATTTTTCCACTGCAGTGGTGGGTTTGAGTTCTTATATCTTCTACGGATATTTCAGGTTTTTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCAGAAAGGGAAAACAGTCGGGCCTATTCCAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCAAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATGGTATGAATATGTTCATCTTTCATCAGTGGCATCAATCTTTTTCTTAGGTCTGATATTTTGCTTTTTAGTAACACTAGAAACTTGGCATCAATCTTTTTCTTAGGTCCGATATTTGCCTTTTAGTAACACTAGAGACTTGTCATGCACTATGAACTATTAAATGAGTTCGTCTCTTCATATTATTTAAAAGTTAAAACTATTCTGTAGCATATTCTAGTTTGTGAAAGAAAAAGGTCAGAGGTATTTATTTACTTGAAAATCAGTTGAAGCTTCAAAAGAATGTGTTTTCCATTGCATGAGCAACTACTTTTAAGTGAATATAAAATCCACATATATTGGTCCAGTAATCACTGTGAACCAGTTAAAATATAATAATTACTGGATGAAATCACTGGGGCAGCCCGGTGCACAAAGCGTCCTCCATTAATATATTCAGTGAAGGGACGCACCCTAAGATTACCGAATCAAAATCACAGATATAGGAAAACCGTACCAAATGAAATCACATTATAAAGGAGGAAATGCGAAGACTTTCGACTATGCTTTCTAACAAATACAACGACGACAACAACCTACCCAGTGTAAAACCAGAAGTGGGGTCTGGGGAGAGTAATATGTACACACACCTCCCCCTGCGTTTGTAGGGTAGAGAGGTTGTTTCAGATGGACACTCGGCTCAAAAGCGAAGTTATTCGGAGAAGGGGTGCCAGAAAAAATTACAGCAAAATATCAAGGTACAAAGTAAAATGAAGCAACAGAATAAAGAAAACACATTGAAGAATAAGAGATTACACGAATTACTAAATACACATTAAAGATGTTTAGATCAGGTTATCACATCAAACTGTAATTGGGAAAAGAAAACTTTTTGGCACAAGGATCTTATTTTTTCTTTTTAGTTTGTGTGTGTCGTAAATGTCATAGTTAATAAAAGCTAAAAGGGAAGAAATAAGTTGCCTATGAAAAAAAATGTAAAGCAAAAACGAGGATGGGTCCAAAAGTTTCTGCTGCTACACCTCCAGTTCATGTATACATTATACGGTATGTTTAGTTCGCATGATTCTCCTGTTAAGCTGCAAGTTCAATTTTTAGATGGAAGTTTTTCGCCTTCATTACTCAGTTTTATGAATGATAGATACTAGTGCTTTTCTGTACATGTAATGTCCTCTTATGTTTCCCATGTCTGTCTTTTTTAAATTTCCCTGTCCTCTATTGTTCAGGAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTAATACGCAGCAAAAGAAACAGTCAAACTACTGTTATTGGACCTCCTGGAGAGCCTATATGGAA</genome_strand>
        <mrna_strand>GCCAGTCGGTGTTCGGAACTTTTTCATTGATGGTTAACTTTGGGGCAAATTGCGTTTAATACAGACGGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAACATAAAACTTGACTTGTCACCGTTCCGCTTGTTCAACCTAATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCCTGTTCTATCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCATAAAGGGAAAACAGTCGGGCCTATTACAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCTAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTTATACGCATCAAGAGAAACAGCCAAACTACTGTTATTGGACCTCCTGTAGAGCCTATATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584498" ref_strand="+" ref_description="SGN-U584498 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345889|emb|CAO15404.1| (e_value=1e-24) unnamed; (*ATH) AT3G19830.1 (e_value=5e-23) | Symbol: None | C2 domain-containing protein, low similarity to GLUT4 vesicle protein (Rattus norvegicus) GI:4193489; contains Pfam profile PF00168: C2 domain | chr3:6886344-6889980 REVERSE | Aliases: MPN9.7; ">
      <seq>agcctttttcactttctctctctatctttggttctctctctaacacacacacagagagatagtcttgtctacatgcatccatctgtgctgaaaaaactgggaatttcatagcttgtaatgttgttttcgggtctctttgaaaaagataaagctttgagcgaattgggttttgggtttggattcatgtttattggtagttcattgtatacttcaagttcaacaactgttaattatagctcaaaaggcatctgggtttttgatattaatggtttttgaatcagtttctgctattacccctgatttccgtaaagtattttgggtatacccatctccttgtccatgtaaaagtaatggcagttcgtcggtgacgaggaggaggagtagggggaaattgggtttggattcgagtgttaggtataggattcgtgcgaaatgggtaattcgagcttgtgtgaatggtggagaccaccatagttttgacatgcagattagggatagtgctagaagaggagctagaaatattgtaattaagagatttgctgatgaattggatgcttatggaagagtctctgaggaattagaagcttctagatgttctagtaacaattttgctagttttcaagaagaccctattgtagataagctaaggactcaattgggggtgatgcatccattaccttctcctccaataaatcgaaatattttcggtctttttgcattgtttttctttgttggtgttgtttttgataaggtttgggcatctagaaagagtaatgctaagccaaaaaatggaggaaactccgggatatggtcacaggtcccaccaaacctttcttcattgttggagaaggaatttgcaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="15227" stop="13764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14927" g_stop="14064" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-U584498" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14927" e_stop="14064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTTTCACTTTCTCTCTCTATCTTTGTTTCTCTCTCTAACACACACACAGAGAGATAGTCTTGTCTACATGCATCCATCTGTGCTGAAAAAACTGGGAATTTCATAGCTTGTAATGTTGTTTTCGGTTCTCTTTGAAAAAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAACAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGTTGGAGAAGGATTTGCAAAGGAA</genome_strand>
        <mrna_strand>AGCCTTTTTCACTTTCTCTCTCTATCTTTGGTTCTCTCTCTAACACACACACAGAGAGATAGTCTTGTCTACATGCATCCATCTGTGCTGAAAAAACTGGGAATTTCATAGCTTGTAATGTTGTTTTCGGGTCTCTTTGAAAAAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAAAAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGTTGGAGAAGGAATTTGCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598691" ref_strand="+" ref_description="SGN-U598691 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157360878|emb|CAO70695.1| (e_value=2e-74) unnamed; (*ATH) AT2G31260.1 (e_value=5e-69) | Symbol: None | autophagy 9 (APG9), identical to autophagy 9 protein GI:19912149 from (Arabidopsis thaliana) | chr2:13329098-13334477 REVERSE | Aliases: F16D14.10, F16D14_10; (*SWP) sp|Q5KHR3|ATG9_CRYNE (e_value=8e-31) Autophagy-related protein 9 OS=Cryptococcus neoformans GN=ATG9; ">
      <seq>ctggtatgctgctgtatttggaactataacagctataagccgggctgcaataacagatgagcttcttgtccttgacccacagggagcaatgtcacttgttgtccaacatacacactttatgccaaagagatggcgagggaaagaaaatactgaggccatacgaacagagtttgaaactttattccagtatactggaatgatgttactagaggagatgacctcaatttttcttacaccatatctgctgctatttgatgtcccaaagaaggtacatgatattttgcgcttcattgcggacttcactgttcacgttgagggtgttggtcatgtgtgcagcttcagcgtgtttgattttcataatcatggcaatcgcaaatatggatcaccatttaattcttgcggcttgcgaagaaattctcaagggaaaatggagaaatcattcctaagctttcaaactagctatccttcctggcaacctgatgatcatggaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="21334" stop="18251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21034" g_stop="20848" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20847" i_stop="19134" i_length="1714">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19133" g_stop="19056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="265" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19055" i_stop="18973" i_length="83">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18972" g_stop="18902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="336" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18901" i_stop="18795" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18794" g_stop="18684" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="447" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18683" i_stop="18599" i_length="85">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18598" g_stop="18551" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="495" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-U598691" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21034" e_stop="20848"/>
          <exon e_start="19133" e_stop="19056"/>
          <exon e_start="18972" e_stop="18902"/>
          <exon e_start="18794" e_stop="18684"/>
          <exon e_start="18598" e_stop="18551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAGGTGCTTTTTTGCCGTGTGGTTTCTTATAAGCAAATAAATGTGAAAACAGACACTTCGTTGAAGTAACTGAAGTCTTGGTTTATGGATTTCCTATTTTCATTTAGAGCATATTATTAGTTTTTCCAGGAAAGTCATTTATAATTTATATAAAATTAAACTAATAAAATACCACAGTTGATTCGTTAAACAATTAATTGTAGAGCTAAATGTAATATTTTGCTTCAATAGAGTGTAATCATATAGAATGAATTCAGACAAGGCAGACCATCATCAATTCATTCATGAGCTCTTTTGTGTGAATTCAAAGTTACCTATTTCAGAAAAAAACAAGGCAGACCATTGTCATGATTTTTTCTTCATTCCACTTTTTTGGCAGTTTATCCTTCTTATTTCTTTTTATGTTTCTTTGATTGAGGGTGGGTTACTTTTTATTTATTAGATTCGAAGTTTGACTCTGCTGCATAGCCTTCTATATTTTAACTTCCTTCTTAATTTTTTTGTAATTTATCACAAAGTTTTGTTCGTAATGTAGCTCCAGCTGTAGGCTTTTTCAATACCTTTACTGTATTCTTCTCCGGAATTTTATTTTTTTATTTTTTAGAGAAGAATTTCCTAGATATATAGCCAGGTTATGCAAGAGCTTTACTGTTGACGGATATATTGTGTAGTATTTCATTACCTTATGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATCAAAAAAGATTGTGTGGTATTTCATTTTACCATGAGATTGTTATGGACTTCTTCTTATGCAAGAGAGAAAGGTTCAAGTATCTTGGGTCCATAATTCAAGGAGACAGGTCGATCAACGATGATGTCGCACATCGTAGTGGAGAGGGATGGGTGGAGTAGAGACTTGCCTCTGGGTACTGTGCGATAAAAATGTGTCATCAAGGCTTACAGTAAGTTCTACATAGTGGTTGTTAGACCAACACTAATTGTATTAGGTAGAGTTCCAACTAGTCAAGAATGCCCACGGTCAGAAGATGAAGGTAGCGGAGATGAGGATGCTCACATGGATGTGTGGGTATATTAGGAGAGATATGCTTAAGAACAAAGATATATGGGACAAGGTGGGAGTGACCTCCGTGGCTGACCAAATGAGGAAAGTGAGGCTGAGATTATTCATACATGTGAAGAGGAAGATTGAGGATGCGTCAGTGAGGAGGCGTGTGAGGTTGGTTGAAGGCTTGTAGCATGAGTTAGGATAGGTAGAGGTAGGCCAAAAGAATTGGGGGACGTGATTAGCCTGGACATGACACAATTTCAATTGACTAAGGACTTGACCTTAGATAGAAAGGTCAAGGATTAAGGTAGAAGGTTAGTAGGTAGTTGAATTCTGTTTTACTTCTAGTAGTATGTTTTAGGTATCACGTAGTTCCTTTTTTCTCCAAAGTGTATTAATGTATGTTCTGCACTTGTTTTTCACATTGCTATTTTGCTGTCTCCTTTCTTACTTACTTTTCCTACGTTGGTTACATTTCTTTTGAGCTGAGGGTTTGTCGGAAACAACCTCTCTACCCCGCAGAGGTTGAGGTGAGGTCTGCACACATCTTACTCTCCCTAGACCCCAATTGTTGTTGCTGTTGCTTTATGCAAGTGTCTCACTGTCAATGGCTAAATGGGGTAGTACTTCATTTTACGGTAAGATTGTTATTGACTTCTTATTAACTCATCCTGCAGTATACTGGAATGATGTTACTTGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGTTGTCCCAAAGGTGATCTTTATTTTTAAGGATAATTTCCTCATCTACCTAGCTTGAGTTAATGGTCGCTGACATTTGGATGTTTTTTGTAACAGAAGGTAGATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAGGTTAGTAATTATATCAGCTTTGCTTGGATCTTCACATGTTGGTAGCTCCTATTGACAGAGCTCCCACATTTCAATCTTCAAGCACTGATTTATGTCTCTCTGGGCAGCTTCAGCGTGTTTGATTTTCAGAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTCCCGCTTGCAAAGAAGTTCTCAAGGGAAAATGGAGAAATCATTCCTAAGGTTGGTCTTATAATTACTTGAGGCTGTTTTGAATTATTGTTGATTTAAGAGCTTTCAAATAACAGTACATGTCAAATGGTTTCAGCTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</genome_strand>
        <mrna_strand>CTGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGGAATGATGTTACTAGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGATGTCCCAAAG...................................................................................AAGGTACATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAG...........................................................................................................CTTCAGCGTGTTTGATTTTCATAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTGCGGCTTGCGAAGAAATTCTCAAGGGAAAATGGAGAAATCATTCCTAAG.....................................................................................CTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601144" ref_strand="+" ref_description="SGN-U601144 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaaaccttttggacttacagaagagaaagaagaagaaaacaatctacaattgcacacgaaacttaaccgtaattccccctttcattctccacgcaacccccaattcttccaccttatcacggcggtgaccggtgaccggtgaccggaggcagttcttcatcagaagtatctcgtcgtttattgcctcatcctttttggggttgatttcatcgtttatgtggggctgacggaaagttatagtttttatattcaattcaatcgtaaggagaaaaaacctagaaaaaattgaggtttttagtgtaagcccatattttatttagctttggtggggaggtttatgtggttattgtgcgtttttggatattggtggaggtagggaaaggtggtccggacactaaaattatcaaagggaacacaaaaagatcaccttttttccaactgggtttattttgaattgttgaaaatctgagcaagctggtctgagcatcaccatcgaaagaaaattcagtttcctcaactgggtttcttggaattgcttagaattgtttcaacaaattgtttattttattggtatattgagaatatcagctgggcattggtggaaacagtgaattattaagttcagtgctatattttaattacttggtccatggggagttgtcagggggtgtttgcatatcgtcagcgtacatgaatgangttcagtnnncaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="26433" stop="23020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26133" g_stop="25508" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25507" i_stop="23401" i_length="2107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23400" g_stop="23313" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="714" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-U601144" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26133" e_stop="25508"/>
          <exon e_start="23400" e_stop="23313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTTTTGGACTTACAGAAGAGAAAGAAGAAGAAAACAATCTACAATTGCACACGAAACTTAACCGTAATTCCCCCTTTCATTCTCCACGCAACCCCCAATTCTTCCACCTTATCACGGCGGTGACCGGTGACCGGTGACCGGAGGCAGTTCTTCATCAGAAGTATCTCGTCGTTTATTGCCTCATCCTTTTTGGGGTTGATTTCATCGTTTATGTGGGGCTGACGGAAAGTTATAGTTTTTATATTCAATTCAATCGTAAGGAGAAAAAACCTAGAAAAAATTGAGGTTTTTAGTGTAAGCCCATATTTTATTTAGCTTTGGTGGGGAGGTTTATGTGGTTATTGTGCGTTTTTGGATATTGGTGGAGGTAGGGAAAGGTGGTCCGGACACTAAAATTATCAAAGGGAACACAAAAAGATCACCTTTTTTCCAACTGGGTTTATTTTGAATTGTTGAAAATCTGAGCAAGCTGGTCTGAGCATCACCATCGAAAGAAAATTCAGTTTCCTCAACTGGGTTTCTTGGAATTGCTTAGAATTGTTTCAACAAATTGTTTATTTTATTGGTATATTGAGAATATCAGCTGGGCATTGGTGGAAACAGTGAATTATTAAGTTCAGGTAAATTGTATTGTTCTCTTGTAATATCTATCTTGTGTTGTGAATTGTTTCGGTTCGGATTCAGGACAATGCATGCTTAGTGTGGATGTAATTTTCAATTCTAGGGTAAATTGTCTTACTTTGAATATGTATATGTGACCTCTTAATAATGGGTCAGGGGTATTTTGTAGAGTGTCATGAAGAATATGAAGATAATCCGGAATGGTAATTAGAAAGTTATATCTTTTGGAATATTTTGTTAACCAGTAAGATATCAATAAACGACCATCTTCATTCCAATTTAGTTGGAATTGGTTGTATGAATCATTCAATTTTCTTTAGAGACTGATTGACTGCTGTAACGATTAGCTGCATTGTCTGTTTTTGGGAAAACCTTGCTCACATACATGATCATGTTAAGTACACAATAGAAGTAACCAAAGAGAAAGCAGGACAATTGATGCTCCATATCACACTCCATTTAAAACCGGCATCAACCAGTGCATATCAGTGTGTAAATGTTGATAAATTTGTACTTCCCCCTCACAGATTTCTTTTCCCCCTAAAGTTTGCAATGATCAATCTTTCCTGGTAGAGTTTTATTTCCATGAACATTTAAGAGAGAACTTTTAGTGTTGCCTTCGTCTTCCTTAACCTCGTCATCCTCGTTTTTTCTACAGATCACCTTCCGTGCTACTAAGATCTTCCAACTTGCCCTTTCAACTACTCCCCTTGTAGCTTCTCCTCCTCTAACAATGTCCCTGCTAGCTCGTTTTTCACTTGAATCAGATAAGCTTATTTTTCTGATAGGTGGTTCCAATTCATGGAAGTCGTCATGTATCTTTGTGATATTTGTTTCTACTCTTTTGATACTTCCTAACTCAACTCCTCAACTCCTCCTTTAGTGTCTTCAATTTGTTTGGCCGTTTTTTTTTATTGCTTTTTTTATAATTGGATAATTGTCCCACTATGGTTTCTTCATCCTTAAGGTCCTCATGTTGTGGTTATTTACTCAAATTAAAACGTGTTGGACTGCTATCATATTTCTCTGCAATTGAGCATTATCGGTTCATGATCAGATACCTGCCCCACCATGGTTTTGGCTAATACATCAGCTCACTTCCAATTCAGCATATGAGGCCCCTTTATTACCATCTATTTGGTCATTTGGATTCCATAGCCTGCATGAATTTTTTTGTTTCATGGACAAAATACTTCAATTAGTTTCCCTACCTTGCATTACCCCCTCCCCCCTCCCCCCGTTCCCAATGATTGTGCAAGCATTCATGCTTCTTTTACTCCCACCTCCTCATGTTCCTAGTTCCCAGTATTTGGGTCTGTCTGCACTCTGCAGTTTTAGTTCTTTCTCGTTGATTCACTCCTCTAAAGATTCAATACCCCCTCCTCAAACCCCAAACGCCAATCAACACGCCAACCCCCATTGATGTTTTCCCTTGAAAGTATCAGGAGGAAGGTAACCTTAATGACTTATTCCTCTTTTATTGAGAGGAGACATGCAACTCAATATGTAAAAACCCGAGATCCATGAACCAGCTCCAATCTGCTGAAAACTTTTGAAAATGTTTCAAAATTACTAAAATGTGCTTAGGTACTTGTGCGTGTAAAAGGTCCATCAGCTTAGAACTGGAAGTTTGACTTGCAAGTGTATTTCCTTAACTAAGTTCTTGCAAAATATTGAATCTGCCGTTCTCATGAGTTATGACCTTTGTTTTCATGCTCTGTTGGGTTAATGCTTTGAGTTTCTCTGGTAACTGAGTCATGCAGAACTAGGATAGACATAGTGCTCAAGGCTTAAGTAGAAATTTTGCTTCCCTTTGGTTTTTCAGTATTTGGTACTTGGCTGGAGCTCTGTGGGACTCTCACATAATATTATGTTGGTATTTCCAATCAGAGGTGGTAAGTGATATGAAGAAAAAAGAAAACTTTAGATAAAACAATTATTGATGGTTTGTTATGCATCGGAGATCAATTTTACCACTTACAAACAACAATATACCCAGACACGTAGTATAATCCCACAAGGTAGGGGGAGGGGTAGGGGTATACTTATTTATACTTTGAAGACAACCTGAAGAATGACTTGGTGTTTTCTCTTTTTTCTTTTCAGTGCTATATTTTAATTACTTGGTCCATGGGGAGTTGTCAGGGGGTGTTTGCATATCGTCAGCGTACATGAATGATGTTCAGTGGACAAA</genome_strand>
        <mrna_strand>AAAAACCTTTTGGACTTACAGAAGAGAAAGAAGAAGAAAACAATCTACAATTGCACACGAAACTTAACCGTAATTCCCCCTTTCATTCTCCACGCAACCCCCAATTCTTCCACCTTATCACGGCGGTGACCGGTGACCGGTGACCGGAGGCAGTTCTTCATCAGAAGTATCTCGTCGTTTATTGCCTCATCCTTTTTGGGGTTGATTTCATCGTTTATGTGGGGCTGACGGAAAGTTATAGTTTTTATATTCAATTCAATCGTAAGGAGAAAAAACCTAGAAAAAATTGAGGTTTTTAGTGTAAGCCCATATTTTATTTAGCTTTGGTGGGGAGGTTTATGTGGTTATTGTGCGTTTTTGGATATTGGTGGAGGTAGGGAAAGGTGGTCCGGACACTAAAATTATCAAAGGGAACACAAAAAGATCACCTTTTTTCCAACTGGGTTTATTTTGAATTGTTGAAAATCTGAGCAAGCTGGTCTGAGCATCACCATCGAAAGAAAATTCAGTTTCCTCAACTGGGTTTCTTGGAATTGCTTAGAATTGTTTCAACAAATTGTTTATTTTATTGGTATATTGAGAATATCAGCTGGGCATTGGTGGAAACAGTGAATTATTAAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATATTTTAATTACTTGGTCCATGGGGAGTTGTCAGGGGGTGTTTGCATATCGTCAGCGTACATGAATGANGTTCAGTNNNCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594183" ref_strand="+" ref_description="SGN-U594183 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30698937|ref|NP_177485.2| (e_value=7e-80) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G73430.1 (e_value=6e-82)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=4e-21) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3; ">
      <seq>gaaacagttgtggaagtggaagaagacagtattgataaacccatggcgacggcaacaaggcccggtgtcccaaagtcggcagctatttccaaaggctacaatttcgcttctacttgggaacagaatgctccgttaacagagcaacaacaagcagccatacaagcactttcccatgcagttgctgagagaccttttccgtccaatttggtgaattattccttcttggttggtttcagaatacatctatctcaaactcaaattacttgtttttatttcaatttccaggatcaagtttctggacacgataacagtttctctgtctcaacaaaactcaattctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttctacaagtggtttgcagatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaaacagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaaaaagctcaattactttgatgaattggagaatgttgcaaccactttttattctcctagcatgagtgttggntagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="28524" stop="33965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28824" g_stop="28946" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29748" g_stop="30011" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="387" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31642" g_stop="31686" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="432" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31877" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="507" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32002" g_stop="32097" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="603" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32605" g_stop="32682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="681" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33624" g_stop="33661" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="719" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U594183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28824" e_stop="28946"/>
          <exon e_start="29748" e_stop="30011"/>
          <exon e_start="31642" e_stop="31686"/>
          <exon e_start="31803" e_stop="31877"/>
          <exon e_start="32002" e_stop="32097"/>
          <exon e_start="32605" e_stop="32682"/>
