<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 14:38:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324806" ref_strand="+" ref_description="SGN-U324806        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:1804572-1807470 REVERSE | Aliases: T21E18.2, T21E18_2(evalue: 7e-31, score=130) genbank/nr: Double-stranded(evalue: 5e-40, score=167)">
      <seq>atgcttctttgcatgcccattgcatttttgattggaattcacgttttcgatcattgatttttgatctatcaactaaaatctagaactagaactagaatcagatgacggaaaaaatggaggtgacggagaagatgtgtgcaacagaggaagtagttgatgcgttgctggaatgtatggtggagccgttgttagggcgtagttcttgcaaatcaaaggaagttccgacactttatcaacaaaaatccatggctaaacaggtgggtgctgttgtgtttctctacaactactactacaggaagcaacatcaagatcagaaaatagagtttcttaattttgcatcattttgccaattagctgtagttctgaaaccaactttgatgacatatatgaaattaatgcatcgatcagtatacacagacgtggacaatttggaaagccaactttcactcactgagaaggaaattatgagggcatgtgatatatcttcaacgctggatgatgcagaagttgttccgctatcacagaaatggcctacttccaaagttgctgtattcttaattgattcaaggagggagaattgcttgctcatgcatagttctatgacctgcgcagtttggtccattattgagaaacatcttgatgtctcttcaagttatctttttgattcaaagtgcataagcaaaaagaaaaaagctaacatgttttcaaccagtcttcagtatgctgatggatcatcgctccaagatcttgcgctttccgctgccacagaagcaacaggcatcaatagaagtgatctggttgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="4995" stop="9280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5295" g_stop="5551" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6657" g_stop="7176" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="777" r_length="520" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7177" i_stop="8952" i_length="1776">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8953" g_stop="8980" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="805" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U324806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5295" e_stop="5551"/>
          <exon e_start="6657" e_stop="7176"/>
          <exon e_start="8953" e_stop="8980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTACTTGTAGCTTTTTATTTACTCTGTTCATTCATTTGATGTGTTTTTATTTGATTAATTCAATTTGATCTTTTTTTTTTGCAATTGAATTCACTGAGTAAAATTGAAAGATTTCTCGACTAGAACTCTGTGTGAGGTTTCTATGCTTTAATAGAATGTGTATGGAATCTCTGAAGTTTTAGACTATTTGGTGTAATAGAAGGGATTGAAAGGAAAATGATAACAAGATAAACAGTGCAAATGAAGCAACATGTAGTAGTGAAAATTGAAGAAAAAGATACTACCTGAGTATCATCTAATACTACTAAATAAGGAAAAATTGAGAAGAGGAAACTGACCCACTGCCTCTCACACATGAAAGTACGACAACACTTGTCTACCTTTGTACCCTTTATCGTCAACCTCCATACCTTTTCTGTCTAGAGTCATGTCCTCTGTGAATTAAAGATGCGTCATGTTTTGCTGTCTAATCACTTCTGCTAATTCTTTTTCAGTCGACCTCTACCCCTCCTTAGACCTGCTATAGCCAACCTCTCACACCTCTTTCACATGTCCAAACCGTCTCACTCCCACTTCCCTCATCTTGTTTAGCACAGAAGCCACTCCCACCTTCTCATGCATAATCTTATTGCTTATCGTATCTCTTCTAGTATGTCCATACATCAATTTGTTTGATAAAGTTATCATTTTAGGCTTCCAGGCCTTCATCTTCTTATTACTTTTGAGTATTTAATAACTGCAGAAGTGTGCGAGTTTAGAATATTACATGTGGTTTTAAATCTAACATTAAACACAAACTTATCCATTACACATTTTTCTTTTCATCTGTATACTCTAAACTTCTATATCTCATGCAATTGACTTTGGGGAAAGATATTCTGTGATGGGGATGGGTGGATTCTATGTAAATGATTCTAGGGGAAGTGAGCTGCATTATGATTGAATTTAGATTAATCAGTGAGCTAGAATACTCAAGCATGGTATGGAAGTTGAGTAATAAAGGTCATGATATTTTTTGGTTAGTGAGAGACCTTCTTGCAAGCGCTATGGTATGTTTGTTATGTTCTACTTAATCCATTCTTCTACTGGCTGCTGATGTTGGCAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAGGTATATGCTTAATGAGTAATCACAATTCTAGAGTTTTATGTTCTCAAAATTTGCCTTTGGAAGTGATTTTCTCCTTCCCACCAAATTGGGTTTGAACTGATCTTTCCTGTGGTGCCTGTTTATTCTATCAGTACTATGGAAGTAGTTCTTTTGGTTTGTTTGTGCTGCCTATCAGTAGTAAGCAAGTGGTTCTTGTGGTTTGTTTGTGAGAAGTGATGTCCATTGTGGTTCATGTTGTGAAAAGATGTTTCATGCACCTGTCACTCAATGCTACAATGACTACATTTTATTTCTTTTAACTACAATCTCTCTCTCTCTCTCTCTCTATAAAGTAGAATATGAAAACGGTGATGTGGCACCTCTCAATGGCCATCATTATTATTTATCTATTTTGTCAAATTTTTAAGCTTTTATCTCATTTTCCCAAATTAAAAATAAAATATATTCATGATATAAAAGGATGAACGAAATTTTCATTATTCTTACAACCTTACATTTATCTTCTTTTAGTACGATTCTGTTATCATCATAACACCTAAAATAATTAATGTCTTATTCATGACATTATTTGTTATTTCAAATCGTAGTCCTATAAATAGAGACAATAATGATCAGATTAGCATTTTAATTTGTTAAGGTGCTTATTATATTCATACTTCGGTTGACTTGAAGAATAGGATGAAGACTATTGAATGATGATTGACTTATGGGAGTATATGTCGACCAGAACTCGGAAGATTTTGTATATTGATCTCATTTTTTTAAATGATTATGATTGTAAAAATGACGTTGTATTATTTACTTTTTTTTATGCTCTCTCTATAATTACTCTTCATTTTATATTTTATATGAACTTTTTATTATCGTAAGTCTATGATTTCTTTTCTTTCAAAATATAACTCACGATTTTGTTGAAAGTTTACTAACAAACCAAATATTTATACAGATAGATAGAAATGAGAGATACGTATAGTAATATTTAATTTTTAAAAGATGATATCTTATCATCTTTCATAACTGCGCGAAGCGCAGATAAGTTCACAACTACATAATACCAAGGAAGTTGAGGTGGTTTTATGAATCATCACTGTCCATGTCGTTCCAATTAAGTCCGTCTCAGTTCAATTTTATAAAAAAAAATGTTCCACCAAGACTAGAGGTCAAATTATTTTTTATGAATATATACGAGATGGTGAATCTCCTTGACTTCTTCGTGTGTTTGCTCTTTTACATTTTTAATCTTAGTGAAAATTGTGGTTCTGCCACCTACAAAGACCTCAAGTTAATTTACAATAATAACTTAGTTGACAATCATTTTTTTCTTGATATTTAAATTTTTAGTGTATAGGGGTCTGGGCAAAAGGTAATGAGTTCCCGTGAATCCATTGGTTGTGTTCTAGATCTGTCACTGCCCCCATGGGTTCTCTATCTTTGAGTTATAGGAATCTTCCTTACATTTATTTTGTTTGTCTGAAAAATACTCTCAAGTTTGGTTTGATTTTTTGTGTAGCTAGCTGGATTGATCTGTAATTATTTTTATTCCACTAGAATCAGTCATGATTAGTAACCTTTTTCTGCCTTTTGATCTCTTTGAAGTAATTAACTCTGCTACTAGTATACTGAATAATATCCTATCTTTTAAGCAACCATATATTTTCTGCTTAGCCAAAGGCAGCTTCAGATGTAATGTTGGAAATATTGCCATAATACTTCAGTTTATGTGCTGTAATATATGTAGAAGGACTAAATATTTCATGTAATTTGCATTTGAAACAGGCATCAATAGAAGTGATCTGGTTGTCCT</genome_strand>
        <mrna_strand>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGAAGTGATCTGGTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326566" ref_strand="+" ref_description="SGN-U326566        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:1804572-1807470 REVERSE | Aliases: T21E18.2, T21E18_2(evalue: 2e-11, score=65.9) genbank/nr: Double-stranded(evalue: 1e-14, score=82.4)">
      <seq>gaagacgagattgctttgtgtaataaaactattcaggcagaattaaacgggggtgaaaatgaagctcttaaagatgtctgtaatgacatgtgtaaagaagatgaagacagtgccaatcaactggtagaagactcatgtactattcaatatagcaagggaaaaagattgtccgaggctattcttactttgcaaaaccaatgtcagcaactggatcaattctgctgcaggaataattgggtattgccaacatatcaagtctttccacttgagggtggatttcttgccaaggtcattgtaagagctgctgattccaaagttgtcagtagaagcaagatctgtgagagtccgcgcgaagcaagggaatccgctgctgcgcacgtgatttcaagctttcaaaagtgagagtccgcgtgaagcaagggagtctgctgctgcaaacatgaatgcaacgagtagctccgtggtagttcagaatccatagctttgcaaaggggctattactgctctttgcaagttgtaccaaagatcgaatctgtcttgccattttcccctgtaaactcaactcaaaacatgtactcataagttaaactgtgtaagaatgtgtaaacttatagattctagttatgaagaaataccaactgttgtcgactcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="15258" stop="20237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15558" g_stop="15606" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15607" i_stop="16418" i_length="812">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16419" g_stop="16573" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="204" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18591" g_stop="18657" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="271" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19550" g_stop="19948" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="670" r_length="399" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U326566" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15558" e_stop="15606"/>
          <exon e_start="16419" e_stop="16573"/>
          <exon e_start="18591" e_stop="18657"/>
          <exon e_start="19550" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACGGTACGATCTTTTCTCCATTGCTAGCGTGTTTCATCTGAATCAATGAATATTAGATTTTTATAAGACAGGAAGTTCTTTTGTTTCCTTTAAGGCATTACATAGATTGATGTGCCGTGTGCGGCTGTAAGAATGAGTTGAAAAGCAACAAACTGCCAGTTGAAGGTTCCATGTATCATCAGTTTTTTTCTTTTTCTTTTTTTGTTCTCGTATATTCTTGTATTGCTATCTATCTTTTTATTTACAACTTGAAAAAATCAGAAATGAAACTTGCCTTCTCGTGTTTGTTTTCCTGTTTGCTCTTTTTCAAGGATCATATTGTTCCTTACGAGTTGGTAAGGGTTTGTTTTTCTTGTTTTCCTGCCACGACAGTAGTATTTTGTTCTTCAAAGAAGGAAAGAAAATTTGAATATTCCTCAACTAGTTATCTTCAATCAAAGTCTGTTCCTTTTAGAGATGCAGCCCAACATGGATCTAAAAGTTGCATTTTTGATAAGTTTCAAAATTTAATGAGATAAATCAAGACCTATTTGTTTCTTAAAAAAATGATAAATAACGAAAGGAAAATCTTTTATTAGAAATTGCTGACAGTTTTGTGTCACTTTAATTGGAACTGAGAAAAAGAATGGGCAGAAACTATTGTGGTACCTTTTCTCTTATGACAGGTGACATTATCTGTTGCTAATATTTGATGTTTCAATACCCATTATGATACTTTATGTCAGCCTTCGGGAGACTTTTCAGTTGAATAGCAGCAGTCTAATACAATTGGACTGGGAACTGTCAGCATGATTTCCTACTTAATATGTATGCAGGGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAGGCAAGATGAGGCATCCAAATTTGACACATTATTTTTTTTCGCTTTCCTTATTTTCGGTCTGTCTTATTTTTCTTCTTGAGAATGGTAACTGTTAATCTCTATATCCACATGTATACTACATCAGAATATGTTGTCCCCCTTTAAAAGTATTACAACTTACAACTAGATCACCTATTTGTTGCTTTTCCTACAAATACTTTAGAACATCAAAGTAATCTTCTATTTGAGCTAACAGTTCCTGTTTAAACCAAAAGTAATAAAGAGCTAAGCAATTCGTCTTGAACCTCTGCAAATTGCTCTGCTTGTCCTCGAAACATCTTTTATTTATTTCTCTCCATGCTGTCCACCAAAAACATGCTGGGACAATTCCATATCTTCTCCTTTTATGCTCTCTGGCTTCACCTACCTAATCTTTCTCAGGCTGATGAACATCTTCCATAGCTGATCTGTCACTTGCATGTAAAAGAAGATGGTTATGTCTTAGCTTGCTCCCCATATAAGAAGCATCTAGAGCATATGTAAAACTTCTTTTGTTCAGATTCTCAGGGGTCTATGCTGCTTCCTTTGCCAAAAGTCAGGTAAAATAGTTCACTTTATAAGGAACTTTTGTTTTCTAAATCGTCTTCCACGAGCAACTTTCCTACTGAAGATTTGATAAGTTTAGGTCCTTATATGCTGAACTAACAGAGAAGAACAGCCCTTTGATATCTTTCTCCCATACCATAGTATCCCTTTCCCCAGATAAGCTATTGAAAGGTGAAAACTATGTTGTAGAAGGCTTCTATTCTTTCCATTTTGCTATCGTTCAAATGTCTTCAGTTCGTCCTCTGTTGTTGGAAATTTTCTTCATGTTTGATATTTGTAAGATTTCCTTTCCAATATATCGGAAGTCATTATTGAGACACATATTAGACATGCTTGTTTTATTGAACTAAGAAAGATGGAAGTACTTGTTTTGACTTGCATGCATTTTTTTGTTCCTTGTATAAGATTTTGTATTGGGTCAGCGTATGGCATAGTGAAAACTTTCAACTGGTTATTTCTTCCCGAAATCAATTCACTGTTTTACATGTAAAATTTTGGGCTAGCTGTGTTTGCTAAACTAGTTCAGCTGATAATACTCGACTCATGACTTGAAAAGAAGATGGCAGTATTTTCCAGTATGTTAATTTTAGATGATCCAAGAGTTGAGCCATAATTCTGATCTAATTCCTAAGAATCTGAAATCTTCCTTACTTATTTGGTCCAGTTTGACCTCTTTAGTTCCTCCATCATTTTCTTAAGCCAAATCATCTCATAGATTCCAGGGTCAACCTTATGCTTGGTGTCCAAATTATATTTCGGGTTATGGTTTTCAAACTAAATGAACAGCTCATGTGTGGTTAGGGCTATCCCAAGGCTGTAAACCCCTCCAAGTCGACCACTCTGACATTATTCTTATCAAGGGAAAAAACGCATTCACTCCATAGGAAAAGAAAACCACTCTGACATGATTCGATGCTTGTTTTTGACCGTAGCTTAATTAAAGTGTGTATCTATGAGCTTGAGGCGATCAGCAGACTGAGAAAGTCAAGTGGAATGTATTTATATTTGATTAATGAACATTTTATTGATGAGGGACAGCACCAATACAATACTAGTGTATGTCAAGGTTAATAAGAGTGCAAGAAACTGAGTCACTTTGCTTAACATGTAGGAAACTGAAGAAGTCAAGTGAAGTATATTCATATTCATCTAAGCCAAAAATCTATTCAAAAGATATATTTGTATAATGTTTATTTACAAATATAGTATTTGGTTTATAATTCTCAAAAAATAAATAAATATAGTATTTGGTTATATTAGTTGTCTAGCAAATACATAAAAGATGAATGTAATTCTCCCACAAATGCTTTTGAAATGATGTAATTTCACATTCCTATCTAAAAGTATTAGTGTGTTTTCTTCTTTGATCCAATTTATACTTGTTGGATGATTGTAAAACACATGCATTTATGTTTGAATTCTATGTCAGCAGCAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGGGTAAGATGTTAAAGCTTTGCATGTTCCTCAAAAGTCTATATATTTTATATCAATTAGGATACATGCTATTGTCTATTGATGGAAATGATTGGACATTTGATGAGATCTAGCCTAGGAAAAAATTATATTCTAAACTTTTGACCATTTTCCATCCAAATTTTTCGTATTTGTTTGATTTTGATGAATCAATGGATCCTCGGCCTAACTTAACCTCAATAGCGCTCATGAGGGAACGATTGCTCGTGACCTTGTAAGGAGAGATCACAACTCATTCCCTCAACCAATGTTGGACGTAACACACCCCTATACACCTAGTACTGGACAACTGGAGCATGGAGAATATAAGGCGTCAAGAAAGTAGTCTATCCTTGTGGAGACACTCTTTTTTCTTGGTGAGAAATTAGTAGGAAAAGAGAAGAGAATTTGGAAATTAGTGTCTTAATTATTCCCTCAAGCTAATGGGATTAAATAGTGGTTACAAAAAAGGTATTAAGGTAAGAAACTGATAAAAATATTACACTATCTCCTGATTGCCTAATTATGAGGATTTGGCGATTCAACTCAAGCTATCTAATTATACAATATTTAACACTATATTGCTTTCATGGTGGGATATGCAAGTAGGAAAACAAGGGGAGGGATGCTCTGTCAGGGAGAAGCTATTGTTCCTTTACCATCTTGCAGTTGGTTAAGGGGCTGTATTACAGGCAATGTAGTTATCAATTGCCAAATGGTATAGCCCCTCCACTAGAAGGCTTGTCGTAGACTTGGTTAAACCTCTTAACTTCTAATGTTTTTTCTTTCTTATTGTCGTCTCAATTAACCGAGCACTCCAATTCTAAGATGTCTCGCGATGTTGGGCTAATCTTTGTCAGTGTTTGCCCCTGTTAAGGTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATAATGCTCAGCACC</genome_strand>
        <mrna_strand>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346276" ref_strand="+" ref_description="SGN-U346276        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>caagtcacttcatatcaccacaaccttggttgacaccttctctggctgtgacagttccccgcaaactattcctacacaatatcactgtcccattctttgtactgctcattcgatctctctcatgtaaaggtccttgcagtgttcaaagggatacaagagactgaagtggtccttggattggagtattaccctctcagattctgttatgaaaatgctatgagaggccatgtatgttcacacaccatgtagcatagaagatgtttagcagacttgacacaatgagatattcgggagaagaaacaagcctttagtacttaccacttagagcagattatgcgtatgcaacatacgttgtgtgttatgtcatctgttcttagattttgaatttgattgatattggactaaagaaagtatagtttttctttcagtggttttacataagcattcctgtttttgttttctttagagttgattgtgaaatcggagcagaaagccatcaacttcactttaatttgatttagtggtctatgtcttcgcatggtggaagttcctgctcgaatttaagttcaaatcagagatgttaataacttcctctgttgggctatgtgtcaaatatttttcatttgatttttatctttactagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="21502" stop="20263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21202" g_stop="20564" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="658"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U346276" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21202" e_stop="20564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTA---T-ACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</genome_strand>
        <mrna_strand>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTATGTTCACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344206" ref_strand="+" ref_description="SGN-U344206        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G26200.1 | Symbol: None | expressed protein | chr2:11159804-11163544 FORWARD | Aliases: T1D16.16, T1D16_16 (evalue: 8e-65, score=244) genbank/nr: SAM(evalue: 1e-63, score=246)">
      <seq>tacagccagagtgtaaaccaccattacagcagaaggtctcaacagtactgggataagttctacaagctccacaaaaacaagtttttcaaggaccgacactacttagagaaggattggggaagatattttgatgatgaaattgaatcttccaatgggaaggttgttctagaggtgggctgtggagcgggtaatacgatttttcctctcatagctacgtttccgaagctctatgttcacgcctgtgatttctcagctaaagcagtaaccctctttaagtcgcatgcaaattacagttcagaaaagattaatgtctttgtctgtgatgctgcaatggatgatctctgtgctaatgtcatgccttttaccgttgatgttgtaaccttggtaagtgaagggagtaagtaatgataatcatatctgaatatgtattaagtgattaaagcatagtgttcacctaaaagcaatttaataaaccatatatccttccttcgggaaaaatgtatgcctacatgagcatctaactcctttaagtagatatttacattgtctgcagtttcaccatgcaagatggcttcaattctggagaactgtaagcaagtactaaagccaaatggtcacattcttttacgagattatgcagttggtgattctgctcaggtgaaactgcatgacagaaaccagatgattagtgagaacttttacttccgaggagatggaacttgttcgttttacttttccgagacttacgcgtcaaccttgtttcaaagtgctggttttgcaattgtggatattaacacgtactgcaaggaaattacgaaccattctcagaatattaccatgcagaggcgctggatacgtggcatatttggtcgttcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="25060" stop="28799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25360" g_stop="25440" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25441" i_stop="25695" i_length="255">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25696" g_stop="25785" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="171" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25786" i_stop="25860" i_length="75">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25861" g_stop="25965" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="276" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25966" i_stop="26991" i_length="1026">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26992" g_stop="27321" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="606" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27322" i_stop="27425" i_length="104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27426" g_stop="27476" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="657" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27477" i_stop="27792" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27793" g_stop="27855" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="720" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27856" i_stop="27941" i_length="86">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27942" g_stop="28066" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="845" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28067" i_stop="28462" i_length="396">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28463" g_stop="28499" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="882" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U344206" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25360" e_stop="25440"/>
          <exon e_start="25696" e_stop="25785"/>
          <exon e_start="25861" e_stop="25965"/>
          <exon e_start="26992" e_stop="27321"/>
          <exon e_start="27426" e_stop="27476"/>
          <exon e_start="27793" e_stop="27855"/>
          <exon e_start="27942" e_stop="28066"/>
          <exon e_start="28463" e_stop="28499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAGGTATTAAGCTCCGGCCTTGTCAAAACAAGTTTAAAAAGAAATTCAAATCTTCGATGTTATCTCGAGTAACTGGTAAAGTTGTTTGTAATGTGACCGGGACCAGGTAAACAGCCTCTTGCAGAAATGCAAGGTAAGGTTGCATAGATCTTATAGTTCAGTTCTTCCCTGGACCCTGTGTATACTGGGAGTTTTTAGTGCACCGAGCTGCTCTTTTATAATTTTGAATTCAGTGACGTACATTTGCACTTTGGGCAGTTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAGGTAATTTCACTGGTGCTGTAAATGCATCTTACTGTAGTAGTATTTCCCTGAGTTCAACTGAATAGATATTGGCAGGTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCGTTAAGGTTTGTCAACTTTCTTATGTTATGCTTTCATCAATAGTAACCTAGTTTAATCATACTATTCCCTAGACGTTGAACAAATATTCGTAAAGAATCAGCTTTTAGCTACAAGTTATACTACAACAACAGTGTAATCTCACGAATTCGATCTGGGGAGGGTGGTGTGAACGCAGTGTTACCCCTGGCTTTTGGCTACAAGTTATAGTATTTTGGAATTTGTTGGTATTTGCTCTGTCACTGTTTAACGGCTAAGGAGTCCTTCCAATATGGTATGAGTCGTATGAAAAGTAAGTAGATTTGACACGACTCATCATCCGAAAAATGCTACAATTTACTGCTGAAAGAGTAAGGTCCTCAATGGAACTCTATGTCGATCATATCTAAATGTTCTTCTTTTGCGTAGAGGAATTTTTTCACATCTTTGAGATCTTTCATCTGCAACTTTCTAAAATCATTACCAGTAGTAAAAGTATTTTAAGTGTTATGGTTACTTTACGCCTATTGCATTGCCTGTAATCTTGTTGGGATCTCAGTCAGTACACTGGTCGTTTTATCTTAGATTAGCTGCTATATCAGTTTCTTTTCTCTGATTTTTTTTAGCTTCCATTAAATTAGTCTACTTGTTAAGATCAGCAAACTTAAAATATCTCATTTCTTATTCATCACTTTGTCATTTGCATTTAAGTTTACAATATTTCACCTGCATTGCATTTACTGTAATTTGCTTAGGATTTCATTGAGCATCTACATTGTTCCCTCGATGACTCTCTGTAATTTCAATTTTTGTTCTTCAAATTTGTGAGCTTCCATTTGATAAGTCTGTTAACCTCTTGGACTGCTACGAAAAACAGCATCGGATTTCTTGCATTTAATTAATATGTCTGAGGAACTATGCTTGTTCTCTATCGTACAACAAACTCAAAAGTATAATCCTTGCTTTTCTATGACATGATTGTGGCGTAAAGCTACTTATCCTATATGATGGAGTCCCGTGCAAACTCCTAAGTCTCTTTATCATATATGATGCAGTCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCGTATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAGGTAATACATGAGCTATGGAGATGTCTTACCTCATTTTCTTTTTTCTTTCTCTATTATTTGATAATTCAATGGGTGTGCTATGCTATTGCGATCTCATTTTGCAGCCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAGGTAAAGCCCTGTATGTGTAGCCTTTGAACCTTCATATATAAATGATGACGCGAGAGAATTCCCCATGTCTAGCTTCTTCTTTTCCTGAAAGCAGAGTTACATGCTTAACATGAAATAGGTTGAACGTATGAAATACATGAGACAAGAAAAAAAAAGCAATTTCTTTTCCCAGGGGTCTAAAAGAGAGAAAATGGATATGTATAGTCATTCATCTTATAAATTGTTGAAGGCTAAGATTAGGTATTTCTTCACTGTTCTTCGAGTCTGGAACTGCAAGCAATTTTTTGTCATGGAATTTACGCTACGAATGTTTCAGGTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACTGTAAGTATTTTTCCGGGTTTGTTGGGTTATACATGATGTCCCACTGTTATATCAACTTTAATCAAATCCTGTAATTATGGTCTCAGTGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAGGTATATCTCTTTTGATTCCTTTTCCTCGACTGATTGTACTATCATCTTCTATTAAAAAGGGAACATGATTTCTTTAATCAACAAAGTAGAGATCATCCTTGTTGTCATTAGTTTTTCTGAATAATTAAGCTTATTTACTTCAATAGATCTTTGTTCTATTGATATCTACCGAAATTAAGTTAGATATTGGACATGAGTACCTAGTTTCGGAGGAAATGTAAGATGAATGATCGTAGAAAAGCATTACTTTGGTAGTAGTATATTGATATATTCACATGTATTTGCTCTGTTAAATGCTCTACTAGACTACTGCCTCCTAAAACTTTTGTATTCTGAACCTAAGAATTCAAGATTTTTCACTCTCCTGTGCCTTAAAATGTGCTTACATATGGTTAGGCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</genome_strand>
