<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-04 13:38:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0077H15-2apgF/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="13239" stop="14554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13539" g_stop="14254" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13539" e_stop="14254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTTGTTGCTTGTCCTCAAACGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATAACTATTAGGCTTGAATTTTGTAGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATAAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316339" ref_strand="+" ref_description="SGN-U316339        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal targeting signal type 2 receptor (PEX7), identical to peroxisomal targeting signal type 2 receptor (Pex7p) (GI:9502414) (Arabidopsis thaliana); WD-40 repeat protein family member; contains 6 WD-40 repeats (PF00400); similar to peroxismal targeting signal 2 receptor (PTS2R) (Peroxin-7) (PEX7)(SP:O00628) (Homo sapiens) | chr1:10224801-10226191 FORWARD | Aliases: F28N24.6, F28N24_6(evalue: 2e-160, score=562) genbank/nr: gi|28195239|gb|AAO27452.1| peroxisomal targeting signal type 2 receptor [Lycopersicon esculentum](evalue: 0, score=658)">
      <seq>ggacgattttgggggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagaggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaaataatttgaagtttcattgtatttaagattttggtaaaaccttggtaaatgacatttacaccaaacagctttgatgtttcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnccttgggggggggggcgggaacccttttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77158" stop="75149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76858" g_stop="76214" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75452" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="1268" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1287" polyA_stop="1302"/>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-U316339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1268</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76858" e_stop="76214"/>
          <exon e_start="76074" e_stop="75452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAA</genome_strand>
        <mrna_strand>GGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327818" ref_strand="+" ref_description="SGN-U327818        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | 5'-3' exonuclease family protein, similar to DNA polymerase type I (Rhodothermus sp. 'ITI 518') gi:4090935:gb:AAC98908 ; contains Pfam profile PF02739: 5'-3' exonuclease, N-terminal resolvase-like domain | chr3:19315989-19320552 FORWARD | Aliases: F4F15.160(evalue: 2e-21, score=99.4) genbank/nr: 5'-3'(evalue: 6e-20, score=100)">
      <seq>aaattttgttagaatgtgttgaacaagttgaggaggagcaaattaggaaggcattgctgtccgatgcagagctggctagacttagcaaggatctagcaatactacgatgtgatcttccatcctacatggttccttttgtccctgatgacttgatatttgagaaaccagaggatggtggggagaaatttactagcctcttaacagctattagtgcttatgcggaaggattttccgcagataacataattagaagagctttgtatttgtggaagaaacttgagaaacaaactgtagataccattcaccaaaaagttgtatcagctgataagagactcgagtcttgaaaactgatgatgatgtaaagagttcccgattctgtctatagctttttttggctgtacttgtattatagtgagatattaaagagtagtttagcagtgtaattgcttcttttttttttggaaatctctgggaaacacacaacctctaccgttcaggtgagcattctgtagtatgcactttgtggtaaaatgctcactaggcaagctccatgtaacaagctcatctcttcttcaaactctctatgtaactcctaaaatatgaaggttgtagatggattacatgtaaatgattccttcgtttgtcaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="95263" stop="88208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94963" g_stop="94914" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94913" i_stop="90207" i_length="4707">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90206" g_stop="90162" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