          <exon e_start="33624" e_stop="33661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAGGTTCATCCTCTGTTTTCCTTTTTCCCATTTTTTACAGTGATCACATTTTCTCCAGATTTACTAGATCTGTCTGAATGCATAACAAAAGTTATGTTTGATGACTGCATTGCACTCATCGCTGCGTAAATTAATGAATATAGTGAAGTGCTGTTTGAAAAAGAGAATCACAATATTTGGTTTGATGTATTGCTGGACTTGTTGGATTCGTTGCAGATTAAGAGAATCCTTTCCAGCAAATGTATTGGTACTGAGTTTCATGAAATTTTCACTGACCAAAAAAATAAAAAAAAAGAGAAAGAAAAGGGTGTCAAAATTGTTTCTTTGTGTGATGTGATGAAGTTCTCTCATTTAATTTCAAGCCTGTGTTTGTTTGTTTGTTGCCTCGTTTCGATGAAAGGATTTAGCAGCTTGTAATTGTGTAGCATATTCTCAATTAAACTATCTTTTCATGTTTTATTCTCATTGTAATGTGACATTGCTTCTCTTTTTCCTCGTTGGCTAACTAGCTGTTTTCTTATCTACTGACACTTTTAGTTTTAGCTTGTTCTTGCTATTACTATTGGAAAATCACCTTATCAGTACTCACCTCCATCATGGATTTGATCTTTTATTTTTTGCGTTTGTTGGCCCTCAACATGTCAAAGTATATTGTTTGTATTGATAGAAAGAATTGTTTGTATGTATGTACATGTGTCTATTTCAGGTCTATTGAAAGTTATTCCTTTAGATTAACTAAATCCGCATTAGTGGCTATCTTGATGTTTATATCTTCAACGACTTGAGCTAGTTTTCTTCTTACAGAATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAGGTGAGTTACTTTTGCGAGTGGAGTCGAGTTTCTCCCATTTGAGGGGCAGTCTCTGTTCCCTTACTTCCTTTTGGTGCACGCAGAGAGTACCTTGTATAAATGATTGGGTGGAGTTTGTAGACAATTATATCTTGTTGTAGATGCTTTACTGTTTGGAATAGCCCTGGTATATGGCCAATTTGCCCATGATTATGAATGAAAAAATATTACCTGAATAAAAAAAACAATGTTTAGTTGGCACATCCTTTATTTTTTACATTTCCAGGTTGCAGATCTTAATATTCCATATTTCAAATAAGGGATCATGGATGATTTATTCCCTTATCAAAAAGGTTACATGGTCAGCTAAATGTTGGCAAGGAATCAAAACTAATAACATCTTGCAACCAATGCTAAAATATAGAGATATATTTGTGTAAGACTATAAAGTTGTAGTGTCTTGTACTCAGTGACTCATCAGCCACACATAACTGCTAAACCAATGAATATTTTTTATGATAAGGTAACTGCTAAATTGATGAGTTGAACAGAAGGCCTGATAATTGCTTGTTAAGAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCCTCTCATTTTGGTTCTGATGATTGTCATTAACTAAAGAGGAAACGCCTTATGCTGGGCAAAGAATGACTAGAACTCACATTTAGTGAGAAATGATAGTCAATGTCTTCTGGGGTAGGAATAGCAAAATTGCATGGAATGTGTTCAGGGATGATGACCATAGTGGCTGTTTATGGCCTGGACCCTACCTGCTTGAGTAGAACAGTATTTGTGTCTATATATCAGAAAGACATTCAAAGCAATTTGTTCTAGAACTTCCTCCATATTTGAACTATAGTAGGCCTTCCATGCCATGGAGTTTGTTTTAGATTCTTAATTTGCATGCATGTGAAATGATAGAGATAGCCCTAGAAGTTATTTTCTTTTCTCCTTTCGTTTTATTCTAGGTAAAGAGATTGTCCAATCATTATGAAATATATACCTTGTCACCAAACAAAAGTTCTCTGTCAAAGACATCATTCAACAATTTATACACACAAGAACCTTGTGGGTGCACAAAATTTAACTATAGGAGATGATTTCTCAACCTTACGGAATCATTATCCACCCCTTTCAAAAGACCTACTCTCTCCTTCCAAAGAACCACAAGGGCTAATGGAGCTATATCCCGTGCCTTCATCTTCTTCTCTTCATAGTAAAGCCCCCCAGCTAGTCACACAATGAAGGTATGGTTTTCCATGTGTCTCTTTCCATTTCCGACGCCTTTTCCTGTTCAGTAAAGTCAAATTTCTTCACGGATCTTGGCAATTTGCATGATTCTCTTTACTCCAAAATGTTAAAAGTTACAGTCATAACTGTCAGGCTATTGGGCAGTGTAGTTGGAGTTAATCACCATCGGAATCGCTCGATTAGTACATGTCACTGTCCAGCAGAAGCAATCCACTTAATAAGAAGCTTTAGTTTTCCAAATTCGTTTCCATGGCAATCTTTGTGTTGCATTCTTGTATACGCTTGAATACTGAATATGCTTCCTTTTCTGTAATGCTGCTTGAACTTGATATGCGTTTCCTCTTCCCCTTTGTGCTGTTTTGTTGATGCAGTTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAGGTTGGTCTTAGCTTGTTTATATGTTTTCTGTTTCTTCCAAAAGTTACGACTCACATGCTTCCTCTTTTACACTTGCTGATAAAAAAATATTACATATGCTTTCTTTCTGTGCGTAGACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAGGAAAAACAATGCTCATATACTCTTCTCTTAAGCCTTTTTGTTGTTGCTGTTCATCTATCTATGCTTACTTTCGAATGACATGCCCTTACCCTTAAAACTGGCTCCATTGCAGGTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATGTGGGGTAACTTTAGCTATAGATTGTGCTTTTCTCTTTCATTCTGTATAAAATTTAGAGGAACAAAGGAGCAGATTAACATTAATTGTATGATAAGAGGATACGCTTGTAGCTAATGGAGTTCAATTTTTTGATGGACATAGTTTGCCTTGCTTTATGATGTTGAAAGTCATCATTGCCAATCTACAATATGGATGGATAGTTGCCAAATATCTTTAATTGCCACCTAGTACCAAGTAAATGCATTTCTTCATTTTGCGTTTACTTATTTTTTCTTCTATCTGAAGTGGCTGTTTGGCTTAAAGCATTATCTAGGTACAATTCATGTCGATATTGCATATTTATGATGTCCAGTGGGTGGTATTTGAAACTAGGAAGTTCCCTTTCAGTCTCTTATATTAATGAACATATAAAGAGGTAATAATTAACAACAGGGAGCAGCATTTGAATAATCTTCTTGTGTATTTCTTGTTTATTTGCAGCTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAATGTAACGTCCGACTACCATTTATGTTGATAATATTCCATTTTTATTCAATTCCTTTTGCACTAGTTTCCACAGTAGTCTATCTATGCCTATGCTGAATTGCGTATGGTTCAACAGTCTCCAACATTAGCTTTTTCTGTCATATCCTCATTTTCCTACCCTTAATTTGGGTATCATTTTTCTGATTAGGGTTTGGTTTAGGATTAGGGGGATACGAATGGCCTGCATCAACTATATTTTGGGTGCAGAGAGTTAATGCTATCTATATATATTATGCTTTGATACATTGGTGAGGAAATATACCTAACTGAGAGTTTGAACTTTGAACTATGGAAAACAGCTTTAAGAAGTGAGAGCTTTATGCCTCAAGAGATATATGTTTCTTAATTAGATTTTTTCCACACCCACACAACGGAGGGCAGAGCTTTATTCTTTGTAAATTAAGCTTTGATTTAGATCGTTTTCTTCCTCGTGTTACAAATGAGTCGTCCAAAGCTATTCTTTCTCGTCTTCTCTAATCTAGTGCTTTTGGATTATTTTGACGTGTCTTGCTTAGCAAGTTATTTATTTAAGGTAATTTTTAATCTCGTCTTTTAGTCAACTCTTATTTGTCCTATTTATGTGCTTGTTGGTTTCTAAAGGAAAGCTCTTTTAATTGTGAGATTGAAAATGAGAGTTCCTGTTTTAAATTCCCTATAGAGGAATATGTTTTTCACTCTCCACTGTTGATATTCTTGGTTTAGTTATGCCCATCAGCCTAAAATCTTCAAATGCCTTTTTGTTTAATTACAATTAATTGGGGCATTGCATCAACTTGATTTATCTTGTGCTAAATTTCCATTCAAGTCCTACTCTTCTTATTGAACTTCTCTAAATGTCAAAATACCCAGTTTTCTGTTTTTTTTATTTAGTCCCTCATGGTTGTCTTGCACTCCTGTTTGCAGGTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGG</genome_strand>
        <mrna_strand>GAAACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG............................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570487" ref_strand="+" ref_description="SGN-U570487 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|22654989|gb|AAM98086.1| (e_value=1e-90) At1g73430/T9L24_16 [Arabidopsis thaliana]; (*ATH) AT1G73430.1 (e_value=9e-93)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=5e-28) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3; ">
      <seq>gacggcgacggcgacggcnacggcaacaaggcccggcgttccaaagtcggcagctatttccaaaggctacaattttgcttctacttgggaacagaatgctccgttaacagagcaacaacaagcagccattcaagcactttcccatgcagttgctgagagaccttttccgtccaatttggatcaagtttctggacacgataacagtttctctgtctcaacaaaactcaattctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttctacaagtggtttgcagatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaaacagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaaaaagctcaattactttgatgaattggagaatgttgcaaccactttttattctcctagcatgagtgttggtagtacaaattttctaccattgcttaaaaganttgatgaangcatatcanatgttgagagtaacccacanatgcagagtgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="28564" stop="34277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28853" g_stop="28946" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29748" g_stop="29831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="178" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29832" i_stop="29909" i_length="78">
            <donor d_prob="0.811" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29910" g_stop="30011" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31642" g_stop="31686" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="325" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31803" g_stop="31877" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="400" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32002" g_stop="32097" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="496" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32605" g_stop="32682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="574" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33624" g_stop="33709" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="660" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33710" i_stop="33954" i_length="245">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.060" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33955" g_stop="33991" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="696" r_length="36" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U570487" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28853" e_stop="28946"/>
          <exon e_start="29748" e_stop="29831"/>
          <exon e_start="29910" e_stop="30011"/>
          <exon e_start="31642" e_stop="31686"/>
          <exon e_start="31803" e_stop="31877"/>
          <exon e_start="32002" e_stop="32097"/>
          <exon e_start="32605" e_stop="32682"/>
          <exon e_start="33624" e_stop="33709"/>
          <exon e_start="33955" e_stop="33991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAGGTTCATCCTCTGTTTTCCTTTTTCCCATTTTTTACAGTGATCACATTTTCTCCAGATTTACTAGATCTGTCTGAATGCATAACAAAAGTTATGTTTGATGACTGCATTGCACTCATCGCTGCGTAAATTAATGAATATAGTGAAGTGCTGTTTGAAAAAGAGAATCACAATATTTGGTTTGATGTATTGCTGGACTTGTTGGATTCGTTGCAGATTAAGAGAATCCTTTCCAGCAAATGTATTGGTACTGAGTTTCATGAAATTTTCACTGACCAAAAAAATAAAAAAAAAGAGAAAGAAAAGGGTGTCAAAATTGTTTCTTTGTGTGATGTGATGAAGTTCTCTCATTTAATTTCAAGCCTGTGTTTGTTTGTTTGTTGCCTCGTTTCGATGAAAGGATTTAGCAGCTTGTAATTGTGTAGCATATTCTCAATTAAACTATCTTTTCATGTTTTATTCTCATTGTAATGTGACATTGCTTCTCTTTTTCCTCGTTGGCTAACTAGCTGTTTTCTTATCTACTGACACTTTTAGTTTTAGCTTGTTCTTGCTATTACTATTGGAAAATCACCTTATCAGTACTCACCTCCATCATGGATTTGATCTTTTATTTTTTGCGTTTGTTGGCCCTCAACATGTCAAAGTATATTGTTTGTATTGATAGAAAGAATTGTTTGTATGTATGTACATGTGTCTATTTCAGGTCTATTGAAAGTTATTCCTTTAGATTAACTAAATCCGCATTAGTGGCTATCTTGATGTTTATATCTTCAACGACTTGAGCTAGTTTTCTTCTTACAGAATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAGGTGAGTTACTTTTGCGAGTGGAGTCGAGTTTCTCCCATTTGAGGGGCAGTCTCTGTTCCCTTACTTCCTTTTGGTGCACGCAGAGAGTACCTTGTATAAATGATTGGGTGGAGTTTGTAGACAATTATATCTTGTTGTAGATGCTTTACTGTTTGGAATAGCCCTGGTATATGGCCAATTTGCCCATGATTATGAATGAAAAAATATTACCTGAATAAAAAAAACAATGTTTAGTTGGCACATCCTTTATTTTTTACATTTCCAGGTTGCAGATCTTAATATTCCATATTTCAAATAAGGGATCATGGATGATTTATTCCCTTATCAAAAAGGTTACATGGTCAGCTAAATGTTGGCAAGGAATCAAAACTAATAACATCTTGCAACCAATGCTAAAATATAGAGATATATTTGTGTAAGACTATAAAGTTGTAGTGTCTTGTACTCAGTGACTCATCAGCCACACATAACTGCTAAACCAATGAATATTTTTTATGATAAGGTAACTGCTAAATTGATGAGTTGAACAGAAGGCCTGATAATTGCTTGTTAAGAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCCTCTCATTTTGGTTCTGATGATTGTCATTAACTAAAGAGGAAACGCCTTATGCTGGGCAAAGAATGACTAGAACTCACATTTAGTGAGAAATGATAGTCAATGTCTTCTGGGGTAGGAATAGCAAAATTGCATGGAATGTGTTCAGGGATGATGACCATAGTGGCTGTTTATGGCCTGGACCCTACCTGCTTGAGTAGAACAGTATTTGTGTCTATATATCAGAAAGACATTCAAAGCAATTTGTTCTAGAACTTCCTCCATATTTGAACTATAGTAGGCCTTCCATGCCATGGAGTTTGTTTTAGATTCTTAATTTGCATGCATGTGAAATGATAGAGATAGCCCTAGAAGTTATTTTCTTTTCTCCTTTCGTTTTATTCTAGGTAAAGAGATTGTCCAATCATTATGAAATATATACCTTGTCACCAAACAAAAGTTCTCTGTCAAAGACATCATTCAACAATTTATACACACAAGAACCTTGTGGGTGCACAAAATTTAACTATAGGAGATGATTTCTCAACCTTACGGAATCATTATCCACCCCTTTCAAAAGACCTACTCTCTCCTTCCAAAGAACCACAAGGGCTAATGGAGCTATATCCCGTGCCTTCATCTTCTTCTCTTCATAGTAAAGCCCCCCAGCTAGTCACACAATGAAGGTATGGTTTTCCATGTGTCTCTTTCCATTTCCGACGCCTTTTCCTGTTCAGTAAAGTCAAATTTCTTCACGGATCTTGGCAATTTGCATGATTCTCTTTACTCCAAAATGTTAAAAGTTACAGTCATAACTGTCAGGCTATTGGGCAGTGTAGTTGGAGTTAATCACCATCGGAATCGCTCGATTAGTACATGTCACTGTCCAGCAGAAGCAATCCACTTAATAAGAAGCTTTAGTTTTCCAAATTCGTTTCCATGGCAATCTTTGTGTTGCATTCTTGTATACGCTTGAATACTGAATATGCTTCCTTTTCTGTAATGCTGCTTGAACTTGATATGCGTTTCCTCTTCCCCTTTGTGCTGTTTTGTTGATGCAGTTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAGGTTGGTCTTAGCTTGTTTATATGTTTTCTGTTTCTTCCAAAAGTTACGACTCACATGCTTCCTCTTTTACACTTGCTGATAAAAAAATATTACATATGCTTTCTTTCTGTGCGTAGACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAGGAAAAACAATGCTCATATACTCTTCTCTTAAGCCTTTTTGTTGTTGCTGTTCATCTATCTATGCTTACTTTCGAATGACATGCCCTTACCCTTAAAACTGGCTCCATTGCAGGTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATGTGGGGTAACTTTAGCTATAGATTGTGCTTTTCTCTTTCATTCTGTATAAAATTTAGAGGAACAAAGGAGCAGATTAACATTAATTGTATGATAAGAGGATACGCTTGTAGCTAATGGAGTTCAATTTTTTGATGGACATAGTTTGCCTTGCTTTATGATGTTGAAAGTCATCATTGCCAATCTACAATATGGATGGATAGTTGCCAAATATCTTTAATTGCCACCTAGTACCAAGTAAATGCATTTCTTCATTTTGCGTTTACTTATTTTTTCTTCTATCTGAAGTGGCTGTTTGGCTTAAAGCATTATCTAGGTACAATTCATGTCGATATTGCATATTTATGATGTCCAGTGGGTGGTATTTGAAACTAGGAAGTTCCCTTTCAGTCTCTTATATTAATGAACATATAAAGAGGTAATAATTAACAACAGGGAGCAGCATTTGAATAATCTTCTTGTGTATTTCTTGTTTATTTGCAGCTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAATGTAACGTCCGACTACCATTTATGTTGATAATATTCCATTTTTATTCAATTCCTTTTGCACTAGTTTCCACAGTAGTCTATCTATGCCTATGCTGAATTGCGTATGGTTCAACAGTCTCCAACATTAGCTTTTTCTGTCATATCCTCATTTTCCTACCCTTAATTTGGGTATCATTTTTCTGATTAGGGTTTGGTTTAGGATTAGGGGGATACGAATGGCCTGCATCAACTATATTTTGGGTGCAGAGAGTTAATGCTATCTATATATATTATGCTTTGATACATTGGTGAGGAAATATACCTAACTGAGAGTTTGAACTTTGAACTATGGAAAACAGCTTTAAGAAGTGAGAGCTTTATGCCTCAAGAGATATATGTTTCTTAATTAGATTTTTTCCACACCCACACAACGGAGGGCAGAGCTTTATTCTTTGTAAATTAAGCTTTGATTTAGATCGTTTTCTTCCTCGTGTTACAAATGAGTCGTCCAAAGCTATTCTTTCTCGTCTTCTCTAATCTAGTGCTTTTGGATTATTTTGACGTGTCTTGCTTAGCAAGTTATTTATTTAAGGTAATTTTTAATCTCGTCTTTTAGTCAACTCTTATTTGTCCTATTTATGTGCTTGTTGGTTTCTAAAGGAAAGCTCTTTTAATTGTGAGATTGAAAATGAGAGTTCCTGTTTTAAATTCCCTATAGAGGAATATGTTTTTCACTCTCCACTGTTGATATTCTTGGTTTAGTTATGCCCATCAGCCTAAAATCTTCAAATGCCTTTTTGTTTAATTACAATTAATTGGGGCATTGCATCAACTTGATTTATCTTGTGCTAAATTTCCATTCAAGTCCTACTCTTCTTATTGAACTTCTCTAAATGTCAAAATACCCAGTTTTCTGTTTTTTTTATTTAGTCCCTCATGGTTGTCTTGCACTCCTGTTTGCAGGTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGTAGTACAAATTTTCTACCATTGCTTAAAAGACTTGATGAATGCATATCGTAAGTGACATTTCATTTCATATTACTGCAATGAAATCTTATGAATATTAGAACCACTGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTGTTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGTTGAGAGTAACCCACAATATGCAGAGTGCAGC</genome_strand>
        <mrna_strand>GACGGCGACGGCGACGGCNACGGCAACAAGGCCCGGCGTTCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTTGCTTCTACTTGGGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATTCAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTG..............................................................................GATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG............................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGTAGTACAAATTTTCTACCATTGCTTAAAAGANTTGATGAANGCATATC.....................................................................................................................................................................................................................................................ANATGTTGAGAGTAACCCAC-ANATGCAGAGTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584096" ref_strand="+" ref_description="SGN-U584096 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342462|emb|CAO65174.1| (e_value=3e-111) unnamed; (*ATH) AT1G73430.1 (e_value=5e-107)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=3e-36) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3; ">
      <seq>cgttgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacggaagaagtcattggctgggttacctccaacgctagacaggattctagctaatgttcatgaacgattaacttttcgtgctcgcacctatatccgtgatgaggttatcatgatagctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="33467" stop="38947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33764" g_stop="34021" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34022" i_stop="34185" i_length="164">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.127" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34186" g_stop="34248" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="325" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34346" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="427" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="532" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="625" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="714" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38421" g_stop="38640" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="934" r_length="220" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U584096" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33764" e_stop="34021"/>
          <exon e_start="34186" e_stop="34248"/>
          <exon e_start="34346" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
          <exon e_start="38421" e_stop="38640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTG--TTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGT--TGAG-AGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAGGACTGACATCAACATTATGTAATACACTATCATATATGAAATCACATTTCTTTATACAGTTGGCATGGTTTAATGGCATTCTTGGACGTAAGAACTCTAATCCCGTTGCCCGTTCTTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAGGTAAATCTGCTTTATGCTTCACTGCTATATGCACCACAATCTTTGACTTGCAGATGAATGGTTGTATCTTCTGAGATAAATGTACCTATTTCATCAGGTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG</genome_strand>
        <mrna_strand>CGTTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGA-TTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAAGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584097" ref_strand="+" ref_description="SGN-U584097 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342462|emb|CAO65174.1| (e_value=3e-93) unnamed; (*ATH) AT1G73430.1 (e_value=2e-85)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q54TT4|COG3_DICDI (e_value=3e-39) Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3; ">
      <seq>atcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttgatatccttaaagttgaagttctaggagaacaattgagcagacggggggaatcattggctgggctacgtccaacgctggacagaattctagcagatgtacatgagcgattaacttttcgttctcgcacctatatccgtgatgagattgcaaattaccttccttcagaggaggatctggattaccctaaaaagttggagcaatctgtttcagcagaactggattcaccatctactgaactaaatcaagatgtttccggaacttggtatcctccactggagaaaaccatatcatgtctatcaaaactgtactgttctctagaaacagctgtttttactggattggctcaggaagctgtagagttttgctcgttatccattcaaaaagctagcaaacttattggcaaaagatcgtcatcaatggatgcacaacttttcctaataaagcatctactcatcctgagggagcaggaggtttctcttacctgcttatgaaattcctagttattgtcatagctgctggattctaacttaagatgccttccagattgccccattcgacatagaattttcagtcacgcataaggaacttgatttttcacatttgctggtgagtattgagtatctgccatttatgctggtattcattttttcgttgtccaccacttatctgctgcagatgtatatttctttaataatttcattatcacacttggagaagaagctctttttggatatatttttggtttgttataaaggcagagtttactagtgaaagaatggagatgggttattctttgttagctcttgttataagacttactagtgagaggggaagatacttaccccacgactctatttagattcctagagcttcgaggaaggtgtgtttctttgtatggttggtgggaaggggtgcggtcttaaaagcggcaaatttgaggaggatcacctttgttagttggtgcgttatgggtaagtgtgcatgagaaaaacaatgtgtctaatcggtcatggagggtggccgtcaacttgtttaggatgcaatgggtgatgtcaggcatagtgaaggaggcatgacaaagttagatgtcgggcacaatgaaggatgctttacaaagctggactcataagagggggaagagaaactttagggcatacagtgttgcccgtttagcaatcatgtgggtcatttggaaagggagaaataggagggcatgcaaaggagtggagcaagactcgtataattgcagagtagcgttttgtctctagtttctcttttggtgtactttcgaggtccctatttgcatagaggattgaatctcttatgttgagaaccatattttgatctaggctctcttcttttgatatacggcttgtatacgggctactacccccgtttgttaacaaaatgatttaccttctcaaaaagaataattctatcattttatagtgaaacggaccatcagtttaagccttcaaatctgagctttgaaactgtgcgtaactgatcctcgaggattctcggttataatcaaatgattatctaatcacatctcagagccattgagcagctcctattctgtagtggaatggaccatcagtttaagccttcaaatctcatgctacatgtgtccaatttcttagctatacaatgtttgattgactgttagattgtaagagttacttttataaattttcaggagcatctgaggcggattctaaggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="35238" stop="42726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35538" g_stop="35585" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38421" g_stop="38640" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="268" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39978" g_stop="40064" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="355" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40712" g_stop="40828" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="472" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40915" g_stop="40947" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="505" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="42426" g_length="1346"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="1852" r_length="1347" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U584097" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1851</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35538" e_stop="35585"/>