        <mrna_strand>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAG...............................................................................................................................................................................................................................................................TTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAG...........................................................................GTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCATATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAG........................................................................................................CCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAG............................................................................................................................................................................................................................................................................................................................GTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACT......................................................................................TGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326461" ref_strand="+" ref_description="SGN-U326461        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>cataaagaaaaaaagaaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggtaaaagggtttttgttggtaagcttacttttgttactgttttagttgaatttattgtaagtaggaccttttttttttttttttatgttgttgaatggtttgttgcttaaagattcaatttttatctgttgggttggaggaagaagaagagtatatttagtaaatgacctgtattttgagaggtggacatgagttgcctcagatccatgaaacccaagttacatgtggcaaaaaggttgtatctttttagggttttttcatgtgattcttgattagttgtctgttttcttcccattactaggttcttttccatgattctttcactttcacttcttcaattcatggataagggtttgattttgtcgttttccccattttcttgtgtatttaagggttggtggtggtggagctaagatttgctcttcttagtcctgtttcttctcttgaagagagagatataattgcatgattttttagttccaggtacaagaaaggtccccccaactgttctcagtctaggacgtgccatctacagatctgtttatagcaacagatctccttcacactcttgttagtctcacttatctggagcttgttccaccttttctatgatgttggtagtgtaccctttacttctagtagtgagctgttgactgagatctacttgcctcattcaatttttatctctccccatttttgtggattcctacctcgttctccctgtgcttataatttagctgtcttgcacatttttgtggattcctagctcatttcattgtggattcaatttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31609" stop="33058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31909" g_stop="32758" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U326461" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31909" e_stop="32758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACC-TTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</genome_strand>
        <mrna_strand>CATAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316406" ref_strand="+" ref_description="SGN-U316406        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: AT1G72770.1 | Symbol: None | protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA), identical to protein phosphatase 2C (AtP2C-HA) GB:AJ003119 (Arabidopsis thaliana) (Plant Mol. Biol. 38 (5), 879-883 (1998)) | chr1:27393720-27396943 FORWARD | Aliases: F28P22.4, F28P22_4 (evalue: 5e-152, score=535) genbank/nr: gi|51536588|gb|AAU05532.1| At1g72770 [Arabidopsis thaliana] >gi|12323769|gb|AAG51849.1| protein phosphatase 2C (AtP2C-HA); 19519-17666 [Arabidopsis thaliana] >gi|15218595|ref|NP_177421.1| protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA) [Arabidopsis thaliana] (evalue: 4e-150, score=535)">
      <seq>aaaataaaatcttgtaaaggggctgtagctgcaaggtgttttggtaaaagggtttttgttgcttggaacaatttgttgctggtagtgctgcacggactaacgcggttgactcaattgcatattgttttcactagaaagaattaatggaagagatgtctccagctgttgctgttacactcagcttaagcagctctatctgtgataaccctgcaatttcgaaccatgtagaaatcacaaggctcaaattagtgactgacacagctagcttactttcagatcctacatctttgttgcatgctgagtcaaataccagttgggatggaaaaagcaacggtatgaaagttgatgttggtagagttcccttgttgaccctaggagaaagctctggaaaatgtagtctgccgcagactgtattgggagctgaaaatggcctgattgttagcgatagcatcattcagggaagtgatgaagatgagattttatctgttggagaggatccatgtggaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagtttagatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgcccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttgtggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcaaagtttgagtcacctgacatctcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccactgcagttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattggtgacagatatttgaaaccatggataatacctgaaccagaagttatgtttgtaccacgtgctagagaagatgaatgcctagttttagccagtgacggtttgtgggatgtgatgacgaatgaagaagcttgtgaaatggctagacggcgaattctgctgtggcacaaaaagaacgggactaaccctctgcctgaaaggggccagggagtggatcttgctgcacaagcagcagcggagtatctttcatcgatggctcttcagaaaggcagcaaagacaatatatccgtgattgtggtggaccttaaagctcacaggaagttcaaaagcaaaagttagagatgacatgttcactacatttggtttagtataaatctgtacacggcgacgggtataaatctcattattacataactcagtccattaatttttcctatgggcttaaggtgtgtgtatgagaatagtattttagcaatgtattatagaagaaaaaacagttgacaaacgacgtttatccaaattttttggtgtttgttgcgccagaaaatggctatgtaaattgagcatgttgtagcaaatatcagaaatgcaatttcttaaaaaaaaaaaaaaaaaaaaaactcggactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="31624" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31924" g_stop="31984" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31985" i_stop="32816" i_length="832">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32817" g_stop="33735" g_length="919"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="980" r_length="919" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1337" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1443" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36579" g_stop="37173" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="2038" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2039" polyA_stop="2060"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U316406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2038</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31924" e_stop="31984"/>
          <exon e_start="32817" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
          <exon e_start="36579" e_stop="37173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGCTATTTTATCGCACTTGTGAGTTCCCTTCTAAAGCAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</genome_strand>
        <mrna_strand>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACTGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335653" ref_strand="+" ref_description="SGN-U335653        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G72770.1 | Symbol: None | protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA), identical to protein phosphatase 2C (AtP2C-HA) GB:AJ003119 (Arabidopsis thaliana) (Plant Mol. Biol. 38 (5), 879-883 (1998)) | chr1:27393720-27396943 FORWARD | Aliases: F28P22.4, F28P22_4 (evalue: 4e-96, score=348) genbank/nr: gi|3242077|emb|CAA05875.1| protein phosphatase 2C [Arabidopsis thaliana](evalue: 3e-94, score=348)">
      <seq>gaattaatggcgaggagttgttgccactgggcgctagcttgcagttgagcttgccaattgctgttgaaattgagggtattgacaatggacaaatagttgccaaggtcataagtttggaagaaaggagttttgatagaaaggttagtaataccatagttgctcttccagatgatgaaattactagtggccctacacttaaggcatctgtagtggcccttccattgaccagtgagaaggagcctgtcaaagaaagtgtcaagagtgtgtttgaattggaatgtgtgccactctggggttctgtatctatctgtggaaagagaccggagatggaggatgctcttatggttgttcctaatttcatgaaaattcctatcaagatgtttattggtgatcgtgtaattgatggactaagtcatttctatggagtatatgatggtcatggaggatctcaggttgcggattattgccgtaaacgtgttcatctagcattagttgaggaattaaaacttcccaaacatgatttggtggatggaagtgtaagggatacccggcaggtgcagtgggagaaggtttttactaattgctttctcaaggttgatgatgaagttggaggaaaggtcatagatctctgtgatgacaacattaatgcctctagctgcacctctgagcctatagctccagaaactgttgggtccactgcagttgtagcggtgatttgttcatctcatattatagttgctaactgtggggattcaagagcagtcctttatcgtggcaaagaagcagtggcattgtcaatcgatcacaaaccaagcagagaagatgagtatgccagaattgaagcatctggtggtaaggtcattcagtggaatggacatcgtgtatttggcgttcttgcaatgtcaagatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="32960" stop="34941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33260" g_stop="33735" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34032" g_stop="34388" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="809" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34536" g_stop="34641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="915" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U335653" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33260" e_stop="33735"/>
          <exon e_start="34032" e_stop="34388"/>
          <exon e_start="34536" e_stop="34641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG</genome_strand>
        <mrna_strand>GAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTTGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGACCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTATGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGG----A--C------T-A---A---G-----TCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG........................................................................................................................................................................................................................................................................................................GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACTGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA...................................................................................................................................................CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332112" ref_strand="+" ref_description="SGN-U332112        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965 | chr1:27398409-27400461 FORWARD | Aliases: F28P22.2, F28P22_2(evalue: 5e-07, score=50.4) genbank/nr: gi|15218597|ref|NP_177422.1| proline-rich protein family [Arabidopsis thaliana] gi|25406210|pir||G96752 unknown protein F28P22.2 [imported] - Arabidopsis thaliana gi|12323765|gb|AAG51845.1| unknown protein; 15669-13984 [Arabidopsis thaliana] gi|24030251|gb|AAN41301.1| unknown protein [Arabidopsis thaliana](evalue: 2e-05, score=50.4)">
      <seq>aaaagtgccaaacccaagtctttaaacaagcaaaattacaaagtgtccaaaagagctccttttagcctaaatcaatggcagatgatggggaagatatgaccccattttggctacaaaacaccaccaatctccgccgtactgagaggctacgccaccgggtgtcgtctctcttctttaacgcaggactgttgctcattattctgttgttggtgacggcgatcttctttgcagtttttgtagttccttcaacactatctatgtttaaaccaaccaatgtaaagaaaagctgggattctgttaatgtagtgttggttctagttgctgtgatttttggttttctcagcagaaacaacaatgaagataaaaatctcaatcaatatcaacgaacagcttctccgattaacagaaatcaagttcagaaatcgaatccatcaacaccaaatagtagatggtttagtgaagttcgaaatccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="39373" stop="40447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39673" g_stop="40147" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U332112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39673" e_stop="40147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</genome_strand>
        <mrna_strand>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326689" ref_strand="+" ref_description="SGN-U326689        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965 | chr1:27398409-27400461 FORWARD | Aliases: F28P22.2, F28P22_2(evalue: 2e-20, score=96.7) genbank/nr: conserved(evalue: 9e-24, score=114)">
      <seq>tttttttattcaaaatcacacttctttcataacttaggctagtcaagtactacatgaccaacttatcaactgcaacaaagaaacacaaaattaacaaatgttcaatccatagcggaagcttaagtgacctatgatagtttttttttttttaaacaatctctctattttctgtacactaataataactcaaatctcaaatgatgaacaaaaaaaatgacaactttaacaaatcaatcaatgtggtaagaaaaaaatctaactgtggcctactcctgggccgaaatttgataagcttcgtcctaaatcatttttgttgaaggaattgattttttctagctttaatccagctctaaattttgatatgaagttttcagcttttgtgtttacatctgggcttggacaaaacaatggtgacggagcaaacgccatcccttcaccagcgccggcgtcttctgccatcggggtgttttcggctgaatctatatcttcaagttcaggagacccagaacgtgagctgagggtgctgtctattctcaagtagtcgccttgtactacgaatttccaggcgtgttttctgaagaatgggggtggtggaggtggtggtggaattggtatcaacggcgattctcctccgctgtttgggttttcttcgacactgtcgaagcttcttattttcactggctttggtgctggagttctggtgaaaggggtatttggtcttgatatcctaaccggtactgccttgactggcggaggaggtggtggcggtggtggaggtgcatttctctttctggcctttttggatgtgaataagttttgaaacagagaagaaggtggtggcggtggcggaggaggtggtggtggtggagtggaggatgccggccgttggtaatggagaggaggtggttctgatttgtagagaagagcatcaaaattatcaacactttttgatctgttctttctcttctttttgtgatataaagagtttataaactccttcgtcgcacttgcaccacctcttttccgatcacttttactgctcctcggctccacatattgtggtaatggaggcggcggtggcggaggtggtggtggaggaggaagcgtcgccggtgccataataattttagttgcttctcgctcatgattttccctctttttacttgctctctccttcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="42048" stop="40270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41753" g_stop="40570" g_length="1184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1181" r_length="1181" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U326689" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1184</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41753" e_stop="40570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTCTGAAGAATGGGGGTGGTGGAGGTGGTGGTGGAATTGGTATCAACGGCGATTCTCCTCCGCTGTTTGGGTTTTCTTCGACACTGTCGAAGCTTCTTATTTTCACTGGCTTTGGTGCTGGAGTTCTGGTGAAAGGGGTATTTGGTCTTGATATCCTGACCGGTACTGCCTTGACTGGCGGAGGAGGTGGTGGCGGTGGTGGAGGTGCATTTCTCTTTCTTCTGGCCTTTTTGGATGTGAATAAGTTTTGAAACAGAGAAGAAGGTGGTGGCGGTGGCGGAGGAGGTGGTGGTGGTGGAGTGGAGGATGCCGGCCGTTGGTAATGGAGAGGAGGTGGTTCTGATTTGTAGAGAAGAGCATCAAAATTATCAACACTTTTTGATCTGTTCTTTCTCTTCTTTTTGTGATATAAAGAGTTTATAAACTCCTTCGTCGCACTTGCACCACCTCTTTTCCGATCACTTTTGCTGCTCCTCGGCTCCACATATTGTGGTAATGGAGGCGGCGGTGGCGGAGGTGGTGGTGGAGGAGGAAGCGTCGCCGGTGCCATAATAATTTTAGTTGCTTCTCGCTCATGATTTTCCCTCTTTTTACTTGCTCTCTCCTTCTTAC</genome_strand>
        <mrna_strand>TTTTTTTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAAAATCTAACTGTGGCCTACTCCTGGGCCGAAATTTGATAAGCTTCGTCCTAAATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTCTGAAGAATGGGGGTGGTGGAGGTGGTGGTGGAATTGGTATCAACGGCGATTCTCCTCCGCTGTTTGGGTTTTCTTCGACACTGTCGAAGCTTCTTATTTTCACTGGCTTTGGTGCTGGAGTTCTGGTGAAAGGGGTATTTGGTCTTGATATCCTAACCGGTACTGCCTTGACTGGCGGAGGAGGTGGTGGCGGTGGTGGAGGTGCATTTCTC--T-TTCTGGCCTTTTTGGATGTGAATAAGTTTTGAAACAGAGAAGAAGGTGGTGGCGGTGGCGGAGGAGGTGGTGGTGGTGGAGTGGAGGATGCCGGCCGTTGGTAATGGAGAGGAGGTGGTTCTGATTTGTAGAGAAGAGCATCAAAATTATCAACACTTTTTGATCTGTTCTTTCTCTTCTTTTTGTGATATAAAGAGTTTATAAACTCCTTCGTCGCACTTGCACCACCTCTTTTCCGATCACTTTTACTGCTCCTCGGCTCCACATATTGTGGTAATGGAGGCGGCGGTGGCGGAGGTGGTGGTGGAGGAGGAAGCGTCGCCGGTGCCATAATAATTTTAGTTGCTTCTCGCTCATGATTTTCCCTCTTTTTACTTGCTCTCTCCTTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316421" ref_strand="+" ref_description="SGN-U316421        Tomato 200607 #1 [26 ESTs aligned] arabidopsis/peptide: | Symbol: None | threonine synthase, chloroplast, identical to SP:Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana} | chr4:14598311-14601061 REVERSE | Aliases: F27B13.80, F27B13_80(evalue: 0, score=851) genbank/nr: gi|8439547|gb|AAF74984.1| threonine synthase [Solanum tuberosum] >gi|20140867|sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplast precursor (TS) (evalue: 0, score=1048)">
      <seq>tggtcttctcagcttcacaatcacacaacaatggcggcttcttgcatgcttagatcctctttcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccaggtatgttccttttaatgctggtcctacttctgatgaatggtattctctagatgagattgtttatcggagtcggtctggtggattacttgatgttcagcatgatatggatgccttaaagaagtttgatggtcagtattggcgatccttgtttgattctcgtgtcggtaagaccacttggccttatgggtccggtgtttggtctaagaaggaatgggttctgcctgaaattgatagtgatgatattgttagtgcttttgaagggaactcgaatctgttttgggctgagcgttttggcaaacagtttctaggcatgactgatttgtgggtcaaacactgtgggattagccatactggtagttttaaggatcttgggatgactgttttggtgagtcaagttaatcggttgcgcaaaatgcataaaccggtcgtcggtgtggggtgtgcttctactggagacacatctgcggccctgtcggcttactgtgcatctgcaggcattccatcaattgtatttctacctgcgaataagatttctatggcgcaactggttcaacctattgcaaatggggcttttgtgttgagtattgacactgattttgatggttgtatgcagttgattcgtgaagttactgctgagttgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttttcagatgtgcaaagagttgggacttgtggatcgcatccctaggcttgtttgtgctcaagctgccaacgctaatccgctctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacagattggtgacccagtgtctatagacagagctgtttttgccctgcagaactgcaacgggatagttgaggaggccaccgaggaggagttgatggatgctatggctcaggcagactccactgggatgttcatttgcccgcatactggtgtggcattgactgcgctgttcaagctgagaaacagtggagtcattgcaccaactgataggactgtggttgtgagtacagctcatggattgaagtttactcaatccaagattgattaccactcaaaggaaataaaagacatggaatgtcggttttctaacccacctgtggaagtgaaagcagattttggatcagttatggatgttctgaagagctatttgttgagccaaaattccaagctatgatgtgttgtcagttttaaacatagtaagtttgtaatatgtactccttttgtcagcatatggtcatttatcgccattaatttgccgtatagaaatgaccagatggtgattttgttgttggcagagttggggagagaaaggctctacattacttttgagagtactacgaactcgagtccttttatggaactctgttttttgtaacagtctgctttttgtagcattgctttggtgcatcacaatggaaactgccttaatttgacctgttttgttaaattatatgaccttaaagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48111" stop="45631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47813" g_stop="45932" g_length="1882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1882" r_length="1882" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1883" polyA_stop="1895"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U316421" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1882</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47813" e_stop="45932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</genome_strand>
        <mrna_strand>TGGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335661" ref_strand="+" ref_description="SGN-U335661        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | threonine synthase, chloroplast, identical to SP:Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana} | chr4:14598311-14601061 REVERSE | Aliases: F27B13.80, F27B13_80(evalue: 7e-66, score=247) genbank/nr: gi|8439547|gb|AAF74984.1| threonine synthase [Solanum tuberosum] >gi|20140867|sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplast precursor (TS) (evalue: 9e-69, score=263)">
      <seq>gttactgctgagttttctatttacttttcaaattcgttctatcgggggaggttgggagggcaaaagagggcaccaatcgacattttacagcagcttgattgggaaattccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataaaggttctcagatgtgcaaagagttgggacttgttgatcgcatccctaagcttgtttgtgctcaacctgccaacgctaatccactctacttgcattacaaatctggttggaaagacttcaaacctgtgaaggcgaacacaacatttgcatctgctatacaaattggtgacccaaagtctatagacatagctgtttttgccctgcagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="47187" stop="46263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46934" g_stop="46563" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U335661" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46934" e_stop="46563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAAC</genome_strand>