="95" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90161" i_stop="90078" i_length="84">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90077" g_stop="90003" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="170" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90002" i_stop="88993" i_length="1010">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88992" g_stop="88501" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="662" r_length="492" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-U327818" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94963" e_stop="94914"/>
          <exon e_start="90206" e_stop="90162"/>
          <exon e_start="90077" e_stop="90003"/>
          <exon e_start="88992" e_stop="88501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCGAATTAGGAAGGTAACTCCTGCTAATTTATGATTGTGGTTTATTTAACTTCTCTTGGTAGTGACTTGTTACATGAGATTCACCATTTCCAATTATTCTTTCTTTAATTTTTTCCATTCAAATTGCCTCCTCCAGAGGAAGCCTATGTAAGTTTGTCATCTCTGGGTATCATTTAGACACGGTAGCTGATTAGATTTAATAGTAATCTATAAACAAAGCAATATATCAGTCTTCAATCCACATCTGCTGATCCAGTATTACTGGTCACGTGAACAGGATCCAAATTACTCTGGCTGTGAATTGTTTACACTTTAACTGTTTTGTCCATGTTATTCCTGTTAAATTAGGTCTTAGGCCTAACTCATATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGCCAACCCTTATAAGGAGTCCACCCATCTCATTAACCACCAATGTGAGATTTTTGTTTTTAGCACCCCACCTCACGCCTAGTGCTTAGCATCTCGTGCGTGGAAAACTCACATCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCAACCTTTATAAGGAGTCCACCCATCTCATTAACCACCAATGTGAGATTTTTTTCTTTTAAGACTCCACCTCACGCCTAGTGCTTAACATCTCGTGCGTGGGCAATTTGACCCACCTCATGCCCAGTGCTTAGCATTTGGTGCGCGGGTAGTTTTTGGGCAATTTTTGATTTTTTTTGCGGCCCCAACATCGGGTAAGATGGGCCCTACTATGATACCATGTAAGGATATGGTACCTTGGTCTAACTCAACCCCTAAAGCTAGCTCATGAGGGGAGGTTTGTCCAAGTCCATATAAGGAGACCAAATTTCCATCCTTCTACCAATGTGGGACTTCTTAACACTCCCCCGCACGCCCAGACCTCAAATGGAGCGTGAACACTTCTAAATGGGGGCCCAAAATCGGTGAACAACGAATTGGGATGGGCATGACTTTGATACCATGTTAAATTAGGTGTTAGGTCTAACTCACACCTCAAAAGCTAGCTCAAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCAGCCATCTCATTAATAACCAATGTGGTACTTTTTGCTTTTAACAATTCCCTTAGCTTAAATTATAATACGATTTCCCAATTGTTTTAGACCATGTCTGTTCAATGGACTACCATTGGAATTCACTCTGCTAAAAAAAGAGAAATATGTACAGAAGAGAAGAAGAAAACTAGTTTATCATTTGTGATTTCTGACAATTAAGATATGTTATCTGCCAAATACCATCTTTTAGAAATTGGAGTTTCCTTGCTTTGTACATGATCACAGCATGTGTGTGTCTGTGTTGGCTTTGTACTTTGCAAGAAGCTGGATTTTGGGACTAATTCAACCCCAAAAATTAGCTGAAGAGGGGAATATTGAGCAAATCATTTAAAGAGACCACCTATCCTGTAAATCCTTGATGTGGGAACTCTTCGATCCCCCCCTCCCGTCCAGGGTTGAACATTTGAAGCATCGACAATTTTTATAATATGGTGGCCCAACATCGGGTGATAAGATTTGGAAGAAGTTCTGCTTTGATATGTAAAGAAATGGATTTTATGGATCAAACCTGAAGTAGGCCGTAGTGAGTATCAATCTTATGGATGAAAGCTATACTTGAAAATGGTAAGAATATGGTAGCTATATGTTTGTCTGTCTTCCCCTTCTAAAACAATTGTACTGTTCTACCTCTTTCTGTCTCATCACTTATGCCAGCTTGCCAACCTGTTTCCAATTTTTCCACTATTCCTTGCCATACTCCCTGCTGACCTATGTTCGTCACCGAGAGAGGCCCAACTTCAAGTATGTAGTTGGAAAACCAGCAGTTCTGCATCCTAGGATCTCAGCCAGCTCCAAAATATTGGCAACATTATTAACTGTTGCATCTCTATCTGCCAAATGCCATCTTTTTGGAATTTGAGTCACTTCCCTTTGTATATGGAATCACAGCATGTGCATGTCAGGGTTAGCTTTGTATTTCACAGTTCACCAAATTATAGGATGTGCATACCCTGAAGCAGGCTATAGCGAGTAGAAACAGTCAATCTTTTGGATTAGACCCGTTTTTGAAAGTGGTAATAATGTAGTATTCATATGTTTGGTCTCTCCCCCCCTCCAAAACAATTCTACTGTTGCATCTCTATTGCAGCAATTTTCAATTGATCTTTGAATGGAGCATCTGAAGTATGCAATCGTCTTACATCTGAACTCTTTCGGTTGAGTCTTAGAAATGGTTTGGCATTCCTTTTGTAGGACCTGACAGATTAAAATATAAACCTAATTAAAATGAGACTCTATTCTTTTTAGTTAATCTAATACTTGTATTCTCCTTCTTAGTTTTGTTAGAGAGTTGTATGTAAACCAAATTTTAGAGAACTCCTAGATTGCCTTACAACAACAACACACCTAGTGAAATCCTACTAAGTGGGGTCTGAGGAGGGTTAGGGTATACACAGACTTTTCCACTACCTCGTGGAGGTAGAGAGATTGTTTCAAAAGACCCTCGGCTCAAGCGCATCAAACTAAAATAAAAGAAGAAAACAATGAAGAAATCATAGCATTTAATAAGAAAAGCAGTGTAAAGTCTACAAAGAATAGTTTTCTTTTTTCTTCTTTTCTTTTCTTTATCTTTTGTTTATGCCAGACACACGAGACACACAAGTGTGGAGGGAGGATATGATGTAAATTGTTGGATAACAAATTTGAGCTGATGATTGATATGCAAATGTTACCTTTATAACAAAAAGAAAGTGTACAAGAAAGAACAATAACAACTACAAAATAGTGTGGTAATTAAACCACAATAACATATGGCCAGAACTACAAGGGTACGACTAGTACTATTAAAGGAACTAACAAGCCTAAACATTCCCAAGGCAATACAACAACTGCTAAATTGCCTTAGTGTCCAATTATTCAATATTGGAATAATAAGCCTGAATAGAACTAATTGTTTGCTTGAGGTTTGTTTGAGAACGGAAGATGCTAGGATATCACCAAATCAGTAGATATTGACTTGCTGGTTTCAGAGACGTGCTGATTTTATTTTCCATACCATTTATTCAAATCTAGAAACTTAGGAAAGTTAATTGTAGGGTTATCTGTGATTCTGTAGCAGTTTTTCCTGCTAGTATTTTGATCTTGATCTTCATTCTTCTATTATAAGAAAATGTGTACAACATTCTTTAACAAGAAGTGATTAAAGAGTTCTCCTCAAAAATATTCTCTTTCTCATGGTATGAAAGCTTAGTTGCTCTTTTCTGTCCTTTTTTTATAGAGGCTGGCATCTTGTCGTGAAGTTCCATCTGACTCTTCATGTGCAATCTAAAAACCAGTGTCCACACTCTGTGCAGATTATGACCACTCCATTCATGAAGTAAACTTCCTACGAATCTTGACAATTTTATAAACACTAAGCAACTCTCGCCGAAAAAGTTCTCAAACAAGGCACACCGGCCTTCTGCTTTCTTGTTAACTGTCTCGTATTGGTTAAGGGACACAGATGACCTTGGACAACATCATCTTATGAGCTAGATTTTTGGGGTAGATTCAAGCTCAAGGTCCCTTTTTTTAACATAATATCACAGCTAGACCAATTTCATTTTTTTTTTACCCAATCTTGGTCCCCCATATCAAGTTATCAATGCTCCAATGTCCATCTTTTTTGTTAAGTGCCTTTCCTAAACTAGAAACATCAAAAAGGAAACTTGCTGATGACTTTGATATCAAGGACTTGGGGGTGTTCAAATATATCCTTGTGCTGGAGTTTGCTACGTCTAAGGAAGGTAAATTTGTCAGTCAATGCCCATATGTGCATGACTTGCTCACTGAAACAAGCTTACTTGGTCGCAAATCTGTTGAAACATCGGTTGATCTTGAAGTTACAGTCCGTCAATATATAAGATGTGGTGGGTGCGATACTTAAAGCTTGTTGAAAATAGCAAATTTGCTCCATACCTGTCCAAAAATAACTTCTGCAGTAATCTAGGTGAGTCAATTCATGCATTCACTAAAAAAGTAACTCTTTGATGGTGAGTGCAAACTGTGAGATACTTGTAAGTTGCTAGGGAGTCATGGAAAAGGCTAGTTATTTAAGATATGGACATCTACGAACGGAAGTCTATGCTAATGTAGATTCGGGATAGCTAATGTAAGATCCAGTTCTGGTTGTTGTAACCTTTGTCAGAGAAAATCTCGTGAAATTGTAAGTACTATACAAAATATGGTGGCCAGGAACCAAGAGGTTGTGCAATAATTGAATTTAGACTAGTTGCTCATGTTCGTGAAATGTGAAGTAAACAATTCGTAGAAGTTTTGAATATTTTCAGTATTCTCCCCTGCAAGTATATTGCAATAATAAAACAACAATCTATATTGCGTATAATCTGGTTATTCATGACGGAACAATGCATGCGGAAGTGAATAGGCACTTCAGTCAATAAAGACTTGATAATGGGCTGTCTTGTATGCCATACATACCAACTGCCTGTCAAATTACTAATTTACTTGCAAAGGACTACAAAAGAAGCAAATTGACAGTTTGATAAGCATGCAGGAACTACTCATATTCCTCCTGTCTGTATGTGATCCCTTCCACATTCATGATTCTTCTACTTTGAAGAGAAGATGAGTAATAAGTTAATCTCTTAATTTGATTGGTTAATCTGCTTTCAGGCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTAGTATGTAGTTTTTTCCCTATGATATGTTGTTCTGACCTCATAATTCATCCCACTGCGCACTGAATAAATCTGTCAATTTTGCAGGCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAGGTGAATCATCTTAGTATTTATATTTTCCGTTCCACATCTATAATTTTAAATGCTGTCTATTTTTGGGTGCAACTCTGCAATTCACTTAGAATCAATGTCCTATAAGTATCTCCATGTTTGTTGATGTTTAGAAGCTATTAAAGTGTTGACTAGAGGCCAGCATCCAACCATCCAAGTTTGCATTGCTTAGTGGTGGGTGTCAAATAGTAAAGTGGCTTTCCTTATACTTAGAGTGAGGAAACAGGTTGGAGTTAAGACTTCTAAATTTCTCGCACCATATTTCTAATATATCTGTAGTTATTAATTGGAAGGTATGTTGGCCTTTTAGCCCAAATTTGGTGGGAACTTTTTCAGCCTATAGATGCTCGGAAGGATAAAAAATTGACTTATAATATGACTTCACATTGCTCAATGATACATGTTCCACATCCAATGGAAAATTTATTGGCCAAATCATGGGGCTCATGAACCCATGGTCTTTCCGTAAAACTAGGTATTTTATGTATATATGTTTTCTAAAATTAATATAATTTTATCTGCTAGCACCCGATGATACAAGGTCAAATGGTGCACTTGTTAAATTTTGAGTTGTTCACCTAGAGGATTAGGATCAATTCCCATTGTATACATTATTTTCTTCTTTTTTTAGTGGTGCACCTGTGTTCTAGAAATCCTAGATTCGCCTGTCCACATCAATGAATTTCAAGGTCCACATTGGCAGCAGCTTGAGCAAGTCCATACATTGAAAAGCACCTTGTCTTCCTTAGTGTATGTTGTGGGAGTTTTGATTAGACTGATGCCTGAACCTTGTGAGGGCTACTTCTATTTTCCGAGATTGGCTATATGTCCATTGATAGCTTTTCCTATGAGTGAGTATATTATATTGAAGCTTGAATTTATACAGTTGGCAACAAGCATTAGAAAATCAGTCCAGGAACTTGTAAAAAAATAAAACTGGTGCTGATGCTTAGATGTTTGCTACAATCTGAAAGCTGAGATTTTTTATGCAGGATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCAA</genome_strand>
        <mrna_strand>AAATTTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCAAATTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTA....................................................................................GCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344827" ref_strand="+" ref_description="SGN-U344827        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48210051|gb|AAT40550.1| putative receptor kinase [Solanum demissum] (evalue: 1e-119, score=432)">
