<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-06-14 04:53:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0039G02-OhacD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-gP28Xs/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-gP28Xs/sgn_ests_tomato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0039G02-OhacD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0039G02.1" temp_strand="+" temp_description="C00HBa0039G02.1  CU468248.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0039G02 upload_account_name:france">
        <position start="106131" stop="107230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106431" g_stop="106922" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="515" r_length="494" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0039G02.1" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0039G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106431" e_stop="106922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGGACCGTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTC-TCTTCATTCCCCTCGATGGCAAGTATGATGGACCGTCATAGGCACAACAGTCCGTCGAGGTTCTTCGTTCCAAAACACTTCAACTCTTTGAATATGGGTACT-GGATCACTTCTCTGAAGTTCATGACGAACCTGTAGTACGGACCGTCATAGACACGACGGACCTTCATAGACTCCGTAATCCCACACTTGGTTATACTTCCCCATCTTCCTTCAGCAGTTGCACTATGCTGCCACATACGGACCGTGACAAGCACGACGGGCCGTCATAAGCTCCATAGGTGGTCCCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAACTTTGGACAGATTTCCTGCAATACAAAGAGAAACTTATATAAAAACTAGCACAAAAAGAATTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</genome_strand>
        <mrna_strand>CGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-gP28Xs/sgn_ests_tomato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0039G02-OhacD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0039G02.1" temp_strand="+" temp_description="C00HBa0039G02.1  CU468248.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0039G02 upload_account_name:france">
        <position start="106242" stop="107556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106542" g_stop="107256" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0039G02.1" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0039G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106542" e_stop="107256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTTCTTCGTTCCAAAACACTTCAACTCTTTGAATATGGGTACT-GGATCACTTCTCTGAAGTTCATGACGAACCTGTAGTACGGACCGTCATAGACACGACGGACCTTCATAGACTCCGTAATCCCACACTTGGTTATACTTCCCCATCTTCCTTCAGCAGTTGCACTATGCTGCCACATACGGACCGTGACAAGCACGACGGGCCGTCATAAGCTCCATAGGTGGTCCCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAACTTTGGACAGATTTCCTGCAATACAAAGAGAAACTTATATAAAAACTAGCACAAAAAGAATTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTGAAGCAAGGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAAACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGAAACTAGTGTCCTCTCTTTAAAACAAAATCCTCCTTTTTCATATAATGATTTAAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="106431" PGL_stop="107256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106431" e_stop="107256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="106431" e_stop="107256" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106431" stop="106922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106542" stop="107256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACGGACCGTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCATTCCCCTCGATGGCAAGTATGATGGACCGTCATAGGCACAACAGTCCGTCGAGGTTCTTCGTTCCAAAACACTTCAACTCTTTGAATATGGGTACTGGATCACTTCTCTGAAGTTCATGACGAACCTGTAGTACGGACCGTCATAGACACGACGGACCTTCATAGACTCCGTAATCCCACACTTGGTTATACTTCCCCATCTTCCTTCAGCAGTTGCACTATGCTGCCACATACGGACCGTGACAAGCACGACGGGCCGTCATAAGCTCCATAGGTGGTCCCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAACTTTGGACAGATTTCCTGCAATACAAAGAGAAACTTATATAAAAACTAGCACAAAAAGAATTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTGAAGCAAGGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAAACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGAAACTAGTGTCCTCTCTTTAAAACAAAATCCTCCTTTTTCATATAATGATTTAAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  R  T  V  M  D  S  V  V  P  Y  L  C  N  F  F  C  C  S  L  H  S  P  R  W  Q  V  *  W  T  V  I  G  T  T  V  R  R  G  S  S  F  Q  N  T  S  T  L  *  I  W  V  L  D  H  F  S  E  V  H  D  E  P  V  V  R  T  V  I  D  T  T  D  L  H  R  L  R  N  P  T  L  G  Y  T  S  P  S  S  F  S  S  C  T  M  L  P  H  T  D  R  D  K  H  D  G  P  S  *  A  P  *  V  V  P  S  A  F  L  R  S  K  S  P  H  S  T  L  D  R  F  P  A  I  Q  R  E  T  Y  I  K  T  S  T  K  R  I  L  D  T  L  N  L  R  K  K  Y  *  *  Y  H  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  E  A  R  H  Y  D  S  I  Q  N  L  C  T  I  V  S  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  N  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  K  L  V  S  S  L  *  N  K  I  L  L  F  H  I  M  I  *  V  *  V  *  G  L  </first_frame>
            <second_frame>  D  G  P  S  W  T  P  S  S  H  T  C  A  I  S  S  A  A  L  F  I  P  L  D  G  K  Y  D  G  P  S  *  A  Q  Q  S  V  E  V  L  R  S  K  T  L  Q  L  F  E  Y  G  Y  W  I  T  S  L  K  F  M  T  N  L  *  Y  G  P  S  *  T  R  R  T  F  I  D  S  V  I  P  H  L  V  I  L  P  H  L  P  S  A  V  A  L  C  C  H  I  R  T  V  T  S  T  T  G  R  H  K  L  H  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  Y  K  E  K  L  I  *  K  L  A  Q  K  E  F  W  T  H  *  T  *  G  K  S  I  N  N  T  M  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  Q  G  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  *  N  *  C  P  L  F  K  T  K  S  S  F  F  I  *  *  F  K  F  E  Y  K  D  Y </second_frame>
            <third_frame>   T  D  R  H  G  L  R  R  P  I  L  V  Q  F  L  L  L  L  S  S  F  P  S  M  A  S  M  M  D  R  H  R  H  N  S  P  S  R  F  F  V  P  K  H  F  N  S  L  N  M  G  T  G  S  L  L  *  S  S  *  R  T  C  S  T  D  R  H  R  H  D  G  P  S  *  T  P  *  S  H  T  W  L  Y  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  *  Q  A  R  R  A  V  I  S  S  I  G  G  P  F  C  I  S  S  L  K  I  S  A  F  N  F  G  Q  I  S  C  N  T  K  R  N  L  Y  K  N  *  H  K  K  N  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  *  S  K  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  R  T  *  H  K  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  E  T  S  V  L  S  L  K  Q  N  P  P  F  S  Y  N  D  L  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0039G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106908" stop="107204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHETTVYQHPQLKFVVCPEARHYDSIQNLCTIVSMFYPLQSFGYQSRLISSNLCMLSLLGLNYVGSEHDTNSPCTNTYPLQFLTEVLTIPVLKLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0039G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106639" stop="106851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTFIDSVIPHLVILPHLPSAVALCCHIRTVTSTTGRHKLHRWSLLHFFAQNLRIQLWTDFLQYKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 3568 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1784 bytes was the average size of a spliced alignment
$ 5528 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5528 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 94 backtrace matrices have been allocated
$ 
$ date finished: 2008-06-14 04:56:54
-->