        <mrna_strand>GTTACTGCTGAGTTTTCTATTTACTTTTCAAATTCGTTCTATCGGGGGAGGTTGGGAGGGCAAAAGAGGGCACCAATCGACATTTTACAGCAGCTTGATTGGGAAATTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTCTCAGATGTGCAAAGAGTTGGGACTTGTTGATCGCATCCCTAAGCTTGTTTGTGCTCAACCTGCCAACGCTAATCCACTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAAATTGGTGACCCAAAGTCTATAGACATAGCTGTTTTTGCCCTGCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335660" ref_strand="+" ref_description="SGN-U335660        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | threonine synthase, chloroplast, identical to SP:Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana} | chr4:14598311-14601061 REVERSE | Aliases: F27B13.80, F27B13_80(evalue: 3e-68, score=255) genbank/nr: gi|8439547|gb|AAF74984.1| threonine synthase [Solanum tuberosum] >gi|20140867|sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplast precursor (TS) (evalue: 2e-71, score=271)">
      <seq>ctcgtgcctatattcggcactaggcctctctcctggtcttcctcaacttcatcatcaatcaacttcaaaacccaataatggtattcatttcttcgctccgattaaagctacagccacaaacgatgcgatttctcaacagaagcaccgacgtcctgctgacgagaacatccgtgaagaagcgcgccgtcactgctcatctcataatttttcagccagttgattcgtgaagttactgctgaattgcctatttacttggcaaattcgttgaatagtttgaggttggaagggcaaaagacggcagcaatcgagattttacagcagtttgattgggaagttccggagtgggttatagttcctggtgggaacttaggcaacatatatgcattttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="48051" stop="46471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47751" g_stop="47560" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="216" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47559" i_stop="46947" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46946" g_stop="46771" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="392" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U335660" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47751" e_stop="47560"/>
          <exon e_start="46946" e_stop="46771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAA</genome_strand>
        <mrna_strand>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCGTGAAGTTACTGCTGAATTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318828" ref_strand="+" ref_description="SGN-U318828        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT1G72820.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr1:27406540-27408335 FORWARD | Aliases: F3N23.2, F3N23_2 (evalue: 7e-117, score=417) genbank/nr: gi|18410193|ref|NP_565048.1| mitochondrial carrier protein family [Arabidopsis thaliana] gi|25406215|pir||B96753 hypothetical protein F3N23.2 [imported] - Arabidopsis thaliana gi|5903071|gb|AAD55629.1| Unknown protein [Arabidopsis thaliana] gi|20465267|gb|AAM19953.1| At1g72820/F3N23_2 [Arabidopsis thaliana] gi|23308305|gb|AAN18122.1| At1g72820/F3N23_2 [Arabidopsis thaliana](evalue: 5e-115, score=417)">
      <seq>gcacaagcaagttcactccgattgaatatctccgccgagatcctagattttccggtgagttttccgatctattacgatttgtatagttgaccattatgaatctttctcatatgatgcgattacagaaatgttaggtccttttgctattacccatttccgatccaaaatatggattcgccagcgaaaaaaatctttaccttctccatctagcttcaatttagtagattagacgttgatttgtactgtacatttcccggaaggaataaaagtatcttgtgaaaattgagaccgagacaggaaaactggggaaaatgagtttaggtgtagcggaggaggaatcgggtaaggaaatccagttgccggcggatgtagactggcaaatgctggacaaatctaagtttttcttcctcggcgccgccttattttccggtgtttcagctgtgctttatcctgttgtggtgttgaagactcgacaacaggtagcccaagctcatctttcctgttttagaactgccttatccgttgttaggcttgaaggaattcgtggattgtatcgggggtttgggacttcgttgatgggtacaattcctgctagggcactttatatgactgctcttgaggttaccaagagtagtgttggtacggccacggttaggctcggcattcctgagccaactgcgactgcgttagccagtgctgctgctggattgagcgcagctgtggccgcacaattggtttggactccggtggatgtggtcagccagcggctcatggtgcagcgtgtttgtgctgcaccagcatcctgtaaatatctcaatgggattgatgcttttcgacgaatcctcaagacagatggacctaagggactctacagaggttttgggttttcaattttgacatatgccccatccaatgcactgtggtggacatcctacaccatcactcagcggcttgtctggagtgggtatggatgttacttcagcaagaatggtgatgacagaattgaggataacatcaaaagtactctgaagcctgattcgaagactgttatgatggttcagggagtgagtgcagccatggccggaggtgtttcagcgctgattacaacaccattagacacaatcaagacaagattgcaggtcctggatggcgatgagaatggacggagagggccaacagtagctcagacggtaagaaatttagtaaaggaaggtgggtggatggcttgttacagaggattaggccctcgatgggcttcaatgtccatgtctgcaaccacaatgatcactacttatgaattcctcaaacgcctctccacaaagaatcaagaaaattgggcatagtcatccccatagatagctgtcactcttcttagatttatgtttctctctttgatccatgtataagttttctttttgaatgatccttttttaggaatcagtatgctgagtttagacataaaaaaaacctaaatcaagaacaaaaagaatgatgaatgtacaaagtatgaatctgtataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="49415" stop="51537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49715" g_stop="51228" g_length="1514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1514" r_length="1514" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1517" polyA_stop="1535"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U318828" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1514</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49715" e_stop="51228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</genome_strand>
        <mrna_strand>GCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCCGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328281" ref_strand="+" ref_description="SGN-U328281        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: CTG26(evalue: 4e-06, score=24.6)">
      <seq>acaaaaaagaatgatgaatgtacaaagtatgaatctgtatatatagtccacttcactaaacttatttggctgttgttactgtttctctttccgttaagctaccctatgctttctcttgtgcttgttttaactctcgcggttctttcggaaacagcctctccatctcaatgaggtagggataagcagtgtacactctacttcatctcaatgaactaaagtgggtatgttgctgttgttgtactgagcaatttgtctacttacagatgtgagacttctttttcttccttcaagaactatactttttcgagaatggagccaaaatagttggaagctatccttctcaggcactgatcaaatagtaagatgagaatctgtagtgggcttaattgacttttagctaatctcaaccaatggaagatgagattctgcctgatcatgatgttgatttgaacatgttgcgtgcacaaaggttttagcatatctattcttgatttaatgtgacaagaactcagtcagattgaggttgctcatattgtcggatgagggttgttgtaggctgaaaacctgtgtaaaatttgtcaatttgggaataggagctaggagaggtagagataagtaaaaagagaaagtgattatgtgtattgttattttgttgtctccttccctctattacttctcttttttctttttttctttttgtatgttgagtatttatcgaaaataataccttttatctgttgagataggaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="50894" stop="52246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51193" g_stop="51945" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U328281" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51193" e_stop="51945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAA</genome_strand>
        <mrna_strand>ACAAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321754" ref_strand="+" ref_description="SGN-U321754        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:6939594-6942895 REVERSE | Aliases: F7C8.100, F7C8_100(evalue: 1e-21, score=99.4) genbank/nr: gi|63028790|gb|AAY27262.1| putative alfin-like transcription factor [Solanum tuberosum] (evalue: 5e-20, score=100)">
      <seq>gggcagcggagcctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaagaagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgaattttggatatgttgcgatcattgtgaaacatggttccacggccagtgtgttaagatcaccgctgccacagctgagtatatgaagcaatacaagtgcccgccttgcagcagcaaaagagcccggactcactttacagaatactgatcaacaacagttctcttgctgctaactgtctattcatgatgttttgctaaaatgtctgaagtatgaaactgaagttagactctgttaagactaacttcagtcgttacgtctaaagttgtcccgaattgagtagatgtaccaaaattttataaatttaggacattacttaaacagtgacaccaaaattgtgtctgtgtgtactccccaaccccacccaattttaaacgtatttattttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53337" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53037" g_stop="52480" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52479" i_stop="52293" i_length="187">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52292" g_stop="52261" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="589" r_length="31" r_score="0.781"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U321754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53037" e_stop="52480"/>
          <exon e_start="52292" e_stop="52261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAACGTATTTATTTTTTAAACCACTTGTCTCGCTTTCATTAACTGTGTTTTTTAAATTTCGATTGATTAGGACAAAGTTTTTGATAATATTAAGACTTCTTTTAGAATATCCTGAACAGTTCCGGTAGGTAGGGTTGATGTTATTAAGAAATTAGTTGAATATAACAAGTGAAGCAATCAGTTTTTTTCCACTATATGATTTTTTAGAAAAAAAATAGAAGAA</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC...........................................................................................................................................................................................GTAT-TTATTTTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337449" ref_strand="+" ref_description="SGN-U337449        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:6939594-6942895 REVERSE | Aliases: F7C8.100, F7C8_100(evalue: 2e-18, score=89.7) genbank/nr: gi|63028790|gb|AAY27262.1| putative alfin-like transcription factor [Solanum tuberosum] (evalue: 4e-17, score=91.7)">
      <seq>gggcagcggagcctcacgttttgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatgacgacgacgaagcaggagaataagatgaggatgaatggggtattgagatggatgttgaagaggaggaaggtgagacactgtgcggcatatgtgaggggaagtatgcgaaggatgagttttggatatgttgcgatcattgtgaaacgtggttcctcggccagtgtgttaagatcaccgctgccacagctgagtatgtgaagcagtacgagtgcccgccttgcggcagcatcagagcccggattctttttagagaatacagttcatcaacggttctcttgctgcggactgatctattcatgatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="53337" stop="52361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53037" g_stop="52661" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U337449" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53037" e_stop="52661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTG-TCTATTCATGATGTTTT</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCACGTTTTGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAATAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAGTTTTGGATATGTTGCGATCATTGTGAAACGTGGTTCCTCGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATGTGAAGCAGTACGAGTGCCCGCCTTGCGGCAGCATCAGAGCCCGGATTCTTTTTAGAGAATACAGTTCATCAACGGTTCTCTTGCTGCGGACTGATCTATTCATGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327721" ref_strand="+" ref_description="SGN-U327721        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:9157982-9160357 REVERSE | Aliases: T19G15.60, T19G15_60(evalue: 2e-59, score=225) genbank/nr: nucleic(evalue: 1e-57, score=225)">
      <seq>gtattatcaaattctctcaaactttcttcttcttctctcatatgatttttgacgacgctgcttgtaaccgcagaagtggtgtttaattattttttttaaaaaaagatggaatttggagctaaaggacagaagaaggcaaaacccattgatgtcttcaagaatgtcaagggcagatatactggtctaattaaagctctcacaacagatgtggatgaattttataagcagtgtgatcctgaaaaggagaacttaagcttgtatggactcccaaatgagcgatgggaggtcaatctgcctgctgaagattcaccaccaggccttccagagcctgttcttggtatcaactttgctagagagggaatggaacaaaaggagtggctttcttttgttgcttatcacagtgattcttggttgcttgctattgccttctacgctggtgctagatgtggatttggtaaagccgacaggaagaagctctttgacatgataaatgatttaccttcaatacatgaagtagtgattggtgttccaaagacgcaacaaaaagaaaaacctacagtcgctaatcaaagtaaaaacaaatccaagccnaacgccactaagagggcagcggaccctcaggatatgtttacgaagatgcagcaaaaatatgaagaagatgatgatgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="57569" stop="52665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57269" g_stop="57065" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56983" g_stop="56951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="238" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014">
            <donor d_prob="0.528" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54936" g_stop="54708" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="467" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54707" i_stop="53451" i_length="1257">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53450" g_stop="53315" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="603" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53314" i_stop="53039" i_length="276">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53038" g_stop="52965" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="677" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U327721" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57269" e_stop="57065"/>
          <exon e_start="56983" e_stop="56951"/>
          <exon e_start="54936" e_stop="54708"/>
          <exon e_start="53450" e_stop="53315"/>
          <exon e_start="53038" e_stop="52965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAGGTTTCTTCTTCTTCTTTTTTTTTTTGTTATCATTTTTAATTTTGCTTTATTTAATCGATTTTGTTTTTTTTTTGTATTCAGATGTGGATGAATTTTATAAGCAGTGTGATCCTGGTAAGGATATTTCTTTTTAAGTTATGGTCTCTGTTTTGGGTTATGAGTGGAATAGGGTTGAAAATTTTCTGTTTCTGTAATAATTTGTACTATGTTATATGCATATTGTTAAATTCGGTATTTAAACTCGATGAGTTCAACTTTTAAGGTTAAATTAAGTGCTTTTAAAATTAAGGGTTCCTTAAAAACTGGATACAGTTGTATATGCATAGTATATAAATTTTGGATTATCCATTTTATAAGAAAAATTTGACTCTCCTCCAATGATTGTGGTATGAAAACTCCATCCGCCTTTGGGTTTATGTATTTTCGGATATATGTCTTTTTTCTTTAGATAGACATTGAAAGATTTTGGACAAAATTGAATCAACGAATAAGAACATAAATTCCACCCTCCAATGATCATAGTATGTAAACTCCATCCGCCTTTGGACTCTTGGTGTATGTCTTTTTTTGTAGTTATTTGAAGTTGAAAGATTTTGGAGTAATATTGGGAGAGGCGGATCTAGGATTTCGAGAACCTATATACACTGCTAAACAAAGGGAAACAAAATATATATTAAGTTGGAACTGTTCCTCGTCATTATAGATAAATAGCTCAACGTTCAACCAAGTGTTCATTCAATGCTTTTGGAGCATGGATAGCAACAGATAATTCTAGAAAATTTGTTTGGCGAAGAGATATGGGTTCATGCAGGGGAGGAGCTACATGGTACTTATCGAACCTCCTTCGTCGGAAAACTACACTGTATATAGAACATCGATTTATTCACTTATGAGTATAATTTAATAGTGAACTACCTCAACATAAGCTAAAAGGCTTGTTTCAGTGGTAAACTGCGTTCAAGATTCGGTCAAATCTTCTCGGATACGAGAGTTCGAGTCCGGGTAGCATCGTTCTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTGTGTTCTATCACATTTTATGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACCGAGTCCGGGTAGCATCGTTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACGTAGAATTGAATTTTATCTACTTAATTATATCCGACCTGATCCATTTATATCTGATCCGACCCGTTTATATGTGGGTAATATTAGCGTATTTACTTATTTTTTTGAACCCCTCAATGAAAATCCTGCCTCCACCACTGGGTTCATGTGCACACTATTTCTAGAGTAGAGCCACCCCTGAATATTGGATGATAGAGTAAGAACATCAATTCTACTCTCCAATAATCATTACATTGCTTTTAACATTATTCCATATCAGTGATCTTTTGTTCCTGTATCTAAATTTTTATATATGGAAAGATGAAATTCAAAACATTTTAGTCATTGTTAACCAGAACATAAAATTTCTTATAAAAAATCGTTATGATAAGGTAGATCTGGATATGATTGTTCTCATATCCACAGGCATCATAGGGAAATCTTTACCCCTCCTAGAAGCAGAATTAGAATCAAGTTCGTGCTTAGCTTAAAAGTAACAATTCTAATTCTAAGTCCTTGCTTTTGATTTGATAACTCCTTCCTTGTTTCAGCGGTGAAAAATAAGTATACATAGGATACTAAGCCTTACAGCTGTAATTAATGGTAGATATCGAATGAAGACTTTGTACGTCATGTTTTTGGAAGTGATATTTAGGGTATCAGAGTAATGTCATGATTGCTGGGCCTTCTTTTTATATTGAATACTCTATGTTGCTCGGACTCTTCAAAAATGTTGGTCAGTGCGTTTCAAAGGAGGATCTCACACGGGTGTGGCAGAATTTTGGAGAATCCGAGCAACATCTATTATAAGCTCCCTCCTCACCACACCTCCCTGTCTTCCTCCAAGTTTATTACAGTCAATATGTTTAATCTGTCTTATCTCAAATTGCTTATAACACAGTACTTCTATTTCTTCTTGTTCGTGGTCAAACATATCAACTGTTTTTTTTTACCTTTTTTATGTAGAAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAGGTACTTCTTCTCACTTGAATTTCTTTTATGCAGCCAAAACATCTCCATGCTCGTAAAAGCATCTTTGTGAGCATGTCCTGATGATTGACAATATACGTTTAGCGATTCCGCCTGCTCCAGTACCTCATTTGATGTTTTTTTGTGTTGATTCTGCTTCTCAATGCATTAAAGTTTTTTCTCAATGCTCTCTGTTAAAAGCAGAAGTAATGCATCTGATTAATGTGTTTTAGGTTGGTAATATAATAGTACTTCTAGTATCGAGCTAACACTGCCCGTACAGCCGTGCCTATTACTAGCAAGAAAAGCTAAAAGCAGTAAGCTTGATTAATTTCAATTCATTGCATTTTGCACCTTTGGTGCACATTTTACTTTCTGGGAAAAATCATTTAAGTATTTTTTTGGTCCAAATCTGAATATTTTACTTTTTTAAAATTGAACTATTACCCTATGAAATGAATTTCTTTGCCGAAATTCCTAATAGCACCTCTAGTACTTAAGCAGAAACAATGGAGGATGTTCAGGATATAGAAGTCGTTAATTAGCTTTGTAAGTAATATATCCATTTTACTCCCTATAGAATGTTCATGTTTGAATGGAAACCTATTTTAGTCATTTTGTAAGAAGATAAGAAGTTCGGTAGCAAAAGTGAAAGGAAGGACAGGATGCAAACTGCAAAATATGCATAAAAAAAGAGGTGTGAAAAAAATGCAAATAGCTCGTTCAGTATTACCTTGAATATTAGCTTGCACTTCTTAAAATGAGCTGATAGAATCGCAAGGAGTGGCTGTTAACAGGTTAATAAGATTCAACTAGTTTGGTTTAGTAAAAAGAACATTAACGTGGTTTATTTAGTAGGGCTTGCTCTCAAATTAACGTTGATCATTGACCTCTGGGCTCTGGTTTCTTGACATTGTATGATGAACGTAACTCATGCTTGTCAAGCTGATATCTGAGTCGACCAACCAACAGCAACATTGAATGTATGGTTCAACTTAAATTCATCTCTGCACTTTCGTGTTTGTTATTTGTGAAATCGTTCATAATGGTGATTCTAATGAGAAGCCCTTGTTCTAGATTTTTTCGTATTGAACTTTGTGCATAGAGGATTAGTACATTCAGATTTCTATTAAGCTACCAGTGATAGTCTTTTGCTAGAAAATGTATAGACTGTGCCTCAATTGTGAGACAAGTCATTTTGCTTTAACACTTCATGACGTTTACTATGTTGTTGCTCATTAGTTGCCTTCTGTTTTCCAGGAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCAAACGCCACTAAGGTAAATAATTATGTTCCCAGAGTATGCTTTATTTGCATGTCAGCTCTGTGATACCTTTTTGCGAGTTGGTAAGACTTAAATGATGTGTTTGCAAGCATCCAGATATCAATCTTATGGTCATTTTTGGCAGATTTTGATTCAAATTATGCTTTAAAGTTCTGATTTTCTGGTATCTAGACTAGTTGTTGCATGAATAGCTTGTCTTAAACTAGCTTAAACCCTTCTACCACATTCTTTTTGAGCTATCGATGTTTTCTTTTCCACTTGATAAAACAGAGGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGA</genome_strand>
        <mrna_strand>GTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG.................................................................................ATGTGGATGAATTTTATAAGCAGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCNAACGCCACTAAG....................................................................................................................................................................................................................................................................................AGGGCAGCGGACCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339227" ref_strand="+" ref_description="SGN-U339227        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains PHD-finger domain, INTERPRO:IPR001965 | chr3:14888946-14890755 REVERSE | Aliases: T21C14.10(evalue: 8e-43, score=162) genbank/nr: PHD(evalue: 1e-41, score=163)">
      <seq>gaattggttagcgtattatcaaagtctctcaaactttcttcttcttttctcatatgacttttgacgacgctgcttgtaacccgcaaaatggtgtttaattattttttttaaaaaaagatggaatttggagctaaaggacagaagaaggcaaaacccattgatgtcttcaagaatgtcaagggcagatatactggtctaattaaagctctcacaacagatgtggatgaattttataagcagtgtgatcctgaaaaggagaacttaagcttgtatggactcccaaatgagcgatgggaggtcaatctgcctgctgaagattcaccaccaggccttccagagcctgttcttggtatcaactttgctagagagggaatggaacaaaaggagtggctttcttttgttgcttatcacagtgattcttggttgcttgctattgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="57581" stop="54446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57281" g_stop="57065" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56983" g_stop="56951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="250" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014">
            <donor d_prob="0.528" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54936" g_stop="54746" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="441" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U339227" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57281" e_stop="57065"/>
          <exon e_start="56983" e_stop="56951"/>