      <seq>aaagtacgaatagaaacatcaaactgattttgtatttgaactcatcaaattctgtctgagcaatatgagcattattggatgtttgattaggatgagcaccatatgctactggtggagatgactgtgtacttgcgcgatttcgaaggaactcattatattcgttttgaacaagaggatcataactgggtggtggaccatgcaaaatatgacatatgtcacgagtgtatccagacttatgacaatgactatacttggattgaggtttcccaaaacgtcgtcccccctaccgattctccgtagactgatatgtacgcttttcaaaggtttgagatgcgagaatagaggagtcaacagtgggtgatgaaacgactttgtgactaggaggtgccgcaagacgaaggaggcgagagaataattcatcgattgtagaaattgtagggctagctaaaatctgatcacgcataaaatcgttatcaggaggaagtccagcaagcgtaagaactagaaacaatgtttttctatgttcttgttgtttttccacatccgtagttactggcatcaacatgtcgaattcctccatgactgcctgtacctgtcccaagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-2apgF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="103601" stop="101576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103301" g_stop="103265" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103264" i_stop="102444" i_length="821">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102443" g_stop="101876" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="607" r_length="570" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-U344827" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103301" e_stop="103265"/>
          <exon e_start="102443" e_stop="101876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTACGAATAGAAATACCAAACTGATTTTGTATTTCAGCAAAGAAACTTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAAAAAACCCAAGTACATCTTGAATAATCATCACCGAAACTAACAAAATAACGAAATCCTAAGGTGGAACTGACTCTACTAGGACCCCAAATATCAGAATGAACTAATGAAAAAATAGACTCAGAACGACCCTCAGTATTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAGTTGACACGACTCAATCTAATGTAGATAAACTAGACAAACTAGGCACTATCCTTTGTAGTTTGGATAGACTCGAATGTCCCAGACGTTTGTGAATTAGATCTGGGGAATCTTTAATGGAGCATGTTGTCAATGAATTTGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATTTCCTGTTCCAATAATCTGTCCCGTACTACGGTCCTGTATGAGAAAAAAAAATCATCGAAAAAAGTTATGCTACAATGTAGAGATTTTGTCAAACGACTAATAGATGCTAGATGAAAAGGAGAACCAAGAACATAAAGAACAAAGTCTAGGGTGACAGAAGATAGGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTCTAGATCCCATTGGCTAAAGTAATAGCTGGAAGAGATTGCGAATAAACAATATCGAATAAAAGTGATTTATTACCAGAAATATGATCAAAAGCCCTAGAGCCCACGACCCATGTTCCAATAGTACTACATTGCAACACACAAGCAAAAGAATTACCCGTGACAGACAACATCAGGTTGTGCAATCGAAACTACTTGTGGAGATGTTTGTTTATTTGCACGATACTGAAGGAACTCATCATATTCTATCTGAGCAATATGAGCATTATTGGATGGTTGATTAGGTTGAGCACCATATGCTACTGATGGAGATGCTTGTTTACTTGCGCGATTTCGAAGGAACTCATTATATTCCTTTAGAACAAGAGGATCATAACTGGGTGGTGGACCATGCTAAATATGACATATGTCACGAGTGTGTCCAGACTTATGACAATGACTACACTTGGATCGAGGTTT-CCAAAACGTCTTCCCCCTCGCCGATTCTCCGTAGACTGATATGTACACTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGA-TTT-TGACTAGGAGTTGCCGCAAGACGAAGGAAGCGAGAGAATAATTCATTGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCACAACACAGAATAATTATCAGGAGGAAGTCCAGCAAGAGTAAGAATTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACGTGTTGAGTTCCTCTAAGACTGCCTGTACCTGTCCCAAGTAAGT</genome_strand>
        <mrna_strand>AAAGTACGAATAGAAACATCAAACTGATTTTGTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCATCAAATTCTGTCTGAGCAATATGAGCATTATTGGATGTTTGATTAGGATGAGCACCATATGCTACTGGTGGAGATGACTGTGTACTTGCGCGATTTCGAAGGAACTCATTATATTCGTTTTGAACAAGAGGATCATAACTGGGTGGTGGACCATGCAAAATATGACATATGTCACGAGTGTATCCAGACTTATGACAATGACTATACTTGGATTGAGGTTTCCCAAAACGTCGTCCCCCCTACCGATTCTCCGTAGACTGATATGTACGCTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGACTTTGTGACTAGGAGGTGCCGCAAGACGAAGGAGGCGAGAGAATAATTCATCGATTGTAGAAATTGTAGGGCTAGCTAAAATCTGATCAC-GCATAAAATCGTTATCAGGAGGAAGTCCAGCAAGCGTAAGAACTAGAAACAATGTTTTTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACATGTCGAATTCCTCCATGACTGCCTGTACCTGTCCCAAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13539" PGL_stop="14254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13539" e_stop="14254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="13539" e_stop="14254" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13539" stop="14254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTTGTTGCTTGTCCTCAAACGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATAACTATTAGGCTTGAATTTTGTAGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATAAC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  