          <exon e_start="38421" e_stop="38640"/>
          <exon e_start="39978" e_stop="40064"/>
          <exon e_start="40712" e_stop="40828"/>
          <exon e_start="40915" e_stop="40947"/>
          <exon e_start="41081" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGGCATTTCAATTAAATGCTGTTTGGCGGCTTATCTGTTACTCAGACATGAGATAATATTATGCGAAACTTTGCGCATATTATTGTGCCACTCACTTTAATCTCTTTAATTTTCCTTTCCGCTTTCTTTGACTTTACCAGTTAATTAGCATTCTCATGGATAGATGAATAGTGCCAAAATTAGTTACAGGATAAATTAGGACTTCTTTTCTGTTGCATAGATTTTGGTTAAAAATGGAATGTTCATTTATACCAAACATAAGCAGGTAGCATCTCATGGTATATACTATATACTGTTGTTCAATATCTTAAACTTTTTCTCTTTATTGTTCTCGTAGCTGTACTATCTTCCATTGCTGTGATATGTAGTACCTTCCAAACAGAATAGCCCATTAGTGAAAATGAAGGATTTTTCATTGGATTTTGAAACACTTATCGTTTCAATTCTTTCCTATGATTGGCTTATCATGACAATGTACTCGAAAGTTGACCCTTGCACAGTGGAAGGAATATGCTTTGCGGCAGACTTCTGACAATTGGACATATCCAAGAGGCTCTTGAGTGAATTATACCAATTTATGTGATGTGGAGTAACCTTTTGGAATTTAAACCTAGTATGTACTTCATCCCTTTCTGATTACCTGGTTTCACTTAGTGTTGGACATACTAAGGAAAAATAGAAATCATAAAAGGTTGTACATTATAGTTTTTCTCTTTTTTGCAAACCCAAAGCCCCGAAAGAGAGAAAATTCCAGCCAAAGGCCTTCCAAGTTACAACTCTGTCTACTTATTTACAAGTTCATGGAAAAATATAGGCCTATCCATCATTATGAGGAAATGCTTTCGTGTTCACCTTATTTTTGGCATTGTTGATTTGATATTTGTTCAATGTTCATTCGGTTCCCGAGCTAATCTTTTCTCCTTCCTGCCATACTTCCCTTTCTGCTTTGTGCATCATTTGTTTGGATTAATAATGCAAAGTGGTATGAGCTTCAATGTTGTATAACTTCACTTGAGATGTGTTTAAATGGGAAACATGGTCAGGATGATTCGTATAGCTGGTCCCAACTAGTTCCGAGTGAGGCTTACTAGTTGTTGGTAGGAGTTCCAATGGATTTGTATGGAGATGAAAAATGTCGTCTATTAGGGAATATGATAAGTTGGGATTGATAAGAAAAGGAAATTAGACCATATAAGTTGGGGTGACTGGAGTAAAGTGCACATGTATGTTTGGTTTCTGTATGCTTGAACTTCCTCAGATGTAACCAGTGGTCTACAAATAATTTGGTCTGCATTCTTTCCCTGCTTTGTTTTCAGATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTGCCAAACTCCTTGTCCTGTGACGTGTATTCAGTTGAATTCTACATATATCTTTAGAGGAAGTAAGATCTAGGATGGCTTTTATCTTTATCTTTTTTTGGATCTTTGTACTTTTTTAATGGAGAAGTTTGCATTCTCTTATGAAGGTTCTGTTAATCAATATCTTGCTTAATGGTGTGAACTGACTCTTCTTGACCTGTGATTCTAGTTGGATGACATTTATTGTACAGTTCGAACTACAAAGCAAGCTATATTAAAGTTGAAGGTGTAAAAATTGGAAATTTAGAGGTCTGGTGGAATTTGTATATTAAAATTCTTTTTTCTTTTAAGAAAGAGTTCTAGGATTTGTGGTAGTATAGACTATAGAGCTTTTAATTGGTTATTTTATTTTCAATAGGTCAAATGTGCTGCTTTAGCAACTTTCACTAAGACTTGGTGTATATCGATAAAATTGTTTTAGAAGAAGATAAGTTAACTATTGCTGATTTATTTAACTTGAATTTGTTTTTTTGCTGATACTTTTCCTGCCTCTTTGCTGTCAAACATGATTTCTGCATTTTTGCACCATATTCTATGTATCAGTTTTTTTTCTTTTGCTACTTTGCACCATATTCTCTGATTCCTTATTTTAAATTTGGTACAGACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAGGTAAGCAGTTGGTTTCTATTAGTGTCCCTTTTAATTGTAGCCAGATGTTACTGGATCCTTATTTTCTCTTCTTTTTTTTTTCTCAGGAAGCTGTAGAGTTTTGCTCGTTATCCATTCAAGTAAGTTTTCTTCTTTATTGAAGTTCATGTATTCTGTTCTGCTGATTATGCTGTTAAAATTTGTAATCTTGTATTATTCATATTTTTTTGTTCAATATGCTGTTTGTTATTGCTGAACTTCTAATTCCTTCAGAAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTGGTGAGTATTGAGTATCTGCCATTTATGCTGGTATTCATTTTTTCGTTGTCCACCACTTTTCTGCTGCAGATGTATATTTCTTTAATAATTTCATTATCACACTTGGAGAAGAAGCTCTTTTTGGATATATTTTTGGTTTGTTATAAAGGCAGAGTTTACTAGTGAAAGAATGGAGATGGGTTATTCTTTGTTAGCTCTTGTTATAAGACTTACTAGTGAGAGGGGAAGATACTTACCCCACGACTCTATTTAGATTCCTAGAGCTTCGAGGAAGGTGTGTTTCTTTGTATGGTTGGTGGGAAGGGGTGCGGTCTTAAAAGCGGCAAATTTGAGGAGGATCACCTTTGTTAGTTGGTGCGTTATGGGTAAGTGTGCATGAGAAAAACAATGTGTCTAATCGGTCATGGAGGGTGGCCGTCAACTTGTTTAGGATGCAATGGGTGATGTCAGGCATAGTGAAGGAGGCATGACAAAGTTAGATGTCGGGCACAATGAAGGATGCTTTACAAAGCTGGACTCATAAGAGGGGGAAGAGAAACTTTAGGGCATACAGTGTTGCCCGTTTAGCAATCATGTGGGTCATTTGGAAAGGGAGAAATAGGAGGGCATGCAAAGGAGTGGAGCAAGACTCGTATAATTGCAGAGTAGCGTTTTGTCTCTAGTTTCTCTTTTGGTGTACTTTCGAGGTCCCTATTTGCATAGAGGATTGAATCTCTTATGTTGAGAACCATATTTTGATCTAGGCTCTCTTCTTTTGATATACGGCTTGTATACGGGCTACTACCCCCGTTTGTTAACAAAATGATTTACCTTCTCAAAAAGAATAATTCTATCATTTTATAGTGAAACGGACCATCAGTTTAAGCCTTCAAATCTGAGCTTTGAAACTGTGCGTAACTGATCCTCGGGGATTCTCGGTTATAATCAAATGATTATCTAATCACATCTC--AGCCATTGAGCAGCTCCTATTCTGTAGTGGAATGGACCATCAGTTTAAGCCTTCAAATCTCATGCTACATGTGTCCAATTTCTTAGCTATACAATGTTTGATTGACTGTTAGATTGTAAGAGTTACTTTTATAAATTTTCAGGAGCATCTGAGGCGGATTCTAAGGGGTC</genome_strand>
        <mrna_strand>ATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG......................................................................................GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA.....................................................................................................................................AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGG-AGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTGGTGAGTATTGAGTATCTGCCATTTATGCTGGTATTCATTTTTTCGTTGTCCACCACTTATCTGCTGCAGATGTATATTTCTTTAATAATTTCATTATCACACTTGGAGAAGAAGCTCTTTTTGGATATATTTTTGGTTTGTTATAAAGGCAGAGTTTACTAGTGAAAGAATGGAGATGGGTTATTCTTTGTTAGCTCTTGTTATAAGACTTACTAGTGAGAGGGGAAGATACTTACCCCACGACTCTATTTAGATTCCTAGAGCTTCGAGGAAGGTGTGTTTCTTTGTATGGTTGGTGGGAAGGGGTGCGGTCTTAAAAGCGGCAAATTTGAGGAGGATCACCTTTGTTAGTTGGTGCGTTATGGGTAAGTGTGCATGAGAAAAACAATGTGTCTAATCGGTCATGGAGGGTGGCCGTCAACTTGTTTAGGATGCAATGGGTGATGTCAGGCATAGTGAAGGAGGCATGACAAAGTTAGATGTCGGGCACAATGAAGGATGCTTTACAAAGCTGGACTCATAAGAGGGGGAAGAGAAACTTTAGGGCATACAGTGTTGCCCGTTTAGCAATCATGTGGGTCATTTGGAAAGGGAGAAATAGGAGGGCATGCAAAGGAGTGGAGCAAGACTCGTATAATTGCAGAGTAGCGTTTTGTCTCTAGTTTCTCTTTTGGTGTACTTTCGAGGTCCCTATTTGCATAGAGGATTGAATCTCTTATGTTGAGAACCATATTTTGATCTAGGCTCTCTTCTTTTGATATACGGCTTGTATACGGGCTACTACCCCCGTTTGTTAACAAAATGATTTACCTTCTCAAAAAGAATAATTCTATCATTTTATAGTGAAACGGACCATCAGTTTAAGCCTTCAAATCTGAGCTTTGAAACTGTGCGTAACTGATCCTCGAGGATTCTCGGTTATAATCAAATGATTATCTAATCACATCTCAGAGCCATTGAGCAGCTCCTATTCTGTAGTGGAATGGACCATCAGTTTAAGCCTTCAAATCTCATGCTACATGTGTCCAATTTCTTAGCTATACAATGTTTGATTGACTGTTAGATTGTAAGAGTTACTTTTATAAATTTTCAGGAGCATCTGAGGCGGATTCTAAGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595235" ref_strand="+" ref_description="SGN-U595235 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342462|emb|CAO65174.1| (e_value=3e-100) unnamed; (*ATH) AT1G73430.1 (e_value=6e-97)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q54TT4|COG3_DICDI (e_value=1e-40) Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3; ">
      <seq>ccattagttggagcaatctgtttcagcagaactggattcaccatctactgaactaaatcaagatgtttccggaacttggtatcctccactggagaaaaccatatcatgtctatcaaaactgtactgttctctagaaacagctgtttttactggattggctcaggaagctgtagagttttgctcgttatccattcaaaaagctagcaaacttattggcaaaagatcgtcatcaatggatgcacaacttttcctaataaagcatctactcatcctgagggagcagattgccccattcgacatagaattttcagtcacgcataaggaacttgatttttcacatttgctggagcatctgaggcggattctaaggggtcaggcatcaatctttgactggtcgagatcaacttcattagctagaactttatctccacgagttttggaaagtcaaattgacgccaagaaggaattggagaaaagcctgaaaactacttgtgaggagttcattatgtcagtgactaagttagttgtggaaccattgctttcttttgtgacaaaggttacggctgttaaagttgcattatctagtagtcaaaatcaaaaactggagtctgggattgcaaagccactcaaggatcatgcttttgcttcaccagaaaagattgccgagcttcttcagaaggtcaacacagcaatagatgaacatttgcctagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="39724" stop="48346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40019" g_stop="40064" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647">
            <donor d_prob="0.991" d_score="0.91"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40712" g_stop="40828" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="163" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40915" g_stop="40947" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="196" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41081" g_stop="41167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="283" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41245" g_stop="41307" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41308" i_stop="42398" i_length="1091">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42399" g_stop="42515" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42516" i_stop="46024" i_length="3509">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46025" g_stop="46117" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="556" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46118" i_stop="47893" i_length="1776">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47894" g_stop="48016" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="679" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48017" i_stop="48224" i_length="208">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48225" g_stop="48259" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="714" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U595235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40019" e_stop="40064"/>
          <exon e_start="40712" e_stop="40828"/>
          <exon e_start="40915" e_stop="40947"/>
          <exon e_start="41081" e_stop="41167"/>
          <exon e_start="41245" e_stop="41307"/>
          <exon e_start="42399" e_stop="42515"/>
          <exon e_start="46025" e_stop="46117"/>
          <exon e_start="47894" e_stop="48016"/>
          <exon e_start="48225" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTGCCAAACTCCTTGTCCTGTGACGTGTATTCAGTTGAATTCTACATATATCTTTAGAGGAAGTAAGATCTAGGATGGCTTTTATCTTTATCTTTTTTTGGATCTTTGTACTTTTTTAATGGAGAAGTTTGCATTCTCTTATGAAGGTTCTGTTAATCAATATCTTGCTTAATGGTGTGAACTGACTCTTCTTGACCTGTGATTCTAGTTGGATGACATTTATTGTACAGTTCGAACTACAAAGCAAGCTATATTAAAGTTGAAGGTGTAAAAATTGGAAATTTAGAGGTCTGGTGGAATTTGTATATTAAAATTCTTTTTTCTTTTAAGAAAGAGTTCTAGGATTTGTGGTAGTATAGACTATAGAGCTTTTAATTGGTTATTTTATTTTCAATAGGTCAAATGTGCTGCTTTAGCAACTTTCACTAAGACTTGGTGTATATCGATAAAATTGTTTTAGAAGAAGATAAGTTAACTATTGCTGATTTATTTAACTTGAATTTGTTTTTTTGCTGATACTTTTCCTGCCTCTTTGCTGTCAAACATGATTTCTGCATTTTTGCACCATATTCTATGTATCAGTTTTTTTTCTTTTGCTACTTTGCACCATATTCTCTGATTCCTTATTTTAAATTTGGTACAGACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAGGTAAGCAGTTGGTTTCTATTAGTGTCCCTTTTAATTGTAGCCAGATGTTACTGGATCCTTATTTTCTCTTCTTTTTTTTTTCTCAGGAAGCTGTAGAGTTTTGCTCGTTATCCATTCAAGTAAGTTTTCTTCTTTATTGAAGTTCATGTATTCTGTTCTGCTGATTATGCTGTTAAAATTTGTAATCTTGTATTATTCATATTTTTTTGTTCAATATGCTGTTTGTTATTGCTGAACTTCTAATTCCTTCAGAAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTGGTGAGTATTGAGTATCTGCCATTTATGCTGGTATTCATTTTTTCGTTGTCCACCACTTTTCTGCTGCAGATGTATATTTCTTTAATAATTTCATTATCACACTTGGAGAAGAAGCTCTTTTTGGATATATTTTTGGTTTGTTATAAAGGCAGAGTTTACTAGTGAAAGAATGGAGATGGGTTATTCTTTGTTAGCTCTTGTTATAAGACTTACTAGTGAGAGGGGAAGATACTTACCCCACGACTCTATTTAGATTCCTAGAGCTTCGAGGAAGGTGTGTTTCTTTGTATGGTTGGTGGGAAGGGGTGCGGTCTTAAAAGCGGCAAATTTGAGGAGGATCACCTTTGTTAGTTGGTGCGTTATGGGTAAGTGTGCATGAGAAAAACAATGTGTCTAATCGGTCATGGAGGGTGGCCGTCAACTTGTTTAGGATGCAATGGGTGATGTCAGGCATAGTGAAGGAGGCATGACAAAGTTAGATGTCGGGCACAATGAAGGATGCTTTACAAAGCTGGACTCATAAGAGGGGGAAGAGAAACTTTAGGGCATACAGTGTTGCCCGTTTAGCAATCATGTGGGTCATTTGGAAAGGGAGAAATAGGAGGGCATGCAAAGGAGTGGAGCAAGACTCGTATAATTGCAGAGTAGCGTTTTGTCTCTAGTTTCTCTTTTGGTGTACTTTCGAGGTCCCTATTTGCATAGAGGATTGAATCTCTTATGTTGAGAACCATATTTTGATCTAGGCTCTCTTCTTTTGATATACGGCTTGTATACGGGCTACTACCCCCGTTTGTTAACAAAATGATTTACCTTCTCAAAAAGAATAATTCTATCATTTTATAGTGAAACGGACCATCAGTTTAAGCCTTCAAATCTGAGCTTTGAAACTGTGCGTAACTGATCCTCGGGGATTCTCGGTTATAATCAAATGATTATCTAATCACATCTCAGCCATTGAGCAGCTCCTATTCTGTAGTGGAATGGACCATCAGTTTAAGCCTTCAAATCTCATGCTACATGTGTCCAATTTCTTAGCTATACAATGTTTGATTGACTGTTAGATTGTAAGAGTTACTTTTATAAATTTTCAGGAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAGGTACCTGATCCACTTATTTTACAGTAGTTTTTACTTGAGTAGCTATTTTTATCAAAGGATTGTCGTTATTTTTATTAAACGTTCCCGTCTAATTAAAAAAAGATTAAATCTACATGCATTTTGGTTGACTCTTCTGTATGAACGATAATCACTTAATTGTAATGTCAAAAACAATTATCACTTAATTAATCACTCTACACCTGAATTCAAACTTGTTATTATTAACAGTCGTCATAATATGATAACTCTCTTACGGACCATTAACCTGCATCACACTCCTGGTTTATCCATACTTGGGAGCAGTTTTGCTCAAAAGGTTATTTCACATAGGTGAATTTCAGTATAAAGAATTGTTCATTTCACTTTTTTGTTCTGCAATCTGTTCCACAGTTCTTTGCTTAGTGATACCATAGATTGGTAAACAACTGGAGGGCATTGAATAGCATACTAATGTCGAATACCATAGTTCATCACCATCCAAATTAAAAAGAAAAAAAAAAAGACATCTAGGAAGCATGTTTTTTCAAGCTCTGAACAGTGAGTGGCAATACATTGTACACTAAGAGCTGTGTTGATCTTTGTTTAGCATTACCTGACTGATTCATGCTGATAATGATTAATGATGTCTGAGAACCCTTGATTTAAGTCCTTTTTAAATTGCTAGATTGTTATTGGCCACATGCTTAGAAAATTTGTGCTTCCTCGTTGTCACGACTCAACCCACAGGGCCGTGCAGGCACTTACTCTAACACCTAGATAGGAGAACCCTTACCCCAAAACTGAAACATGAAATGCGGGAAGTGAACAATTATAGGCTAAACACCTTATTTAAATATGGCAGTGCTCAAACTTAGTTAAAAAACAAGTATCTTTGTCCAGAATTAAATTGAGCCCACCCAAGGAACTAGTCTAAACATTTACAAGGGCTTCTAAAGAGTACAAATTATGAAAGAAATAAGAAACAACTCCCACCATAAGGAAAGAAAAGTGGAAGCTGTCAGAGATCATTATCGTCTTCTCCGATGAAACTTCACTGAAACCTGCAACCAGACTATGCCAAGTGACATAGCAAGAGTAGTATCAGTTCATACAACACATACTAGTAGGCATCATCAGTCAATCTGAATCCCACATAATATCATGCAAATAATCAAAGAACCATGAAACTTGGAGATATAATTAGGACCCCGACCCTTCAATCATCACCTTTGCTACCAAGCAATGCTACCCTGGAACTCATACGCTCTATCCCAAGTCACGCACCTCCTTCCGCTGCCAAATCTACCATCTAAGCCCTTTCCCCCCTCATATCAGATCATTACCTAACACTTCTATTAGATAGACTTTCCAAACCACTCATTCGACCAACACCAGAATTCCTCTACTATTTCCATTCCTGAATCCAAGTCCACTACTAACTCTGTTAACCGTTCTACTACTCTCCCTCAAGCTCTCATGCCAACACCCTATCCCTTGACCAATTTAGTAAAGCACCTGCAAAACCCCTACTAAACCACCTTGATTGAAATCCCCTTTATCAGATGACAAAACCGTGCAAACTAGTGCATAAGCAAAATTCTCCGTCAACATCCTGACTTAACAACCACCCGAGACATGTACCTATACTTGATTCATCATACCTTTAGAGTAACCCGAACCACAAAGGATCCCTAAGACATCATTTATAGTGTTTAACATGCAATCCCGGTTTAAATTTTTTTGAGTTCATTCGTAAGACGTGTGTGTCTACTTATTCAACTGTATACAACTTTAAGTGCTTACTTGTGCACACTCAAAGCCGACATAGATATCAACTAAGGCCAAGTAAAGAGCACATTTATATATTATAACTTTGTTTTTATTGTTCTTTTCCTGTCAATTTTCTTAGTTATTCATTAGCTCTATAATCTCTTTTTTTGATAAATCAAATAAATTATCTCAACTTATGCCAAATCAGAATTCCATTAACATTATTTGTGAAATTCCTGGATGCATCCATTGCAATTTATGCATTCTCAAGATCATACAAAGATCTTAAAATTGGCTTTGAACTGGTATTCTATCCCAATTGTTCTGTACAGAGTTTTATTTTCTTCACCATAGTTCTATGGGCTAATAATTCGGATGCCCCTTCCTTTTCTTTTGTCATCATAGTTATTAAGTTGGAGGTTTGGATACGTCCAGAGTCTAAAGAATTATGGTTAAGTAAGCCAAGACTGAACACTTGGAGTCCAAGTTCAGTGATGTGACACATGATTCCGACGGAGAAGTGATGCTTAATTGACATGTCATCCAAAAGAGAGGTAGTTTCAAGTATCTTGGGTCTATTATCTTGGGGATTTGAGAGATCAGCGAGGATGTCACTCACCATATTGGTGTTGGATGGACGAAATAGAGGCTCACATCTGAAGTCTTTTGTGAAAAAAAAGTGCCACCTAAAGTTAAAGGCAAAATCTATAGAGTGGTGGTTAGAGTTAGACCAACTATGTTGTATCATCTATGGGGTAGAGTAGTGGCCAGTCAAGAATTCTCACATTCAGAAGATCAAAGTGTCGGAGATGAGGATGTCGCAATGGATGTGCAGGTATACTAGGTTAGATGAGATTAAAAATGAGGATATTCAAGACAAGGTGAGAGTGACTTTGTTGGAAGACAAGATGTCGGAAGCAAGGTTGAGATGGTTAGGACATGTGATGAGGAGATGTGTGGATACCCCATTGTGAAGGTGCGAGAGGTTGGGTATGAATCGATTCGTGAGAGATAGTGGGTAGACCGAACAAGTATTGTGAAAAGCGATCAGACATGATATGGTGCAGTTGCATCTTACCGAAGACATGACCTTAGATAGGAAGGTATCGAGGACACGGATTGGGGTAGAAAGTTAGTATGACGGAGTACATCCATACTGGTAGGTAGGAGTGTGTTGTCTTGTTGCCCTTATCAGTAGTTGTAGTACTACTCTTTTAGTTTCTTGTTCGTTATTTTCTTTTACTATCTATTGTTTCGTGTAGTTTGATTATAATATTATTTTATGGAAGTACTGTTCTGCTTCTTTCAGTTGTTTTTGTTACCGTATATTGTCTCTCGTATGTTTCCATTACGTTTTCTCTAAACTGTTTTTGTCTTGTGTTGAGGGTTTATTGGAAACTGCCTCTCTACCTCACATCTGAGGTAGAATTAAGGTTTGCGTATAGTCTACCCTCCTCACACCTCACTTTGTGGGACTACACTAGGTATATTGTTGTAGTTTCAAAGTTAGGTATGCGTAGAAGAGTGGTAAAACAGGCTTACGTTCGCCTCTTTGTCCAGTTATGCTTGACGATTTGTTATCCTTCCTTTCTTATTTTACATTCGGCTTGCCCTCTTCCTTCTTTGAAACAAGGGTATCGACATTAACATTGAAAGATGCGACTTTTTCAACCCTCATCATTGGAAAAAGTTGGGCAGGGTATGAATGATGAATACAAGATTTTTGAAGTTCAATTTGTAAAAAGCTTCTTTGAATGCAGGAATTGGAGAAAAGCCTGAAAACTACTTGCGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAGGTTAGTTCTGTTTTCCATTTTCATCTTTTGTTGTTTTCTTTATTTGTAGGAGCAATCTTTCAACATGTTCAAGAGGAATTAGGTGTTGACAGAGTGGAAGGAAACATTGTGGTGTATGGAAGGAAGAATAGGGAGAGGGAAAAGGAAAAGGAGGGGTAGGAAATGAAGATAGGAGGAACTAAAAAGATGTGATCTATGGATATTAGGATAAATAATTGAAATATGAGAGGGATGATGACCTGAACAAAAGGGTCATCATCAAGATAGGCATAAGAAAATGGGGGTAAATCTACCCCCCTTTTAGAAACTGAAATGGAGGTGTCAGATAGTATTGTGAGAAGTGTGCGGTGTTAAGGGGGTAGGTAGAACGTTGGAGGAATGACAGGAAATTAGAGATTGTGGAGGATAAGAATAGTGAGTTTATGTTAGCATCTCAGTTTAGATATACTGGAAATGGGATGGATGCAGTGGGGATTTCGAGGAGGTGGTTATGGTCTGTGGGAGGGGTCTAAGGAGAATTTTTGGGAAGTAGCTCTTTACCTGTCTCCTTTATTTTATAGAAATTTGGTACTCCAACGAGATGGTTAAAAACTCAAGAGCTGCAAAATATTGGACAAACTGAAACAACAACAGCATACCCAATGAATCCCACAAGTGGGGTCTGGGAGGGTAGAGTGTACGTAGTCGAGGTAGAGAGGCTGTTTCCGATAGACCCTCGACTCAAGTGTAGCAATTTTAGGATTAAAGAAGAAGAAGACTCTGACAAAAACATAACAACTAATAGGAGAAGCAGTGCAAAGCCTACAGAAAAAAATATGAACAGCCACTGAGTAGTGCAGTAGCCGCAACATAATAAACAGATGAAGATAGATATCAAAAACTAGAACTAACAAGAATAGGGCTAGTACCACGACAAACACCACTAGCCTGAACTCTCGAAAGCAAGGCAACACTCCACTACCTACCAACCTTCTGCCCTAATACACGACCTCCACACCCTCCTATCTATGGCCATGTCCTCAGTAATCTAGAGCTGCGCTATGTCCTCTCTAATCACTCCTATCCTATGCTTTTTCAGGCTACTTCTACTTCTCCTTGTGCCTGCTACATCCAACACAACCTTTAAAATTCAAGGATGATGGAACCGCGCTCTACCCTTTCCCACTTAAATACTGGACTTAGTTCACTTGGGTTAGGGCTCAAACTTATAATGTAAGACACAAGCCCCTCAACCTTTGAGCTAACCCCTTTGAAATTTTACATAGTCATCACTATATCATGTATAACACAAAGACACACCAACATGAAATCTATAATTTAGGTAACTAGCTACAATACCACCTGTTATCTATAATTCAGGTAACTAGCTACAAATACCATCAATTATGTAATTAAATGATGCTGATTCCTTAGTAGACATCATAAAATCCTTGAAAAATGAAATAGGACATACTGTTGCTTTTTTGAGAATCTGGAAATATGGCTACTATCATAGCCTTTTTGCTGATTTTCAATATGTGACCCTCTTTTTTACAAAAACCATAAGTGCTTTGACCCGCACTGTCTCTATTGAGTCATTAACATTGGTATTTGACCTGAGACGTATTACTGATGGACATGGGAAGCAGAAATAGGACTTGTATCAAGGTCTGAATGCATCGTGAGCTTAAGTGTTAGAGTTGAAATCTAATGTTTTTATGACCTTGTAGATTTGTTCATTTCCTTATGAATCTTCTTTTTGAAGATTTTAACTGTTAGGTATTAAATGTCTTATAGGTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTTCAGAAGGTAAACAGATAGATAAGCTTATCTTTTGTTGAAATAAAGAAAAAACCTTTGTGCAAGACTGATTTTGTTTTACACAAATTGCTGAATGAACCAAAATAATCAAACCAATCAATTTACTGGTCGACAAACATCATGCCTGCTGATCATTTGTTATTCAATCTGTTTTTCCCTCTCTTTTGACCTACATGCTGATTCATATTTGGCACAGGTCAACACAGCAATAGATGAAGATTTGCCTAGGGT</genome_strand>