          <exon e_start="54936" e_stop="54746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTAAGCGTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAA-CCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAGGTTTCTTCTTCTTCTTTTTTTTTTTGTTATCATTTTTAATTTTGCTTTATTTAATCGATTTTGTTTTTTTTTTGTATTCAGATGTGGATGAATTTTATAAGCAGTGTGATCCTGGTAAGGATATTTCTTTTTAAGTTATGGTCTCTGTTTTGGGTTATGAGTGGAATAGGGTTGAAAATTTTCTGTTTCTGTAATAATTTGTACTATGTTATATGCATATTGTTAAATTCGGTATTTAAACTCGATGAGTTCAACTTTTAAGGTTAAATTAAGTGCTTTTAAAATTAAGGGTTCCTTAAAAACTGGATACAGTTGTATATGCATAGTATATAAATTTTGGATTATCCATTTTATAAGAAAAATTTGACTCTCCTCCAATGATTGTGGTATGAAAACTCCATCCGCCTTTGGGTTTATGTATTTTCGGATATATGTCTTTTTTCTTTAGATAGACATTGAAAGATTTTGGACAAAATTGAATCAACGAATAAGAACATAAATTCCACCCTCCAATGATCATAGTATGTAAACTCCATCCGCCTTTGGACTCTTGGTGTATGTCTTTTTTTGTAGTTATTTGAAGTTGAAAGATTTTGGAGTAATATTGGGAGAGGCGGATCTAGGATTTCGAGAACCTATATACACTGCTAAACAAAGGGAAACAAAATATATATTAAGTTGGAACTGTTCCTCGTCATTATAGATAAATAGCTCAACGTTCAACCAAGTGTTCATTCAATGCTTTTGGAGCATGGATAGCAACAGATAATTCTAGAAAATTTGTTTGGCGAAGAGATATGGGTTCATGCAGGGGAGGAGCTACATGGTACTTATCGAACCTCCTTCGTCGGAAAACTACACTGTATATAGAACATCGATTTATTCACTTATGAGTATAATTTAATAGTGAACTACCTCAACATAAGCTAAAAGGCTTGTTTCAGTGGTAAACTGCGTTCAAGATTCGGTCAAATCTTCTCGGATACGAGAGTTCGAGTCCGGGTAGCATCGTTCTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTGTGTTCTATCACATTTTATGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACCGAGTCCGGGTAGCATCGTTTTTTTTATCACATTTTAGCTTGCTGCTGCTACTTCCTATGTTTTACTGTTCTTGTTGACGTAGAATTGAATTTTATCTACTTAATTATATCCGACCTGATCCATTTATATCTGATCCGACCCGTTTATATGTGGGTAATATTAGCGTATTTACTTATTTTTTTGAACCCCTCAATGAAAATCCTGCCTCCACCACTGGGTTCATGTGCACACTATTTCTAGAGTAGAGCCACCCCTGAATATTGGATGATAGAGTAAGAACATCAATTCTACTCTCCAATAATCATTACATTGCTTTTAACATTATTCCATATCAGTGATCTTTTGTTCCTGTATCTAAATTTTTATATATGGAAAGATGAAATTCAAAACATTTTAGTCATTGTTAACCAGAACATAAAATTTCTTATAAAAAATCGTTATGATAAGGTAGATCTGGATATGATTGTTCTCATATCCACAGGCATCATAGGGAAATCTTTACCCCTCCTAGAAGCAGAATTAGAATCAAGTTCGTGCTTAGCTTAAAAGTAACAATTCTAATTCTAAGTCCTTGCTTTTGATTTGATAACTCCTTCCTTGTTTCAGCGGTGAAAAATAAGTATACATAGGATACTAAGCCTTACAGCTGTAATTAATGGTAGATATCGAATGAAGACTTTGTACGTCATGTTTTTGGAAGTGATATTTAGGGTATCAGAGTAATGTCATGATTGCTGGGCCTTCTTTTTATATTGAATACTCTATGTTGCTCGGACTCTTCAAAAATGTTGGTCAGTGCGTTTCAAAGGAGGATCTCACACGGGTGTGGCAGAATTTTGGAGAATCCGAGCAACATCTATTATAAGCTCCCTCCTCACCACACCTCCCTGTCTTCCTCCAAGTTTATTACAGTCAATATGTTTAATCTGTCTTATCTCAAATTGCTTATAACACAGTACTTCTATTTCTTCTTGTTCGTGGTCAAACATATCAACTGTTTTTTTTTACCTTTTTTATGTAGAAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTC</genome_strand>
        <mrna_strand>GAATTGGTTAGCGTATTATCAAAGTCTCTCAAACTTTCTTCTTCTTTTCTCATATGACTTTTGACGACGCTGCTTGTAACCCGCA-AAATGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG.................................................................................ATGTGGATGAATTTTATAAGCAGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325439" ref_strand="+" ref_description="SGN-U325439        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2220 | CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | chr5:4050843-4053537 REVERSE | Aliases: T24H18.10, T24H18_10, EMB2220, EMBRYO DEFECTIVE 2220(evalue: 5e-09, score=57.8) genbank/nr: gi|45861221|gb|AAS78487.1| CCAAT-box transcription factor complex WHAP13 [Triticum aestivum] (evalue: 2e-08, score=62)">
      <seq>agactggagaaagttatctctttctagctttattgctttggggcgtaatgcctttacacccccacttaagcatcgaaagatatacacatactaaatgttgtgtcatgctgcccttcatttctcattcctttcgaagggcagacattcttattatctaaatcatctagctatttcctgacccacatgatatataaggttgatgaggttgtatttcctatttggcttactagctgttagtgagttaagttattttaaatagccacaactctccttttccctcaactttcacttatttcttttctgacttctgcattttcttactctgatcgtgtggatatctgcttggaccactccaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatacgtatcagacaaattttgctgttgttccttttcctcacccggatccttactatcacgatctagttgctgcctatggaaatccaaccttggttcaatcccaaatgttaggcacggttgctcctcgggtgccacttccacttgaccttaagcaagatgagcctatatttgtcaatgctaaacaatatcaggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61294" stop="58623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60994" g_stop="60547" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="520" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59027" g_stop="58923" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="625" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U325439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60994" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</genome_strand>
        <mrna_strand>AGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338208" ref_strand="+" ref_description="SGN-U338208        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | chr1:27409123-27411630 REVERSE | Aliases: None(evalue: 2e-20, score=73.6) genbank/nr: CCAAT-box(evalue: 3e-24, score=80.5)">
      <seq>gcagccaaatattgtggtgttctgtatacagagagactggacttggacttcttttaccaccaaagattcagaggtgcttgaattctgagtttggttcaaccataaagtttcactaaatcaacaagatttacagatgcaacaaatgtctacatttcctggtcctcagaataccaaggaactgaatcaccattttcaagatcaggattcctcgtctactcaatcaacgagtcaatcatgtcctgaagctcctaatgaacgagaaacaaaaatccatggtaaaaacaatatttctttgcgagcaggcagtgttagaagtagtgggaagtccgatgattcccaaagtgtgtcaagtcaggagcatggttggactttcgatacgtatcagacaaattttgctgttgttccttttcctcacccggatccttactatcacgatctagttgctgcctatggaaatccaaccttggttcaatcccaaatgttaagcacggttgctcctcgggtgccacttccacttgaccttaagcaagatgagcctatatttgtcaatgctaaacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="63070" stop="58633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62770" g_stop="62646" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62645" i_stop="61596" i_length="1050">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61595" g_stop="61419" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="302" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60638" g_stop="60547" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="394" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60408" g_stop="60337" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59027" g_stop="58933" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="561" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U338208" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62770" e_stop="62646"/>
          <exon e_start="61595" e_stop="61419"/>
          <exon e_start="60638" e_stop="60547"/>
          <exon e_start="60408" e_stop="60337"/>
          <exon e_start="59027" e_stop="58933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAGGTTTGTTTATTAAGCTATTTGTTGCATGCAAAAATGGAGTTTTTTTTAATCTTTAACTTGTCCCGAAAGAGGGTTTTTTTTTCTTAGTTAATAATTATTTACTACTTTGTTTTTGTTGATTCTTTGATTCTTTAGGGATATACTAGTATACTACTCTGTTTGTTGCATTTTTCATTTCTTTTGAGTTTTTTAAAAAAAAGTGCATTTGTTTTGTCGGTTCTATGCCTGATTCTTTAGCATCTCTATTCATTGTCGAGAGATTTTACCATTTTTTAACAAGTAAAATTAGGCTCCTTTTTGGGTATAGATTTTGAAGTAGAAACTTGAAAATTTGAGCTTTTGATTTGATTCTTGCAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAATTTTTTGAAGCTTTGTGAATGTAAGTGTCAGAAACCCAAAAATTGGTCTGACACAGTGAGTTTGGAACTTGATATATTTGAAGACCATACTTCCAAAATTTGAGGCTAAACAGATAATTTGAAGATAGCATAGATGTTTCATCTTAGAGTCTCATAAGCAATGGCGAAGCCCAAATTTTCACTAAAGGCGAGTCAGAATAGGAAGAAGTACACACAAAGAAGCCAAGTTGATTCAACATGTAGTATATATAGATTTTAAAAGTTACCTAGCTACACAGTGTAGAAGTGTATTATATCTAAGTCTGAGGATTATGAAGTAATGTCTCAAGTATGTCGTATTTCTGATTTTACAAGTTATAGCCGGGGTAGATGAGGTGAAAGTAAGAAGATCCAATGTGTCAGTGTCATTTGAAGTCTTAAAGGGCAAACTATAAGAAGTGTGCTGGACTGGAATAAAAGTTGGAATATCTCATTTTTGAGCTGTTAATTGCATGTCATATCATCATGTATAAGCTGTAGAAACTCCTGGATGTTTCACTTCTCGAACAAGGACATTCAATGGTCAGAAAATGCAGGATCTCTTCGGAAAGGATCTTGAGCTTAGTAGTATCTCAACCCCATTTATTAGTGTTAATGCTCATCACTGACCTTTGTAGATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTTCGCTTGTTTATTGAGTTAGAATAGAGAGCTCATTTCCAGAAAGTAGGTTTTAATTCTTTGCTAGACAGTGATGATTGAACAGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTTGTGAGTTCATTAAGTTAGTTTTTCCCTACTCTTTTTATACGCAATCTACAACAAAATAACAACATTCTGGGTGTAATCCCACAAGTGGGGATATGCAATCTCTAGTAAATTATTTATGTACTTATTGATCTTTATTAGGCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTGGTGAGTACAATTAAAGCTCAATTATTTTTGTACTGATGATGTGCACTGCTTATTTGGTTTTGTAAGACACTCAGAGAGAGAATTGAACATTTTTTCCATTTGATTGTTTTATCACATTCTCTTCTTTATGATGATCAGCGATTCTTTTGAATAATTCTAGCACAGCGGCTCTAAAAGAGCCATTATGTCATCAATATTTTCACTAGTATTTCAATTAATGACTTTGGTTATGTCATCTAAGAAAAACCTCCCTTTTATATCTGTCTGGCTGATTTTTACATTGACCCCCCCCCCCCTCCCACACACACACACACCACAACACCCTTTTTTGTTGACCCTGAATCTTAATTAACATATGCAACAAACATATGAAACCTGTTGTGGACATTTTCTTGTCTCCAGTGATCTTGACTATCTTAGGGTGAGTAAATCATTCAATCCATTGGATATGGAGCAAGTTATACTATAGTTTTGAGAGGTACTTGTATTTGAAAAACCACCTAACTAGTGAATAACCAGTGTGCTCTAAATAATCACTCAAAAGTGAGAACTTGTTCTCAACTCTTCTTCTCCTCTTTTTTTTTTGTTCCGTAGGAAACAGAACTTTTTTTGGGTAGGTGGGGGGGGGGGGGGGGGGAAGGATGGTGTTATATGGTTCTCTGTATGATATCTAGGTCATGATCCACCTGCAACACCCCCTCGTCCACTACCCCTCCAACCAATTTATAATATTTGATATGTACTTTTAGAATGAATGAAAACCATCTAAAACCACTGATCAGGGTTTGGACTGACTTAATCTGGTATCAGCACTTTTAAACTTATTCTTCAAAGGAATTAGAGATGTGCTCAACTTGTGTTGGCTTTGCATTTCTGTCAAGGATCATCAGTAAATTCTAGAAAAGGTCTATGCCATTTTAGAGTTCTTTGGATTATCCTAATCACTTTGCATCTGCTTTACTTTGATGATTCCTTGCTTTTTTTGGCCAACTTATTCTTTGAAGAAGGAAAGTCCACTCATATGTTCATGTGAATTTAAATATTATAATACCAAACATGAGATCCTTTGTACAGACTTGTTCGATTATATATTTGCATTAGCTACATTAAAATATCAAAGGCATCTCCAATTAGTGGTATAAGTATGTGGTCCCCATTCCTTAGTTTCTCTCTTATATAGATACCTATAGTTATCTTTCATGTCAAGCTGCCCATGATTAATCAAGTCTTTTGTTACGCTTGTATTTGTTTAAGCCAGTGTGATCTGCCGATGCACCCCGTGGGATCCTTACCTTTTAGTTTTCTTCAGGTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</genome_strand>
        <mrna_strand>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT..........................................................................................................................................GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATCCCAAATGTTAAGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338209" ref_strand="+" ref_description="SGN-U338209        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agatcaggattcctcgtctactcaatcaacgagtcaatcatggcctgaagctcctaatgaacgagaaacaaaaatccatggtaaaaacaatatttctttgcgagcaggtgaggatattcactattgttctgcatctagttttatatatacaacactttaagttatgtcagagaagttttgaaacaaagtaatcgtgttcatgattagcttgtttataactttttaccatacatcaattaggagaagctaattgataggagtgttgaagagaaatttgcaaattgattgtctagtacgtttatcaatttaagtacttccatgttgttcctccaaatgtgatcggctacaaccttttaaatgtggtggattgtaagtacttgttagcctgctaaggaggcaccacagaaatgaacttgaaatgtcggtacaaggcctgtactgcagattggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="61825" stop="60775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61525" g_stop="61075" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U338209" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61525" e_stop="61075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</genome_strand>
        <mrna_strand>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGGCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTACGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGCTACAACCTTTTAAATGTGGTGGATTGTAAGTACTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329948" ref_strand="+" ref_description="SGN-U329948        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: CID3 | ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. | chr1:20224727-20229613 REVERSE | Aliases: F15I1.27, F15I1_27, CID3(evalue: 1e-20, score=97.4) genbank/nr: Ataxin-2,(evalue: 5e-24, score=114)">
      <seq>aaaagatcacaggttcttttagtgaaaagggggctgttgggtcttccaagagtcgagacaacacccgatctgttaattcttgtgttagacctagcagttctgctttatcttctattgatagagcaggtgctgcatctagcaatggattatcacgtagctcttccgtgagttcattatcttcagaaaaatccacgaagtccacattaaatccacatgctaaggaatttaaatttaatcccagtgcaaagagctttgtcccatctcaagcgactttgaggccgacatctccagtgtctgataattccttctactatccagctgggatggctgctatgccacacatgcatggcatgtctatgggcttaggggttggtccatcgtttgctggacatcagtctgttgtatataatccacagggtacccctgtgccacagccatattttcatccaaatggacctcagtatggacagcagatgatgattggtcaccctcggcaagttgtctacatgccaacttatccccctgagtcaccgtacaagggaaggggagagtattgaccagttcttggtgatctgcattgcttggtggcttaaccctttgctgatattggaaacaaaattctgacagtagattgcatggatcatttgttggtgcattaattcttctgataaaatagctgcaatctgcacctgctggctgaaatggttttgttagcactcctgtataatgacgaattaattattctgcttttcataatcgtagtgttctagctcttaggtgttctttgtcatcatactacagattatttttcatcttttgggtttcttcaactttttttttttccttggaaaatatttaaccagcctcctatattgtcttattacttgntnaanaaaaaaaaaaaaaaaaaaaaaaaanancccctgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="67217" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66917" g_stop="66697" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66568" g_stop="66422" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="368" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65603" g_stop="65511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="461" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65365" g_stop="65303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="524" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64100" g_stop="63736" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="890" r_length="366" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63735" i_stop="63613" i_length="123">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63612" g_stop="63576" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="927" r_length="37" r_score="0.459"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63575" i_stop="62943" i_length="633">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.572" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62942" g_stop="62935" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="935" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U329948" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66917" e_stop="66697"/>
          <exon e_start="66568" e_stop="66422"/>
          <exon e_start="65603" e_stop="65511"/>
          <exon e_start="65365" e_stop="65303"/>
          <exon e_start="64100" e_stop="63736"/>
          <exon e_start="63612" e_stop="63576"/>
          <exon e_start="62942" e_stop="62935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAGGTAAGAGTTCTTCTTTGATACCTTTTCCTATCCAGCAAACCATGATGGTCAGCAAGCAGTCATTTCACAGTTTTAATGGGCTCTTAGCTTACACCATCCAGTTATGCTTATGTTGAATTTTCTGTCAGGAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGGGTAATGATACTTGAGGTTATTACTGCTTGGTGTTGCGTTTATGATGCTGCTTTTTGTTTATATGGGTACTTTTAAGCCCGTATGATCTGGTTTGGACACATTTCATTTGATAGAGTTGGATCAATATAGAATCGAAGTACGATATAGGACTTGCAAATGATCATATCTCTTACTTTTTTTTCTTAAAAAAGATTCATAGTATGGTAATTTCTCTTGGTGGAATAATGGACACTGAATCTTTTGATAGTTAATTCAAAATATTACTTATATATTTACCATAGTGGTGTTAAAATGAATATTTTGTGGTCACTTCATCCTGAAATATTTGGTGTTACCTCATCCTTTATTTGCCGAGGACGTGGACGAAGTTCGTGGGTTGCAACATAAGGACTTCCGAGGGGGTCATCCTTCCTAGTACTTTGCCCAAGCACACTTGACTTGGGAGTTTTATGGTTAATCAACATAAAAGGGGTATAGAAAGAGATTAAAGTAACAGCCACCTGATTTTGCATGAGCCCTTAATTGATTTTTTTTCCAGTTTCCACTGGTAACTGTATCATGGCTGCAATTCTGTTGACTAGTGAGGACTGATCCTTTTTAGAGTAGATGTTTGGAGTACTCTTCAGGAACAAAGATACGAGATTGAATTGCAAGCTGTTCCCAAATTTGATAGATAGACGGTGAAGTTCATAAATTTTTGAATCTGTTTGTGTCTTGTGTGATTGGGCATGCTGTTGCTTCTCTCTCATTGTGTCTAACTATTTCCATTAGGGGTGGCGGTGTTTCTGGTGTTGAATGTTGTCACATACTATGTGCAGGTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAGGTTCGTCATTATCTCGACCATTTCCCTTTGTATGTGCCTGATTGTTCTGCCTGTACTATTTGAGATTTGGTTAATGCACTAATCATTGTGCCTATTTAATTTAAGTGGATTGCATAATGCTTTAAATTTCTTCCTTCGGTTTCAGTATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCTGTAAGAATCTTTTCTTTGCAATTGTACCTTCTACTTTTTCAGTATTGCGCAGTTACAGTCTTCTGGCCATTTTAGTAGCTCTCAATGTGATGGTCTATTTTGGGTACCTTGTTTGACAATGAGTTAATGATCACAATGGTCCTTGTCAAAAATGGTAACGCTAAAGAGGAATTTTACCAAAAATACAAGGCAATACAATAACAATAATAAGTAATAACTATGCCTTAATACCGAGCAAGTTATCGGTTATATGAATCCATAATATCCAAGTCACTGCATTTGAATTTGTCTCTATCCAATATGATAAAACAAAATTTGTTCTTATAGCACTAGAAATTCTCTACTTTCTGACATGGTAGCATGACTAAGTTAGACCCAACTAATTGGTATCTCCTGTTGAGATCTTTTTTTCCATACCCTTTTTTTCCGCTAGGTCTGCTTAGATCTCAAGAGATTGTAGGTCTTGGGGGGATGTCTTCCTTTCTTTCATGTGAGTTTGGGTCTACCTCAGTTCCTTTTAACTCATACAGTTACCAATTTACCATGGTTTGAGGTTTTACAGGACCTACATCCAAAGGTTGATATAAGACATTCTTTTCAAGGAAAAGTTCTCATTAATAATAACTAGGCTAAACTTGGCCATAAACGAGAGGCATACCAAAAAGGGGGAAACATACAAAACATGGTTTTCTCCAAAAGACACCGTAGCCTCCATACAAACAGGAACTACAATGGGTGTGTTACGACCCGTTTTTAGCTAAGTCATAAATGCTTCATAATTTGGCTATTTATTTTGCAAAAATAGAAGAGCTGTCACATAATTTCTAATGGAATTAGTAAATTAGTCACCGCCTCCAAGCCGAGATTAATGCAACCACTTCATCTAGACTACTTATGATATAAGTTAATTTAATGCCAAAAAAAATAATTATTTATGACATTACCTGTTTCAATAAATAAAAATAGAAAATAATTACTTATGATCATTCAAGTTATTGTAGATGCATTTGGGGAAATGAACACTGTCAAGTAAAGTTGTTGTAATGTAGTAGAATTATGTTTCTTAATCTGATGTTGCAGTGATTTATTTCGTATCTTTAAATGTCAACAGTACTTGCAAAAAGATCTTGTGTGCATATGATAATAGGATTACATACTATTAGCTTTTAGCTTTCTTTCTTTATCTGTCTGGATGCCAACAGGAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAAC-TTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACATGATAGTTTGGTGTGTAAAATGATGGTTCTATGGACAAATCTTTGCAGTTCTTGTCAAGTCTGATTTTAGTATTGGTGTCACTTCCTGCATTTTAACTGTTATCCTTGTCTTTGCATATTCGTGGCACTGTTAAAGAAGAGGAGGCATAGATAGATAGTCCTTTGGTGACATGTTATTAAAATGCAAAAAAAGAATCCATTTTTTTTCATTATTATATTAACCTACGGGTCCTAATTTCTCTGAAGTGATTAAAGCTTAGAAATAATATACCAATAAATAACATAAGTCTAATTTCAATCTTTAATGTATTCCGTATGGTAATTTATCATTCGTTTTCAAACCGTTACTCAAATAATCCATATTTTTTCATTATTGTATTAACCTACGGCTCCCAATTTTCTATTAAAATTGTGATTTTGTTTTACAAAAAATAATTTATAAAGATGCTTCCCATTAAAATTTTCCTCTACTATTAAAAGATACATCAGGTGATTTCCAATTATGTGAAGTTTAATGTTAGTTATTCCATTTTATCCATATATTATATTATTAGTTATATGAATTTCTAAATAAAACAAAGAAGGTGTATTTTAACAGTAATTTTTTTTTTTTTAACCTTTTTAGAGCTTTCATCCTTTTTGTTTTCTTGGTGATTTAAATTTGCAATCAAATTAAAAATGACAATGTTTATTATTTGAATAACTTTCGTCTATTTTAATCATTATAATTATATTACTCATAAAAAATTTAATACCGTCATAACTAATCTCGAAACAAATCTCTTTTTATTATGTTAGAGGAAGAG</genome_strand>
        <mrna_strand>AAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAG................................................................................................................................GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG.................................................................................................................................................TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAACTTTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACTTGNTN...........................................................................................................................AANAAAAAAAAAAAAAAAAAAAAAAAANANCCCCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330711" ref_strand="+" ref_description="SGN-U330711        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: CID4 | hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | chr3:4636373-4640977 FORWARD | Aliases: MDC16.14, CID4(evalue: 1e-17, score=86.3) genbank/nr: gi|18400244|ref|NP_566471.1| expressed protein [Arabidopsis thaliana] gi|15028199|gb|AAK76596.1| unknown protein [Arabidopsis thaliana] gi|19310731|gb|AAL85096.1| unknown protein [Arabidopsis thaliana](evalue: 6e-16, score=86.3)">
      <seq>agagaactagttgagtttatctttcaatttttcttcgacacagagcatcgtcgtctccgatcaatcccctttcttgatcgccaccttcaatctctctagatatctatatatatttatctatttatctattctgtgtagggtgaagctgagctgaactgtatcttgcttatatctttcggggacaatatgcagcaagctgttcagtcaaggtcctttgccaatggatttggcagtcgcaaaggcgaaaaagaaatggggacaaggttggagagtaaaatgcagtctacaaaaacgacttccagcaagtcgacagctgtaggtaaagggggatcatacgaaagtccttcacatgatcgactagtttattttagtacatgtcttcttggacatcaagtggaagtacaaacaacggatggatctgtgttttcagggatatttcatgcaacaaatgctgacaaagattttggtattattctgaaactggcccacttgataaaagatggttccctggagagtaagaatactcctgaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="74865" stop="72116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74567" g_stop="74446" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74445" i_stop="73701" i_length="745">
            <donor d_prob="0.667" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73700" g_stop="73693" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="131" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73692" i_stop="73017" i_length="676">