P  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  A  F  P  I  F  L  Q  Q  L  H  H  A  A  T  Y  G  P  S  Q  E  R  R  T  V  I  S  S  I  G  G  I  F  C  I  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  R  H  T  K  L  K  E  K  V  F  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  C  C  L  S  S  N  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  R  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  S  K  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  P  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  H  R  N  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  R  S  K  S  P  H  S  A  L  D  R  F  L  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  S  D  T  L  N  L  R  K  K  Y  S  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  A  C  P  Q  T  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  *  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  Q  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  *  </second_frame>
            <third_frame>   R  V  F  V  S  K  Y  F  N  S  W  N  L  G  T  G  T  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  S  L  P  H  L  P  S  A  A  A  P  R  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  H  R  W  Y  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  Q  T  H  *  T  *  G  K  S  I  H  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  L  L  L  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  N  Y  *  A  *  I  L  *  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13765" stop="14076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVSSAFFRSKSPHSALDRFLAKQRETYIKISTKRLSDTLNLRKKYSLYRETTVYQHPQLKFVACPQTTHYDSLHNLCTIVFMFYPLQSFGYQSRLISSNLCML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13540" stop="13755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRFKILQLLESGYWDHFSDLHDEPAGRTVIAMTDRHKLRNPTLGQPSPSSFSSCTTLPPTDRHRNDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="76858" PGL_stop="75452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76858" e_stop="76214"/>
            <exon e_start="76074" e_stop="75452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76858" e_stop="76214" e_length="645"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76074" e_stop="75452" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76858" stop="76214"/>
              <exon start="76074" stop="75452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG : GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAA</gDNA_template>
            <first_frame> G  R  F  W  G  K  T  P  F  T  S  G  K  *  I  T  G  N  N  Q  I  S  A  D  R  C  P  P  S  A  D  R  L  R  C  R  Y  L  K  L  H  L  T  V  T  P  *  N  S  V  P  S  T  K  T  N  *  L  W  P  L  R  R  I  S  A  S  L  V  T  G  E  F  T  F  F  S  S  I  Q  T  D  R  Y  R  N  L  R  L  L  T  Q  L  M  E  F  T  T  F  A  G  R  K  L  T  I  H  L  L  L  L  E  V  A  M  V  L  *  N  S  M  T  F  L  C  L  P  P  I  T  L  F  V  L  L  R  N  I  H  G  K  F  T  L  L  T  I  I  P  *  E  K  I  P  S  C  Q  R  L  G  M  I  L  *  S  Y  G  L  L  I  E  M  P  V  *  G  L  L  R  N  M  L  I  V  S  I  P  L  L  G  I  Q  D  M  L  I  S  L  H  L  L  L  G  I  V  L  L  A  S  G  M  S  A  N  Q  :  V  L  Q  *  F  C  L  H  T  S  L  K  S  S  H  V  I  G  V  S  M  T  I  V  S  L  Q  L  H  P  L  I  S  Q  S  R  F  G  M  L  G  I  I  E  C  Q  Y  Q  C  L  M  G  M  D  M  Q  *  G  K  *  G  F  H  H  I  E  R  V  Q  W  F  L  V  H  M  T  *  Q  F  A  C  G  I  T  W  W  K  M  H  L  L  G  G  M  I  I  T  Q  S  L  L  *  E  L  I  *  A  F  S  L  K  V  Y  W  L  V  Q  D  G  M  N  L  F  M  F  G  N  M  E  W  T  L  E  L  L  D  K  G  K  S  N  I  F  F  F  L  L  L  C  T  *  C  *  E  R  K  *  I  N  C  L  C  L  E  T  W  N  G  N  Y  L  *  C  L  L  L  K  L  *  N  N  L  K  F  H  C  I  *  D  F  G  K  T  L  V  N  D  I  Y  T  K  Q  L  *  C  F  R   </first_frame>