        <mrna_strand>CCATTAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG......................................................................................GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA.....................................................................................................................................AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG.............................................................................ATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGAGAAAAGCCTGAAAACTACTTGTGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTTCAGAAG................................................................................................................................................................................................................GTCAACACAGCAATAGATGAACATTTGCCTAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599402" ref_strand="+" ref_description="SGN-U599402 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aactcttctcatcttgttctctacgactatggatgtcattttatttataccaaaagaggataaagaacaaaggggagtatagttatatattggccttttggaatcttacaaaggatgatatttcaaatggattgtgaaaaaaaatgtttattgtgttttggttattgcactattttgttgttgttattgttccttttatgaatgctttgtgctttccttattatttgccatattttcttcaatgtcattttccatttcataactacttggtttagctgcataagagcctagggtccatcggaaacaacctttctatctcaacgaggtaaggtcgcgtatactctaccctctctagatcccacttgtggaatttcactttgttgttgttggattgtgaaaaagatggccctctgggaggaggaaactcaaattaggaatcaaaacaatgatgtcaccgctacacttgcatattttggccttgtattgcataaagcaaaaacagctgtccaccatatatggagataaggcatacactttgaaattagaaagacaaaaccatagttttcagtgataactttactataaggtggatcagttctgaacaatacaaataaaatgaccctgcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="58505" stop="59737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58805" g_stop="59437" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U599402" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58805" e_stop="59437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCTCATCTTGTTCTCTACGACTATGGATGTCATTTTATTTATACCAAAAGAGGATAAAGAACAAAGGGGAGTATAGTTATATATTGGCCTTTTGGAATCTTACAAAGGATGATATTTCAAATGGATTGTGAAAAAAAAAATGTTTATTTGTGTTTTGGTTATTGCACTATTTTGTTGTTGTTATTGTTCCTTTGATGAATGCTTTGTGCTTTCCTTATTATTTACCATATTTTCTTCAATGTCATTTTCCATTTCATAACTACTTTGTTTAGCTGCATAAGAGCCTAGGGTCCATCGGAAACAACCTTTCTATCTCAACGAGGTAAGGTCGCGTATACTCTACCCTCTCTAGATCCCACTTGTGGAATTTC-CTTTGTTGTTGTTGGATTGTGAAAAAGATGGCCCTCTGGGAGGAGGAAACTCAAATTAGGAATCAAAACAATGATGTCACCACTACACTTGCATATTTTGGCCTTGTATTGCATAAAGCAAAAACAGCTGTCCACCATATATGGAGATAAGGCATATACTTTGAAATTAGAAAGACAAAACCATAGTTTTCAGTGATAACTTTACTATAAGGTGGATCAGTTTTGAACAATACAAATAAAATGACCCTGCATATTG</genome_strand>
        <mrna_strand>AACTCTTCTCATCTTGTTCTCTACGACTATGGATGTCATTTTATTTATACCAAAAGAGGATAAAGAACAAAGGGGAGTATAGTTATATATTGGCCTTTTGGAATCTTACAAAGGATGATATTTCAAATGGATTGTG--AAAAAAAATGTTTA-TTGTGTTTTGGTTATTGCACTATTTTGTTGTTGTTATTGTTCCTTTTATGAATGCTTTGTGCTTTCCTTATTATTTGCCATATTTTCTTCAATGTCATTTTCCATTTCATAACTACTTGGTTTAGCTGCATAAGAGCCTAGGGTCCATCGGAAACAACCTTTCTATCTCAACGAGGTAAGGTCGCGTATACTCTACCCTCTCTAGATCCCACTTGTGGAATTTCACTTTGTTGTTGTTGGATTGTGAAAAAGATGGCCCTCTGGGAGGAGGAAACTCAAATTAGGAATCAAAACAATGATGTCACCGCTACACTTGCATATTTTGGCCTTGTATTGCATAAAGCAAAAACAGCTGTCCACCATATATGGAGATAAGGCATACACTTTGAAATTAGAAAGACAAAACCATAGTTTTCAGTGATAACTTTACTATAAGGTGGATCAGTTCTGAACAATACAAATAAAATGACCCTGCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602705" ref_strand="+" ref_description="SGN-U602705 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345903|emb|CAO15418.1| (e_value=7e-29) unnamed; (*ATH) AT1G10850.1 (e_value=2e-28) |; (*SWP) sp|Q93Y06|Y5720_ARATH (e_value=4e-18) Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200; ">
      <seq>cttttcttctaagtgaagttgtgatgatgcagtgaaaggcattgaaagtgagttgctttgtgaggccattagaccatttcaggcactaaatcacctatggcagagctaaaggcacacctaagtttttttttctgaaatgaacacaacgtggaaggctctattgtaacaacatacccagtgtaatcacaaaaagtggggtttgggcagggatagagtatatgcagacgttacccctaccttggaggtaaagaggtagtttcaatagaccttcggttcgaggaaaaacaattcaaagcagttcggatggaaggtgctttatgcatctagcaattgtatactcgggacaagggctaatagtggttcaaagcctcttcactggacttcctgtctcaaaattgcagaggatgtggcaactggattgcttcatatccatcagaaccctggtctgactcatggaaacttgaaatcatcaaatgtactcttgggggccgattttgagtcgtgtcttacagattatggcctcatgccatttaggaatctagattctcctgaggaatcaggtgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="59731" stop="61143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60031" g_stop="60371" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60372" i_stop="60615" i_length="244">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60616" g_stop="60843" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="569" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U602705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60031" e_stop="60371"/>
          <exon e_start="60616" e_stop="60843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCGGTATGCAAGTACCACCTTAAATAGTGTGTTACCTTTCATGCGGTTTTATCTTGTTACTAGTCATTGTAAGACCACATCTGATATTTAATACATGGGGGTGCCAATCGAATATTTGAAGACAACATATTCAAAGTTAGCTGGGACTCTTATTTTCATGTATCTGAACAGCCAATATGTTTTGTTATTCAAATAATATTCCAGATGATAACTAAGTTATATTGTTACGGTTTGTCAACTTTTTCAGGGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</genome_strand>
        <mrna_strand>CTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCG....................................................................................................................................................................................................................................................GGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598942" ref_strand="+" ref_description="SGN-U598942 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggaagatggtgagatactgtgcaaagcttgccaagagatgaacatttgagcatatgagtttgtactatacttgtggaagccccgaataacgtgtcctgattcttttgaaaggcagaagttacttcgtaggttaagcattcatcgatgtatctgagttctcagggatttgttgattcatttcttgtaaagtctcaaggactttctacttttcttgctttttctaggtttagctgtttgtatgtaggaaatttgcttttataccacttggattgacattcactagtttatgatacattcatgattcaaaagttgtcatcatgttttgtgagagatgtaattgtn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="60918" stop="61858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61217" g_stop="61559" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U598942" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61217" e_stop="61559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGATGGTCAGATACTGTACAAAGCTTGCCAAGAGATGAACATTTGAGCATATGAGTTTGTACTATACTTGTGGAAGCCCCGAATAACGTGTCCTGATTCTTTTGAAAGGCAGAAGTTACTTCGTAAGTTAAGCATTCATCGATGTATCTGAGTTCTCAGGGATTTGTTGATTCAGTTCTTGTAAAGTCTCAAGGACTTTCTACTTTTCTTGCTTTTTCTAGGTTTAGCTGTTTGTATGTAGGAAATTTGCTTTTATACCACTTGGATTGACATTCACTAGTTTATGATACATTCATGATTCAAAAGTTGTCATCATGTTTTGTGAGAGATGTAATTGTA</genome_strand>
        <mrna_strand>GGGAAGATGGTGAGATACTGTGCAAAGCTTGCCAAGAGATGAACATTTGAGCATATGAGTTTGTACTATACTTGTGGAAGCCCCGAATAACGTGTCCTGATTCTTTTGAAAGGCAGAAGTTACTTCGTAGGTTAAGCATTCATCGATGTATCTGAGTTCTCAGGGATTTGTTGATTCATTTCTTGTAAAGTCTCAAGGACTTTCTACTTTTCTTGCTTTTTCTAGGTTTAGCTGTTTGTATGTAGGAAATTTGCTTTTATACCACTTGGATTGACATTCACTAGTTTATGATACATTCATGATTCAAAAGTTGTCATCATGTTTTGTGAGAGATGTAATTGTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582373" ref_strand="+" ref_description="SGN-U582373 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345893|emb|CAO15408.1| (e_value=1e-57) unnamed; (*ATH) AT1G60860.1 (e_value=7e-56) | Symbol: None | ARF GTPase-activating domain-containing protein | chr1:22404909-22411304 REVERSE | Aliases: F23C21.2, F23C21_2; (*SWP) sp|Q5W7F2|VAN3_ARATH (e_value=3e-48) Protein VASCULAR NETWORK 3 OS=Arabidopsis thaliana GN=VAN3; ">
      <seq>ggccactatgaagatctgattcaaagtttttttcttcttcttcatttgggaaagtatagtaagaatcatagagagaaaaaaaattgaggaaaaaaacgaaagagaaattatgtcaatggctgcgtttattaagctggaggattctcctatgtttcagaaacaagtgaggggtcttgaacagactacagatgaccttagagatcgatgtcaaaagctgtataaaggatgtaagaagtatatggaagttcttggagaaacacagaatggagacatcatgtttgccgaatcattagaggcatttggtggtggtctggacgaccctctcagtgtgtcccttggaggtccaatcataatgaagtttatctctgcattgcgtgagcttgctacatacaaggaacttatccgttcccaagtagaacatgtgctggtggatcgtgtgtgccagtttttgtctgatgatttgcgggatgtaaaggaatcccgtcgcaggtttgataaagctgcatccacttatgaccaggcacgtgaaaggttttcttctctgaagaagaatgcacgggatgaagttgttactgaacttgaagaagtaagccctttctctgaaaaaggttatctttgtggattgttcatcctcttatgtgtatctctctatctgcctaacttgatgaggtgtaacctaacacaaactgataaatgttgcaaaaattaccaaccaaaagtgattggtatcctgattgttatgtgttcaaataaaattatgtcctaaagaatctcaaaattttggtctgctttaggtcttttcttataggatccctctgaggaatcatttacatgcttgtttttcctttgaggaaaaaaaatgaggtgaaagggtgttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="64067" stop="70647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64366" g_stop="64529" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64530" i_stop="64663" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64664" g_stop="64740" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="240" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64741" i_stop="65338" i_length="598">
            <donor d_prob="0.435" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65339" g_stop="65439" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="341" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65440" i_stop="68046" i_length="2607">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68047" g_stop="68117" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68118" i_stop="69404" i_length="1287">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69405" g_stop="69467" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="475" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69468" i_stop="69795" i_length="328">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69796" g_stop="69840" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="520" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69841" i_stop="69987" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69988" g_stop="70347" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="883" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U582373" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64366" e_stop="64529"/>
          <exon e_start="64664" e_stop="64740"/>
          <exon e_start="65339" e_stop="65439"/>
          <exon e_start="68047" e_stop="68117"/>
          <exon e_start="69405" e_stop="69467"/>
          <exon e_start="69796" e_stop="69840"/>
          <exon e_start="69988" e_stop="70347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGAGAAAGTATAGTAAGAATCTTAGAGATAAAAAGAAAATTGAGGAAAAAAACGAAAGAGAAA-TATGTCAATGGCTGCTTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAAGTAACTTTTCTTTTGATCCCCTTTTCATTTTTATGTTTTTTTGAATCTTTTTGAAAAATTGCTTTCTGGGTTTTGATGTTTGAGGAATTTTGTATCAATTTTTGTTTTTGAAATTAAAATTTGTTGCTTTGTAGGTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATATGTGAGTACTCAATTTTATCATTTTATTTGGTGTAATAGCTTATCTTTACTGTAATTACCTCTAATGACTTAAAAAGGTGGAATCTTTGGGGCATTTAACTACATTTCAATCAAAATTAATGTAGTTTGCTATATGAATTTTGCTCTTTTTTTTTGTAACTGTAATGTCGGACCAATTTGCGCGCACCTTGACTAATTCAAGATAGCCCTGTCACCTCCCACCAAGAACGGTCGGGAAGAAACACCTAGTATTTTTTTTTGTTTGGTCTTTGTTGGGGTTTGAAGCTGACCTCATGGATCTTAACTCACTTCATTGACTACGAGGCCACACCCTTGGGTACATTCTGTTCTCTATAGGTCCATTTTGTTTTAATACTAAAGAATTTGTCTTTCATTCTCTAAAAGCTGTAAGTTTGTAGTCAATGATCATTCATCTTTCTCTCTCACTGACACGTGATACGTTCTTCCCCTTTCTATGCGTTGGCAATTTTGTCGTTCTGCAGAATATATCATTCTCTTGTTTTGTTTGAAAGTTCTGGTTTCTTCATCTGCATTTATTTGTTTAGGTAGATGCTATTCTTGATGCTTAGTTATTTCAGGGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAGGTTAGTTGGCTTTACTCATTCAAACTATTACAAGGTTCTCATTTTTGCTAATTTTATTTGCAATTGTCAATAGGTGCATCATGCCTGCTGTTTATTTTGTTGAAGGTGTTTTTCTTTTATTCTCTTCAATGTTAATGCTTGATTTTGGAATTCTCATATAAATGATCACCTCGAAGATCACACTAAGTTTGGATTTTTTTAATTTTTTCTTTTTGAGGAAGGTAACAATTGTATTTCTATCAAACAAAACTTAGACACCCCAAAAGTGGCATTAAGTTTGGAATTCTCATATAAATGTTATTCTTCTCTAAGGTGGTATGTTCCCTAAAGGAATTCACAGCTTTCTTAATTGCTTAATGGATAACATCTCGGTCTTCTAGGGAGATGCTGAGTCAATATTGAGGTCAGGCTAGATAGTTAAAGCCTGAAAGTTGTCAGCTAGTGCTCTTATATGGATGTTGTTGAGAAGGTAACGTTGAAAAGCAGCCTGATAGTTGTCAGCTAGTGCTCTTATATGGATGTTTTTGAGAAGGCAACATTGTAAAACCTTTCACGTTGTTAAAAATCTCCATAAGATGTCTTTGAGAAGCACATATTTGTTTCTCTTTTTCCCTCTCACTGGTTTATTTTTTGTTTTCCCTCTTTATGGGTGTGGTATGGGATGGAAGTGTTCAAGACGTGCCAAGTCATATAGATGATTGGATGAGGTTTGCATGACTTGTATTTCTGTAGACTGCTTGTTGGTATGTCATGGAGTGGTAAAAACATCTTTTCCAATCATATTATGCAAGGTCAAACTATTTGACATGTTAGTTAAGGGAAATGAGCAATCAGGGGTTAAGGTCTTCTCTCACCTTAATTACAAGCTAACCACACAGCTTCCCAACTCATTATCGTGCTGAACTCCGTTAAATGCCTCCTATCAACATAAAATATATCCATTTGATTCATCTCTCCAAATTGAGTCTTGGACAAAAGTCAAAGTCATCCATTGTGCGATCAAATTGATGGACCAGATATATTTTCAGATTACCATAACTTTCTAAATCCAAATATATTATTAGTTCTCCATCGAAGTCCTTGAAGTGGATCAAATGCTCAAGTTACTAATTTGAGGTTTTAGGGCTCAATCCATGTATTTCTAAGTTCAAATCCTTCAAATAAATCCATTTTCTGTCGTAATATCATCATCTAAACAAAAATGCTTCATTTAAAATCTTAGATATTGATCTCCATATCTAATATAGTAGTCAAAGAGAACACATAGGTACGAAAGAGCTAATAGTGAACTATTGGTGATTCAGGATTCTACATTAGTAAGAAAATCTCTAGGTTCTCTTCTTTCATATAGTGTAAAGAGCCAAATCAATTGCTTTTGTGGAATCCTTTCTCATCATTCATTGACATTACTACATGGGTTTTGCTTCACTTTATTATACTCATTCCTCACTTTAAATCTCCAAATCTGGCAACCCACTTCAGAGTGTAGGATCAGTTTGGTTATTTCTTAAAATTCACTATATACCACATTTTAAAGACCCAATAAGCTGTCGCCTGTACCACCTTCTTCGGGGCCTGGATTTATAAATGTACTTCATATAAAATATCACCAAATGCATATTGTCATCAGGAAAGTGCACCAATGCTGCATTCTAGACACCAAACCAAATCTTCTTAATAGGCTATTCAAGACCCCAGTCATTCATCACATTAAACTTCTTTTGTTTGCTCAATTCGTCATCAAAGTCCATATAGTTTGTTGCCTAAAGTCCAAACTTAAACCATTGTGACATGTCATTATAGTAATTCCTTAATATATCACAATTCCAAATCTTCAATTGGTATATTCCATACACATGTTACATGTGCATACATATAACTTGTCAAATTAAGAGCGACTACGCTTAAGAAATAATTTATAAGCCAATTCTAAACTTCTTGGGCTAATTCATGGGGCTACATAACATCAAAGTACATCAAGGGTTAACGAAGAAAATATGTGGTCTAGCCCGAACCCACTATGCAGTGATAGTTCATTCTAATAAATCCCCCATTGCTTGTTTGTCTTACTAAGTTTCGCTTTAATGTGGGTCATTTGGAAAGAGCAAAATAGTAGATCTTTTGAAGGGGTGGAGAGAACTTTGCTTAATTGAGGAGTAGACTCCAATCCCTTATTTTCCTTTGGTGCACCCATGTAGTTCCTGTTTGTATAGAGGATGGTGTGGCTTTTGGTGAGGACCATATTTTGTAGGTTTCTCCTTTTCTGGTATACCTCTTGTATATGGTCATGTTGACCTTGTTATTATCAATGAAAACTTCAACTTGATCAATAAAATAATTCCATGAAGCCTTGTTAAAAAATATCATAAATCGATGAAGTTGTAGTTCTATTTGCAAAATATGCATGCTGATGTGAAATTTCAAGCTGTAGTTCTGGTGTCACTTGATGGAGTTGATATGGCTGTTATTTACTCCATTGATATTTCCAAAGTATGGTTGCCCAATGTAATATGCTAATGTTGTCTCCGTGCTTAGATTGTGAAGCTTATAATTACTTCTATCAAACAATAAGATTATGTATCACTCTTAAATGCATCCATATGTCAGGTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAAGTAAGTGGATGTATTCTAAATCACTATAGTGAGCCTTTTGTAAGAAAATCTGTACTCTTCTATAAAAGCATATTGCTGTGTATGGCACACTGTTCTGTTTTTTTTACTTCAATACCTCCATTATAGTTATTTTCGGTGCACGAAACCTGTGTCAACAACTCATGGAGTGAGATCATGAATGTAGATAAGTCATCGCTGGGATGAGTTACATACTGAAAACAATTCAAGGTGGGTCATAGTAGATAAGATTCTGGTAGGATGCATGGCTGAGACGTAGAGTCGTATACCCTTGAGGAATTACCAGGTCTATACAACTTTGTCTCATATCCTGAAGCAACCATAGCTCAGTGCAAATCTACTAATAGCTGGAATATTAGATTCATGAGGAATTGTTAGGGACTGGGGGAATAACTGGCCATTATCATAGAACATGGTGAAAAAGAAGTTGTTCCTCAAAAAAGACATGGTGAAAAAAGAAGTTACAAAGGTCCCTGGAAAGCTACAGTTACCAGTTCAAATAAAAAGGCCCCTGGAAAGCTACATGGAAAAGCGTGGCACCAACAAAGGTGAAATATTTTTCATGGTTTGTAGTGAGAAAAGCATGTCTAACTCATGAAGCACTTAAGAAGAGGAAATCCAAATAGCATCTAGATGCATCTAAGCATGAAGGCAACTGAAACTAACACTCACATATTCCTTCACTGAAAGGTAACATCCCAAATTTGGGCACTCTTCATTTCTGTGACTAGGGAGAATTGGACAATGCTAGAACACACTGCAAACTTACTAAGCCGCTGGATCAGAAGGGGAGTGAGCAAAAGACAACAAAGGTAGTGGAAAACTGTACCAGCATGCATATGGTGGAATACCATAGTTCTGTAAATCGTTCTCTTGAGCTACATGGGCATAGCAACTTTGCGCTAAGTGGAACCACAATCATTATCATCAAACACCAATCTTCTGTTGTTTTAGTTACACCAATCTTATACACGATTAAGTTCTTGTATAATCACAAACTTGTTAACTAACCAAATAGATACTTCTGAGATGTTCATTAATTTTGTTTCACTTAAATGCCGTCGAAGTGGAGACACCTAAGTAGAAAACTTGGCCTTGCAATTTTTGAACAAGCCATTAGGAGCTTTCGCTGGGATCGCAAAACGAAATTGTTCGGTACCTTCTGTAGTTGGATGTGCTAAGCTTGTCTGATTATGTCGCTCCATTTTATATCAATGTTTATTCTGATATAGTTCTTTGAAAAAGTAAGGCAAGTTATTCCTTTTGCAGGTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAGGTGATCAAATTTGGCATTATTTCAATATTGTTGTGGAAATCTAGATTAAGCTCTCTCTATGTTTGCGTTAATAGAATTAGGTAGCTGTTTTATTTTTTTTGATAAGGCAAGCAATTTTATAAACAATGGAATACCCCAATATACAAGTTGAATACCAAATTGTAGAGAACCTACAACAAAACATGGCTACAGAACACCAATCCACTGTACTTGGTGCCAGCCTAACTTGGCTGTAATTCTGTCAAATGGGTGCCTTTTAGTGGATTTTGACATACAAGGGTTGGTACTTTAATGTCATGTGTCTGATGACTCGTCGCTAATTTTGCAGGAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAGGTAATGGAGATGTTTCAATAGAAACAAGTTTAAAGCTGCTTTTTTAAATGCTAAGCAGACTTTATGTGCAAAATTCTGTTCATTTGGAAGATAACACTTCCAGTTCTTTTTGTTATTAATTTCACTCCTGAGTTGCTAAACTGCCAGGCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTG-TTTTCC-TTGAGGAAAAAAAATGAGGTGAAA-GGTGTTGCTTTG</genome_strand>
        <mrna_strand>GGCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGGGAAAGTATAGTAAGAATCATAGAGAGAAAAA-AA-ATTGAGGAAAAAAACGAAAGAGAAATTATGTCAATGGCTGCGTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAA......................................................................................................................................GTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAG........................................................................................................................................................................................................................................................................................................................................GAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAG...................................................................................................................................................GCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTGTTTTTCCTTTGAGGAAAAAAAATGAGGTGAAAGGGTGTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599426" ref_strand="+" ref_description="SGN-U599426 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345893|emb|CAO15408.1| (e_value=1e-27) unnamed; (*ATH) AT1G10870.1 (e_value=3e-28) | Symbol: None | ARF GTPase-activating domain-containing protein | chr1:3616610-3623757 REVERSE | Aliases: T19D16.20, T19D16_20; (*SWP) sp|Q5W7F2|VAN3_ARATH (e_value=8e-20) Protein VASCULAR NETWORK 3 OS=Arabidopsis thaliana GN=VAN3; ">
      <seq>gttaaaaaaaaaaaagaagaaactcagcctcatgcttttggtaaacacatcttcccctcttcttttgcgtgtgtgtgttttctggttgttgtaaaatgaccttcacaaaagaaagaatgttgatacatcttcgggtgaagctcgccgaggccaccttattggtagaggctttttcccgaagcatatctcagagcttttacataaatagacattgctcccaagtccagggaacaaattgtgatgaattaatgttgaaggtttcacttatatctcgttctgttttgatgctaacaatgtcctattcaggtttttatgaagtatgtccagccttctgtatccctctgttttatattagtgcttatctgtcaaggaaaacatttgaagtaattaggagtcaaaactgggaattggagttttacagctttttctgtgacaggagcttcataactcaaagtccacttttgagagaagccgtttcaatcttgatttcaggtaaatgctatcacaaatgttgatgccaaaaagaagtacgagttcttagaatcctttagtgctattatggatgcacatctgagatacttcaagctgggtcatgacttattgagccagatggagccgttcatccatcangttttgacatatgcccagcagtcgaaagaacaggccagcatagaacaagataaacttgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="70284" stop="75323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70583" g_stop="71066" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71067" i_stop="71150" i_length="84">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71254" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="588" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71255" i_stop="71335" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71336" g_stop="71377" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="630" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71378" i_stop="74960" i_length="3583">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74961" g_stop="75023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="693" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U599426" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70583" e_stop="71066"/>
          <exon e_start="71151" e_stop="71254"/>
          <exon e_start="71336" e_stop="71377"/>