            <donor d_prob="0.609" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73016" g_stop="72829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="319" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72759" g_stop="72613" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="466" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72484" g_stop="72416" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="535" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U330711" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74567" e_stop="74446"/>
          <exon e_start="73700" e_stop="73693"/>
          <exon e_start="73016" e_stop="72829"/>
          <exon e_start="72759" e_stop="72613"/>
          <exon e_start="72484" e_stop="72416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTA-TTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCGAATGTGGGTTAGTATCGAGACTTTGGGGTTAGGGTTTTTATATTGATTAGGAAAAGGTTGATTGTGTCAGTGGGGGGTGGGGGATGGGGGAGGACCAAGATTGCTCCAAGATTTTAGAACTACTGCCAGTCAACCAGACCCTAAAGGTTTTCTATCGTTTCTACATATCTTGCTCAGGTGTTTTCCTTACTTTCAGGTGGTTAGCCAAGATTCTTGATCATAGTTTTGCTGCAATTACTTGCTTTAGTAATTTTGGATTCTTCTAATGAGTTTACCTAGGCCAGGTACTAAGACTGATGGAGGGTTTTTACTTACCTGAGAAGCCATTTACTAAGGCCTAGTTTCATGTCTCTGTTTGAATTAGGCAGATAGATATGTGCTTAGGGAATGTGTCAAAGTCATAGCTTTCCATTTGTAAGAGACAATGTTAAGATCTAAGCTAGTGAAGTTTCCAATACTTTTTTAAGTGTTGATATTCCTCTGACTCTCCTCAGGGTTGATACATTATTGATGAACCTAAAAGTGCAGTTATTCATCAGGAAGAACATCCGCTATAGAACCAAGAGCATTGATTACATGTTGATCGGCTATATTACCAACCGGAAGTCTTTTTGTTGCCCACGTGTAATTTTTATTGTATAGTATGTTCCATTTTAAATTTTAGTGATGATTTTGTTTTGATCTCAAACTAAGAAGAATATTGTTGGGGTGGAGGTAGGGGTTGAACCGTTGAAGTCCTTTGTGTTGTAGGGTATTTGAACTTGTCTAGTACGTACAATTGCTAACTTGCCTAATTATTGTTTGTGAGACACGTTTTCTCCTGAAAACAACTCTTGCAGAAGCACAAGGTTAGGCTCTGTATGATAGTTCCTATTCGATATGACTCTTCTTTAGACCCACTGATAGAGCAGGGACTTAGTGCGCCTGGATGCCGTTTGTATCGTTCTTTTTCCGTGTACTCTTACATGTTCTCTGCTCAAACTTGGTGTGTGGATAGACAATATGTCATATCTGAGAAAGAATATGCTTCATTAGCATTTTCATCTATTGGGCAAGGACAACATATTTATTGGAGTATTGTCCTCTGCAGTGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAGGTGAGAGCTGCTAATTGAGAATTGTCTAAATTGCTTCATATGCTTAATTCTAACTGCCATAACTTACAGGTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTGGTATGTCTGAAAAATTAAAATAGATTTCTAGATTATTTTATCTGGTATTTATGCCTTTGAAGATTGCTCTGGCATGTATTGAGCTATTTTGCATTTGGCACTTTATTCTTTCCTTGATTTTTGGACAGGTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTC</genome_strand>
        <mrna_strand>AGAGAACTAGTTGAGTTTATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG.....................................................................GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG................................................................................................................................GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320342" ref_strand="+" ref_description="SGN-U320342        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr5:4393065-4397544 FORWARD | Aliases: T6I14.2(evalue: 0, score=1021) genbank/nr: gi|37785695|gb|AAP47635.1| putative lecithine cholesterol acyltransferase [Medicago truncatula](evalue: 0, score=1023)">
      <seq>ttcagccgttgccggcggcggcttccggtggtctctgttcttatagaatataggaagctctctccgtatgttatgttaattgaagtaaaataaaagataaagagatgtcgttattacgaagaagaaaagcacctgaaaatgaaattcaaccggatgtggagccaaagcttgatgcggaagaagacgataagaagagtaggaagaagaatgtgaagtctggaaagaagaagaaatggtcgtgtatcgataattgctgttggttcgtaggatgcatatgttgtgtgtggtggattttgttgtttttatacaatgctatgccggcgtcgttcccgcagtatgttacggaggcgattacaggcccgttacctgatccaccgggcatcaagttgcagaaggaagggttgaaggctaagcatccggtggtatttattcctggaattgtcacgtgtggacttgaactgtgggaaggacatcagtgtgctgaaggattgtttcggaagcggctttggggcgggacttttggagaagtgtacaaaagaccactatgctgggtgaaccacatgacattagataatgaaactgggatggatcctcctggtattagagttaggccagttagtggacttgttgctgcagattactttgctccaggatactttgtctgggcagttttgattgctaacttggctcgaattggatacgaggagaaaaccatgtatatggctgcatatgattggaggcttgcctttcagaacaccgaggtgcgagaccagaccctaagtcggataaaaagcaatatagaactgatggttgcaaccagtggcaagaaggcagtaattgttccacattccatgggggttgtatactttttgcattttatgaagtgggtggaggcaccagctcctgtgggtggtggtggtggacccgattggtgcgccaagcacattaaagctgtgatgaatattggtgggccattgctaggtgttccaaaatctatagctggccttttctcagctgaagcacgggatattgctgttgccagggctctggctccaggtgttctggacacggatatgttccatcttcaaacattagagcacataatgaagatgtcacgaacctgggatgcaaccatgtcaatgataccaagaggaggggacacgatctggggcggtcttgaatggtcacccgaggaaggctattctccttgcagaagtaagtccagagacgatgctgctcagaattcaggacatcacgagaatcaaactacagattctaaagcaaaatattacagttatggaaggatgatgtcctttggaaaggatgcagcagaagctcatccatcagatcttaagaggattgacttcagggatgctgttaagggcggtaatgttgcaaataacacctgtgatgtgtggaacgagtaccaagacatgggtgttagtggcactaaagcagtggaagagtacaaggtttatacagctggagagattgtggatttgctcaactttgttgccccgaaaatgatggcccgtggtaatgctcacttttcatatgggatagctgatgatttggatgatcctaagtattcacactacaaatattggtcaaatccattggagacaaagttaccaaatgctcctgacatggagatctattcactgtatggagttggcattgaaactgaaagagcatatgtttacaagcggatacctacagcaggatgcaatattccattccagattgatacttcagctgatgataatgatgaaggtagctgcttgaaatctggtgtttacacggtagatggtgatgagactgtgcctgcattaagcgcaggattcatgtgtgcaaaaggatggcgaggaaaaactagatttaatccctctggtatcaaaacttatataagggagtattttcatgctccccctgcaaaccttcttgagggtcgtggtacacagagtggtgcacatgttgatataatgggaaatttcgctttgatagaggatgtaatgagagttgctgctggtggaacaagtaaaaacttgggaggtgatcaagtttactcagatatcttcaagtggtctgagaagatcaatttacgtttgtgattatctgtcgaaactcaccagtttcattgtgtcaacataccagcttgacatgttatttatgaacttacataccctttccactggatgccattcaaatattcagaaatgaacaggtatttttccagatatagtgcaggatttattacttccggtggtgtaaattgtaacattaacgcagctcatctcgctatgcaacaacaaagaataataggtgtgtagtagggattgagtttgatgttgtaccattaaagcttataattagcagtgtaagtgaaagctgtcgtactacaggtgttcatcctctacattttatttgtccatttcgactttttatttgtccctttttgcttatttttgacaaataaaaaaaagattgatattttttttaccttttaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="82650" stop="48296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82350" g_stop="81813" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80446" g_stop="80224" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="761" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80104" g_stop="79824" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="1042" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79264" g_stop="78937" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1370" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77143" g_stop="76887" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1371" r_stop="1627" r_length="257" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76240" g_stop="75363" g_length="878"/>
          <reference_exon_boundary r_type="cDNA" r_start="1628" r_stop="2505" r_length="878" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75362" i_stop="75231" i_length="132">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75230" g_stop="75224" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="2506" r_stop="2512" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75223" i_stop="74122" i_length="1102">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74121" g_stop="74107" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="2513" r_stop="2527" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U320342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82350" e_stop="81813"/>
          <exon e_start="80446" e_stop="80224"/>
          <exon e_start="80104" e_stop="79824"/>
          <exon e_start="79264" e_stop="78937"/>
          <exon e_start="77143" e_stop="76887"/>
          <exon e_start="76240" e_stop="75363"/>
          <exon e_start="75230" e_stop="75224"/>
          <exon e_start="74121" e_stop="74107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAGGTAATGCCTCTGTCTGTTACTGTTCTGGGTAATTGGTTTTGCAAAGATTTTGGTTCTTAAATACTGTTTTGATTGCAATAAGCATGATTTATCTTAGTTTCAGCTGGATATTTGCACTGATCTTATCTCTTGAGATAGCTTTTTCAGCTAAATATTGCTGAATAATGAAGCTATTTGACACTGGAAACCTTCTTCTAATTTTATGCTGTTCTATTGCTTGCAATTTCAAGTCTGTCAAAGTTACAACTTACAAACTAATACAGTGTCTTTAAGTTGATTTAATTTAGAATATCTTCCTTCTGGCGTTAGTTCATATAGTAATTATCCATGATGATTAATACAAAGCTCAATATAGGATATACTTCTTGCATCAGTTAATTCTACTAAAGCAATTCTATAGTCATGATAAAAGATCTAGCTTTACAACTTAAATGGTTTAGTAGATGGGATTATAGACCCTTAATCATATTACACTGCTGTTTCCAGATTGACCAAGAAACAAACTAAAGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCATTTTCTTTCACTTCTTAAATTTTATGTATGGTCTTTTGCAGACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAGGTACTGATGTCTCCTATGTGGTGTCGTCTGTGTTTGTATTTGGTCAAATCACGTTAAAAGCTGTTCCAATTAAATCATTTTTAAATGTTATAATTGTGATGCTCAATTTTCCTCAATAGGTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAGGTAAACTTAACTCTCTGAAAATCTTTCTTCTTTGCAGCTTGTTAAAAGGAAGGGTGCAAATTATGTGGATCGAAATCCTTTTATTTGGTTGCTGAAACTAATTTGTGGCCCATGGAGTAACTTCCTTAACATGCCATGAAATTATCCCTTCTTTTATGGCTTTCAAGCTGTGTTCTGAAACCTTTGAGCATCTCCAAAATGTTAACCAGATTCCTGAAAGGTTTCTATGAATATCCTTTCAACCATTGAACTATTAAAAAGTATTGTACAACATTGTTGTTCGTGTCAGCACAATTCATTTTAGAGTACGCAATAAAAGGAAAAACAAACTGTTCTAGTGCCTTAAAAACCCAACAACCAGGCAACACCAAACAAACATATTACTCCATAATGTCTTCGCTCAGTAATCAGCACTCATCTTCTTCATCCTCCTTTGGTTATCATTCAGTCCAGCCCAACATCCTCATAGTCCTTTCTCAGAGCAGCATGGTCTTTAAGTTTGTCTAGTATGTAATGTATTTTTTCTTCTTCTTTCTTTAGTAATTCACCTGAATTTCAGGGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGGGTAATGTTAATCTGAAACCAAATTCTCTCATTGTTTCTCTTGTATACGCTACTTTCCTTTATGTGTTTCAACTTTGAGCATTGATTTTGTTAGTGGTGGGTGTAGGTGATTTCGGATTACCAGTTTAGGGACTTCTATGATCAGCAGACATGCTGTAGTCCAAGGGATTTAGTGAATAAACTGTGTTCATCTCAACCCAGTAGCTTTACCTTGGACCATGTATATGTGTTCAGAAATCATCCAGATAATAGATATCAGACCCAGTTAATATGGGATGTGACAGAATTCCAAATCTGAATCCATATAACTCAAATGTGCCTAAAGTAGCACAAATAAAACTATCTATAAAGTGGTTAGTACTCTAATGTGAAGTTCTTGTTCTGATTATGGTTCTTTTACTTATACTTTTATGCAATAGGCAAGCATGGGTATGACCTGTTGCCTCGCTAAAAACTGCTTCTTTTGGGGAATTGCCAAAGAATGATTTGGATACCTGGCTGGTCATAATAAAACCAGTGGGCTCACATGTCATGAGTTACACGATTCAGAGCCAATGTGTTGTGCTTGGTGTGATGTCAGTGTAAAATAATGGAAATAAATGAAGTCTAATCTTTATATTACAACTGGATGATGTCCTTGTATATCAATTGTTTTTGTACACATTCTTTGCAAGACATTCCCTTTTTTGTGATAATATTAGATGAGGACTTATCCACTAACAAAAGAAAGAAATAAGATAAAGTACTGCATGAGGCATTCCTTTAACACTTGCTATCTCAACGAAATATCTGTTCAGAATTTCCTTTAAAGGAAAATCTGCTGTCAATGTAAATGGGACGAGATGGTTACAATTAAGTTCATATTGGACTTCCTCTTGAAAAGTGTTCCTTTACTTGCATATAATATTCCAAACTTGTCACTTGTCTTCTTCTTTTTTCTTGAACGAGGAACTCCATTCATTTTGTCAGTTCATCTGAATTTATTATGCTCCAAAAAGACCACAAGAGTCAAAAATATTTCCACTGAGTAGAAGCAGAACTAGACAAGCAAAGCATCATAACTGCCAGGAAAAGCAATGAAAAATGGAACCATGTTCTCTCAAATATTTCAAATTTGAAGACCATATTGGTTATGCTATAAGGTGCTTCTTATAGAGCAAAGAAATATCTATTTCCTTCTCTTCTTGTAATTATTACTCATATTTAAGATCCCTACATCAGCAGCAGCACATGTTTAGTGTGCATCAATCAAGTAATCTGAAGAAGATCTGAAGAACCATTCTCATATGCATCTTTTGGACTTATGGATGGAAAGAAATAAGGCTTGCTTTGAAGGAAGAAAGATGCATGTTTCTAGAATTAAGAACTCTTGTTTGCTTAGTTGATATTTCTGGTGTTATATGAGTAGAGTAGACAGCCTGGATCAGTGCATGGATGTCCTTAGCTTGCTAGAAGGGATTACTCGATGTGGTGATGTTTTCTCATGCAGTTGGTTTTTGTACTTCCCTGTACCATCTTGTACTTTTTTAAAATAAAATTGACCTCATCAAGAAAATAAAAAGTTACCAGGAGATTTAACTAAATAACATTAAAGATGGGTGATCTGTGATGTCTCAGTGGCCTTCCATGATATGGGTGCCTTTTCTTCCTATTTATGCAAATATTGTCTGAAGAAGTTGTCTTAACTTCCTTATCAGATTTTTTTTTGTGCTCACAGGCTGTAATTTCCAAAATAAATTGTCTTATCCATTGCTTCCTGATGCCTCTAACTAACTAGCATTTATTTACATGCAGGATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAAGTGAGTCCTCTCATATTTTTGCTTTTGTGTCTTATAATGTAGTTCTAACTTATAAGACTACAGGTTTTTTAGACTATGTACAGATCTGCTAGTTTGGTAATAAAATGTTAGTTTTAATTGCCAAAAAAAATGTAGTTCTAACTTGAATCCTTTCAGATAAGACGAAAAGAAGTCTTTTAACTGTATAGGTTGAAGTTCAAGAACCAAAACGAAATTTGGTTTTACAGCCAAGAGCCTCGACTATCCTACTTCAAAACACACAAAATTTCAGTAGCAATTTCCAATCTGAAGAAAGAACCCGACACTTAAGGCAGTAAAGCTCTATCATTGCCTTCTTGTGTGGTAAAGAACATTAATAGCTTCCACTCGGGCAAGAAGTTCCCCCTTAGTACAGTTTTTTAAACAGGAAAAAGATAGGATCACAAGCCCTTTGAGATACTTTTGTTTTCTTGTGGCTCATGGAAATTACCTGATTGTTATTTAGATTCTCTTCTATTGAGTTCTCTTTCCTTTGTCCCCCCTTTGAATTTCTCAGAAGGTTTAGACAAACTTGAATGTCCATGACAAGGCTTTGCTATAATTTGCAGCAGCTTCTTTAGTTCAAACTAATCTTAGTTATTTTGTTTTGATCTGATTTTTTCTTCAGGTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTTATATCCTCAATTTATTTAGTGAGTTCATGTTTTTTTAAAAAGTAGAACCTCTTTAGATTTTTATCAATAACAAAATGATAAACTCAATAAAAATTAATAGGACTTTTGTTTCATGATTGATGTTTTGAAAAGAGAAAAAATGTGATGAAAATAGATTTTGAAAGGCTTTGATTCAAGCGGATAAAAAAAAGGACTTTAAACTTATATATGTGCAACTTGTAATACTCACACATTTATTCATACAAGGCAATAGATTAAAATATCTCTATCTTCTTTAATGATATGATTTAATTTTAATAAATTATAAAACAAAGATAGGTTTGTATAATTTAAACATAACAAATATTTTATATGCCTAACTTAACAACTTCATTAGCACACAAAAATTCTAAATTGTTCAAGTTCAAAAAAAAAAAAAAGTATTAATAGTTTGAGTATTTAAATAAATTTTATCAAAAAGATATTAAACATATGAGGGATAAACAATAATTAATTTTGTAATTAATTTATCTATATTTGGTTAAAATAAAATTATAAAATAACTTATCCTAAAATTAGTTAACCCAACTTATAATATTATTTTATCACATATTAAAAATAAAATAATAATACCAAAATAACTTATTCCAAACAATCAACAAGCGTTTAAAACTTTAAACGGTAACAAAATATCTCTTTAGAAGAGATTATGGAGTACGTATTTCGGGTCTTGGGTTGAGTCCGAGCCCATATTATAAAACGGGCCATTTAGTCTCTCTTTGGTCTAAGTTGGGCTATCCGGTACCGGTAGACCCGCAAAAACTATTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTCGTAAGTTTCTTCATCCGTATCTGATAGTATATTTGTTGGATCATCTGTTTTGGATCGGCAAAATTGATGAAGTTTCTTATCTTCTGTATGAGCTAGACTTTTTATTTGATTTATTAATGTTTTTCGTTTTCTTGTACAAATTTATTGATTGTGCGGTTTTGTGGAAGATTTCTTATGGGTTGTTTTGTGTTTTCTTGTACAACTTCGTTGTTTGTGTTTGGTGCGCTACACTGATTATATGTTTAGTGTTTCTTGATTGTTCTTGCTGCTTATATGGGTTAATTCTACGTGATAACTGTAAGCTATATCTATTGTAAATTACAGGAAAAAGAAACCCCG</genome_strand>
        <mrna_strand>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG.......................................................................................................................GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAAGGGCGGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTT....................................................................................................................................AAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346755" ref_strand="+" ref_description="SGN-U346755        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agattcaatttccttagcggaaactagcttctaattagcctcaattttttccgaacgtaatggacggttatactcaagaacaattacttagatattctacctgtctcaattcgcaagcggacaatccgttttaatctgttttggtttacatgatcctttgcttaattgaaaaagtttctcatacgaactattgctccactatattgtgaattttgagcatcatatgacacatctgtcaaaaagaggaaatgaagaacatcaggttactccttttcaacaaagaagcccactaatttccattttttcccctcatatacattctagtcaaacaaggccacaaaatgaggcagagcaagtgcaatgaataaatttcacctctgggagggatatactgctgaaattgttgtaaacaatcatctgtctttgggatagaacaactgtggcattgaatacactgaaattgttcggtcaaagaaactactagtaatatctagctataaggtttgaaaaatattaatagggaatccaccataattaattttgcccattgaattttgcccttcaggaactgtaagcctcacggctcacagtgtaatacatctttcagttaggcagtgcgactttctgatttagtaagagacttctgtttaggaatgaaaggatctcatatttactttctttcttggattttttcacttcaaagtcatggttcttaacctaaaaacttttcctttaaaaaacaaaaacaaatagaaacatcttacctctagctcacccgtaagactaaatctctgtcgtcatgctagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="81605" stop="80187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81305" g_stop="80487" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U346755" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81305" e_stop="80487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCAT</genome_strand>
        <mrna_strand>AGATT-CAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTAATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCAATGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGGATTTTTT-CACTTCAAAGTCATGGTTCTTAACCTAAAAACTTTTCCTTTAAAAAAC-AAAAAC--AAATAG-AAACATCTT-ACCTCTAGCTCA-CCCGTAAG-ACTAAATCTCTGTCGTCA-TGCTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325825" ref_strand="+" ref_description="SGN-U325825        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G13980.1 | Symbol: None | expressed protein | chr3:4619045-4620269 REVERSE | Aliases: MDC16.10 (evalue: 7e-08, score=54.7) genbank/nr: gi|15231759|ref|NP_188014.1| expressed protein [Arabidopsis thaliana] gi|11994369|dbj|BAB02328.1| gb|AAD25600.1~gene_id:MDC16.10~similar to unknown protein [Arabidopsis thaliana](evalue: 5e-06, score=54.7)">
      <seq>tcttcttcaggcgtgtcatccaaattacagtctctaattatgctctgttttctctctccctaaaaccatcatcagttatccataactctttgtctccattgtctcttcttcacattcctattattattattactattgtgtgtatgtgtatgatgatcaattcctcattgacatcactattatgccgcagcttttgactcatctataacagacaataaagagattccttcaatcatttttcaccccactccttcacttcccctgtttttcttcctgttgctctgtttttttttcttcttctataaaaatactcagatatggataggtatagttatcaacgggagagggaaatttctcattcttcaaacccatctttctcttctacacttcttgacgcaatttaccgttcaattgatcaaggagaagaagaagaagagattgttctttacaaagaaacaatgcgtaagaaacagagcaacaatatggagagttttcaaaaagcttgtatgattgagaaatggatggaacataaagcaagtgaaaaagttgttgttcgaagaaaatctatagctgatttcgaaaggaatctgatgaactcgagctcgagttcttcagattcgagctgtgggggtgtgttttcttcttcagaaactgaatccagttacaataatgtagttataaattctgctgggtcatcttcttcttgttatggtctaaacaggcctaaaccaatcagaacctcaatttccggttcaaaccctgaaaaacacagcaaaaatcaagctaaacagctcaacaactatggcgatttccgccataatcatcctcctatggaaagagatttcgctcccaaaaccaaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="91543" stop="93006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91843" g_stop="92706" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U325825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91843" e_stop="92706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</genome_strand>
        <mrna_strand>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331002" ref_strand="+" ref_description="SGN-U331002        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G54200.1 | Symbol: None | expressed protein | chr1:20239379-20240732 FORWARD | Aliases: F20D21.2, F20D21_2 (evalue: 5e-29, score=124) genbank/nr: gi|15221754|ref|NP_175822.1| expressed protein [Arabidopsis thaliana] gi|25372748|pir||C96583 hypothetical protein F20D21.2 [imported] - Arabidopsis thaliana gi|4585964|gb|AAD25600.1| hypothetical protein [Arabidopsis thaliana](evalue: 3e-27, score=124)">
      <seq>gtttcttgaactcactattcactgctggaaatacaaagaaacccaaagttgtttcttcgaattctgcaaatgcatcttctacatgttcttcagcttcttcattctccaggtcatgtttaagcaaaagcacacccaaatccagcagcaacggaaccaaacgttccgttagattttacccagtgagtatcatcgtagacgaagattgtcagccatgtggacataaaaatctgtacgaagaaaaaatacccaaaccagagtctctaaagaataatatcagaaacaccgttaacgaagagctcaaatttcattcaatggagaaaaatcgtcgagtagaagaagctactaaggagttgctgagaaattatcagagaaattcaaattcccaaatcaagaaaatggaaattttcgacgatgaagatgatgacgacgatgatggtgcaagttgtgctagttcagatttattcgaacttgataatctttctgcaattggaatagatagtaataggtatctcgaagaattacccgtttacgaaactactcatctcgatactaatcgagccattgctagtggtttgattttgtaataaaagtgtattatttattgttaactaatgtaatttttgtaattggtttgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="+" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="92503" stop="93737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92803" g_stop="93436" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="661"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="+" ref_id="SGN-U331002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92803" e_stop="93436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</genome_strand>