            <second_frame>  D  D  F  G  G  K  P  L  L  H  R  E  S  K  S  P  A  T  I  K  S  A  P  T  A  V  R  R  P  P  T  A  *  D  A  G  I  *  N  S  I  *  R  L  L  R  K  I  Q  S  L  L  R  K  Q  T  S  C  G  H  C  A  E  F  R  H  P  W  *  R  E  S  S  H  S  S  A  Q  S  K  R  T  G  I  G  T  C  G  F  *  H  S  *  W  S  L  R  R  L  L  V  G  S  S  R  F  T  C  Y  C  W  K  W  R  W  F  C  E  T  L  *  P  F  F  A  S  H  Q  *  P  Y  S  F  F  *  G  T  Y  T  G  S  S  L  C  *  L  *  Y  R  E  K  R  F  L  L  V  S  V  L  G  *  Y  C  E  A  M  D  C  *  *  K  C  Q  C  K  D  F  *  G  T  C  L  L  C  L  F  R  C  L  E  S  K  T  C  *  Y  L  C  I  C  F  W  G  L  Y  Y  S  H  L  G  C  P  R  T  R :   F  Y  N  D  S  A  C  T  R  V  *  N  P  H  M  *  L  E  *  V  *  R  L  Y  H  C  N  C  I  R  *  *  V  N  Q  G  L  G  C  *  E  L  *  S  A  N  I  S  A  *  W  A  W  I  C  S  E  E  S  E  V  F  T  T  *  S  E  C  N  G  F  L  F  I  *  H  D  S  L  H  V  G  L  H  G  G  R  C  T  Y  W  E  V  *  S  S  H  R  V  C  C  R  S  *  Y  E  R  S  R  *  R  S  I  G  *  Y  R  M  G  *  T  C  L  C  L  A  T  W  N  G  P  *  S  F  L  T  K  G  S  Q  T  F  S  S  F  Y  F  Y  V  L  N  A  K  R  G  S  E  *  T  A  Y  V  W  K  H  G  M  G  T  I  Y  D  V  C  C  *  S  C  K  I  I  *  S  F  I  V  F  K  I  L  V  K  P  W  *  M  T  F  T  P  N  S  F  D  V  S  E  </second_frame>
            <third_frame>   T  I  L  G  E  N  P  F  Y  I  G  K  V  N  H  R  Q  Q  S  N  Q  R  R  P  L  S  A  V  R  R  P  P  K  M  P  V  F  K  T  P  F  N  G  Y  S  V  K  F  S  P  F  Y  E  N  K  L  A  V  A  T  A  Q  N  F  G  I  L  G  N  G  R  V  H  I  L  Q  L  N  P  N  G  P  V  S  E  L  A  A  F  D  T  A  D  G  V  Y  D  V  C  W  S  E  A  H  D  S  L  V  I  A  G  S  G  D  G  S  V  K  L  Y  D  L  S  L  P  P  T  N  N  P  I  R  S  F  K  E  H  T  R  E  V  H  S  V  D  Y  N  T  V  R  K  D  S  F  L  S  A  S  W  D  D  T  V  K  L  W  T  V  D  R  N  A  S  V  R  T  F  K  E  H  A  Y  C  V  Y  S  A  A  W  N  P  R  H  A  D  I  F  A  S  A  S  G  D  C  T  T  R  I  W  D  V  R  E  P   : G  S  T  M  I  L  P  A  H  E  F  E  I  L  T  C  D  W  S  K  Y  D  D  C  I  I  A  T  A  S  V  D  K  S  I  K  V  W  D  V  R  N  Y  R  V  P  I  S  V  L  N  G  H  G  Y  A  V  R  K  V  R  F  S  P  H  R  A  S  A  M  V  S  C  S  Y  D  M  T  V  C  M  W  D  Y  M  V  E  D  A  L  I  G  R  Y  D  H  H  T  E  F  A  V  G  V  D  M  S  V  L  V  E  G  L  L  A  S  T  G  W  D  E  L  V  Y  V  W  Q  H  G  M  D  P  R  A  S  *  Q  R  E  V  K  H  F  L  L  F  T  F  M  Y  L  M  L  R  E  E  V  N  K  L  L  M  F  G  N  M  E  W  E  L  F  M  M  S  A  V  E  V  V  K  *  F  E  V  S  L  Y  L  R  F  W  *  N  L  G  K  *  H  L  H  Q  T  A  L  M  F  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76856" stop="76214"/>
                    <exon start="76074" stop="75668"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TILGENPFYIGKVNHRQQSNQRRPLSAVRRPPKMPVFKTPFNGYSVKFSPFYENKLAVATAQNFGILGNGRVHILQLNPNGPVSELAAFDTADGVYDVCWSEAHDSLVIAGSGDGSVKLYDLSLPPTNNPIRSFKEHTREVHSVDYNTVRKDSFLSASWDDTVKLWTVDRNASVRTFKEHAYCVYSAAWNPRHADIFASASGDCTTRIWDVREPGSTMILPAHEFEILTCDWSKYDDCIIATASVDKSIKVWDVRNYRVPISVLNGHGYAVRKVRFSPHRASAMVSCSYDMTVCMWDYMVEDALIGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQHGMDPRAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="94963" PGL_stop="88501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94963" e_stop="94914"/>
            <exon e_start="90206" e_stop="90162"/>
            <exon e_start="90077" e_stop="90003"/>