          <exon e_start="74961" e_stop="75023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTTGTATGTATAATGGATACAAGAATCTTTTCTACACAGCAAGCATTCTTGCCTCAAGATTCTAATTTATAGCCTTGTCGCCTCAAGGATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTGGTATGATGTTCTTTATCTTCTCTTTGATGCAGTTATGTTTCTGTCATTAAACTAACAAATTTTAATACTTGTTGAATGTAGGGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAGGTACCCATCATATGAGTTATTTTTTCCTTATATCGTGATTGACTAGCTACTTACTGGAACGAGGTAGTACCATCATGCTGCCATTGATTCATTTTGGGTTTGACAGTATTGAAATTTAGTTGAAGATAGATTTGTACAAAATCAGCTAGTTGAAAATACAGTTAGGCTATGCTGATTAGTTAGTTAACTGAGTTGAATGGATTAAAGTGTAGTTTAATTAGTCCAGCTGGCATGATTAGTTGTTAGAAAGTAGTTAGTTGGTTAATGCAAAGATGCTTCTTGTATATGTATAAATAGAGCTCCGTTGAGATGAATCAATCACTTAGACAATTCCACAAAAGTATCTTCATACTCTCCAATGGCTTCATGAACAAACACACTCTTTGTATGGAATATGGATTATGACAGACCGACTACTGGTCCTCTCATGCTGCGATTTATTCTTGTTTACTATTTACTTGTTTCTTGAGGATTCTTCATTGTTCCTCTGGTTCCTGGTTGGAATGTGTGTAAATTACATTTAAGGAGATTGATGTTTGCATAAAGTAGCTCACTCATAGCTCTTAGCGGTTCTTGGTTTTGTGCTTGCTTACTATTAGTATACTCTGCCTCATTATCATGAAATTAATTCTTGCCTTAACTAGCCTTAACGTATCAATGAAAGTGAAATTAATATCATGGAATGTGAGGGGGATACATGGGGGTGGTTAGAGGAGCATTGTCAGGAAATTACTATATCTTGGGATGTCAATATGTGTATTCTAGTTGAAACAAAACTAGAAGGGCCACTTAATTTCAAAAAAAAAAACTAGAATGGCCAATTGATGGAGTAATACAGGCTACAGAGTATATGGGATAACAGATGGATGGGAGAATTTCTTAAAGAGGCAATAGGAGCAGTGGGGGAATTGTAGTCCTCTGGGATGAAAGCGTGTGGACAGGAGAAATGGTGGAGGTTGGTGATCAAAGTATTACTTGGAAGTTCACAGGGGTAAATGAGGATTTCAGGTGGCACATTATGCAGTCTATGCAGATTGTAATAAAGAATCAGGAAGACACTGTGGGAGAAATTGTTAGCCATTAAAAGCAGGTATGCTGGGCCATGGATAGTGTAGATGACTTTAATGTCATCAGATTTCCCTCAGAAAGACCAAACTGTATGAGACTTAGTGGTGCAATTGGAGCTGATTGATCCTCCTTTATTTGGGGAATCAGATACTTGTAGGAGGGATTGATAGGTTCCTACATTGCTTGGGTTGTGGGGGGGGGGGGGGGGGGGCTCTCAGATCAAGAAGATGTGCTATAAAGTTAAACTTCAGATCACAATCCTATTGCTTTGACATGTGGGGATCAGGAATGGAAGAAATCCGACTTCAAATTTGAATCGTGGTGGCTGGAAGTGGAGGGTTCAAAGACAGAGTAAAGTGGTGGAATTCTTTCAGTGTTGAAGGAAGAGCAGACTTCATACTAGCTAAAGGCTAAACTGAAAGAGTGGAGCAGGGATAACAAAGGTAACCAGAAACAGAGAAACGAAGGCATTTTGAACCATATAGCAATCTGGGAAAGCACATAGGAACACAGAGTTCTCACTGATGCTGAAGTTCTTCAAAAGATAAATTTGATGAGGTAGCCAAGAATGAGGAGATAGCTTGGAAAGAAAGGTCCAGGATACCATGGTTGAAACATGGTGACAAAAGTCAAAAACACAAAGTTCTTCCATAGAATTGCAACTTCACACAGGAGGTTCAACTCTATGGAACAACTTCATGTGGAAAGAGTCACGGTGAAGTATCCTGTCTTGATCAAAGAGGCATCTCAGAATTTTTACAGGAACTTATACAAAGAGTCTGAACAATGGAGGCCTGATCTTAATATACTGGATGTTACTGTGATTTCTGAGGAACAACAGACCTGGCTACAAAGACCTTTTGAAGAGGATGAAATATAGGAAAGTATTAGAATGTGTGCTATGGAGAAGCCACCTGGTCCAGATGGCTTTCCAATGATCTTCCTTCAGACTTTTTGGAGGTTCTGAAGGGAGACATTTCCACTCAAATCAGAACTTTGGAAAGAGTACCAATGCAACTATATACCTCTAATCCCTAAAAAGGTTGGAGCCTCAGAGCTGAAGGATTATAGGCCAATCAGTCTTACAGGAGGTGTGTACAGGATCATTGCTAAGCTACTGGCAGGAAGGCTTAAGAAGGTGGTGAGCAAATTGGTTGATAATAATCAGATGGCCTTCATAAGCAAGAGTCAAATAATGGATGCTGCTTTGATAGCCAGTGAATGTATCTATTGAAGATGGCACTGCAGATCTACTATGCAAGTTGGACATCCAGAAATCTTAACTGGTCCTTCTTACTAAACATTTTGAAACAAATGAACTTTGGCAGTAAGTTGAAATGGATAGAATTGTGCATCAAAATAGTGAGATTCTCAGTCCTATTAAATGGAGAACCAGTTGGTTATTTTCCTTCAGAAAGAGGACTGAGACAAGGGAACCTTCTAGCAATGGAAGGTTTTGATAGTATGATGAGAATAGCTACACAACATAGATGGATCAGAGGCTTTCATATAGGAGACAAAACTAGGGGATGGGGTGGAAAAGATATTAGTACCTATTATATGCAGATGATACTTTATCATGTGTGAACCAGAGGCAAAACAAATGAACTATATCAGATTGATCTTGATTCTTTTTGAAGCAGTATCAGGCCTAAAGGTCAACTGGGGAGAAAAACAGACTGATTCCTGTCAAAGATGTACATCAGATTCTAAGACTGGCAAATATCTTGGGGTGCAAAATTGATGGATCACCAACCACATACTTGGGTATGCGCTCAGGGAGCAAACAGAAAACACTGGAGATATGGGATGGGATCCCGGAGAAAGCAGAAAAGAAGTTGGCTAGGTGGAAAGCACGATATCTCACTCGGGGATAGAGTGATTCTGATTAATACTGTCTTGGATCCCCCTCCCCCTCTACTTATGTTATGTCTTTTTTTGTCAATTCCTTCAAAAGTTGTCAAAAAGCTGGACAGACTTACAAGAAACATCCTGTGGCAAGGGGGCAAAGAAGGCAAGGGTAATTACCTGGTGAAATGGAATACTGTAATGTTGAGCAAAGGAAAAAGAGCTCTGAAAGGCTGACAATGGACCGAGTTTGGGACCACTGGACCGGGAAATACCAGTCCGGTGGCCCGTAGCCGGTCCGTTGCCAGCCTTAGTCACTGTTAGAATATGGATAGATTTATACAATCCTATTAAAATAGGAATAGGTTTATACAATCCTATTAGAATAGGAGTATGTTTATACAATCCTATTAGAATAGGAATATGTTTATACAATCCTATTAAAATAGGAATACTAAATAGTACCCTGCTTGGTAAAGGATTGTATTCTAGGGTCTATAAATTTGGTCTCAATGTAATAATGTAGGCACAACAACAATTCAATAATACTAAATGGTTGATTTTTGCAGCTGCTTGATTAATGACATTGATTAGAAATTTGAGTTTTTGTTTGATATCTTTCTTCTTTTTGAATATTTTTGGTGCTAATGTTGTCTCCATAAATCAGGTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCAAA</genome_strand>
        <mrna_strand>GTTAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTT....................................................................................GATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTG.................................................................................GGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAN...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="+" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-JC3K4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="88749" stop="89793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89049" g_stop="89470" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-U591120" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89049" e_stop="89470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGTAGATGATCAATTTTTTTCTTCGAATTCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATAT-CCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGCATATCAGCTCCAAATGACAAAGTTGAGGG</genome_strand>
        <mrna_strand>CTTATTGTAGATGACCAA-TTTTTTCTTCGAATACGAAATTAAATTACAATACACACA-AAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3528" PGL_stop="4065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3528" e_stop="4065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3528" e_stop="4065" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3528" stop="4065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATT</gDNA_template>
            <first_frame> K  I  L  Y  I  L  Q  R  H  G  A  K  V  L  L  E  V  G  L  W  K  R  G  I  I  E  H  T  K  S  A  S  C  K  Q  C  L  F  N  P  *  K  Y  A  S  P  M  G  Q  E  I  D  Q  V  W  F  I  I  T  L  M  I  P  S  V  A  Q  L  W  I  T  S  I  M  M  V  I  E  P  S  C  S  *  Q  P  F  R  G  S  I  E  C  Q  R  A  P  P  E  R  G  A  *  V  I  L  *  F  H  S  A  I  G  S  S  S  F  D  G  R  C  N  I  A  F  L  I  *  L  E  L  A  C  S  G  E  G  G  R  T  S  L  F  V  K  K  *  K  L  F  C  S  L  L  L  H  E  F  S  N  W  I  L  V  L  W  M  F  L  L  Y  L  *  Y  I  I  *  Y  T  Y  </first_frame>
            <second_frame>  R  Y  C  T  Y  F  K  G  M  V  L  K  C  Y  W  R  *  D  Y  G  S  A  E  S  L  N  T  Q  N  L  L  H  A  N  S  A  Y  S  I  H  K  N  M  P  L  P  W  D  K  K  L  I  R  S  G  L  S  S  L  *  *  F  L  Q  W  H  S  S  G  L  H  L  *  *  W  L  *  N  L  A  A  L  D  N  H  S  V  V  V  *  N  A  N  E  L  R  L  N  V  A  H  R  *  F  F  D  F  I  L  P  *  E  V  H  H  L  M  A  D  V  I  *  L  S  L  F  N  L  S  *  L  A  V  G  R  E  V  E  L  A  F  L  L  K  S  K  N  Y  F  A  P  F  Y  S  M  S  S  Q  T  G  F  W  F  C  G  C  F  S  Y  I  Y  N  I  *  Y  D  I  H  I </second_frame>
            <third_frame>   D  I  V  H  T  S  K  A  W  C  *  S  V  I  G  G  R  T  M  E  A  R  N  H  *  T  H  K  I  C  F  M  Q  T  V  L  I  Q  S  I  K  I  C  L  S  H  G  T  R  N  *  S  G  L  V  Y  H  H  S  N  D  S  F  S  G  T  A  L  D  Y  I  Y  N  D  G  Y  R  T  *  L  L  L  T  T  I  P  W  *  Y  R  M  P  T  S  S  A  *  T  W  R  I  G  D  S  L  I  S  F  C  H  R  K  F  I  I  *  W  Q  M  *  Y  S  F  P  Y  L  T  *  A  S  L  Q  W  G  G  R  *  N  *  P  F  C  *  K  V  K  I  I  L  L  P  S  T  P  *  V  L  K  L  D  F  G  S  V  D  V  S  L  I  F  I  I  Y  N  M  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13149" PGL_stop="9153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13149" e_stop="12992"/>
            <exon e_start="11430" e_stop="11412"/>
            <exon e_start="10708" e_stop="10479"/>
            <exon e_start="9258" e_stop="9153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.000" e_score="0.943"/>
          <exon-intron don_prob="0.997" acc_prob="0.853" e_score="0.895"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="0.978"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="13149" e_stop="12992" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12991" i_stop="11431" i_length="1561"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="11430" e_stop="11412" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.853">
            <gDNA_intron_boundary i_start="11411" i_stop="10709" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="10708" e_stop="10479" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10478" i_stop="9259" i_length="1220"/>
          </intron>
          <exon e_serial="4" e_score="0.943">
            <gDNA_exon_boundary e_start="9258" e_stop="9153" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="12992"/>
              <exon start="11430" stop="11412"/>
              <exon start="10708" stop="10479"/>
              <exon start="9258" stop="9153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAGTCGGTGTTCGGAACTTTGACATTGATGGTGAACTTTGGGTCAAATTACGTTTAATACAAACAGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAAGATAAAACTTGACTTGTCACCGTTCCGTTTGTTCAACCTAATGG : CAATTCCTGTTCTATCAAT : GTTTTTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCAGAAAGGGAAAACAGTCGGGCCTATTCCAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCAAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATG : GAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTAATACGCAGCAAAAGAAACAGTCAAACTACTGTTATTGGACCTCCTGGAGAGCCTATATGGAA</gDNA_template>
            <first_frame> A  S  R  C  S  E  L  *  H  *  W  *  T  L  G  Q  I  T  F  N  T  N  R  A  L  D  W  S  C  F  L  G  F  C  L  P  S  Q  D  K  T  *  L  V  T  V  P  F  V  Q  P  N  G :   N  S  C  S  I  N  :  V  F  E  E  A  S  Y  *  G  F  T  S  S  L  C  P  S  K  K  N  C  V  G  F  S  E  R  E  N  S  R  A  Y  S  K  *  S  *  V  W  S  E  R  T  T  *  G  W  G  N  A  R  R  K  *  G  L  C  W  R  T  I  S  D  S  C  *  C  K  E  S  L  L  Y  H  L  W :   K  N  *  S  I  C  *  S  K  T  W  R  S  S  N  T  Q  Q  K  K  Q  S  N  Y  C  Y  W  T  S  W  R  A  Y  M  E </first_frame>
            <second_frame>  P  V  G  V  R  N  F  D  I  D  G  E  L  W  V  K  L  R  L  I  Q  T  E  P  W  I  G  A  V  S  W  A  F  V  S  L  P  K  I  K  L  D  L  S  P  F  R  L  F  N  L  M   : A  I  P  V  L  S  M :   F  L  K  K  L  L  T  E  D  L  P  R  L  F  V  R  P  K  K  I  V  L  D  F  Q  K  G  K  T  V  G  P  I  P  S  D  R  K  S  G  Q  S  E  Q  P  K  A  G  E  M  Q  E  G  N  K  D  Y  A  G  E  L  S  V  T  L  V  D  A  R  N  L  S  Y  I  I  Y   : G  K  T  D  P  Y  V  N  L  R  L  G  D  Q  V  I  R  S  K  R  N  S  Q  T  T  V  I  G  P  P  G  E  P  I  W   </second_frame>
            <third_frame>   Q  S  V  F  G  T  L  T  L  M  V  N  F  G  S  N  Y  V  *  Y  K  Q  S  L  G  L  E  L  F  L  G  L  L  S  P  F  P  R  *  N  L  T  C  H  R  S  V  C  S  T  *  W  :  Q  F  L  F  Y  Q   : C  F  *  R  S  F  L  L  R  I  Y  L  V  S  L  S  V  Q  K  K  L  C  W  I  F  R  K  G  K  Q  S  G  L  F  Q  V  I  V  S  L  V  R  A  N  N  L  R  L  G  K  C  K  K  E  I  R  T  M  L  E  N  Y  Q  *  L  L  L  M  Q  G  I  S  L  I  S  S  M  :  E  K  L  I  H  M  L  I  *  D  L  E  I  K  *  Y  A  A  K  E  T  V  K  L  L  L  L  D  L  L  E  S  L  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13148" stop="12992"/>
                    <exon start="11430" stop="11412"/>
                    <exon start="10708" stop="10479"/>
                    <exon start="9258" stop="9155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVGVRNFDIDGELWVKLRLIQTEPWIGAVSWAFVSLPKIKLDLSPFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKIVLDFQKGKTVGPIPSDRKSGQSEQPKAGEMQEGNKDYAGELSVTLVDARNLSYIIYGKTDPYVNLRLGDQVIRSKRNSQTTVIGPPGEPIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14927" PGL_stop="14064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14927" e_stop="14064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="14927" e_stop="14064" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14927" stop="14064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCTTTTTCACTTTCTCTCTCTATCTTTGTTTCTCTCTCTAACACACACACAGAGAGATAGTCTTGTCTACATGCATCCATCTGTGCTGAAAAAACTGGGAATTTCATAGCTTGTAATGTTGTTTTCGGTTCTCTTTGAAAAAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAACAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGTTGGAGAAGGATTTGCAAAGGAA</gDNA_template>
            <first_frame> S  L  F  H  F  L  S  L  S  L  F  L  S  L  T  H  T  Q  R  D  S  L  V  Y  M  H  P  S  V  L  K  K  L  G  I  S  *  L  V  M  L  F  S  V  L  F  E  K  D  K  A  L  S  E  L  G  F  G  F  G  F  M  F  I  G  S  S  L  Y  T  S  S  S  T  T  V  N  Y  S  S  K  G  I  W  V  F  D  I  N  G  F  *  I  S  F  C  Y  Y  P  *  F  P  *  S  I  L  G  I  P  I  S  L  S  M  *  K  *  W  Q  F  V  G  D  E  E  E  E  *  G  E  I  G  F  G  F  E  C  *  V  *  D  S  C  E  M  G  N  S  S  L  C  E  W  W  R  P  P  *  F  *  H  A  D  *  G  *  C  *  K  R  S  *  K  Y  C  N  *  E  I  C  *  *  I  G  C  L  W  K  S  L  *  G  I  R  S  F  *  M  F  *  *  Q  F  C  *  F  S  R  R  P  Y  C  R  *  A  K  D  S  I  G  G  D  A  S  I  T  F  S  S  N  K  S  K  Y  F  R  S  F  C  I  V  F  L  C  W  C  C  F  *  *  G  L  G  I  *  K  E  *  C  *  A  K  Q  W  R  K  L  R  D  M  V  T  G  P  T  K  P  F  F  I  V  G  E  G  F  A  K  E </first_frame>
            <second_frame>  A  F  F  T  F  S  L  Y  L  C  F  S  L  *  H  T  H  R  E  I  V  L  S  T  C  I  H  L  C  *  K  N  W  E  F  H  S  L  *  C  C  F  R  F  S  L  K  K  I  K  L  *  A  N  W  V  L  G  L  D  S  C  L  L  V  V  H  C  I  L  Q  V  Q  Q  L  L  I  I  A  Q  K  A  S  G  F  L  I  L  M  V  F  E  S  V  S  A  I  T  P  D  F  R  K  V  F  W  V  Y  P  S  P  C  P  C  K  S  N  G  S  S  S  V  T  R  R  R  S  R  G  K  L  G  L  D  S  S  V  R  Y  R  I  R  A  K  W  V  I  R  A  C  V  N  G  G  D  H  H  S  F  D  M  Q  I  R  D  S  A  R  R  G  A  R  N  I  V  I  K  R  F  A  D  E  L  D  A  Y  G  R  V  S  E  E  L  E  A  S  R  C  S  S  N  N  F  A  S  F  Q  E  D  P  I  V  D  K  L  R  T  Q  L  G  V  M  H  P  L  P  S  P  P  I  N  R  N  I  F  G  L  F  A  L  F  F  F  V  G  V  V  F  D  K  V  W  A  S  R  K  S  N  A  K  P  N  N  G  G  N  S  G  I  W  S  Q  V  P  P  N  L  S  S  L  L  E  K  D  L  Q  R   </second_frame>
            <third_frame>   P  F  S  L  S  L  S  I  F  V  S  L  S  N  T  H  T  E  R  *  S  C  L  H  A  S  I  C  A  E  K  T  G  N  F  I  A  C  N  V  V  F  G  S  L  *  K  R  *  S  F  E  R  I  G  F  W  V  W  I  H  V  Y  W  *  F  I  V  Y  F  K  F  N  N  C  *  L  *  L  K  R  H  L  G  F  *  Y  *  W  F  L  N  Q  F  L  L  L  P  L  I  S  V  K  Y  F  G  Y  T  H  L  L  V  H  V  K  V  M  A  V  R  R  *  R  G  G  G  V  G  G  N  W  V  W  I  R  V  L  G  I  G  F  V  R  N  G  *  F  E  L  V  *  M  V  E  T  T  I  V  L  T  C  R  L  G  I  V  L  E  E  E  L  E  I  L  *  L  R  D  L  L  M  N  W  M  L  M  E  E  S  L  R  N  *  K  L  L  D  V  L  V  T  I  L  L  V  F  K  K  T  L  L  *  I  S  *  G  L  N  W  G  *  C  I  H  Y  L  L  L  Q  *  I  E  I  F  S  V  F  L  H  C  F  S  L  L  V  L  F  L  I  R  F  G  H  L  E  R  V  M  L  S  Q  T  M  E  E  T  P  G  Y  G  H  R  S  H  Q  T  F  L  H  C  W  R  R  I  C  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14770" stop="14066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANWVLGLDSCLLVVHCILQVQQLLIIAQKASGFLILMVFESVSAITPDFRKVFWVYPSPCPCKSNGSSSVTRRRSRGKLGLDSSVRYRIRAKWVIRACVNGGDHHSFDMQIRDSARRGARNIVIKRFADELDAYGRVSEELEASRCSSNNFASFQEDPIVDKLRTQLGVMHPLPSPPINRNIFGLFALFFFVGVVFDKVWASRKSNAKPNNGGNSGIWSQVPPNLSSLLEKDLQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21034" PGL_stop="18551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21034" e_stop="20848"/>
            <exon e_start="19133" e_stop="19056"/>
            <exon e_start="18972" e_stop="18902"/>
            <exon e_start="18794" e_stop="18684"/>
            <exon e_start="18598" e_stop="18551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.995" e_score="0.974"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.985" acc_prob="0.948" e_score="0.955"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21034" e_stop="20848" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.965">
            <gDNA_intron_boundary i_start="20847" i_stop="19134" i_length="1714"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="19133" e_stop="19056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19055" i_stop="18973" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="18972" e_stop="18902" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18901" i_stop="18795" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="18794" e_stop="18684" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.948">
            <gDNA_intron_boundary i_start="18683" i_stop="18599" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18598" e_stop="18551" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21034" stop="20848"/>
              <exon start="19133" stop="19056"/>
              <exon start="18972" stop="18902"/>
              <exon start="18794" stop="18684"/>
              <exon start="18598" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAG : TATACTGGAATGATGTTACTTGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGTTGTCCCAAAG : AAGGTAGATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAG : CTTCAGCGTGTTTGATTTTCAGAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTCCCGCTTGCAAAGAAGTTCTCAAGGGAAAATGGAGAAATCATTCCTAAG : CTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</gDNA_template>
            <first_frame> L  V  C  C  C  I  W  N  Y  N  S  Y  K  P  G  C  N  N  R  *  A  S  C  P  *  P  T  G  S  N  V  T  C  C  P  T  Y  T  L  Y  A  K  E  M  A  R  E  R  K  Y  *  G  H  T  N  R  V  *  N  F  I  P   : V  Y  W  N  D  V  T  *  G  D  D  L  N  F  S  Y  T  I  S  A  A  I  C  C  P  K   : E  G  R  *  Y  F  A  L  H  C  G  L  H  C  S  R  *  G  C  W  S  C  V  Q  :  L  Q  R  V  *  F  S  E  S  W  Q  S  Q  I  W  I  T  I  *  F  F  P  L  A  K  K  F  S  R  E  N  G  E  I  I  P  K  :  L  S  N  *  L  S  F  L  A  T  *  *  S  W  K  T </first_frame>
            <second_frame>  W  Y  A  A  V  F  G  T  I  T  A  I  S  R  A  A  I  T  D  E  L  L  V  L  D  P  Q  G  A  M  S  L  V  V  Q  H  T  H  F  M  P  K  R  W  R  G  K  E  N  T  E  A  I  R  T  E  F  E  T  L  F  Q  :  Y  T  G  M  M  L  L  E  E  M  T  S  I  F  L  T  P  Y  L  L  L  F  V  V  P  K  :  K  V  D  D  I  L  R  F  I  A  D  F  T  V  H  V  E  G  V  G  H  V  C  S :   F  S  V  F  D  F  Q  N  H  G  N  R  K  Y  G  S  P  F  N  S  S  R  L  Q  R  S  S  Q  G  K  M  E  K  S  F  L  S :   F  Q  T  S  Y  P  S  W  Q  P  D  D  H  G  K   </second_frame>