        <mrna_strand>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324674" ref_strand="+" ref_description="SGN-U324674        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | developmentally regulated GTP-binding protein (DRG1), identical to developmentally regulated GTP binding protein (DRG1) (Arabidopsis thaliana) GI:2345150 | chr1:6002917-6006398 FORWARD | Aliases: F28G4.4(evalue: 6e-36, score=147) genbank/nr: putative(evalue: 8e-38, score=159)">
      <seq>agacttcacagatccagtggtgctttctgccgatagaggtggctgtacggtagaagatttctgtaatcacatacatcggagtcttgttaaggatgtgaagtatgtgttggtttggggtactagtgcaaggcactccccccagcattgtgggcttgctcaaatgcttgaggatgaagatgtggtgcagattgttaagaaaaaggagaaggaagatggaggaggcagaggccgattcaaatcacattctaatgctccttctcgtatatctgaccgtgaaaagaaggctccattgaagacttgattgagccagatagtggcgctgctagttctatatgccgatttggaaggatgcatgtgccaggtattactattgaagaatgagctatacaatgagaatagctagaggtttttcaactttatgaagtgaaacctatttatcagtagtggctcgaagatttcagtgttgtattctatatttgatcatgttacaccctagtaagtacaatatctggggacatgcttttttactccagataatatttactgcttttcatttgtgaaatgtgagataaaaagttttggtcttggatcctgaaagtgtcaatgcattaataattggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0142A05-E0eAp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0142A05.1" temp_strand="-" temp_description="C00HBa0142A05.1  CU928192.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0142A05 sequenced_by:sanger upload_account_name:uk">
        <position start="110347" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110047" g_stop="110017" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109800" g_stop="109630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="202" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109267" g_stop="108846" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="621" r_length="419" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="633"/>
      <MATCH_line gen_id="C00HBa0142A05.1" gen_strand="-" ref_id="SGN-U324674" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0142A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110047" e_stop="110017"/>
          <exon e_start="109800" e_stop="109630"/>
          <exon e_start="109267" e_stop="108846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTTTTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTTTCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCATTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTTGTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTTCTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTTCTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGTCACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCTAAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGAGAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGAT</genome_strand>
        <mrna_strand>AGACTTCACAGATCCAGTGGTGCTTTCTGCC........................................................................................................................................................................................................................GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGGCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAGATGGAGGAGGCAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACTTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCCGATTTGGAAGGATGCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGGTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTAC-ACCCT--AGTAAGTACAATATCTGGGGACATGCTTTTTTACTCCAGATAATATTTACTGCTTTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCATTAATAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5295" PGL_stop="8980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5295" e_stop="5551"/>
            <exon e_start="6657" e_stop="7176"/>
            <exon e_start="8953" e_stop="8980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5295" e_stop="5551" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5552" i_stop="6656" i_length="1105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6657" e_stop="7176" e_length="520"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="7177" i_stop="8952" i_length="1776"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8953" e_stop="8980" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5295" stop="5551"/>
              <exon start="6657" stop="7176"/>
              <exon start="8953" stop="8980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTCTTTGCATGCCCATTGCATTTTTGATTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGGAGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTTCCGACACTTTATCAACAAAAATCCATGGCTAAACAG : GTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAAAATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTATACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAAGTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTATGACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTAACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAG : GCATCAATAGAAGTGATCTGGTTGTCCT</gDNA_template>
            <first_frame> M  L  L  C  M  P  I  A  F  L  I  G  I  H  V  F  D  H  *  F  L  I  Y  Q  L  K  S  R  T  R  T  R  I  R  *  R  K  K  W  R  *  R  R  R  C  V  Q  Q  R  K  *  L  M  R  C  W  N  V  W  W  S  R  C  *  G  V  V  L  A  N  Q  R  K  F  R  H  F  I  N  K  N  P  W  L  N  R :   W  V  L  L  C  F  S  T  T  T  T  T  G  S  N  I  K  I  R  K  *  S  F  L  I  L  H  H  F  A  N  *  L  *  F  *  N  Q  L  *  *  H  I  *  N  *  C  I  D  Q  Y  T  Q  T  W  T  I  W  K  A  N  F  H  S  L  R  R  K  L  *  G  H  V  I  Y  L  Q  R  W  M  M  Q  K  L  F  R  Y  H  R  N  G  L  L  P  K  L  L  Y  S  *  L  I  Q  G  G  R  I  A  C  S  C  I  V  L  *  P  A  Q  F  G  P  L  L  R  N  I  L  M  S  L  Q  V  I  F  L  I  Q  S  A  *  A  K  R  K  K  L  T  C  F  Q  P  V  F  S  M  L  M  D  H  R  S  K  I  L  R  F  P  L  P  Q  K  Q  Q  :  A  S  I  E  V  I  W  L  S  </first_frame>
            <second_frame>  C  F  F  A  C  P  L  H  F  *  L  E  F  T  F  S  I  I  D  F  *  S  I  N  *  N  L  E  L  E  L  E  S  D  D  G  K  N  G  G  D  G  E  D  V  C  N  R  G  S  S  *  C  V  A  G  M  Y  G  G  A  V  V  R  A  *  F  L  Q  I  K  G  S  S  D  T  L  S  T  K  I  H  G  *  T   : G  G  C  C  C  V  S  L  Q  L  L  L  Q  E  A  T  S  R  S  E  N  R  V  S  *  F  C  I  I  L  P  I  S  C  S  S  E  T  N  F  D  D  I  Y  E  I  N  A  S  I  S  I  H  R  R  G  Q  F  G  K  P  T  F  T  H  *  E  G  N  Y  E  G  M  *  Y  I  F  N  A  G  *  C  R  S  C  S  A  I  T  E  M  A  Y  F  Q  S  C  C  I  L  N  *  F  K  E  G  E  L  L  A  H  A  *  F  Y  D  L  R  S  L  V  H  Y  *  E  T  S  *  C  L  F  K  L  S  F  *  F  K  V  H  K  Q  K  E  K  S  *  H  V  F  N  Q  S  S  V  C  *  W  I  I  A  P  R  S  C  A  F  R  C  H  R  S  N  R :   H  Q  *  K  *  S  G  C  P </second_frame>
            <third_frame>   A  S  L  H  A  H  C  I  F  D  W  N  S  R  F  R  S  L  I  F  D  L  S  T  K  I  *  N  *  N  *  N  Q  M  T  E  K  M  E  V  T  E  K  M  C  A  T  E  E  V  V  D  A  L  L  E  C  M  V  E  P  L  L  G  R  S  S  C  K  S  K  E  V  P  T  L  Y  Q  Q  K  S  M  A  K  Q  :  V  G  A  V  V  F  L  Y  N  Y  Y  Y  R  K  Q  H  Q  D  Q  K  I  E  F  L  N  F  A  S  F  C  Q  L  A  V  V  L  K  P  T  L  M  T  Y  M  K  L  M  H  R  S  V  Y  T  D  V  D  N  L  E  S  Q  L  S  L  T  E  K  E  I  M  R  A  C  D  I  S  S  T  L  D  D  A  E  V  V  P  L  S  Q  K  W  P  T  S  K  V  A  V  F  L  I  D  S  R  R  E  N  C  L  L  M  H  S  S  M  T  C  A  V  W  S  I  I  E  K  H  L  D  V  S  S  S  Y  L  F  D  S  K  C  I  S  K  K  K  K  A  N  M  F  S  T  S  L  Q  Y  A  D  G  S  S  L  Q  D  L  A  L  S  A  A  T  E  A  T   : G  I  N  R  S  D  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5390" stop="5551"/>
                    <exon start="6657" stop="7176"/>
                    <exon start="8953" stop="8978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMTEKMEVTEKMCATEEVVDALLECMVEPLLGRSSCKSKEVPTLYQQKSMAKQVGAVVFLYNYYYRKQHQDQKIEFLNFASFCQLAVVLKPTLMTYMKLMHRSVYTDVDNLESQLSLTEKEIMRACDISSTLDDAEVVPLSQKWPTSKVAVFLIDSRRENCLLMHSSMTCAVWSIIEKHLDVSSSYLFDSKCISKKKKANMFSTSLQYADGSSLQDLALSAATEATGINRSDLVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15558" PGL_stop="19948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15558" e_stop="15606"/>
            <exon e_start="16419" e_stop="16573"/>
            <exon e_start="18591" e_stop="18657"/>
            <exon e_start="19550" e_stop="19948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.521" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15606" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="15607" i_stop="16418" i_length="812"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16419" e_stop="16573" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.864">
            <gDNA_intron_boundary i_start="16574" i_stop="18590" i_length="2017"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18591" e_stop="18657" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.521">
            <gDNA_intron_boundary i_start="18658" i_stop="19549" i_length="892"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="19550" e_stop="19948" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15558" stop="15606"/>
              <exon start="16419" stop="16573"/>
              <exon start="18591" stop="18657"/>
              <exon start="19550" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACGAGATTGCTTTGTGTAATAAAACTATTCAGGCAGAATTAAACG : GGGGTGAAAATGAAGCTCTTAAAGATGTCTGTAATGACATGTGTAAAGAAGATGAAGACAGTGCCAATCAACTGGTAGAAGACTCATGTACTATTCAATATAGCAAGGGAAAAAGATTGTCCGAGGCTATTCTTACTTTGCAAAACCAATGTCAG : CAACTGGATCAATTCTGCTGCAGGAATAATTGGGTATTGCCAACATATCAAGTCTTTCCACTTGAGG : GTGGATTTCTTGCCAAGGTCATTGTAAGAGCTGCTGATTCCAAAGTTGTCAGTAGAAGCAAGATCTGTGAGAGTCCGCGCGAAGCAAGGGAATCCGCTGCTGCGCACGTGATTTCAAGCTTTCAAAAGTGAGAGTCCGCGTGAAGCAAGGGAGTCTGCTGCTGCAAACATGAATGCAACGAGTAGCTCCGTGGTAGTTCAGAATCCATAGCTTTGCAAAGGGGCTATTACTGCTCTTTGCAAGTTGTACCAAAGATCGAATCTGTCTTGCCATTTTCCCCTGTAAACTCAACTCAAAACATGTACTCATAAGTTAAACTGTGTAAGAATGTGTAAACTTATAGATTCTAGTTATGAAGAAATACCAACTGTTGTCGACTCTTCGATAATGCTCAGCACC</gDNA_template>
            <first_frame> E  D  E  I  A  L  C  N  K  T  I  Q  A  E  L  N   : G  G  E  N  E  A  L  K  D  V  C  N  D  M  C  K  E  D  E  D  S  A  N  Q  L  V  E  D  S  C  T  I  Q  Y  S  K  G  K  R  L  S  E  A  I  L  T  L  Q  N  Q  C  Q  :  Q  L  D  Q  F  C  C  R  N  N  W  V  L  P  T  Y  Q  V  F  P  L  E   : G  G  F  L  A  K  V  I  V  R  A  A  D  S  K  V  V  S  R  S  K  I  C  E  S  P  R  E  A  R  E  S  A  A  A  H  V  I  S  S  F  Q  K  *  E  S  A  *  S  K  G  V  C  C  C  K  H  E  C  N  E  *  L  R  G  S  S  E  S  I  A  L  Q  R  G  Y  Y  C  S  L  Q  V  V  P  K  I  E  S  V  L  P  F  S  P  V  N  S  T  Q  N  M  Y  S  *  V  K  L  C  K  N  V  *  T  Y  R  F  *  L  *  R  N  T  N  C  C  R  L  F  D  N  A  Q  H  </first_frame>
            <second_frame>  K  T  R  L  L  C  V  I  K  L  F  R  Q  N  *  T  :  G  V  K  M  K  L  L  K  M  S  V  M  T  C  V  K  K  M  K  T  V  P  I  N  W  *  K  T  H  V  L  F  N  I  A  R  E  K  D  C  P  R  L  F  L  L  C  K  T  N  V  S :   N  W  I  N  S  A  A  G  I  I  G  Y  C  Q  H  I  K  S  F  H  L  R  :  V  D  F  L  P  R  S  L  *  E  L  L  I  P  K  L  S  V  E  A  R  S  V  R  V  R  A  K  Q  G  N  P  L  L  R  T  *  F  Q  A  F  K  S  E  S  P  R  E  A  R  E  S  A  A  A  N  M  N  A  T  S  S  S  V  V  V  Q  N  P  *  L  C  K  G  A  I  T  A  L  C  K  L  Y  Q  R  S  N  L  S  C  H  F  P  L  *  T  Q  L  K  T  C  T  H  K  L  N  C  V  R  M  C  K  L  I  D  S  S  Y  E  E  I  P  T  V  V  D  S  S  I  M  L  S  T </second_frame>
            <third_frame>   R  R  D  C  F  V  *  *  N  Y  S  G  R  I  K  R :   G  *  K  *  S  S  *  R  C  L  *  *  H  V  *  R  R  *  R  Q  C  Q  S  T  G  R  R  L  M  Y  Y  S  I  *  Q  G  K  K  I  V  R  G  Y  S  Y  F  A  K  P  M  S   : A  T  G  S  I  L  L  Q  E  *  L  G  I  A  N  I  S  S  L  S  T  *  G :   W  I  S  C  Q  G  H  C  K  S  C  *  F  Q  S  C  Q  *  K  Q  D  L  *  E  S  A  R  S  K  G  I  R  C  C  A  R  D  F  K  L  S  K  V  R  V  R  V  K  Q  G  S  L  L  L  Q  T  *  M  Q  R  V  A  P  W  *  F  R  I  H  S  F  A  K  G  L  L  L  L  F  A  S  C  T  K  D  R  I  C  L  A  I  F  P  C  K  L  N  S  K  H  V  L  I  S  *  T  V  *  E  C  V  N  L  *  I  L  V  M  K  K  Y  Q  L  L  S  T  L  R  *  C  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15558" stop="15606"/>
                    <exon start="16419" stop="16573"/>
                    <exon start="18591" stop="18657"/>
                    <exon start="19550" stop="19680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDEIALCNKTIQAELNGGENEALKDVCNDMCKEDEDSANQLVEDSCTIQYSKGKRLSEAILTLQNQCQQLDQFCCRNNWVLPTYQVFPLEGGFLAKVIVRAADSKVVSRSKICESPREARESAAAHVISSFQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21202" PGL_stop="20564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21202" e_stop="20564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21202" e_stop="20564" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21202" stop="20564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTCACTTCATATCACCACAACCTTGGTTGACACCTTCTCTGGCTGTGACAGTTCCCCGCAAACTATTCCTACACAATATCACTGTCCCATTCTTTGTACTGCTCATTCGATCTCTCTCATGTAAAGGTCCTTGCAGTGTTCAAAGGGATACAAGAGACTGAAGTGGTCCTTGGATTGGAGTATTACCCTCTCAGATTCTGTTATGAAAATGCTATGAGAGGCCATGTATACACACCATGTAGCATAGAAGATGTTTAGCAGACTTGACACAATGAGATATTCGGGAGAAGAAACAAGCCTTTAGTACTTACCACTTAGAGCAGATTATGCGTATGCAACATACGTTGTGTGTTATGTCATCTGTTCTTAGATTTTGAATTTGATTGATATTGGACTAAAGAAAGTATAGTTTTTCTTTCAGTGGTTTTACATAAGCATTCCTGTTTTTGTTTTCTTTAGAGTTGATTGTGAAATCGGAGCAGAAAGCCATCAACTTCACTTTAATTTGATTTAGTGGTCTATGTCTTCGCATGGTGGAAGTTCCTGCTCGAATTTAAGTTCAAATCAGAGATGTTAATAACTTCCTCTGTTGGGCTATGTGTCAAATATTTTTCATTTGATTTTTATCTTTACTAG</gDNA_template>
            <first_frame> Q  V  T  S  Y  H  H  N  L  G  *  H  L  L  W  L  *  Q  F  P  A  N  Y  S  Y  T  I  S  L  S  H  S  L  Y  C  S  F  D  L  S  H  V  K  V  L  A  V  F  K  G  I  Q  E  T  E  V  V  L  G  L  E  Y  Y  P  L  R  F  C  Y  E  N  A  M  R  G  H  V  Y  T  P  C  S  I  E  D  V  *  Q  T  *  H  N  E  I  F  G  R  R  N  K  P  L  V  L  T  T  *  S  R  L  C  V  C  N  I  R  C  V  L  C  H  L  F  L  D  F  E  F  D  *  Y  W  T  K  E  S  I  V  F  L  S  V  V  L  H  K  H  S  C  F  C  F  L  *  S  *  L  *  N  R  S  R  K  P  S  T  S  L  *  F  D  L  V  V  Y  V  F  A  W  W  K  F  L  L  E  F  K  F  K  S  E  M  L  I  T  S  S  V  G  L  C  V  K  Y  F  S  F  D  F  Y  L  Y  * </first_frame>
            <second_frame>  K  S  L  H  I  T  T  T  L  V  D  T  F  S  G  C  D  S  S  P  Q  T  I  P  T  Q  Y  H  C  P  I  L  C  T  A  H  S  I  S  L  M  *  R  S  L  Q  C  S  K  G  Y  K  R  L  K  W  S  L  D  W  S  I  T  L  S  D  S  V  M  K  M  L  *  E  A  M  Y  T  H  H  V  A  *  K  M  F  S  R  L  D  T  M  R  Y  S  G  E  E  T  S  L  *  Y  L  P  L  R  A  D  Y  A  Y  A  T  Y  V  V  C  Y  V  I  C  S  *  I  L  N  L  I  D  I  G  L  K  K  V  *  F  F  F  Q  W  F  Y  I  S  I  P  V  F  V  F  F  R  V  D  C  E  I  G  A  E  S  H  Q  L  H  F  N  L  I  *  W  S  M  S  S  H  G  G  S  S  C  S  N  L  S  S  N  Q  R  C  *  *  L  P  L  L  G  Y  V  S  N  I  F  H  L  I  F  I  F  T   </second_frame>
            <third_frame>   S  H  F  I  S  P  Q  P  W  L  T  P  S  L  A  V  T  V  P  R  K  L  F  L  H  N  I  T  V  P  F  F  V  L  L  I  R  S  L  S  C  K  G  P  C  S  V  Q  R  D  T  R  D  *  S  G  P  W  I  G  V  L  P  S  Q  I  L  L  *  K  C  Y  E  R  P  C  I  H  T  M  *  H  R  R  C  L  A  D  L  T  Q  *  D  I  R  E  K  K  Q  A  F  S  T  Y  H  L  E  Q  I  M  R  M  Q  H  T  L  C  V  M  S  S  V  L  R  F  *  I  *  L  I  L  D  *  R  K  Y  S  F  S  F  S  G  F  T  *  A  F  L  F  L  F  S  L  E  L  I  V  K  S  E  Q  K  A  I  N  F  T  L  I  *  F  S  G  L  C  L  R  M  V  E  V  P  A  R  I  *  V  Q  I  R  D  V  N  N  F  L  C  W  A  M  C  Q  I  F  F  I  *  F  L  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21151" stop="20942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPANYSYTISLSHSLYCSFDLSHVKVLAVFKGIQETEVVLGLEYYPLRFCYENAMRGHVYTPCSIEDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25360" PGL_stop="28499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25360" e_stop="25440"/>
            <exon e_start="25696" e_stop="25785"/>
            <exon e_start="25861" e_stop="25965"/>
            <exon e_start="26992" e_stop="27321"/>
            <exon e_start="27426" e_stop="27476"/>
            <exon e_start="27793" e_stop="27855"/>
            <exon e_start="27942" e_stop="28066"/>
            <exon e_start="28463" e_stop="28499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.803" e_score="0.990"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.726" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25360" e_stop="25440" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.864">
            <gDNA_intron_boundary i_start="25441" i_stop="25695" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25696" e_stop="25785" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.949">
            <gDNA_intron_boundary i_start="25786" i_stop="25860" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="25861" e_stop="25965" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.803">
            <gDNA_intron_boundary i_start="25966" i_stop="26991" i_length="1026"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="26992" e_stop="27321" e_length="330"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27322" i_stop="27425" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27426" e_stop="27476" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.856">
            <gDNA_intron_boundary i_start="27477" i_stop="27792" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27793" e_stop="27855" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.617">
            <gDNA_intron_boundary i_start="27856" i_stop="27941" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27942" e_stop="28066" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.726">
            <gDNA_intron_boundary i_start="28067" i_stop="28462" i_length="396"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28463" e_stop="28499" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25360" stop="25440"/>
              <exon start="25696" stop="25785"/>
              <exon start="25861" stop="25965"/>
              <exon start="26992" stop="27321"/>
              <exon start="27426" stop="27476"/>
              <exon start="27793" stop="27855"/>
              <exon start="27942" stop="28066"/>
              <exon start="28463" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGCCAGAGTGTAAACCACCATTACAGCAGAAGGTCTCAACAGTACTGGGATAAGTTCTACAAGCTCCACAAAAACAAG : TTTTTCAAGGACCGACACTACTTAGAGAAGGATTGGGGAAGATATTTTGATGATGAAATTGAATCTTCCAATGGGAAGGTTGTTCTAGAG : GTGGGCTGTGGAGCGGGTAATACGATTTTTCCTCTCATAGCTACGTTTCCGAAGCTCTATGTTCACGCCTGTGATTTCTCAGCTAAAGCAGTAACCCTCGTTAAG : TCGCATGCAAATTACAGTTCAGAAAAGATTAATGTCTTTGTCTGTGATGCTGCAATGGATGATCTCTGTGCTAATGTCATGCCTTTTACCGTTGATGTTGTAACCTTGGTAAGTGAAGGGAGTAAGTAATGATAATCATATCTGAATATGTATTAAGTGATTAAAGCATAGTGTTCACCTAAAAGCAATTTAATAAACCGTATATCCTTCCTTCGGGAAAAATGTATGCCTACATGAGCATCTAACTCCTTTAAGTAGATATTTACATTGTCTGCAGTTTCACCATGCAAGATGGCTTCAATTCTGGAGAACTGTAAGCAAGTACTAAAG : CCAAATGGTCACATTCTTTTACGAGATTATGCAGTTGGTGATTCTGCTCAG : GTGAAACTGCATGACAGAAACCAGATGATTAGTGAGAACTTTTACTTCCGAGGAGATGGAACT : TGTTCGTTTTACTTTTCCGAGACTTACGCGTCAACCTTGTTTCAAAGTGCTGGTTTTGCAATTGTGGATATTAACACGTACTGCAAGGAAATTACGAACCATTCTCAGAATATTACCATGCAGAG : GCGCTGGATACGTGGCATATTTGGTCGTTCATGATTA</gDNA_template>