            <exon e_start="88992" e_stop="88501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.960"/>
          <exon-intron don_prob="0.987" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="94963" e_stop="94914" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94913" i_stop="90207" i_length="4707"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90162" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.975">
            <gDNA_intron_boundary i_start="90161" i_stop="90078" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90077" e_stop="90003" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.936">
            <gDNA_intron_boundary i_start="90002" i_stop="88993" i_length="1010"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="88992" e_stop="88501" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94963" stop="94914"/>
              <exon start="90206" stop="90162"/>
              <exon start="90077" stop="90003"/>
              <exon start="88992" stop="88501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCGAATTAGGAAG : GCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTA : GCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAG : GATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCAA</gDNA_template>
            <first_frame> K  I  C  *  N  V  L  N  K  L  R  R  S  E  L  G  R :   H  C  C  P  M  Q  S  W  L  D  L  A  R  I  * :   Q  Y  Y  D  V  I  F  H  P  T  W  F  L  L  S  L  M  T  *  Y  L  R  N  Q  R :   M  V  G  R  N  L  L  A  S  *  Q  L  L  V  L  M  R  K  D  F  P  Q  I  T  *  L  E  E  L  C  I  C  G  R  N  L  R  N  K  L  *  I  P  F  T  K  K  L  Y  Q  L  I  R  D  S  S  L  E  N  *  *  *  C  K  E  F  P  I  L  S  I  A  F  F  G  C  T  C  I  I  V  R  Y  *  R  V  V  *  Q  C  N  C  F  F  F  F  W  K  S  L  G  N  T  Q  P  L  P  F  R  *  A  F  C  S  M  H  F  V  V  K  C  S  L  G  K  L  H  V  T  S  S  S  L  L  Q  T  L  Y  V  T  P  K  I  *  R  L  *  M  D  Y  M  *  M  I  P  S  F  V  N  *  N  S  C   </first_frame>
            <second_frame>  K  F  V  R  M  C  *  T  S  *  G  G  A  N  *  E   : G  I  A  V  R  C  R  A  G  *  T  *  Q  G  S   : S  N  T  T  M  *  S  S  I  L  H  G  S  F  C  P  *  *  L  D  I  *  E  T  R   : G  W  W  G  E  I  Y  *  P  L  N  S  Y  *  C  L  C  G  R  I  F  R  R  *  H  N  *  K  S  F  V  F  V  E  E  T  *  E  T  N  C  R  Y  H  S  P  K  S  C  I  S  *  *  E  T  R  V  L  K  T  D  D  D  V  K  S  S  R  F  C  L  *  L  F  L  A  V  L  V  L  *  *  D  I  K  E  *  F  S  S  V  I  A  S  F  F  F  G  N  L  W  E  T  H  N  L  Y  R  S  G  E  H  S  V  V  C  T  L  W  *  N  A  H  *  A  S  S  M  *  Q  A  H  L  F  F  K  L  S  M  *  L  L  K  Y  E  G  C  R  W  I  T  C  K  *  F  L  R  L  S  T  R  I  A  A  </second_frame>
            <third_frame>   N  L  L  E  C  V  E  Q  V  E  E  E  R  I  R  K  :  A  L  L  S  D  A  E  L  A  R  L  S  K  D  L  :  A  I  L  R  C  D  L  P  S  Y  M  V  P  F  V  P  D  D  L  I  F  E  K  P  E  :  D  G  G  E  K  F  T  S  L  L  T  A  I  S  A  Y  A  E  G  F  S  A  D  N  I  I  R  R  A  L  Y  L  W  K  K  L  E  K  Q  T  V  D  T  I  H  Q  K  V  V  S  A  D  K  R  L  E  S  *  K  L  M  M  M  *  R  V  P  D  S  V  Y  S  F  F  W  L  Y  L  Y  Y  S  E  I  L  K  S  S  L  A  V  *  L  L  L  F  F  L  E  I  S  G  K  H  T  T  S  T  V  Q  V  S  I  L  *  Y  A  L  C  G  K  M  L  T  R  Q  A  P  C  N  K  L  I  S  S  S  N  S  L  C  N  S  *  N  M  K  V  V  D  G  L  H  V  N  D  S  F  V  C  Q  L  E  *  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94961" stop="94914"/>
                    <exon start="90206" stop="90162"/>
                    <exon start="90077" stop="90003"/>
                    <exon start="88992" stop="88819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLECVEQVEEERIRKALLSDAELARLSKDLAILRCDLPSYMVPFVPDDLIFEKPEDGGEKFTSLLTAISAYAEGFSADNIIRRALYLWKKLEKQTVDTIHQKVVSADKRLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="103301" PGL_stop="101876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103301" e_stop="103265"/>