            <third_frame>   G  M  L  L  Y  L  E  L  *  Q  L  *  A  G  L  Q  *  Q  M  S  F  L  S  L  T  H  R  E  Q  C  H  L  L  S  N  I  H  T  L  C  Q  R  D  G  E  G  K  K  I  L  R  P  Y  E  Q  S  L  K  L  Y  S  S :   I  L  E  *  C  Y  L  R  R  *  P  Q  F  F  L  H  H  I  C  C  Y  L  L  S  Q  R :   R  *  M  I  F  C  A  S  L  R  T  S  L  F  T  L  R  V  L  V  M  C  A   : A  S  A  C  L  I  F  R  I  M  A  I  A  N  M  D  H  H  L  I  L  P  A  C  K  E  V  L  K  G  K  W  R  N  H  S  *   : A  F  K  L  A  I  L  P  G  N  L  M  I  M  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21033" stop="20848"/>
                    <exon start="19133" stop="19056"/>
                    <exon start="18972" stop="18902"/>
                    <exon start="18794" stop="18684"/>
                    <exon start="18598" stop="18553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYAAVFGTITAISRAAITDELLVLDPQGAMSLVVQHTHFMPKRWRGKENTEAIRTEFETLFQYTGMMLLEEMTSIFLTPYLLLFVVPKKVDDILRFIADFTVHVEGVGHVCSFSVFDFQNHGNRKYGSPFNSSRLQRSSQGKMEKSFLSFQTSYPSWQPDDHGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26133" PGL_stop="23313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26133" e_stop="25508"/>
            <exon e_start="23400" e_stop="23313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.892" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26133" e_stop="25508" e_length="626"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.892">
            <gDNA_intron_boundary i_start="25507" i_stop="23401" i_length="2107"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="23400" e_stop="23313" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26133" stop="25508"/>
              <exon start="23400" stop="23313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCTTTTGGACTTACAGAAGAGAAAGAAGAAGAAAACAATCTACAATTGCACACGAAACTTAACCGTAATTCCCCCTTTCATTCTCCACGCAACCCCCAATTCTTCCACCTTATCACGGCGGTGACCGGTGACCGGTGACCGGAGGCAGTTCTTCATCAGAAGTATCTCGTCGTTTATTGCCTCATCCTTTTTGGGGTTGATTTCATCGTTTATGTGGGGCTGACGGAAAGTTATAGTTTTTATATTCAATTCAATCGTAAGGAGAAAAAACCTAGAAAAAATTGAGGTTTTTAGTGTAAGCCCATATTTTATTTAGCTTTGGTGGGGAGGTTTATGTGGTTATTGTGCGTTTTTGGATATTGGTGGAGGTAGGGAAAGGTGGTCCGGACACTAAAATTATCAAAGGGAACACAAAAAGATCACCTTTTTTCCAACTGGGTTTATTTTGAATTGTTGAAAATCTGAGCAAGCTGGTCTGAGCATCACCATCGAAAGAAAATTCAGTTTCCTCAACTGGGTTTCTTGGAATTGCTTAGAATTGTTTCAACAAATTGTTTATTTTATTGGTATATTGAGAATATCAGCTGGGCATTGGTGGAAACAGTGAATTATTAAGTTCAG : TGCTATATTTTAATTACTTGGTCCATGGGGAGTTGTCAGGGGGTGTTTGCATATCGTCAGCGTACATGAATGATGTTCAGTGGACAAA</gDNA_template>
            <first_frame> K  N  L  L  D  L  Q  K  R  K  K  K  K  T  I  Y  N  C  T  R  N  L  T  V  I  P  P  F  I  L  H  A  T  P  N  S  S  T  L  S  R  R  *  P  V  T  G  D  R  R  Q  F  F  I  R  S  I  S  S  F  I  A  S  S  F  L  G  L  I  S  S  F  M  W  G  *  R  K  V  I  V  F  I  F  N  S  I  V  R  R  K  N  L  E  K  I  E  V  F  S  V  S  P  Y  F  I  *  L  W  W  G  G  L  C  G  Y  C  A  F  L  D  I  G  G  G  R  E  R  W  S  G  H  *  N  Y  Q  R  E  H  K  K  I  T  F  F  P  T  G  F  I  L  N  C  *  K  S  E  Q  A  G  L  S  I  T  I  E  R  K  F  S  F  L  N  W  V  S  W  N  C  L  E  L  F  Q  Q  I  V  Y  F  I  G  I  L  R  I  S  A  G  H  W  W  K  Q  *  I  I  K  F  S :   A  I  F  *  L  L  G  P  W  G  V  V  R  G  C  L  H  I  V  S  V  H  E  *  C  S  V  D  K </first_frame>
            <second_frame>  K  T  F  W  T  Y  R  R  E  R  R  R  K  Q  S  T  I  A  H  E  T  *  P  *  F  P  L  S  F  S  T  Q  P  P  I  L  P  P  Y  H  G  G  D  R  *  P  V  T  G  G  S  S  S  S  E  V  S  R  R  L  L  P  H  P  F  W  G  *  F  H  R  L  C  G  A  D  G  K  L  *  F  L  Y  S  I  Q  S  *  G  E  K  T  *  K  K  L  R  F  L  V  *  A  H  I  L  F  S  F  G  G  E  V  Y  V  V  I  V  R  F  W  I  L  V  E  V  G  K  G  G  P  D  T  K  I  I  K  G  N  T  K  R  S  P  F  F  Q  L  G  L  F  *  I  V  E  N  L  S  K  L  V  *  A  S  P  S  K  E  N  S  V  S  S  T  G  F  L  G  I  A  *  N  C  F  N  K  L  F  I  L  L  V  Y  *  E  Y  Q  L  G  I  G  G  N  S  E  L  L  S  S   : V  L  Y  F  N  Y  L  V  H  G  E  L  S  G  G  V  C  I  S  S  A  Y  M  N  D  V  Q  W  T   </second_frame>
            <third_frame>   K  P  F  G  L  T  E  E  K  E  E  E  N  N  L  Q  L  H  T  K  L  N  R  N  S  P  F  H  S  P  R  N  P  Q  F  F  H  L  I  T  A  V  T  G  D  R  *  P  E  A  V  L  H  Q  K  Y  L  V  V  Y  C  L  I  L  F  G  V  D  F  I  V  Y  V  G  L  T  E  S  Y  S  F  Y  I  Q  F  N  R  K  E  K  K  P  R  K  N  *  G  F  *  C  K  P  I  F  Y  L  A  L  V  G  R  F  M  W  L  L  C  V  F  G  Y  W  W  R  *  G  K  V  V  R  T  L  K  L  S  K  G  T  Q  K  D  H  L  F  S  N  W  V  Y  F  E  L  L  K  I  *  A  S  W  S  E  H  H  H  R  K  K  I  Q  F  P  Q  L  G  F  L  E  L  L  R  I  V  S  T  N  C  L  F  Y  W  Y  I  E  N  I  S  W  A  L  V  E  T  V  N  Y  *  V  Q  :  C  Y  I  L  I  T  W  S  M  G  S  C  Q  G  V  F  A  Y  R  Q  R  T  *  M  M  F  S  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28824" PGL_stop="48259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33764" e_stop="34021"/>
            <exon e_start="34186" e_stop="34248"/>
            <exon e_start="34346" e_stop="34447"/>
            <exon e_start="34600" e_stop="34704"/>
            <exon e_start="34882" e_stop="34974"/>
            <exon e_start="35497" e_stop="35585"/>
            <exon e_start="38421" e_stop="38640"/>
            <exon e_start="39978" e_stop="40064"/>
            <exon e_start="40712" e_stop="40828"/>
            <exon e_start="40915" e_stop="40947"/>
            <exon e_start="41081" e_stop="42426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.127" e_score="0.884"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="0.952"/>
          <exon-intron don_prob="0.996" acc_prob="0.415" e_score="0.931"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.901" acc_prob="0.910" e_score="0.978"/>
          <exon-intron don_prob="0.956" acc_prob="0.659" e_score="0.966"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="33764" e_stop="34021" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.127">
            <gDNA_intron_boundary i_start="34022" i_stop="34185" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="34186" e_stop="34248" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="34346" e_stop="34447" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.415">
            <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="34600" e_stop="34704" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="34882" e_stop="34974" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.910">
            <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="35497" e_stop="35585" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="0.659">
            <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="38421" e_stop="38640" e_length="220"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39978" e_stop="40064" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40712" e_stop="40828" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.886">
            <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40915" e_stop="40947" e_length="33"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133"/>
          </intron>
          <exon e_serial="11" e_score="0.995">
            <gDNA_exon_boundary e_start="41081" e_stop="42426" e_length="1346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33764" stop="34021"/>
              <exon start="34186" stop="34248"/>
              <exon start="34346" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35538" stop="35585"/>
              <exon start="38421" stop="38640"/>
              <exon start="39978" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="42426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTGTTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGTTGAGAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG : GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG : ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT : ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG : GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA : AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTGGTGAGTATTGAGTATCTGCCATTTATGCTGGTATTCATTTTTTCGTTGTCCACCACTTTTCTGCTGCAGATGTATATTTCTTTAATAATTTCATTATCACACTTGGAGAAGAAGCTCTTTTTGGATATATTTTTGGTTTGTTATAAAGGCAGAGTTTACTAGTGAAAGAATGGAGATGGGTTATTCTTTGTTAGCTCTTGTTATAAGACTTACTAGTGAGAGGGGAAGATACTTACCCCACGACTCTATTTAGATTCCTAGAGCTTCGAGGAAGGTGTGTTTCTTTGTATGGTTGGTGGGAAGGGGTGCGGTCTTAAAAGCGGCAAATTTGAGGAGGATCACCTTTGTTAGTTGGTGCGTTATGGGTAAGTGTGCATGAGAAAAACAATGTGTCTAATCGGTCATGGAGGGTGGCCGTCAACTTGTTTAGGATGCAATGGGTGATGTCAGGCATAGTGAAGGAGGCATGACAAAGTTAGATGTCGGGCACAATGAAGGATGCTTTACAAAGCTGGACTCATAAGAGGGGGAAGAGAAACTTTAGGGCATACAGTGTTGCCCGTTTAGCAATCATGTGGGTCATTTGGAAAGGGAGAAATAGGAGGGCATGCAAAGGAGTGGAGCAAGACTCGTATAATTGCAGAGTAGCGTTTTGTCTCTAGTTTCTCTTTTGGTGTACTTTCGAGGTCCCTATTTGCATAGAGGATTGAATCTCTTATGTTGAGAACCATATTTTGATCTAGGCTCTCTTCTTTTGATATACGGCTTGTATACGGGCTACTACCCCCGTTTGTTAACAAAATGATTTACCTTCTCAAAAAGAATAATTCTATCATTTTATAGTGAAACGGACCATCAGTTTAAGCCTTCAAATCTGAGCTTTGAAACTGTGCGTAACTGATCCTCGGGGATTCTCGGTTATAATCAAATGATTATCTAATCACATCTCAGCCATTGAGCAGCTCCTATTCTGTAGTGGAATGGACCATCAGTTTAAGCCTTCAAATCTCATGCTACATGTGTCCAATTTCTTAGCTATACAATGTTTGATTGACTGTTAGATTGTAAGAGTTACTTTTATAAATTTTCAGGAGCATCTGAGGCGGATTCTAAGGGGTC</gDNA_template>
            <first_frame> H  C  N  D  V  K  S  I  L  L  F  G  Y  L  *  S  L  Q  C  G  H  V  *  S  H  R  F  L  V  G  I  C  S  F  I  K  I  *  V  L  L  N  *  A  C  K  S  L  H  K  S  T  N  N  H  C  V  S  P  L  R  Y  *  R  Y  V  E  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  S  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  S  K  T  S  F  A  E  G  I  E  S  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  L  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  D  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  G  E  S  L  A  G  L  R  P  T  L  D  R  I  L  A  D  V  H  E  R  L  T  F  R  S  R  T  Y  I  R  D  E  :  I  A  N  Y  L  P  S  E  E  D  L  D  Y  P  K  K  L  E  Q  S  V  S  A  E  L  D  S  P  S  :  T  E  L  N  Q  D  V  S  G  T  W  Y  P  P  L  E  K  T  I  S  C  L  S  K  L  Y  C  S  L  E  T  A  V  F  T  G  L  A  Q  :  E  A  V  E  F  C  S  L  S  I  Q  :  K  A  S  K  L  I  G  K  R  S  S  S  M  D  A  Q  L  F  L  I  K  H  L  L  I  L  R  E  Q  A  G  F  S  Y  L  L  M  K  F  L  V  I  V  I  A  A  G  F  *  L  K  M  P  S  R  L  P  H  S  T  *  N  F  Q  S  R  I  R  N  L  I  F  H  I  C  W  *  V  L  S  I  C  H  L  C  W  Y  S  F  F  R  C  P  P  L  F  C  C  R  C  I  F  L  *  *  F  H  Y  H  T  W  R  R  S  S  F  W  I  Y  F  W  F  V  I  K  A  E  F  T  S  E  R  M  E  M  G  Y  S  L  L  A  L  V  I  R  L  T  S  E  R  G  R  Y  L  P  H  D  S  I  *  I  P  R  A  S  R  K  V  C  F  F  V  W  L  V  G  R  G  A  V  L  K  A  A  N  L  R  R  I  T  F  V  S  W  C  V  M  G  K  C  A  *  E  K  Q  C  V  *  S  V  M  E  G  G  R  Q  L  V  *  D  A  M  G  D  V  R  H  S  E  G  G  M  T  K  L  D  V  G  H  N  E  G  C  F  T  K  L  D  S  *  E  G  E  E  K  L  *  G  I  Q  C  C  P  F  S  N  H  V  G  H  L  E  R  E  K  *  E  G  M  Q  R  S  G  A  R  L  V  *  L  Q  S  S  V  L  S  L  V  S  L  L  V  Y  F  R  G  P  Y  L  H  R  G  L  N  L  L  C  *  E  P  Y  F  D  L  G  S  L  L  L  I  Y  G  L  Y  T  G  Y  Y  P  R  L  L  T  K  *  F  T  F  S  K  R  I  I  L  S  F  Y  S  E  T  D  H  Q  F  K  P  S  N  L  S  F  E  T  V  R  N  *  S  S  G  I  L  G  Y  N  Q  M  I  I  *  S  H  L  S  H  *  A  A  P  I  L  *  W  N  G  P  S  V  *  A  F  K  S  H  A  T  C  V  Q  F  L  S  Y  T  M  F  D  *  L  L  D  C  K  S  Y  F  Y  K  F  S  G  A  S  E  A  D  S  K  G   </first_frame>
            <second_frame>  T  A  M  M  *  N  P  Y  F  S  L  V  I  C  K  V  Y  N  V  D  M  S  R  V  T  G  F  L  *  G  F  V  L  L  S  R  F  K  S  C  *  I  K  L  V  N  L  C  I  R  A  Q  I  T  I  V  F  L  L  C  V  T  E  D  M  L  R  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  M  F  F  P  F  L  E  V  L  L  L  R :   S  R  L  Q  Y  E  A  V  V  V  A  K  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  A  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  V  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  V  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  P  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  *  S  I  N  F  S  I  T  S  S  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  C  V  L  N  L  F  T  K  Q  I  W  M  F  F  V  N  W  L  I  S  L  K  L  K  F  *  E  N  N  *  A  D  G  G  N  H  W  L  G  Y  V  Q  R  W  T  E  F  *  Q  M  Y  M  S  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  Q  I  T  F  L  Q  R  R  I  W  I  T  L  K  S  W  S  N  L  F  Q  Q  N  W  I  H  H  L :   L  N  *  I  K  M  F  P  E  L  G  I  L  H  W  R  K  P  Y  H  V  Y  Q  N  C  T  V  L  *  K  Q  L  F  L  L  D  W  L  R :   K  L  *  S  F  A  R  Y  P  F  K :   K  L  A  N  L  L  A  K  D  R  H  Q  W  M  H  N  F  S  *  *  S  I  Y  S  S  *  G  S  R  Q  V  S  L  T  C  L  *  N  S  *  L  L  S  *  L  L  D  S  N  L  R  C  L  P  D  C  P  I  R  H  R  I  F  S  H  A  *  G  T  *  F  F  T  F  A  G  E  Y  *  V  S  A  I  Y  A  G  I  H  F  F  V  V  H  H  F  S  A  A  D  V  Y  F  F  N  N  F  I  I  T  L  G  E  E  A  L  F  G  Y  I  F  G  L  L  *  R  Q  S  L  L  V  K  E  W  R  W  V  I  L  C  *  L  L  L  *  D  L  L  V  R  G  E  D  T  Y  P  T  T  L  F  R  F  L  E  L  R  G  R  C  V  S  L  Y  G  W  W  E  G  V  R  S  *  K  R  Q  I  *  G  G  S  P  L  L  V  G  A  L  W  V  S  V  H  E  K  N  N  V  S  N  R  S  W  R  V  A  V  N  L  F  R  M  Q  W  V  M  S  G  I  V  K  E  A  *  Q  S  *  M  S  G  T  M  K  D  A  L  Q  S  W  T  H  K  R  G  K  R  N  F  R  A  Y  S  V  A  R  L  A  I  M  W  V  I  W  K  G  R  N  R  R  A  C  K  G  V  E  Q  D  S  Y  N  C  R  V  A  F  C  L  *  F  L  F  W  C  T  F  E  V  P  I  C  I  E  D  *  I  S  Y  V  E  N  H  I  L  I  *  A  L  F  F  *  Y  T  A  C  I  R  A  T  T  P  V  C  *  Q  N  D  L  P  S  Q  K  E  *  F  Y  H  F  I  V  K  R  T  I  S  L  S  L  Q  I  *  A  L  K  L  C  V  T  D  P  R  G  F  S  V  I  I  K  *  L  S  N  H  I  S  A  I  E  Q  L  L  F  C  S  G  M  D  H  Q  F  K  P  S  N  L  M  L  H  V  S  N  F  L  A  I  Q  C  L  I  D  C  *  I  V  R  V  T  F  I  N  F  Q  E  H  L  R  R  I  L  R  G  </second_frame>
            <third_frame>   L  Q  *  C  K  I  H  T  S  L  W  L  F  V  K  F  T  M  W  T  C  L  E  S  Q  V  S  C  R  D  L  F  F  Y  Q  D  L  S  P  V  E  L  S  L  *  I  F  A  *  E  H  K  *  P  L  C  F  S  S  A  L  L  K  I  C  *  E  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  L  S  C  S  F  R  S  *  K  Y  F  F  S   : G  P  G  C  N  T  K  Q  W  W  *  Q  N  I  F  C  R  G  Y  R  V  I  Y  N  I  C  T  L  Q  G  C  S  K  *   : A  *  A  Y  L  G  G  N  *  K  *  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  *  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  Q  E  R  S  T  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  R  A  S  T  F  Q  S  L  L  P  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  S  G  C  S  L  *  T  G  *  Y  P  *  S  *  S  S  R  R  T  I  E  Q  T  G  G  I  I  G  W  A  T  S  N  A  G  Q  N  S  S  R  C  T  *  A  I  N  F  S  F  S  H  L  Y  P  *  *   : D  C  K  L  P  S  F  R  G  G  S  G  L  P  *  K  V  G  A  I  C  F  S  R  T  G  F  T  I   : Y  *  T  K  S  R  C  F  R  N  L  V  S  S  T  G  E  N  H  I  M  S  I  K  T  V  L  F  S  R  N  S  C  F  Y  W  I  G  S   : G  S  C  R  V  L  L  V  I  H  S   : K  S  *  Q  T  Y  W  Q  K  I  V  I  N  G  C  T  T  F  P  N  K  A  S  T  H  P  E  G  A  G  R  F  L  L  P  A  Y  E  I  P  S  Y  C  H  S  C  W  I  L  T  *  D  A  F  Q  I  A  P  F  D  I  E  F  S  V  T  H  K  E  L  D  F  S  H  L  L  V  S  I  E  Y  L  P  F  M  L  V  F  I  F  S  L  S  T  T  F  L  L  Q  M  Y  I  S  L  I  I  S  L  S  H  L  E  K  K  L  F  L  D  I  F  L  V  C  Y  K  G  R  V  Y  *  *  K  N  G  D  G  L  F  F  V  S  S  C  Y  K  T  Y  *  *  E  G  K  I  L  T  P  R  L  Y  L  D  S  *  S  F  E  E  G  V  F  L  C  M  V  G  G  K  G  C  G  L  K  S  G  K  F  E  E  D  H  L  C  *  L  V  R  Y  G  *  V  C  M  R  K  T  M  C  L  I  G  H  G  G  W  P  S  T  C  L  G  C  N  G  *  C  Q  A  *  *  R  R  H  D  K  V  R  C  R  A  Q  *  R  M  L  Y  K  A  G  L  I  R  G  G  R  E  T  L  G  H  T  V  L  P  V  *  Q  S  C  G  S  F  G  K  G  E  I  G  G  H  A  K  E  W  S  K  T  R  I  I  A  E  *  R  F  V  S  S  F  S  F  G  V  L  S  R  S  L  F  A  *  R  I  E  S  L  M  L  R  T  I  F  *  S  R  L  S  S  F  D  I  R  L  V  Y  G  L  L  P  P  F  V  N  K  M  I  Y  L  L  K  K  N  N  S  I  I  L  *  *  N  G  P  S  V  *  A  F  K  S  E  L  *  N  C  A  *  L  I  L  G  D  S  R  L  *  S  N  D  Y  L  I  T  S  Q  P  L  S  S  S  Y  S  V  V  E  W  T  I  S  L  S  L  Q  I  S  C  Y  M  C  P  I  S  *  L  Y  N  V  *  L  T  V  R  L  *  E  L  L  L  *  I  F  R  S  I  *  G  G  F  *  G  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33953" stop="34021"/>
                    <exon start="34186" stop="34248"/>
                    <exon start="34346" stop="34447"/>
                    <exon start="34600" stop="34704"/>
                    <exon start="34882" stop="34974"/>
                    <exon start="35497" stop="35585"/>
                    <exon start="38421" stop="38640"/>
                    <exon start="39978" stop="40064"/>
                    <exon start="40712" stop="40828"/>
                    <exon start="40915" stop="40947"/>
                    <exon start="41081" stop="41227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYVESNPQYAECSIYLVKFRQLQSRALGMIRSHVLSVLRSTSSQVQAAIRSSGGSKTSFAEGIESSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTLRPKLIHETNLDVLCELVDILKVEVLGEQLSRRGESLAGLRPTLDRILADVHERLTFRSRTYIRDEIANYLPSEEDLDYPKKLEQSVSAELDSPSTELNQDVSGTWYPPLEKTISCLSKLYCSLETAVFTGLAQEAVEFCSLSIQKASKLIGKRSSSMDAQLFLIKHLLILREQAGFSYLLMKFLVIVIAAGF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41233" stop="41469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAFQIAPFDIEFSVTHKELDFSHLLVSIEYLPFMLVFIFSLSTTFLLQMYISLIISLSHLEKKLFLDIFLVCYKGRVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40019" e_stop="40064"/>