            <first_frame> Y  S  Q  S  V  N  H  H  Y  S  R  R  S  Q  Q  Y  W  D  K  F  Y  K  L  H  K  N  K  :  F  F  K  D  R  H  Y  L  E  K  D  W  G  R  Y  F  D  D  E  I  E  S  S  N  G  K  V  V  L  E  :  V  G  C  G  A  G  N  T  I  F  P  L  I  A  T  F  P  K  L  Y  V  H  A  C  D  F  S  A  K  A  V  T  L  V  K  :  S  H  A  N  Y  S  S  E  K  I  N  V  F  V  C  D  A  A  M  D  D  L  C  A  N  V  M  P  F  T  V  D  V  V  T  L  V  S  E  G  S  K  *  *  *  S  Y  L  N  M  Y  *  V  I  K  A  *  C  S  P  K  S  N  L  I  N  R  I  S  F  L  R  E  K  C  M  P  T  *  A  S  N  S  F  K  *  I  F  T  L  S  A  V  S  P  C  K  M  A  S  I  L  E  N  C  K  Q  V  L  K  :  P  N  G  H  I  L  L  R  D  Y  A  V  G  D  S  A  Q  :  V  K  L  H  D  R  N  Q  M  I  S  E  N  F  Y  F  R  G  D  G  T  :  C  S  F  Y  F  S  E  T  Y  A  S  T  L  F  Q  S  A  G  F  A  I  V  D  I  N  T  Y  C  K  E  I  T  N  H  S  Q  N  I  T  M  Q  R :   R  W  I  R  G  I  F  G  R  S  *  L </first_frame>
            <second_frame>  T  A  R  V  *  T  T  I  T  A  E  G  L  N  S  T  G  I  S  S  T  S  S  T  K  T  S :   F  S  R  T  D  T  T  *  R  R  I  G  E  D  I  L  M  M  K  L  N  L  P  M  G  R  L  F  *  R :   W  A  V  E  R  V  I  R  F  F  L  S  *  L  R  F  R  S  S  M  F  T  P  V  I  S  Q  L  K  Q  *  P  S  L  S :   R  M  Q  I  T  V  Q  K  R  L  M  S  L  S  V  M  L  Q  W  M  I  S  V  L  M  S  C  L  L  P  L  M  L  *  P  W  *  V  K  G  V  S  N  D  N  H  I  *  I  C  I  K  *  L  K  H  S  V  H  L  K  A  I  *  *  T  V  Y  P  S  F  G  K  N  V  C  L  H  E  H  L  T  P  L  S  R  Y  L  H  C  L  Q  F  H  H  A  R  W  L  Q  F  W  R  T  V  S  K  Y  *  S :   Q  M  V  T  F  F  Y  E  I  M  Q  L  V  I  L  L  R :   *  N  C  M  T  E  T  R  *  L  V  R  T  F  T  S  E  E  M  E  L :   V  R  F  T  F  P  R  L  T  R  Q  P  C  F  K  V  L  V  L  Q  L  W  I  L  T  R  T  A  R  K  L  R  T  I  L  R  I  L  P  C  R   : G  A  G  Y  V  A  Y  L  V  V  H  D   </second_frame>
            <third_frame>   Q  P  E  C  K  P  P  L  Q  Q  K  V  S  T  V  L  G  *  V  L  Q  A  P  Q  K  Q   : V  F  Q  G  P  T  L  L  R  E  G  L  G  K  I  F  *  *  *  N  *  I  F  Q  W  E  G  C  S  R   : G  G  L  W  S  G  *  Y  D  F  S  S  H  S  Y  V  S  E  A  L  C  S  R  L  *  F  L  S  *  S  S  N  P  R  *   : V  A  C  K  L  Q  F  R  K  D  *  C  L  C  L  *  C  C  N  G  *  S  L  C  *  C  H  A  F  Y  R  *  C  C  N  L  G  K  *  R  E  *  V  M  I  I  I  S  E  Y  V  L  S  D  *  S  I  V  F  T  *  K  Q  F  N  K  P  Y  I  L  P  S  G  K  M  Y  A  Y  M  S  I  *  L  L  *  V  D  I  Y  I  V  C  S  F  T  M  Q  D  G  F  N  S  G  E  L  *  A  S  T  K   : A  K  W  S  H  S  F  T  R  L  C  S  W  *  F  C  S   : G  E  T  A  *  Q  K  P  D  D  *  *  E  L  L  L  P  R  R  W  N   : L  F  V  L  L  F  R  D  L  R  V  N  L  V  S  K  C  W  F  C  N  C  G  Y  *  H  V  L  Q  G  N  Y  E  P  F  S  E  Y  Y  H  A  E  :  A  L  D  T  W  H  I  W  S  F  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25360" stop="25440"/>
                    <exon start="25696" stop="25785"/>
                    <exon start="25861" stop="25965"/>
                    <exon start="26992" stop="27120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSQSVNHHYSRRSQQYWDKFYKLHKNKFFKDRHYLEKDWGRYFDDEIESSNGKVVLEVGCGAGNTIFPLIATFPKLYVHACDFSAKAVTLVKSHANYSSEKINVFVCDAAMDDLCANVMPFTVDVVTLVSEGSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27250" stop="27321"/>
                    <exon start="27426" stop="27476"/>
                    <exon start="27793" stop="27855"/>
                    <exon start="27942" stop="28066"/>
                    <exon start="28463" stop="28496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFTLSAVSPCKMASILENCKQVLKPNGHILLRDYAVGDSAQVKLHDRNQMISENFYFRGDGTCSFYFSETYASTLFQSAGFAIVDINTYCKEITNHSQNITMQRRWIRGIFGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31909" PGL_stop="37173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31924" e_stop="31984"/>
            <exon e_start="32817" e_stop="33735"/>
            <exon e_start="34032" e_stop="34388"/>
            <exon e_start="34536" e_stop="34641"/>
            <exon e_start="36579" e_stop="37173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.530" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.653" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31924" e_stop="31984" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.530" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31985" i_stop="32816" i_length="832"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32817" e_stop="33735" e_length="919"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33736" i_stop="34031" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="34032" e_stop="34388" e_length="357"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34389" i_stop="34535" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34536" e_stop="34641" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.653" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34642" i_stop="36578" i_length="1937"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36579" e_stop="37173" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31924" stop="31984"/>
              <exon start="32817" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
              <exon start="36579" stop="37173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33260" stop="33735"/>
              <exon start="34032" stop="34388"/>
              <exon start="34536" stop="34641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTG : CTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAG : GTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAA : CCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTG : GTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTA</gDNA_template>
            <first_frame> K  I  K  S  C  K  G  A  V  A  A  R  C  F  G  K  R  V  F  V   : A  W  N  N  L  L  L  V  V  L  H  G  L  T  R  L  T  Q  L  H  I  V  F  T  R  K  N  *  W  K  R  C  L  Q  L  L  L  L  H  S  A  *  A  A  L  S  V  I  T  L  Q  F  R  T  M  *  K  S  Q  G  S  N  *  *  L  T  Q  L  A  Y  F  Q  I  L  H  L  C  C  M  L  S  Q  I  P  V  G  M  E  K  A  T  V  *  K  L  M  L  V  E  F  P  C  *  P  *  E  K  A  L  E  N  V  V  C  R  R  L  Y  W  E  L  K  M  A  *  L  L  A  I  A  S  F  R  E  V  M  K  M  R  F  Y  L  L  E  R  I  H  V  E  L  M  A  R  S  C  C  H  W  A  L  A  C  S  *  A  C  Q  L  L  L  K  L  R  V  L  T  M  D  K  *  L  P  R  S  *  V  W  K  K  G  V  *  I  E  R  L  V  I  P  *  L  L  F  Q  M  M  K  L  L  V  A  L  H  L  R  H  L  *  W  P  F  H  C  P  V  R  R  S  L  S  K  K  V  S  R  V  C  L  N  W  N  V  C  H  S  G  V  L  Y  L  S  V  E  R  D  R  R  W  R  M  L  L  W  L  F  L  I  S  *  K  F  L  S  R  C  L  L  V  I  V  *  L  M  D  *  V  K  V  *  V  T  *  H  L  I  S  M  E  Y  M  M  V  M  E  D  L  R :   L  R  I  I  A  V  N  V  F  I  *  H  *  L  R  N  *  N  F  P  N  M  I  W  W  M  E  V  *  G  I  P  G  R  C  S  G  R  R  F  L  L  I  A  F  S  R  L  M  M  K  L  E  E  R  S  *  I  S  V  M  T  T  L  M  P  L  A  A  P  L  S  L  *  L  Q  K  L  L  G  P  P  Q  L  *  R  *  F  V  H  L  I  L  *  L  L  T  V  G  I  Q  E  Q  S  F  I  V  A  K  K  Q  W  H  C  Q  S  I  T  N :   Q  A  E  K  M  S  M  P  E  L  K  H  L  V  V  R  S  F  S  G  M  D  I  V  Y  L  A  F  L  Q  C  Q  D  L  L  :  V  T  D  I  *  N  H  G  *  Y  L  N  Q  K  L  C  L  Y  H  V  L  E  K  M  N  A  *  F  *  P  V  T  V  C  G  M  *  *  R  M  K  K  L  V  K  W  L  D  G  E  F  C  C  G  T  K  R  T  G  L  T  L  C  L  K  G  A  R  E  W  I  L  L  H  K  Q  Q  R  S  I  F  H  R  W  L  F  R  K  A  A  K  T  I  Y  P  *  L  W  W  T  L  K  L  T  G  S  S  K  A  K  V  R  D  D  M  F  T  T  F  G  L  V  *  I  C  T  R  R  R  V  *  I  S  L  L  H  N  S  V  H  *  F  F  L  W  A  *  G  V  C  M  R  I  V  F  *  Q  C  I  I  E  E  K  T  V  D  K  R  R  L  S  K  F  F  G  V  C  C  A  R  K  W  L  C  K  L  S  M  L  *  Q  I  S  E  M  Q  F  L  </first_frame>
            <second_frame>  K  *  N  L  V  K  G  L  *  L  Q  G  V  L  V  K  G  F  L  L  :  L  G  T  I  C  C  W  *  C  C  T  D  *  R  G  *  L  N  C  I  L  F  S  L  E  R  I  N  G  R  D  V  S  S  C  C  C  Y  T  Q  L  K  Q  L  Y  L  *  *  P  C  N  F  E  P  C  R  N  H  K  A  Q  I  S  D  *  H  S  *  L  T  F  R  S  Y  I  F  V  A  C  *  V  K  Y  Q  L  G  W  K  K  Q  R  Y  E  S  *  C  W  *  S  S  L  V  D  P  R  R  K  L  W  K  M  *  S  A  A  D  C  I  G  S  *  K  W  P  D  C  *  R  *  H  H  S  G  K  *  *  R  *  D  F  I  C  W  R  G  S  M  W  N  *  W  R  G  V  V  A  T  G  R  *  L  A  V  E  L  A  N  C  C  *  N  *  G  Y  *  Q  W  T  N  S  C  Q  G  H  K  F  G  R  K  E  F  R  *  K  G  *  *  Y  H  S  C  S  S  R  *  *  N  Y  *  W  P  Y  T  *  G  I  C  S  G  P  S  I  A  Q  *  E  G  A  C  Q  R  K  C  Q  E  C  V  *  I  G  M  C  A  T  L  G  F  C  I  Y  L  W  K  E  T  G  D  G  G  C  S  C  G  C  S  *  F  H  E  N  S  Y  Q  D  V  Y  W  *  S  C  N  *  W  T  K  S  K  F  E  S  P  D  I  S  F  L  W  S  I  *  W  S  W  R  I  S   : G  C  G  L  L  P  *  T  C  S  S  S  I  S  *  G  I  K  T  S  Q  T  *  F  G  G  W  K  C  K  G  Y  P  A  G  A  V  G  E  G  F  Y  *  L  L  S  Q  G  *  *  *  S  W  R  K  G  H  R  S  L  *  *  Q  H  *  C  L  *  L  H  L  *  A  Y  S  S  R  N  C  W  V  H  R  S  C  S  G  D  L  F  I  S  Y  Y  S  C  *  L  W  G  F  K  S  S  P  L  S  W  Q  R  S  S  G  I  V  N  R  S  Q   : T  K  Q  R  R  *  V  C  Q  N  *  S  I  W  W  *  G  H  S  V  E  W  T  S  C  I  W  R  S  C  N  V  K  I  Y  W :   *  Q  I  F  E  T  M  D  N  T  *  T  R  S  Y  V  C  T  T  C  *  R  R  *  M  P  S  F  S  Q  *  R  F  V  G  C  D  D  E  *  R  S  L  *  N  G  *  T  A  N  S  A  V  A  Q  K  E  R  D  *  P  S  A  *  K  G  P  G  S  G  S  C  C  T  S  S  S  G  V  S  F  I  D  G  S  S  E  R  Q  Q  R  Q  Y  I  R  D  C  G  G  P  *  S  S  Q  E  V  Q  K  Q  K  L  E  M  T  C  S  L  H  L  V  *  Y  K  S  V  H  G  D  G  Y  K  S  H  Y  Y  I  T  Q  S  I  N  F  S  Y  G  L  K  V  C  V  *  E  *  Y  F  S  N  V  L  *  K  K  K  Q  L  T  N  D  V  Y  P  N  F  L  V  F  V  A  P  E  N  G  Y  V  N  *  A  C  C  S  K  Y  Q  K  C  N  F  L </second_frame>
            <third_frame>   N  K  I  L  *  R  G  C  S  C  K  V  F  W  *  K  G  F  C  C :   L  E  Q  F  V  A  G  S  A  A  R  T  N  A  V  D  S  I  A  Y  C  F  H  *  K  E  L  M  E  E  M  S  P  A  V  A  V  T  L  S  L  S  S  S  I  C  D  N  P  A  I  S  N  H  V  E  I  T  R  L  K  L  V  T  D  T  A  S  L  L  S  D  P  T  S  L  L  H  A  E  S  N  T  S  W  D  G  K  S  N  G  M  K  V  D  V  G  R  V  P  L  L  T  L  G  E  S  S  G  K  C  S  L  P  Q  T  V  L  G  A  E  N  G  L  I  V  S  D  S  I  I  Q  G  S  D  E  D  E  I  L  S  V  G  E  D  P  C  G  I  N  G  E  E  L  L  P  L  G  A  S  L  Q  L  S  L  P  I  A  V  E  I  E  G  I  D  N  G  Q  I  V  A  K  V  I  S  L  E  E  R  S  L  D  R  K  V  S  N  T  I  V  A  L  P  D  D  E  I  T  S  G  P  T  L  K  A  S  V  V  A  L  P  L  P  S  E  K  E  P  V  K  E  S  V  K  S  V  F  E  L  E  C  V  P  L  W  G  S  V  S  I  C  G  K  R  P  E  M  E  D  A  L  V  V  V  P  N  F  M  K  I  P  I  K  M  F  I  G  D  R  V  I  D  G  L  S  Q  S  L  S  H  L  T  S  H  F  Y  G  V  Y  D  G  H  G  G  S  Q  :  V  A  D  Y  C  R  K  R  V  H  L  A  L  V  E  E  L  K  L  P  K  H  D  L  V  D  G  S  V  R  D  T  R  Q  V  Q  W  E  K  V  F  T  N  C  F  L  K  V  D  D  E  V  G  G  K  V  I  D  L  C  D  D  N  I  N  A  S  S  C  T  S  E  P  I  A  P  E  T  V  G  S  T  A  V  V  A  V  I  C  S  S  H  I  I  V  A  N  C  G  D  S  R  A  V  L  Y  R  G  K  E  A  V  A  L  S  I  D  H  K  :  P  S  R  E  D  E  Y  A  R  I  E  A  S  G  G  K  V  I  Q  W  N  G  H  R  V  F  G  V  L  A  M  S  R  S  I   : G  D  R  Y  L  K  P  W  I  I  P  E  P  E  V  M  F  V  P  R  A  R  E  D  E  C  L  V  L  A  S  D  G  L  W  D  V  M  T  N  E  E  A  C  E  M  A  R  R  R  I  L  L  W  H  K  K  N  G  T  N  P  L  P  E  R  G  Q  G  V  D  L  A  A  Q  A  A  A  E  Y  L  S  S  M  A  L  Q  K  G  S  K  D  N  I  S  V  I  V  V  D  L  K  A  H  R  K  F  K  S  K  S  *  R  *  H  V  H  Y  I  W  F  S  I  N  L  Y  T  A  T  G  I  N  L  I  I  T  *  L  S  P  L  I  F  P  M  G  L  R  C  V  Y  E  N  S  I  L  A  M  Y  Y  R  R  K  N  S  *  Q  T  T  F  I  Q  I  F  W  C  L  L  R  Q  K  M  A  M  *  I  E  H  V  V  A  N  I  R  N  A  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32890" stop="33735"/>
                    <exon start="34032" stop="34388"/>
                    <exon start="34536" stop="34641"/>
                    <exon start="36579" stop="36913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELMEEMSPAVAVTLSLSSSICDNPAISNHVEITRLKLVTDTASLLSDPTSLLHAESNTSWDGKSNGMKVDVGRVPLLTLGESSGKCSLPQTVLGAENGLIVSDSIIQGSDEDEILSVGEDPCGINGEELLPLGASLQLSLPIAVEIEGIDNGQIVAKVISLEERSLDRKVSNTIVALPDDEITSGPTLKASVVALPLPSEKEPVKESVKSVFELECVPLWGSVSICGKRPEMEDALVVVPNFMKIPIKMFIGDRVIDGLSQSLSHLTSHFYGVYDGHGGSQVADYCRKRVHLALVEELKLPKHDLVDGSVRDTRQVQWEKVFTNCFLKVDDEVGGKVIDLCDDNINASSCTSEPIAPETVGSTAVVAVICSSHIIVANCGDSRAVLYRGKEAVALSIDHKPSREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAREDECLVLASDGLWDVMTNEEACEMARRRILLWHKKNGTNPLPERGQGVDLAAQAAAEYLSSMALQKGSKDNISVIVVDLKAHRKFKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31909" e_stop="32758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="31909" e_stop="32758" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31909" stop="32758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGC</gDNA_template>
            <first_frame> H  K  E  K  K  K  I  K  S  C  K  G  A  V  A  A  R  C  F  G  K  R  V  F  V  G  K  L  T  F  V  T  V  L  V  E  F  I  V  S  R  T  F  F  F  F  F  M  L  L  N  G  L  L  L  K  D  S  I  F  I  C  W  V  G  G  R  R  R  V  Y  L  V  N  D  L  Y  F  E  R  W  T  *  V  A  S  D  P  *  N  P  S  Y  M  W  Q  K  G  C  I  F  L  G  F  F  H  V  I  L  D  *  L  S  V  F  F  P  L  L  G  S  F  P  *  F  F  H  F  H  F  F  N  S  W  I  R  V  *  F  C  R  F  P  H  F  L  V  Y  L  R  V  G  G  G  G  A  K  I  C  S  S  *  S  C  F  F  S  *  R  E  R  Y  N  C  M  I  F  *  F  Q  V  Q  E  R  S  P  Q  L  F  S  V  *  D  V  P  S  T  D  L  F  I  A  T  D  L  L  H  T  L  V  S  L  T  Y  L  E  L  V  P  P  F  L  *  C  W  *  C  T  L  Y  F  *  *  *  A  V  D  *  D  L  L  A  S  F  N  F  Y  L  S  P  F  L  W  I  P  T  S  F  S  L  C  L  *  F  S  C  L  A  H  F  C  G  F  L  A  H  F  I  V  D  S  I  *  </first_frame>
            <second_frame>  T  K  K  K  R  K  *  N  L  V  K  G  L  *  L  Q  G  V  L  V  K  G  F  L  L  V  S  L  L  L  L  L  F  *  L  N  L  L  *  V  G  P  F  F  F  F  L  C  C  *  M  V  C  C  L  K  I  Q  F  L  S  V  G  L  E  E  E  E  E  Y  I  *  *  M  T  C  I  L  R  G  G  H  E  L  P  Q  I  H  E  T  Q  V  T  C  G  K  K  V  V  S  F  *  G  F  F  M  *  F  L  I  S  C  L  F  S  S  H  Y  *  V  L  F  H  D  S  F  T  F  T  S  S  I  H  G  *  G  F  D  F  V  V  F  P  I  F  L  C  I  *  G  L  V  V  V  E  L  R  F  A  L  L  S  P  V  S  S  L  E  E  R  D  I  I  A  *  F  F  S  S  R  Y  K  K  G  P  P  N  C  S  Q  S  R  T  C  H  L  Q  I  C  L  *  Q  Q  I  S  F  T  L  L  L  V  S  L  I  W  S  L  F  H  L  F  Y  D  V  G  S  V  P  F  T  S  S  S  E  L  L  T  E  I  Y  L  P  H  S  I  F  I  S  P  H  F  C  G  F  L  P  R  S  P  C  A  Y  N  L  A  V  L  H  I  F  V  D  S  *  L  I  S  L  W  I  Q  F  S </second_frame>
            <third_frame>   Q  R  K  K  E  N  K  I  L  *  R  G  C  S  C  K  V  F  W  *  K  G  F  C  W  *  A  Y  F  C  Y  C  F  S  *  I  Y  C  K  *  D  L  F  F  F  F  Y  V  V  E  W  F  V  A  *  R  F  N  F  Y  L  L  G  W  R  K  K  K  S  I  F  S  K  *  P  V  F  *  E  V  D  M  S  C  L  R  S  M  K  P  K  L  H  V  A  K  R  L  Y  L  F  R  V  F  S  C  D  S  *  L  V  V  C  F  L  P  I  T  R  F  F  S  M  I  L  S  L  S  L  L  Q  F  M  D  K  G  L  I  L  S  F  S  P  F  S  C  V  F  K  G  W  W  W  W  S  *  D  L  L  F  L  V  L  F  L  L  L  K  R  E  I  *  L  H  D  F  L  V  P  G  T  R  K  V  P  P  T  V  L  S  L  G  R  A  I  Y  R  S  V  Y  S  N  R  S  P  S  H  S  C  *  S  H  L  S  G  A  C  S  T  F  S  M  M  L  V  V  Y  P  L  L  L  V  V  S  C  *  L  R  S  T  C  L  I  Q  F  L  S  L  P  I  F  V  D  S  Y  L  V  L  P  V  L  I  I  *  L  S  C  T  F  L  W  I  P  S  S  F  H  C  G  F  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31909" stop="32157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKEKKKIKSCKGAVAARCFGKRVFVGKLTFVTVLVEFIVSRTFFFFFMLLNGLLLKDSIFICWVGGRRRVYLVNDLYFERWT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32513" stop="32731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQISFTLLLVSLIWSLFHLFYDVGSVPFTSSSELLTEIYLPHSIFISPHFCGFLPRSPCAYNLAVLHIFVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39673" PGL_stop="40147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39673" e_stop="40147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39673" e_stop="40147" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39673" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGCCAAACCCAAGTCTTTAAACAAGCAAAATTACAAAGTGTCCAAAAGAGCTCCTTTTAGCCTAAATCAATGGCAGATGATGGGGAAGATATGACCCCATTTTGGCTACAAAACACCACCAATCTCCGCCGTACTGAGAGGCTACGCCACCGGGTGTCGTCTCTCTTCTTTAACGCAGGACTGTTGCTCATTATTCTGTTGTTGGTGACGGCGATCTTCTTTGCAGTTTTTGTAGTTCCTTCAACACTATCTATGTTTAAACCAACCAATGTAAAGAAAAGCTGGGATTCTGTTAATGTAGTGTTGGTTCTAGTTGCTGTGATTTTTGGTTTTCTCAGCAGAAACAACAATGAAGATAAAAATCTCAATCAATATCAACGAACAGCTTCTCCGATTAACAGAAATCAAGTTCAGAAATCGAATCCATCAACACCAAATAGTAGATGGTTTAGTGAAGTTCGAAATCCGAA</gDNA_template>
            <first_frame> K  S  A  K  P  K  S  L  N  K  Q  N  Y  K  V  S  K  R  A  P  F  S  L  N  Q  W  Q  M  M  G  K  I  *  P  H  F  G  Y  K  T  P  P  I  S  A  V  L  R  G  Y  A  T  G  C  R  L  S  S  L  T  Q  D  C  C  S  L  F  C  C  W  *  R  R  S  S  L  Q  F  L  *  F  L  Q  H  Y  L  C  L  N  Q  P  M  *  R  K  A  G  I  L  L  M  *  C  W  F  *  L  L  *  F  L  V  F  S  A  E  T  T  M  K  I  K  I  S  I  N  I  N  E  Q  L  L  R  L  T  E  I  K  F  R  N  R  I  H  Q  H  Q  I  V  D  G  L  V  K  F  E  I  R  </first_frame>
            <second_frame>  K  V  P  N  P  S  L  *  T  S  K  I  T  K  C  P  K  E  L  L  L  A  *  I  N  G  R  *  W  G  R  Y  D  P  I  L  A  T  K  H  H  Q  S  P  P  Y  *  E  A  T  P  P  G  V  V  S  L  L  *  R  R  T  V  A  H  Y  S  V  V  G  D  G  D  L  L  C  S  F  C  S  S  F  N  T  I  Y  V  *  T  N  Q  C  K  E  K  L  G  F  C  *  C  S  V  G  S  S  C  C  D  F  W  F  S  Q  Q  K  Q  Q  *  R  *  K  S  Q  S  I  S  T  N  S  F  S  D  *  Q  K  S  S  S  E  I  E  S  I  N  T  K  *  *  M  V  *  *  S  S  K  S  E </second_frame>