            <exon e_start="102443" e_stop="101876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="103301" e_stop="103265" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103264" i_stop="102444" i_length="821"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="102443" e_stop="101876" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103301" stop="103265"/>
              <exon start="102443" stop="101876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTACGAATAGAAATACCAAACTGATTTTGTATTT : GAACTCATCATATTCTATCTGAGCAATATGAGCATTATTGGATGGTTGATTAGGTTGAGCACCATATGCTACTGATGGAGATGCTTGTTTACTTGCGCGATTTCGAAGGAACTCATTATATTCCTTTAGAACAAGAGGATCATAACTGGGTGGTGGACCATGCTAAATATGACATATGTCACGAGTGTGTCCAGACTTATGACAATGACTACACTTGGATCGAGGTTTCCAAAACGTCTTCCCCCTCGCCGATTCTCCGTAGACTGATATGTACACTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGATTTTGACTAGGAGTTGCCGCAAGACGAAGGAAGCGAGAGAATAATTCATTGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCACAACACAGAATAATTATCAGGAGGAAGTCCAGCAAGAGTAAGAATTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACGTGTTGAGTTCCTCTAAGACTGCCTGTACCTGTCCCAAGTAAGT</gDNA_template>
            <first_frame> K  V  R  I  E  I  P  N  *  F  C  I   : *  T  H  H  I  L  S  E  Q  Y  E  H  Y  W  M  V  D  *  V  E  H  H  M  L  L  M  E  M  L  V  Y  L  R  D  F  E  G  T  H  Y  I  P  L  E  Q  E  D  H  N  W  V  V  D  H  A  K  Y  D  I  C  H  E  C  V  Q  T  Y  D  N  D  Y  T  W  I  E  V  S  K  T  S  S  P  S  P  I  L  R  R  L  I  C  T  L  F  K  G  L  R  C  E  N  R  G  V  N  S  G  *  *  N  D  F  D  *  E  L  P  Q  D  E  G  S  E  R  I  I  H  *  L  *  E  L  *  G  *  L  K  S  D  H  N  T  E  *  L  S  G  G  S  P  A  R  V  R  I  R  N  N  V  C  L  C  S  C  C  F  S  T  S  V  V  T  G  I  N  V  L  S  S  S  K  T  A  C  T  C  P  K  *   </first_frame>
            <second_frame>  K  Y  E  *  K  Y  Q  T  D  F  V  F  :  E  L  I  I  F  Y  L  S  N  M  S  I  I  G  W  L  I  R  L  S  T  I  C  Y  *  W  R  C  L  F  T  C  A  I  S  K  E  L  I  I  F  L  *  N  K  R  I  I  T  G  W  W  T  M  L  N  M  T  Y  V  T  S  V  S  R  L  M  T  M  T  T  L  G  S  R  F  P  K  R  L  P  P  R  R  F  S  V  D  *  Y  V  H  F  S  K  V  *  D  A  R  I  E  E  S  T  V  G  D  E  T  I  L  T  R  S  C  R  K  T  K  E  A  R  E  *  F  I  D  C  R  N  C  R  A  S  *  N  L  I  T  T  Q  N  N  Y  Q  E  E  V  Q  Q  E  *  E  L  E  T  M  F  V  Y  V  L  V  V  F  P  H  P  *  L  L  A  S  T  C  *  V  P  L  R  L  P  V  P  V  P  S  K  </second_frame>
            <third_frame>   S  T  N  R  N  T  K  L  I  L  Y  L :   N  S  S  Y  S  I  *  A  I  *  A  L  L  D  G  *  L  G  *  A  P  Y  A  T  D  G  D  A  C  L  L  A  R  F  R  R  N  S  L  Y  S  F  R  T  R  G  S  *  L  G  G  G  P  C  *  I  *  H  M  S  R  V  C  P  D  L  *  Q  *  L  H  L  D  R  G  F  Q  N  V  F  P  L  A  D  S  P  *  T  D  M  Y  T  F  Q  R  F  E  M  R  E  *  R  S  Q  Q  W  V  M  K  R  F  *  L  G  V  A  A  R  R  R  K  R  E  N  N  S  L  I  V  G  T  V  G  L  A  K  I  *  S  Q  H  R  I  I  I  R  R  K  S  S  K  S  K  N  *  K  Q  C  L  S  M  F  L  L  F  F  H  I  R  S  Y  W  H  Q  R  V  E  F  L  *  D  C  L  Y  L  S  Q  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102390" stop="102121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEHHMLLMEMLVYLRDFEGTHYIPLEQEDHNWVVDHAKYDICHECVQTYDNDYTWIEVSKTSSPSPILRRLICTLFKGLRCENRGVNSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 56 chains have been computed
$ 
$ memory statistics:
$ 8880 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2220 bytes was the average size of a spliced alignment
$ 9216 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2304 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-04 13:39:39
-->