            <exon e_start="40712" e_stop="40828"/>
            <exon e_start="40915" e_stop="40947"/>
            <exon e_start="41081" e_stop="41167"/>
            <exon e_start="41245" e_stop="41307"/>
            <exon e_start="42399" e_stop="42515"/>
            <exon e_start="46025" e_stop="46117"/>
            <exon e_start="47894" e_stop="48016"/>
            <exon e_start="48225" e_stop="48259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="0.913"/>
          <exon-intron don_prob="0.994" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.957" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="40019" e_stop="40064" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40712" e_stop="40828" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.886">
            <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40915" e_stop="40947" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41081" e_stop="41167" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.613">
            <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41245" e_stop="41307" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.899" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41308" i_stop="42398" i_length="1091"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42399" e_stop="42515" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="42516" i_stop="46024" i_length="3509"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="46025" e_stop="46117" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46118" i_stop="47893" i_length="1776"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47894" e_stop="48016" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="48017" i_stop="48224" i_length="208"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="48225" e_stop="48259" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40019" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41307"/>
              <exon start="42399" stop="42515"/>
              <exon start="46025" stop="46117"/>
              <exon start="47894" stop="48016"/>
              <exon start="48225" stop="48259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT : ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG : GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA : AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG : ATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG : GAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAG : GAATTGGAGAAAAGCCTGAAAACTACTTGCGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAG : GTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTTCAGAAG : GTCAACACAGCAATAGATGAAGATTTGCCTAGGGT</gDNA_template>
            <first_frame> *  K  V  G  A  I  C  F  S  R  T  G  F  T  I   : Y  *  T  K  S  R  C  F  R  N  L  V  S  S  T  G  E  N  H  I  M  S  I  K  T  V  L  F  S  R  N  S  C  F  Y  W  I  G  S   : G  S  C  R  V  L  L  V  I  H  S   : K  S  *  Q  T  Y  W  Q  K  I  V  I  N  G  C  T  T  F  P  N  K  A  S  T  H  P  E  G  A   : D  C  P  I  R  H  R  I  F  S  H  A  *  G  T  *  F  F  T  F  A   : G  A  S  E  A  D  S  K  G  S  G  I  N  L  *  L  V  E  I  N  F  I  S  *  N  F  I  S  T  S  F  G  K  S  N  *  R  Q  E   : G  I  G  E  K  P  E  N  Y  L  R  G  V  H  Y  V  S  D  *  V  S  C  G  T  I  A  F  F  C  D  K   : G  Y  G  C  *  S  C  I  I  *  *  S  K  S  K  T  G  V  W  D  C  K  A  T  Q  G  S  C  F  C  F  T  R  K  D  C  R  A  S  S  E   : G  Q  H  S  N  R  *  R  F  A  *  G </first_frame>
            <second_frame>  K  K  L  E  Q  S  V  S  A  E  L  D  S  P  S  :  T  E  L  N  Q  D  V  S  G  T  W  Y  P  P  L  E  K  T  I  S  C  L  S  K  L  Y  C  S  L  E  T  A  V  F  T  G  L  A  Q  :  E  A  V  E  F  C  S  L  S  I  Q  :  K  A  S  K  L  I  G  K  R  S  S  S  M  D  A  Q  L  F  L  I  K  H  L  L  I  L  R  E  Q  :  I  A  P  F  D  I  E  F  S  V  T  H  K  E  L  D  F  S  H  L  L  :  E  H  L  R  R  I  L  R  G  Q  A  S  I  F  D  W  S  R  S  T  S  L  A  R  T  L  S  P  R  V  L  E  S  Q  I  D  A  K  K  :  E  L  E  K  S  L  K  T  T  C  E  E  F  I  M  S  V  T  K  L  V  V  E  P  L  L  S  F  V  T  K  :  V  T  A  V  K  V  A  L  S  S  S  Q  N  Q  K  L  E  S  G  I  A  K  P  L  K  D  H  A  F  A  S  P  E  K  I  A  E  L  L  Q  K  :  V  N  T  A  I  D  E  D  L  P  R   </second_frame>
            <third_frame>   K  S  W  S  N  L  F  Q  Q  N  W  I  H  H  L :   L  N  *  I  K  M  F  P  E  L  G  I  L  H  W  R  K  P  Y  H  V  Y  Q  N  C  T  V  L  *  K  Q  L  F  L  L  D  W  L  R :   K  L  *  S  F  A  R  Y  P  F  K :   K  L  A  N  L  L  A  K  D  R  H  Q  W  M  H  N  F  S  *  *  S  I  Y  S  S  *  G  S  R :   L  P  H  S  T  *  N  F  Q  S  R  I  R  N  L  I  F  H  I  C  W :   S  I  *  G  G  F  *  G  V  R  H  Q  S  L  T  G  R  D  Q  L  H  *  L  E  L  Y  L  H  E  F  W  K  V  K  L  T  P  R  R :   N  W  R  K  A  *  K  L  L  A  R  S  S  L  C  Q  *  L  S  *  L  W  N  H  C  F  L  L  *  Q  R :   L  R  L  L  K  L  H  Y  L  V  V  K  I  K  N  W  S  L  G  L  Q  S  H  S  R  I  M  L  L  L  H  Q  K  R  L  P  S  F  F  R  R :   S  T  Q  Q  *  M  K  I  C  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40020" stop="40064"/>
                    <exon start="40712" stop="40828"/>
                    <exon start="40915" stop="40947"/>
                    <exon start="41081" stop="41167"/>
                    <exon start="41245" stop="41307"/>
                    <exon start="42399" stop="42515"/>
                    <exon start="46025" stop="46117"/>
                    <exon start="47894" stop="48016"/>
                    <exon start="48225" stop="48257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLEQSVSAELDSPSTELNQDVSGTWYPPLEKTISCLSKLYCSLETAVFTGLAQEAVEFCSLSIQKASKLIGKRSSSMDAQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASIFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKTTCEEFIMSVTKLVVEPLLSFVTKVTAVKVALSSSQNQKLESGIAKPLKDHAFASPEKIAELLQKVNTAIDEDLPR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28853" e_stop="28946"/>
            <exon e_start="29748" e_stop="29831"/>
            <exon e_start="29910" e_stop="30011"/>
            <exon e_start="31642" e_stop="31686"/>
            <exon e_start="31803" e_stop="31877"/>
            <exon e_start="32002" e_stop="32097"/>
            <exon e_start="32605" e_stop="32682"/>
            <exon e_start="33624" e_stop="33709"/>
            <exon e_start="33955" e_stop="33991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="0.851"/>
          <exon-intron don_prob="0.811" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.060" e_score="0.977"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.851">
            <gDNA_exon_boundary e_start="28853" e_stop="28946" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="29748" e_stop="29831" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29832" i_stop="29909" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29910" e_stop="30011" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31642" e_stop="31686" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31877" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.809" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32002" e_stop="32097" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.419" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32605" e_stop="32682" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="33624" e_stop="33709" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.887" acc_prob="0.060">
            <gDNA_intron_boundary i_start="33710" i_stop="33954" i_length="245"/>
          </intron>
          <exon e_serial="9" e_score="0.919">
            <gDNA_exon_boundary e_start="33955" e_stop="33991" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28853" stop="28946"/>
              <exon start="29748" stop="29831"/>
              <exon start="29910" stop="30011"/>
              <exon start="31642" stop="31686"/>
              <exon start="31803" stop="31877"/>
              <exon start="32002" stop="32097"/>
              <exon start="32605" stop="32682"/>
              <exon start="33624" stop="33709"/>
              <exon start="33955" stop="33991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG : AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTG : GATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG : TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG : ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG : CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGTAGTACAAATTTTCTACCATTGCTTAAAAGACTTGATGAATGCATATC : ATATGTTGAGAGTAACCCACAATATGCAGAGTGCAGC</gDNA_template>
            <first_frame> Y  *  *  T  H  G  D  G  N  K  A  R  C  P  K  V  G  S  Y  F  Q  R  L  Q  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  T  S  S  H  T  S  T  F  P  C  S  C  *  E  T  F  S  V  Q  F   : G  S  S  F  W  T  R  *  Q  F  L  C  L  N  K  T  Q  F  Y  G  G  F  R  G  H  *  S  S  P  C  E  Y  K  S   : V  L  Q  V  V  C  R  S  *  S  S  H  E  I  R   : D  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  I  Q  *  A  A  V  A  A  P  N  S  G  N  K  D  *  N  P  S  *  C  V  *  *  T   : A  F  G  E  A  E  I  N  *  V  C  R  I  T  S  Q  K  A  Q  L  L  *  *  I  G  E   : C  C  N  H  F  L  F  S  *  H  E  C  W  *  Y  K  F  S  T  I  A  *  K  T  *  *  M  H  I  :  I  C  *  E  *  P  T  I  C  R  V  Q  </first_frame>
            <second_frame>  I  D  K  P  M  A  T  A  T  R  P  G  V  P  K  S  A  A  I  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  P  L  T  E  Q  Q  Q  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  F  S  V  S  T  K  L  N  S  M  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  S  E  :  T  E  E  K  Y  Q  H  Y  V  N  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  T  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  L  I  E  F  A  E  S  L  H  K  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V  G  S  T  N  F  L  P  L  L  K  R  L  D  E  C  I  S :   Y  V  E  S  N  P  Q  Y  A  E  C  S </second_frame>
            <third_frame>   L  I  N  P  W  R  R  Q  Q  G  P  V  S  Q  S  R  Q  L  F  P  K  A  T  I  S  L  L  L  G  N  R :   M  L  R  *  Q  S  N  N  K  Q  P  Y  K  H  F  P  M  Q  L  L  R  D  L  F  R  P  I  W :   I  K  F  L  D  T  I  T  V  S  L  S  Q  Q  N  S  I  L  W  R  I  Q  G  P  L  K  Q  S  L  *  I  Q  I  S :   S  T  S  G  L  Q  I  L  K  Q  P  *  N  Q  R :   L  K  K  N  I  S  I  M  S  T  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  Y  S  M  S  C  S  C  S  T  K  Q  W  Q  Q  R  L  E  P  F  M  M  R  V  I  D  C :   F  W  R  S  R  N  *  L  S  L  Q  N  H  F  T  K  S  S  I  T  L  M  N  W  R  M :   L  Q  P  L  F  I  L  L  A  *  V  L  V  V  Q  I  F  Y  H  C  L  K  D  L  M  N  A  Y   : H  M  L  R  V  T  H  N  M  Q  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28854" stop="28946"/>
                    <exon start="29748" stop="29831"/>
                    <exon start="29910" stop="30011"/>
                    <exon start="31642" stop="31686"/>
                    <exon start="31803" stop="31877"/>
                    <exon start="32002" stop="32097"/>
                    <exon start="32605" stop="32682"/>
                    <exon start="33624" stop="33709"/>
                    <exon start="33955" stop="33991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDKPMATATRPGVPKSAAISKGYNFASTWEQNAPLTEQQQAAIQALSHAVAERPFPSNLDQVSGHDNSFSVSTKLNSMEDSGAIEAVLVNTNQFYKWFADLEAAMKSETEEKYQHYVNTLTEQIQTCDSILHQVDETLDLFNELQLQHQTVATKTRTLHDACDRLLLEKQKLIEFAESLHKKLNYFDELENVATTFYSPSMSVGSTNFLPLLKRLDECISYVESNPQYAECS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28824" e_stop="28946"/>
            <exon e_start="29748" e_stop="30011"/>
            <exon e_start="31642" e_stop="31686"/>
            <exon e_start="31803" e_stop="31877"/>
            <exon e_start="32002" e_stop="32097"/>
            <exon e_start="32605" e_stop="32682"/>
            <exon e_start="33624" e_stop="33661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28824" e_stop="28946" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29748" e_stop="30011" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31642" e_stop="31686" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31877" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.809" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32002" e_stop="32097" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.419" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32605" e_stop="32682" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33624" e_stop="33661" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28824" stop="28946"/>
              <exon start="29748" stop="30011"/>
              <exon start="31642" stop="31686"/>
              <exon start="31803" stop="31877"/>
              <exon start="32002" stop="32097"/>
              <exon start="32605" stop="32682"/>
              <exon start="33624" stop="33661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG : AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG : TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG : ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG : CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGG</gDNA_template>
            <first_frame> E  T  V  V  E  V  E  E  D  S  I  D  K  P  M  A  T  A  T  R  P  G  V  P  K  S  A  A  I  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  P  L  T  E  Q  Q  Q  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  V  N  Y  S  F  L  V  G  F  R  I  H  L  S  Q  T  Q  I  T  C  F  Y  F  N  F  Q  D  Q  V  S  G  H  D  N  S  F  S  V  S  T  K  L  N  S  M  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  S  E  :  T  E  E  K  Y  Q  H  Y  V  N  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  T  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  L  I  E  F  A  E  S  L  H  K  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V   </first_frame>
            <second_frame>  K  Q  L  W  K  W  K  K  T  V  L  I  N  P  W  R  R  Q  Q  G  P  V  S  Q  S  R  Q  L  F  P  K  A  T  I  S  L  L  L  G  N  R :   M  L  R  *  Q  S  N  N  K  Q  P  Y  K  H  F  P  M  Q  L  L  R  D  L  F  R  P  I  W  *  I  I  P  S  W  L  V  S  E  Y  I  Y  L  K  L  K  L  L  V  F  I  S  I  S  R  I  K  F  L  D  T  I  T  V  S  L  S  Q  Q  N  S  I  L  W  R  I  Q  G  P  L  K  Q  S  L  *  I  Q  I  S :   S  T  S  G  L  Q  I  L  K  Q  P  *  N  Q  R :   L  K  K  N  I  S  I  M  S  T  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  Y  S  M  S  C  S  C  S  T  K  Q  W  Q  Q  R  L  E  P  F  M  M  R  V  I  D  C :   F  W  R  S  R  N  *  L  S  L  Q  N  H  F  T  K  S  S  I  T  L  M  N  W  R  M :   L  Q  P  L  F  I  L  L  A  *  V  L  </second_frame>
            <third_frame>   N  S  C  G  S  G  R  R  Q  Y  *  *  T  H  G  D  G  N  K  A  R  C  P  K  V  G  S  Y  F  Q  R  L  Q  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  T  S  S  H  T  S  T  F  P  C  S  C  *  E  T  F  S  V  Q  F  G  E  L  F  L  L  G  W  F  Q  N  T  S  I  S  N  S  N  Y  L  F  L  F  Q  F  P  G  S  S  F  W  T  R  *  Q  F  L  C  L  N  K  T  Q  F  Y  G  G  F  R  G  H  *  S  S  P  C  E  Y  K  S   : V  L  Q  V  V  C  R  S  *  S  S  H  E  I  R   : D  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  I  Q  *  A  A  V  A  A  P  N  S  G  N  K  D  *  N  P  S  *  C  V  *  *  T   : A  F  G  E  A  E  I  N  *  V  C  R  I  T  S  Q  K  A  Q  L  L  *  *  I  G  E   : C  C  N  H  F  L  F  S  *  H  E  C  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28824" stop="28946"/>
                    <exon start="29748" stop="30011"/>
                    <exon start="31642" stop="31686"/>
                    <exon start="31803" stop="31877"/>
                    <exon start="32002" stop="32097"/>
                    <exon start="32605" stop="32682"/>
                    <exon start="33624" stop="33659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVVEVEEDSIDKPMATATRPGVPKSAAISKGYNFASTWEQNAPLTEQQQAAIQALSHAVAERPFPSNLVNYSFLVGFRIHLSQTQITCFYFNFQDQVSGHDNSFSVSTKLNSMEDSGAIEAVLVNTNQFYKWFADLEAAMKSETEEKYQHYVNTLTEQIQTCDSILHQVDETLDLFNELQLQHQTVATKTRTLHDACDRLLLEKQKLIEFAESLHKKLNYFDELENVATTFYSPSMSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58805" PGL_stop="59437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58805" e_stop="59437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="58805" e_stop="59437" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58805" stop="59437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCTTCTCATCTTGTTCTCTACGACTATGGATGTCATTTTATTTATACCAAAAGAGGATAAAGAACAAAGGGGAGTATAGTTATATATTGGCCTTTTGGAATCTTACAAAGGATGATATTTCAAATGGATTGTGAAAAAAAAAATGTTTATTTGTGTTTTGGTTATTGCACTATTTTGTTGTTGTTATTGTTCCTTTGATGAATGCTTTGTGCTTTCCTTATTATTTACCATATTTTCTTCAATGTCATTTTCCATTTCATAACTACTTTGTTTAGCTGCATAAGAGCCTAGGGTCCATCGGAAACAACCTTTCTATCTCAACGAGGTAAGGTCGCGTATACTCTACCCTCTCTAGATCCCACTTGTGGAATTTCCTTTGTTGTTGTTGGATTGTGAAAAAGATGGCCCTCTGGGAGGAGGAAACTCAAATTAGGAATCAAAACAATGATGTCACCACTACACTTGCATATTTTGGCCTTGTATTGCATAAAGCAAAAACAGCTGTCCACCATATATGGAGATAAGGCATATACTTTGAAATTAGAAAGACAAAACCATAGTTTTCAGTGATAACTTTACTATAAGGTGGATCAGTTTTGAACAATACAAATAAAATGACCCTGCATATTG</gDNA_template>
            <first_frame> N  S  S  H  L  V  L  Y  D  Y  G  C  H  F  I  Y  T  K  R  G  *  R  T  K  G  S  I  V  I  Y  W  P  F  G  I  L  Q  R  M  I  F  Q  M  D  C  E  K  K  N  V  Y  L  C  F  G  Y  C  T  I  L  L  L  L  L  F  L  *  *  M  L  C  A  F  L  I  I  Y  H  I  F  F  N  V  I  F  H  F  I  T  T  L  F  S  C  I  R  A  *  G  P  S  E  T  T  F  L  S  Q  R  G  K  V  A  Y  T  L  P  S  L  D  P  T  C  G  I  S  F  V  V  V  G  L  *  K  R  W  P  S  G  R  R  K  L  K  L  G  I  K  T  M  M  S  P  L  H  L  H  I  L  A  L  Y  C  I  K  Q  K  Q  L  S  T  I  Y  G  D  K  A  Y  T  L  K  L  E  R  Q  N  H  S  F  Q  *  *  L  Y  Y  K  V  D  Q  F  *  T  I  Q  I  K  *  P  C  I  L </first_frame>
            <second_frame>  T  L  L  I  L  F  S  T  T  M  D  V  I  L  F  I  P  K  E  D  K  E  Q  R  G  V  *  L  Y  I  G  L  L  E  S  Y  K  G  *  Y  F  K  W  I  V  K  K  K  M  F  I  C  V  L  V  I  A  L  F  C  C  C  Y  C  S  F  D  E  C  F  V  L  S  L  L  F  T  I  F  S  S  M  S  F  S  I  S  *  L  L  C  L  A  A  *  E  P  R  V  H  R  K  Q  P  F  Y  L  N  E  V  R  S  R  I  L  Y  P  L  *  I  P  L  V  E  F  P  L  L  L  L  D  C  E  K  D  G  P  L  G  G  G  N  S  N  *  E  S  K  Q  *  C  H  H  Y  T  C  I  F  W  P  C  I  A  *  S  K  N  S  C  P  P  Y  M  E  I  R  H  I  L  *  N  *  K  D  K  T  I  V  F  S  D  N  F  T  I  R  W  I  S  F  E  Q  Y  K  *  N  D  P  A  Y   </second_frame>
            <third_frame>   L  F  S  S  C  S  L  R  L  W  M  S  F  Y  L  Y  Q  K  R  I  K  N  K  G  E  Y  S  Y  I  L  A  F  W  N  L  T  K  D  D  I  S  N  G  L  *  K  K  K  C  L  F  V  F  W  L  L  H  Y  F  V  V  V  I  V  P  L  M  N  A  L  C  F  P  Y  Y  L  P  Y  F  L  Q  C  H  F  P  F  H  N  Y  F  V  *  L  H  K  S  L  G  S  I  G  N  N  L  S  I  S  T  R  *  G  R  V  Y  S  T  L  S  R  S  H  L  W  N  F  L  C  C  C  W  I  V  K  K  M  A  L  W  E  E  E  T  Q  I  R  N  Q  N  N  D  V  T  T  T  L  A  Y  F  G  L  V  L  H  K  A  K  T  A  V  H  H  I  W  R  *  G  I  Y  F  E  I  R  K  T  K  P  *  F  S  V  I  T  L  L  *  G  G  S  V  L  N  N  T  N  K  M  T  L  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59137" stop="59331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRVYSTLSRSHLWNFLCCCWIVKKMALWEEETQIRNQNNDVTTTLAYFGLVLHKAKTAVHHIWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="60031" PGL_stop="60843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60031" e_stop="60371"/>
            <exon e_start="60616" e_stop="60843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60031" e_stop="60371" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60372" i_stop="60615" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60616" e_stop="60843" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60031" stop="60371"/>
              <exon start="60616" stop="60843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCG : GGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</gDNA_template>
            <first_frame> L  F  F  *  V  K  L  *  *  C  S  E  R  H  *  K  *  V  A  L  *  G  H  *  T  I  S  G  T  K  S  P  M  A  E  L  K  A  H  L  S  F  F  F  *  N  E  H  N  V  E  G  S  I  V  T  T  Y  P  V  *  S  Q  K  V  G  F  G  Q  G  *  S  I  C  R  R  Y  P  Y  L  G  G  K  E  V  V  S  I  D  L  R  F  E  E  K  Q  F  K  A  V  R  M  E  G  A  L  C  I  *  Q  L  Y  T  R :   D  K  G  *  *  W  F  K  A  S  S  L  D  F  L  S  Q  N  C  R  G  C  G  N  W  I  A  S  Y  P  S  E  P  W  S  D  S  W  K  L  E  I  I  K  C  T  L  G  G  R  F  *  V  V  S  Y  R  L  W  P  H  A  I  *  E  S  R  F  S  *  G  I  R  C  F   </first_frame>
            <second_frame>  F  S  S  K  *  S  C  D  D  A  V  K  G  I  E  S  E  L  L  C  E  A  I  R  P  F  Q  A  L  N  H  L  W  Q  S  *  R  H  T  *  V  F  F  S  E  M  N  T  T  W  K  A  L  L  *  Q  H  T  Q  C  N  H  K  K  W  G  L  G  R  D  R  V  Y  A  D  V  T  P  T  L  E  V  K  R  *  F  Q  *  T  F  G  S  R  K  N  N  S  K  Q  F  G  W  K  V  L  Y  A  S  S  N  C  I  L   : G  T  R  A  N  S  G  S  K  P  L  H  W  T  S  C  L  K  I  A  E  D  V  A  T  G  L  L  H  I  H  Q  N  P  G  L  T  H  G  N  L  K  S  S  N  V  L  L  G  A  D  F  E  S  C  L  T  D  Y  G  L  M  P  F  R  N  L  D  S  P  E  E  S  G  A  S  </second_frame>
            <third_frame>   F  L  L  S  E  V  V  M  M  Q  *  K  A  L  K  V  S  C  F  V  R  P  L  D  H  F  R  H  *  I  T  Y  G  R  A  K  G  T  P  K  F  F  F  L  K  *  T  Q  R  G  R  L  Y  C  N  N  I  P  S  V  I  T  K  S  G  V  W  A  G  I  E  Y  M  Q  T  L  P  L  P  W  R  *  R  G  S  F  N  R  P  S  V  R  G  K  T  I  Q  S  S  S  D  G  R  C  F  M  H  L  A  I  V  Y  S  :  G  Q  G  L  I  V  V  Q  S  L  F  T  G  L  P  V  S  K  L  Q  R  M  W  Q  L  D  C  F  I  S  I  R  T  L  V  *  L  M  E  T  *  N  H  Q  M  Y  S  W  G  P  I  L  S  R  V  L  Q  I  M  A  S  C  H  L  G  I  *  I  L  L  R  N  Q  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60296" stop="60371"/>
                    <exon start="60616" stop="60842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFGSRKNNSKQFGWKVLYASSNCILGTRANSGSKPLHWTSCLKIAEDVATGLLHIHQNPGLTHGNLKSSNVLLGADFESCLTDYGLMPFRNLDSPEESGAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="61217" PGL_stop="61559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61217" e_stop="61559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="61217" e_stop="61559" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61217" stop="61559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAGATGGTCAGATACTGTACAAAGCTTGCCAAGAGATGAACATTTGAGCATATGAGTTTGTACTATACTTGTGGAAGCCCCGAATAACGTGTCCTGATTCTTTTGAAAGGCAGAAGTTACTTCGTAAGTTAAGCATTCATCGATGTATCTGAGTTCTCAGGGATTTGTTGATTCAGTTCTTGTAAAGTCTCAAGGACTTTCTACTTTTCTTGCTTTTTCTAGGTTTAGCTGTTTGTATGTAGGAAATTTGCTTTTATACCACTTGGATTGACATTCACTAGTTTATGATACATTCATGATTCAAAAGTTGTCATCATGTTTTGTGAGAGATGTAATTGTA</gDNA_template>
            <first_frame> R  K  M  V  R  Y  C  T  K  L  A  K  R  *  T  F  E  H  M  S  L  Y  Y  T  C  G  S  P  E  *  R  V  L  I  L  L  K  G  R  S  Y  F  V  S  *  A  F  I  D  V  S  E  F  S  G  I  C  *  F  S  S  C  K  V  S  R  T  F  Y  F  S  C  F  F  *  V  *  L  F  V  C  R  K  F  A  F  I  P  L  G  L  T  F  T  S  L  *  Y  I  H  D  S  K  V  V  I  M  F  C  E  R  C  N  C  </first_frame>
            <second_frame>  G  R  W  S  D  T  V  Q  S  L  P  R  D  E  H  L  S  I  *  V  C  T  I  L  V  E  A  P  N  N  V  S  *  F  F  *  K  A  E  V  T  S  *  V  K  H  S  S  M  Y  L  S  S  Q  G  F  V  D  S  V  L  V  K  S  Q  G  L  S  T  F  L  A  F  S  R  F  S  C  L  Y  V  G  N  L  L  L  Y  H  L  D  *  H  S  L  V  Y  D  T  F  M  I  Q  K  L  S  S  C  F  V  R  D  V  I  V </second_frame>
            <third_frame>   E  D  G  Q  I  L  Y  K  A  C  Q  E  M  N  I  *  A  Y  E  F  V  L  Y  L  W  K  P  R  I  T  C  P  D  S  F  E  R  Q  K  L  L  R  K  L  S  I  H  R  C  I  *  V  L  R  D  L  L  I  Q  F  L  *  S  L  K  D  F  L  L  F  L  L  F  L  G  L  A  V  C  M  *  E  I  C  F  Y  T  T  W  I  D  I  H  *  F  M  I  H  S  *  F  K  S  C  H  H  V  L  *  E  M  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64366" PGL_stop="70347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64366" e_stop="64529"/>
            <exon e_start="64664" e_stop="64740"/>
            <exon e_start="65339" e_stop="65439"/>
            <exon e_start="68047" e_stop="68117"/>
            <exon e_start="69405" e_stop="69467"/>
            <exon e_start="69796" e_stop="69840"/>
            <exon e_start="69988" e_stop="70347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.945"/>
          <exon-intron don_prob="0.435" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="64366" e_stop="64529" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64530" i_stop="64663" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64664" e_stop="64740" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.435" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64741" i_stop="65338" i_length="598"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65339" e_stop="65439" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="65440" i_stop="68046" i_length="2607"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68047" e_stop="68117" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="68118" i_stop="69404" i_length="1287"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69405" e_stop="69467" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69468" i_stop="69795" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69796" e_stop="69840" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="69841" i_stop="69987" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="69988" e_stop="70347" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64366" stop="64529"/>
              <exon start="64664" stop="64740"/>
              <exon start="65339" stop="65439"/>
              <exon start="68047" stop="68117"/>
              <exon start="69405" stop="69467"/>
              <exon start="69796" stop="69840"/>
              <exon start="69988" stop="70347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGAGAAAGTATAGTAAGAATCTTAGAGATAAAAAGAAAATTGAGGAAAAAAACGAAAGAGAAATATGTCAATGGCTGCTTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAA : GTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATAT : GGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAG : GTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAA : GTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAG : GAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAG : GCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTGTTTTCCTTGAGGAAAAAAAATGAGGTGAAAGGTGTTGCTTTG</gDNA_template>
            <first_frame> C  H  Y  E  D  L  I  Q  S  F  F  L  L  L  H  L  R  K  Y  S  K  N  L  R  D  K  K  K  I  E  E  K  N  E  R  E  I  C  Q  W  L  L  L  L  S  W  R  I  L  L  C  F  R  N  K :   *  G  V  L  N  R  L  Q  M  T  L  E  I  D  V  K  S  C  I  K  D  V  R  S  I   : W  K  F  L  E  K  H  R  M  E  T  S  C  L  P  N  H  *  R  H  L  V  V  V  W  T  T  L  S  V  C  P  L  E  :  V  Q  S  *  *  S  L  S  L  H  C  V  S  L  L  H  T  R  N  L  S  V  P  K :   *  N  M  C  W  W  I  V  C  A  S  F  C  L  M  I  C  G  M  *  R :   N  P  V  A  G  L  I  K  L  H  P  L  M  T  R :   H  V  K  G  F  L  L  *  R  R  M  H  G  M  K  L  L  L  N  L  K  K  *  A  L  S  L  K  K  V  I  F  V  D  C  S  S  S  Y  V  Y  L  S  I  C  L  T  *  *  G  V  T  *  H  K  L  I  N  V  A  K  I  T  N  Q  K  *  L  V  S  *  L  L  C  V  Q  I  K  L  C  P  K  E  S  Q  N  F  G  L  L  *  V  F  S  Y  R  I  P  L  R  N  H  L  H  A  C  F  P  *  G  K  K  M  R  *  K  V  L  L   </first_frame>
            <second_frame>  A  T  M  K  I  *  F  K  V  F  F  F  F  F  I  *  E  S  I  V  R  I  L  E  I  K  R  K  L  R  K  K  T  K  E  K  Y  V  N  G  C  F  Y  *  A  G  G  F  S  Y  V  S  E  T   : S  E  G  S  *  T  D  Y  R  *  P  *  R  S  M  S  K  A  V  *  R  M  *  E  V  Y  :  G  S  S  W  R  N  T  E  W  R  H  H  V  C  R  I  I  R  G  I  W  W  W  S  G  R  P  S  Q  C  V  P  W  R :   S  N  H  N  E  V  Y  L  C  I  A  *  A  C  Y  I  Q  G  T  Y  P  F  P   : S  R  T  C  A  G  G  S  C  V  P  V  F  V  *  *  F  A  G  C  K   : G  I  P  S  Q  V  *  *  S  C  I  H  L  *  P   : G  T  *  K  V  F  F  S  E  E  E  C  T  G  *  S  C  Y  *  T  *  R  S  K  P  F  L  *  K  R  L  S  L  W  I  V  H  P  L  M  C  I  S  L  S  A  *  L  D  E  V  *  P  N  T  N  *  *  M  L  Q  K  L  P  T  K  S  D  W  Y  P  D  C  Y  V  F  K  *  N  Y  V  L  K  N  L  K  I  L  V  C  F  R  S  F  L  I  G  S  L  *  G  I  I  Y  M  L  V  F  L  E  E  K  K  *  G  E  R  C  C  F  </second_frame>
            <third_frame>   P  L  *  R  S  D  S  K  F  F  S  S  S  S  F  E  K  V  *  *  E  S  *  R  *  K  E  N  *  G  K  K  R  K  R  N  M  S  M  A  A  F  I  K  L  E  D  S  P  M  F  Q  K  Q  :  V  R  G  L  E  Q  T  T  D  D  L  R  D  R  C  Q  K  L  Y  K  G  C  K  K  Y  M :   E  V  L  G  E  T  Q  N  G  D  I  M  F  A  E  S  L  E  A  F  G  G  G  L  D  D  P  L  S  V  S  L  G   : G  P  I  I  M  K  F  I  S  A  L  R  E  L  A  T  Y  K  E  L  I  R  S  Q  :  V  E  H  V  L  V  D  R  V  C  Q  F  L  S  D  D  L  R  D  V  K  :  E  S  R  R  R  F  D  K  A  A  S  T  Y  D  Q  :  A  R  E  R  F  S  S  L  K  K  N  A  R  D  E  V  V  T  E  L  E  E  V  S  P  F  S  E  K  G  Y  L  C  G  L  F  I  L  L  C  V  S  L  Y  L  P  N  L  M  R  C  N  L  T  Q  T  D  K  C  C  K  N  Y  Q  P  K  V  I  G  I  L  I  V  M  C  S  N  K  I  M  S  *  R  I  S  K  F  W  S  A  L  G  L  F  L  *  D  P  S  E  E  S  F  T  C  L  F  S  L  R  K  K  N  E  V  K  G  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64455" stop="64529"/>
                    <exon start="64664" stop="64740"/>
                    <exon start="65339" stop="65439"/>
                    <exon start="68047" stop="68117"/>
                    <exon start="69405" stop="69467"/>
                    <exon start="69796" stop="69840"/>
                    <exon start="69988" stop="70233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKRKRNMSMAAFIKLEDSPMFQKQVRGLEQTTDDLRDRCQKLYKGCKKYMEVLGETQNGDIMFAESLEAFGGGLDDPLSVSLGGPIIMKFISALRELATYKELIRSQVEHVLVDRVCQFLSDDLRDVKESRRRFDKAASTYDQARERFSSLKKNARDEVVTELEEVSPFSEKGYLCGLFILLCVSLYLPNLMRCNLTQTDKCCKNYQPKVIGILIVMCSNKIMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="70583" PGL_stop="75023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70583" e_stop="71066"/>
            <exon e_start="71151" e_stop="71254"/>
            <exon e_start="71336" e_stop="71377"/>
            <exon e_start="74961" e_stop="75023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.625" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="70583" e_stop="71066" e_length="484"/>
          </exon>
          <intron i_serial="1" don_prob="0.625" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71067" i_stop="71150" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71151" e_stop="71254" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71255" i_stop="71335" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="71336" e_stop="71377" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="71378" i_stop="74960" i_length="3583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74961" e_stop="75023" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70583" stop="71066"/>
              <exon start="71151" stop="71254"/>
              <exon start="71336" stop="71377"/>
              <exon start="74961" stop="75023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTT : GATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTG : GGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAG : GTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCAAA</gDNA_template>
            <first_frame> L  K  K  K  K  E  E  T  Q  P  H  A  F  G  K  H  I  F  P  S  S  F  A  C  V  C  F  L  V  V  V  K  *  P  S  Q  K  K  E  C  *  Y  I  F  G  *  S  S  P  R  P  P  Y  W  *  R  L  F  P  E  A  Y  L  R  A  F  T  *  I  D  I  A  P  K  S  R  E  Q  I  V  M  N  *  C  *  R  F  H  L  Y  L  V  L  F  *  C  *  Q  C  P  I  Q  V  F  M  K  Y  V  Q  P  S  V  S  L  C  F  I  L  V  L  I  C  Q  G  K  H  L  K  *  L  G  V  K  T  G  N  W  S  F  T  A  F  S  V  T  G  A  S  *  L  K  V  H  F  *  E  K  P  F  Q  S   : *  F  Q  V  N  A  I  T  N  V  D  A  K  K  K  Y  E  F  L  E  S  F  S  A  I  M  D  A  H  L  R  Y  F  K  L  :  G  H  D  L  L  S  Q  M  E  P  F  I  H  Q  :  V  L  T  Y  A  Q  Q  S  K  E  Q  A  S  I  E  Q  D  K  L  A  K </first_frame>
            <second_frame>  L  K  K  K  K  K  K  L  S  L  M  L  L  V  N  T  S  S  P  L  L  L  R  V  C  V  F  W  L  L  *  N  D  L  H  K  R  K  N  V  D  T  S  S  G  E  A  R  R  G  H  L  I  G  R  G  F  F  P  K  H  I  S  E  L  L  H  K  *  T  L  L  P  S  P  G  N  K  L  *  *  I  N  V  E  G  F  T  Y  I  S  F  C  F  D  A  N  N  V  L  F  R  F  L  *  S  M  S  S  L  L  Y  P  S  V  L  Y  *  C  L  S  V  K  E  N  I  *  S  N  *  E  S  K  L  G  I  G  V  L  Q  L  F  L  *  Q  E  L  H  N  S  K  S  T  F  E  R  S  R  F  N  L  :  D  F  R  *  M  L  S  Q  M  L  M  P  K  R  S  T  S  S  *  N  P  L  V  L  L  W  M  H  I  *  D  T  S  S  W :   V  M  T  Y  *  A  R  W  S  R  S  S  I  R :   F  *  H  M  P  S  S  R  K  N  R  P  A  *  N  K  I  N  L  P   </second_frame>
            <third_frame>   *  K  K  K  R  R  N  S  A  S  C  F  W  *  T  H  L  P  L  F  F  C  V  C  V  F  S  G  C  C  K  M  T  F  T  K  E  R  M  L  I  H  L  R  V  K  L  A  E  A  T  L  L  V  E  A  F  S  R  S  I  S  Q  S  F  Y  I  N  R  H  C  S  Q  V  Q  G  T  N  C  D  E  L  M  L  K  V  S  L  I  S  R  S  V  L  M  L  T  M  S  Y  S  G  F  Y  E  V  C  P  A  F  C  I  P  L  F  Y  I  S  A  Y  L  S  R  K  T  F  E  V  I  R  S  Q  N  W  E  L  E  F  Y  S  F  F  C  D  R  S  F  I  T  Q  S  P  L  L  R  E  A  V  S  I  L :   I  S  G  K  C  Y  H  K  C  *  C  Q  K  E  V  R  V  L  R  I  L  *  C  Y  Y  G  C  T  S  E  I  L  Q  A   : G  S  *  L  I  E  P  D  G  A  V  H  P  S   : G  F  D  I  C  P  A  V  E  R  T  G  Q  H  R  T  R  *  T  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70627" stop="71066"/>
                    <exon start="71151" stop="71181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLPLFFCVCVFSGCCKMTFTKERMLIHLRVKLAEATLLVEAFSRSISQSFYINRHCSQVQGTNCDELMLKVSLISRSVLMLTMSYSGFYEVCPAFCIPLFYISAYLSRKTFEVIRSQNWELEFYSFFCDRSFITQSPLLREAVSILISGKCYHKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71153" stop="71254"/>
                    <exon start="71336" stop="71377"/>
                    <exon start="74961" stop="75023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVNAITNVDAKKKYEFLESFSAIMDAHLRYFKLGHDLLSQMEPFIHQVLTYAQQSKEQASIEQDKLAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89049" PGL_stop="89470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89049" e_stop="89470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="89049" e_stop="89470" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89049" stop="89470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTGTAGATGATCAATTTTTTTCTTCGAATTCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCTAAATAATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGCATATCAGCTCCAAATGACAAAGTTGAGGG</gDNA_template>
            <first_frame> L  I  V  D  D  Q  F  F  S  S  N  S  K  L  N  Y  N  T  H  T  E  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  K  *  F  L  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  S  F  C  N  G  R  G  I  C  E  S  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E   </first_frame>
            <second_frame>  L  L  *  M  I  N  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  I  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  A  Y  Q  L  Q  M  T  K  L  R  </second_frame>
            <third_frame>   Y  C  R  *  S  I  F  F  F  E  F  E  I  K  L  Q  Y  T  H  R  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  *  I  I  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  V  I  L  *  R  Q  G  Y  M  *  V  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  H  I  S  S  K  *  Q  S  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 34768 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2173 bytes was the average size of a spliced alignment
$ 20328 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1694 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-30 17:14:28
-->