            <third_frame>   K  C  Q  T  Q  V  F  K  Q  A  K  L  Q  S  V  Q  K  S  S  F  *  P  K  S  M  A  D  D  G  E  D  M  T  P  F  W  L  Q  N  T  T  N  L  R  R  T  E  R  L  R  H  R  V  S  S  L  F  F  N  A  G  L  L  L  I  I  L  L  L  V  T  A  I  F  F  A  V  F  V  V  P  S  T  L  S  M  F  K  P  T  N  V  K  K  S  W  D  S  V  N  V  V  L  V  L  V  A  V  I  F  G  F  L  S  R  N  N  N  E  D  K  N  L  N  Q  Y  Q  R  T  A  S  P  I  N  R  N  Q  V  Q  K  S  N  P  S  T  P  N  S  R  W  F  S  E  V  R  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39738" stop="40145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSMADDGEDMTPFWLQNTTNLRRTERLRHRVSSLFFNAGLLLIILLLVTAIFFAVFVVPSTLSMFKPTNVKKSWDSVNVVLVLVAVIFGFLSRNNNEDKNLNQYQRTASPINRNQVQKSNPSTPNSRWFSEVRNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41753" PGL_stop="40570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41753" e_stop="40570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="41753" e_stop="40570" e_length="1184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="40570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTATTCAAAATCACACTTCTTTCATAACTTAGGCTAGTCAAGTACTACATGACCAACTTATCAACTGCAACAAAGAAACACAAAATTAACAAATGTTCAATCCATAGCGGAAGCTTAAGTGACCTATGATAGTTTTTTTTTTTTTAAACAATCTCTCTATTTTCTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAACAAATCAATCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTTTCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTCTGAAGAATGGGGGTGGTGGAGGTGGTGGTGGAATTGGTATCAACGGCGATTCTCCTCCGCTGTTTGGGTTTTCTTCGACACTGTCGAAGCTTCTTATTTTCACTGGCTTTGGTGCTGGAGTTCTGGTGAAAGGGGTATTTGGTCTTGATATCCTGACCGGTACTGCCTTGACTGGCGGAGGAGGTGGTGGCGGTGGTGGAGGTGCATTTCTCTTTCTTCTGGCCTTTTTGGATGTGAATAAGTTTTGAAACAGAGAAGAAGGTGGTGGCGGTGGCGGAGGAGGTGGTGGTGGTGGAGTGGAGGATGCCGGCCGTTGGTAATGGAGAGGAGGTGGTTCTGATTTGTAGAGAAGAGCATCAAAATTATCAACACTTTTTGATCTGTTCTTTCTCTTCTTTTTGTGATATAAAGAGTTTATAAACTCCTTCGTCGCACTTGCACCACCTCTTTTCCGATCACTTTTGCTGCTCCTCGGCTCCACATATTGTGGTAATGGAGGCGGCGGTGGCGGAGGTGGTGGTGGAGGAGGAAGCGTCGCCGGTGCCATAATAATTTTAGTTGCTTCTCGCTCATGATTTTCCCTCTTTTTACTTGCTCTCTCCTTCTTAC</gDNA_template>
            <first_frame> I  D  Y  S  K  S  H  F  F  H  N  L  G  *  S  S  T  T  *  P  T  Y  Q  L  Q  Q  R  N  T  K  L  T  N  V  Q  S  I  A  E  A  *  V  T  Y  D  S  F  F  F  F  K  Q  S  L  Y  F  L  Y  T  N  N  N  S  N  L  K  *  *  T  K  K  M  T  T  L  T  N  Q  S  M  W  *  E  K  N  L  T  V  A  Y  S  W  A  E  I  *  *  A  S  S  *  I  I  F  V  E  G  I  D  F  F  *  L  *  S  S  S  K  F  *  Y  E  V  F  S  F  C  V  Y  I  W  A  W  T  K  Q  W  *  R  S  K  R  H  P  F  T  S  A  G  V  F  C  H  R  G  V  F  G  *  I  Y  I  F  K  F  R  R  P  R  T  *  A  E  G  A  V  Y  S  Q  V  V  A  L  Y  Y  E  F  P  G  V  F  S  E  E  W  G  W  W  R  W  W  W  N  W  Y  Q  R  R  F  S  S  A  V  W  V  F  F  D  T  V  E  A  S  Y  F  H  W  L  W  C  W  S  S  G  E  R  G  I  W  S  *  Y  P  D  R  Y  C  L  D  W  R  R  R  W  W  R  W  W  R  C  I  S  L  S  S  G  L  F  G  C  E  *  V  L  K  Q  R  R  R  W  W  R  W  R  R  R  W  W  W  W  S  G  G  C  R  P  L  V  M  E  R  R  W  F  *  F  V  E  K  S  I  K  I  I  N  T  F  *  S  V  L  S  L  L  F  V  I  *  R  V  Y  K  L  L  R  R  T  C  T  T  S  F  P  I  T  F  A  A  P  R  L  H  I  L  W  *  W  R  R  R  W  R  R  W  W  W  R  R  K  R  R  R  C  H  N  N  F  S  C  F  S  L  M  I  F  P  L  F  T  C  S  L  L  L   </first_frame>
            <second_frame>  S  I  I  Q  N  H  T  S  F  I  T  *  A  S  Q  V  L  H  D  Q  L  I  N  C  N  K  E  T  Q  N  *  Q  M  F  N  P  *  R  K  L  K  *  P  M  I  V  F  F  F  L  N  N  L  S  I  F  C  T  L  I  I  T  Q  I  S  N  D  E  Q  K  K  *  Q  L  *  Q  I  N  Q  C  G  K  K  R  I  *  L  W  P  T  P  G  P  R  F  D  K  L  R  P  R  S  F  L  L  K  E  L  I  F  S  S  F  N  P  A  L  N  F  D  M  K  F  S  A  F  V  F  T  S  G  L  G  Q  N  N  G  D  G  A  N  A  I  P  S  P  A  P  A  S  S  A  I  G  V  F  S  A  E  S  I  S  S  S  S  G  D  P  E  R  E  L  R  V  L  S  I  L  K  *  S  P  C  T  T  N  F  Q  A  C  F  L  K  N  G  G  G  G  G  G  G  G  I  G  I  N  G  D  S  P  P  L  F  G  F  S  S  T  L  S  K  L  L  I  F  T  G  F  G  A  G  V  L  V  K  G  V  F  G  L  D  I  L  T  G  T  A  L  T  G  G  G  G  G  G  G  G  G  G  A  F  L  F  L  L  A  F  L  D  V  N  K  F  *  N  R  E  E  G  G  G  G  G  G  G  G  G  G  G  G  V  E  D  A  G  R  W  *  W  R  G  G  G  S  D  L  *  R  R  A  S  K  L  S  T  L  F  D  L  F  F  L  F  F  L  *  Y  K  E  F  I  N  S  F  V  A  L  A  P  P  L  F  R  S  L  L  L  L  L  G  S  T  Y  C  G  N  G  G  G  G  G  G  G  G  G  G  G  G  S  V  A  G  A  I  I  I  L  V  A  S  R  S  *  F  S  L  F  L  L  A  L  S  F  L  </second_frame>
            <third_frame>   R  L  F  K  I  T  L  L  S  *  L  R  L  V  K  Y  Y  M  T  N  L  S  T  A  T  K  K  H  K  I  N  K  C  S  I  H  S  G  S  L  S  D  L  *  *  F  F  F  F  *  T  I  S  L  F  S  V  H  *  *  *  L  K  S  Q  M  M  N  K  K  N  D  N  F  N  K  S  I  N  V  V  R  K  E  S  N  C  G  L  L  L  G  R  D  L  I  S  F  V  L  D  H  F  C  *  R  N  *  F  F  L  A  L  I  Q  L  *  I  L  I  *  S  F  Q  L  L  C  L  H  L  G  L  D  K  T  M  V  T  E  Q  T  P  S  L  H  Q  R  R  R  L  L  P  S  G  C  F  R  L  N  L  Y  L  Q  V  Q  E  T  Q  N  V  S  *  G  C  C  L  F  S  S  S  R  L  V  L  R  I  S  R  R  V  F  *  R  M  G  V  V  E  V  V  V  E  L  V  S  T  A  I  L  L  R  C  L  G  F  L  R  H  C  R  S  F  L  F  S  L  A  L  V  L  E  F  W  *  K  G  Y  L  V  L  I  S  *  P  V  L  P  *  L  A  E  E  V  V  A  V  V  E  V  H  F  S  F  F  W  P  F  W  M  *  I  S  F  E  T  E  K  K  V  V  A  V  A  E  E  V  V  V  V  E  W  R  M  P  A  V  G  N  G  E  E  V  V  L  I  C  R  E  E  H  Q  N  Y  Q  H  F  L  I  C  S  F  S  S  F  C  D  I  K  S  L  *  T  P  S  S  H  L  H  H  L  F  S  D  H  F  C  C  S  S  A  P  H  I  V  V  M  E  A  A  V  A  E  V  V  V  E  E  E  A  S  P  V  P  *  *  F  *  L  L  L  A  H  D  F  P  S  F  Y  L  L  S  P  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41494" stop="41213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWPTPGPRFDKLRPRSFLLKELIFSSFNPALNFDMKFSAFVFTSGLGQNNGDGANAIPSPAPASSAIGVFSAESISSSSGDPERELRVLSILK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41212" stop="40931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPCTTNFQACFLKNGGGGGGGGIGINGDSPPLFGFSSTLSKLLIFTGFGAGVLVKGVFGLDILTGTALTGGGGGGGGGGAFLFLLAFLDVNKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41240" stop="41031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEGAVYSQVVALYYEFPGVFSEEWGWWRWWWNWYQRRFSSAVWVFFDTVEASYFHWLWCWSSGERGIWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47813" PGL_stop="45932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47813" e_stop="45932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="47813" e_stop="45932" e_length="1882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47813" stop="45932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTCTTCTCAGCTTCACAATCACACAACAATGGCGGCTTCTTGCATGCTTAGATCCTCTTTCCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAGGTATGTTCCTTTTAATGCTGGTCCTACTTCTGATGAATGGTATTCTCTAGATGAGATTGTTTATCGGAGTCGGTCTGGTGGATTACTTGATGTTCAGCATGATATGGATGCCTTAAAGAAGTTTGATGGTCAGTATTGGCGATCCTTGTTTGATTCTCGTGTCGGTAAGACCACTTGGCCTTATGGGTCCGGTGTTTGGTCTAAGAAGGAATGGGTTCTGCCTGAAATTGATAGTGATGATATTGTTAGTGCTTTTGAAGGGAACTCGAATCTGTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGACTGATTTGTGGGTCAAACACTGTGGGATTAGCCATACTGGTAGTTTTAAGGATCTTGGGATGACTGTTTTGGTGAGTCAAGTTAATCGGTTGCGCAAAATGCATAAACCGGTCGTCGGTGTGGGGTGTGCTTCTACTGGAGACACATCTGCGGCCCTGTCGGCTTACTGTGCATCTGCAGGCATTCCATCAATTGTATTTCTACCTGCGAATAAGATTTCTATGGCGCAACTGGTTCAACCTATTGCAAATGGGGCTTTTGTGTTGAGTATTGACACTGATTTTGATGGTTGTATGCAGTTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAACTGCAACGGGATAGTTGAGGAGGCCACCGAGGAGGAGTTGATGGATGCTATGGCTCAGGCAGACTCCACTGGGATGTTCATTTGCCCGCATACTGGTGTGGCATTGACTGCGCTGTTCAAGCTGAGAAACAGTGGAGTCATTGCACCAACTGATAGGACTGTGGTTGTGAGTACAGCTCATGGATTGAAGTTTACTCAATCCAAGATTGATTACCACTCAAAGGAAATAAAAGACATGGAATGTCGGTTTTCTAACCCACCTGTGGAAGTGAAAGCAGATTTTGGATCAGTTATGGATGTTCTGAAGAGCTATTTGTTGAGCCAAAATTCCAAGCTATGATGTGTTGTCAGTTTTAAACATAGTAAGTTTGTAATATGTACTCCTTTTGTCAGCATATGGTCATTTATCGCCATTAATTTGCCGTATAGAAATGACCAGATGGTGATTTTGTTGTTGGCAGAGTTGGGGAGAGAAAGGCTCTACATTACTTTTGAGAGTACTACGAACTCGAGTCCTTTTATGGAACTCTGTTTTTTGTAACAGTCTGCTTTTTGTAGCATTGCTTTGGTGCATCACAATGGAAACTGCCTTAATTTGACCTGTTTTGTTAAATTATATGACCTTAAAGAGA</gDNA_template>
            <first_frame> A  S  S  Q  L  H  N  H  T  T  M  A  A  S  C  M  L  R  S  S  F  L  S  P  G  L  P  Q  L  H  H  Q  S  T  S  K  P  N  N  G  I  H  F  F  A  P  I  K  A  T  A  T  N  D  A  I  S  Q  Q  K  H  R  R  P  A  D  E  N  I  R  E  E  A  R  R  H  C  S  S  H  N  F  S  A  R  Y  V  P  F  N  A  G  P  T  S  D  E  W  Y  S  L  D  E  I  V  Y  R  S  R  S  G  G  L  L  D  V  Q  H  D  M  D  A  L  K  K  F  D  G  Q  Y  W  R  S  L  F  D  S  R  V  G  K  T  T  W  P  Y  G  S  G  V  W  S  K  K  E  W  V  L  P  E  I  D  S  D  D  I  V  S  A  F  E  G  N  S  N  L  F  W  A  E  R  F  G  K  Q  F  L  G  M  T  D  L  W  V  K  H  C  G  I  S  H  T  G  S  F  K  D  L  G  M  T  V  L  V  S  Q  V  N  R  L  R  K  M  H  K  P  V  V  G  V  G  C  A  S  T  G  D  T  S  A  A  L  S  A  Y  C  A  S  A  G  I  P  S  I  V  F  L  P  A  N  K  I  S  M  A  Q  L  V  Q  P  I  A  N  G  A  F  V  L  S  I  D  T  D  F  D  G  C  M  Q  L  I  R  E  V  T  A  E  L  P  I  Y  L  A  N  S  L  N  S  L  R  L  E  G  Q  K  T  A  A  I  E  I  L  Q  Q  F  D  W  E  V  P  E  W  V  I  V  P  G  G  N  L  G  N  I  Y  A  F  Y  K  G  F  Q  M  C  K  E  L  G  L  V  D  R  I  P  R  L  V  C  A  Q  A  A  N  A  N  P  L  Y  L  H  Y  K  S  G  W  K  D  F  K  P  V  K  A  N  T  T  F  A  S  A  I  Q  I  G  D  P  V  S  I  D  R  A  V  F  A  L  Q  N  C  N  G  I  V  E  E  A  T  E  E  E  L  M  D  A  M  A  Q  A  D  S  T  G  M  F  I  C  P  H  T  G  V  A  L  T  A  L  F  K  L  R  N  S  G  V  I  A  P  T  D  R  T  V  V  V  S  T  A  H  G  L  K  F  T  Q  S  K  I  D  Y  H  S  K  E  I  K  D  M  E  C  R  F  S  N  P  P  V  E  V  K  A  D  F  G  S  V  M  D  V  L  K  S  Y  L  L  S  Q  N  S  K  L  *  C  V  V  S  F  K  H  S  K  F  V  I  C  T  P  F  V  S  I  W  S  F  I  A  I  N  L  P  Y  R  N  D  Q  M  V  I  L  L  L  A  E  L  G  R  E  R  L  Y  I  T  F  E  S  T  T  N  S  S  P  F  M  E  L  C  F  L  *  Q  S  A  F  C  S  I  A  L  V  H  H  N  G  N  C  L  N  L  T  C  F  V  K  L  Y  D  L  K  E  </first_frame>
            <second_frame>  R  L  L  S  F  T  I  T  Q  Q  W  R  L  L  A  C  L  D  P  L  S  S  L  L  V  F  L  N  F  I  I  N  Q  L  Q  N  P  I  M  V  F  I  S  S  L  R  L  K  L  Q  P  Q  T  M  R  F  L  N  R  S  T  D  V  L  L  T  R  T  S  V  K  K  R  A  V  T  A  H  L  I  I  F  Q  P  G  M  F  L  L  M  L  V  L  L  L  M  N  G  I  L  *  M  R  L  F  I  G  V  G  L  V  D  Y  L  M  F  S  M  I  W  M  P  *  R  S  L  M  V  S  I  G  D  P  C  L  I  L  V  S  V  R  P  L  G  L  M  G  P  V  F  G  L  R  R  N  G  F  C  L  K  L  I  V  M  I  L  L  V  L  L  K  G  T  R  I  C  F  G  L  S  V  L  A  N  S  F  *  A  *  L  I  C  G  S  N  T  V  G  L  A  I  L  V  V  L  R  I  L  G  *  L  F  W  *  V  K  L  I  G  C  A  K  C  I  N  R  S  S  V  W  G  V  L  L  L  E  T  H  L  R  P  C  R  L  T  V  H  L  Q  A  F  H  Q  L  Y  F  Y  L  R  I  R  F  L  W  R  N  W  F  N  L  L  Q  M  G  L  L  C  *  V  L  T  L  I  L  M  V  V  C  S  *  F  V  K  L  L  L  S  C  L  F  T  W  Q  I  R  *  I  V  *  G  W  K  G  K  R  R  Q  Q  S  R  F  Y  S  S  L  I  G  K  F  R  S  G  L  *  F  L  V  G  T  *  A  T  Y  M  H  F  I  K  V  F  R  C  A  K  S  W  D  L  W  I  A  S  L  G  L  F  V  L  K  L  P  T  L  I  R  S  T  C  I  T  N  L  V  G  K  T  S  N  L  *  R  R  T  Q  H  L  H  L  L  Y  R  L  V  T  Q  C  L  *  T  E  L  F  L  P  C  R  T  A  T  G  *  L  R  R  P  P  R  R  S  *  W  M  L  W  L  R  Q  T  P  L  G  C  S  F  A  R  I  L  V  W  H  *  L  R  C  S  S  *  E  T  V  E  S  L  H  Q  L  I  G  L  W  L  *  V  Q  L  M  D  *  S  L  L  N  P  R  L  I  T  T  Q  R  K  *  K  T  W  N  V  G  F  L  T  H  L  W  K  *  K  Q  I  L  D  Q  L  W  M  F  *  R  A  I  C  *  A  K  I  P  S  Y  D  V  L  S  V  L  N  I  V  S  L  *  Y  V  L  L  L  S  A  Y  G  H  L  S  P  L  I  C  R  I  E  M  T  R  W  *  F  C  C  W  Q  S  W  G  E  K  G  S  T  L  L  L  R  V  L  R  T  R  V  L  L  W  N  S  V  F  C  N  S  L  L  F  V  A  L  L  W  C  I  T  M  E  T  A  L  I  *  P  V  L  L  N  Y  M  T  L  K  R </second_frame>
            <third_frame>   V  F  S  A  S  Q  S  H  N  N  G  G  F  L  H  A  *  I  L  F  P  L  S  W  S  S  S  T  S  S  S  I  N  F  K  T  Q  *  W  Y  S  F  L  R  S  D  *  S  Y  S  H  K  R  C  D  F  S  T  E  A  P  T  S  C  *  R  E  H  P  *  R  S  A  P  S  L  L  I  S  *  F  F  S  Q  V  C  S  F  *  C  W  S  Y  F  *  *  M  V  F  S  R  *  D  C  L  S  E  S  V  W  W  I  T  *  C  S  A  *  Y  G  C  L  K  E  V  *  W  S  V  L  A  I  L  V  *  F  S  C  R  *  D  H  L  A  L  W  V  R  C  L  V  *  E  G  M  G  S  A  *  N  *  *  *  *  Y  C  *  C  F  *  R  E  L  E  S  V  L  G  *  A  F  W  Q  T  V  S  R  H  D  *  F  V  G  Q  T  L  W  D  *  P  Y  W  *  F  *  G  S  W  D  D  C  F  G  E  S  S  *  S  V  A  Q  N  A  *  T  G  R  R  C  G  V  C  F  Y  W  R  H  I  C  G  P  V  G  L  L  C  I  C  R  H  S  I  N  C  I  S  T  C  E  *  D  F  Y  G  A  T  G  S  T  Y  C  K  W  G  F  C  V  E  Y  *  H  *  F  *  W  L  Y  A  V  D  S  *  S  Y  C  *  V  A  Y  L  L  G  K  F  V  E  *  F  E  V  G  R  A  K  D  G  S  N  R  D  F  T  A  V  *  L  G  S  S  G  V  G  Y  S  S  W  W  E  L  R  Q  H  I  C  I  L  *  R  F  S  D  V  Q  R  V  G  T  C  G  S  H  P  *  A  C  L  C  S  S  C  Q  R  *  S  A  L  L  A  L  Q  I  W  L  E  R  L  Q  T  C  E  G  E  H  N  I  C  I  C  Y  T  D  W  *  P  S  V  Y  R  Q  S  C  F  C  P  A  E  L  Q  R  D  S  *  G  G  H  R  G  G  V  D  G  C  Y  G  S  G  R  L  H  W  D  V  H  L  P  A  Y  W  C  G  I  D  C  A  V  Q  A  E  K  Q  W  S  H  C  T  N  *  *  D  C  G  C  E  Y  S  S  W  I  E  V  Y  S  I  Q  D  *  L  P  L  K  G  N  K  R  H  G  M  S  V  F  *  P  T  C  G  S  E  S  R  F  W  I  S  Y  G  C  S  E  E  L  F  V  E  P  K  F  Q  A  M  M  C  C  Q  F  *  T  *  *  V  C  N  M  Y  S  F  C  Q  H  M  V  I  Y  R  H  *  F  A  V  *  K  *  P  D  G  D  F  V  V  G  R  V  G  E  R  K  A  L  H  Y  F  *  E  Y  Y  E  L  E  S  F  Y  G  T  L  F  F  V  T  V  C  F  L  *  H  C  F  G  A  S  Q  W  K  L  P  *  F  D  L  F  C  *  I  I  *  P  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47813" stop="46224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSQLHNHTTMAASCMLRSSFLSPGLPQLHHQSTSKPNNGIHFFAPIKATATNDAISQQKHRRPADENIREEARRHCSSHNFSARYVPFNAGPTSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFSNPPVEVKADFGSVMDVLKSYLLSQNSKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46223" stop="46023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVVSFKHSKFVICTPFVSIWSFIAINLPYRNDQMVILLLAELGRERLYITFESTTNSSPFMELCFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47751" e_stop="47560"/>
            <exon e_start="46946" e_stop="46563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47751" e_stop="47560" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="47559" i_stop="46947" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="46946" e_stop="46563" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47751" stop="47560"/>
              <exon start="46946" stop="46771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTCCTGGTCTTCCTCAACTTCATCATCAATCAACTTCAAAACCCAATAATGGTATTCATTTCTTCGCTCCGATTAAAGCTACAGCCACAAACGATGCGATTTCTCAACAGAAGCACCGACGTCCTGCTGACGAGAACATCCGTGAAGAAGCGCGCCGTCACTGCTCATCTCATAATTTTTCAGCCAG : TTGATTCGTGAAGTTACTGCTGAGTTGCCTATTTACTTGGCAAATTCGTTGAATAGTTTGAGGTTGGAAGGGCAAAAGACGGCAGCAATCGAGATTTTACAGCAGTTTGATTGGGAAGTTCCGGAGTGGGTTATAGTTCCTGGTGGGAACTTAGGCAACATATATGCATTTTATAAAGGTTTTCAGATGTGCAAAGAGTTGGGACTTGTGGATCGCATCCCTAGGCTTGTTTGTGCTCAAGCTGCCAACGCTAATCCGCTCTACTTGCATTACAAATCTGGTTGGAAAGACTTCAAACCTGTGAAGGCGAACACAACATTTGCATCTGCTATACAGATTGGTGACCCAGTGTCTATAGACAGAGCTGTTTTTGCCCTGCAGAAC</gDNA_template>
            <first_frame> P  L  S  W  S  S  S  T  S  S  S  I  N  F  K  T  Q  *  W  Y  S  F  L  R  S  D  *  S  Y  S  H  K  R  C  D  F  S  T  E  A  P  T  S  C  *  R  E  H  P  *  R  S  A  P  S  L  L  I  S  *  F  F  S  Q  :  L  I  R  E  V  T  A  E  L  P  I  Y  L  A  N  S  L  N  S  L  R  L  E  G  Q  K  T  A  A  I  E  I  L  Q  Q  F  D  W  E  V  P  E  W  V  I  V  P  G  G  N  L  G  N  I  Y  A  F  Y  K  G  F  Q  M  C  K  E  L  G  L  V  D  R  I  P  R  L  V  C  A  Q  A  A  N  A  N  P  L  Y  L  H  Y  K  S  G  W  K  D  F  K  P  V  K  A  N  T  T  F  A  S  A  I  Q  I  G  D  P  V  S  I  D  R  A  V  F  A  L  Q  N </first_frame>
            <second_frame>  L  S  P  G  L  P  Q  L  H  H  Q  S  T  S  K  P  N  N  G  I  H  F  F  A  P  I  K  A  T  A  T  N  D  A  I  S  Q  Q  K  H  R  R  P  A  D  E  N  I  R  E  E  A  R  R  H  C  S  S  H  N  F  S  A  S :   *  F  V  K  L  L  L  S  C  L  F  T  W  Q  I  R  *  I  V  *  G  W  K  G  K  R  R  Q  Q  S  R  F  Y  S  S  L  I  G  K  F  R  S  G  L  *  F  L  V  G  T  *  A  T  Y  M  H  F  I  K  V  F  R  C  A  K  S  W  D  L  W  I  A  S  L  G  L  F  V  L  K  L  P  T  L  I  R  S  T  C  I  T  N  L  V  G  K  T  S  N  L  *  R  R  T  Q  H  L  H  L  L  Y  R  L  V  T  Q  C  L  *  T  E  L  F  L  P  C  R   </second_frame>
            <third_frame>   S  L  L  V  F  L  N  F  I  I  N  Q  L  Q  N  P  I  M  V  F  I  S  S  L  R  L  K  L  Q  P  Q  T  M  R  F  L  N  R  S  T  D  V  L  L  T  R  T  S  V  K  K  R  A  V  T  A  H  L  I  I  F  Q  P   : V  D  S  *  S  Y  C  *  V  A  Y  L  L  G  K  F  V  E  *  F  E  V  G  R  A  K  D  G  S  N  R  D  F  T  A  V  *  L  G  S  S  G  V  G  Y  S  S  W  W  E  L  R  Q  H  I  C  I  L  *  R  F  S  D  V  Q  R  V  G  T  C  G  S  H  P  *  A  C  L  C  S  S  C  Q  R  *  S  A  L  L  A  L  Q  I  W  L  E  R  L  Q  T  C  E  G  E  H  N  I  C  I  C  Y  T  D  W  *  P  S  V  Y  R  Q  S  C  F  C  P  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47571" stop="47560"/>
                    <exon start="46946" stop="46563"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47749" stop="47560"/>
                    <exon start="46946" stop="46936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLVFLNFIINQLQNPIMVFISSLRLKLQPQTMRFLNRSTDVLLTRTSVKKRAVTAHLIIFQPVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49715" PGL_stop="51945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49715" e_stop="51945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="49715" e_stop="51945" e_length="2231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49715" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51193" stop="51945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACAAGCAAGTTCACTCCGATTGAATATCTCCGCCGAGATCCTAGATTTTCCGGTGAGTTTTCCGATCTATTACGATTTGTATAGTTGACCATTATGAATCTTTCTCATATGATGCGATTACAGAAATGTTAGGTCCTTTTGCTATTACCCATTTCCGATCCAAAATATGGATTCGCCAGCGAAAAAAATCTTTACCTTCTCCATCTAGCTTCAATTTAGTAGATTAGACGTTGATTTGTACTGTACATTTCCCGGAAGGAATAAAAGTATCTTGTGAAAATTGAGACCGAGACAGGAAAACTGGGGAAAATGAGTTTAGGTGTAGCGGAGGAGGAATCGGGTAAGGAAATCCAGTTGCCGGCGGATGTAGACTGGCAAATGCTGGACAAATCTAAGTTTTTCTTCCTCGGCGCCGCCTTATTTTCAGGTGTTTCAGCTGTGCTTTATCCTGTTGTGGTGTTGAAGACTCGACAACAGGTAGCCCAAGCTCATCTTTCCTGTTTTAGAACTGCCTTATCCGTTGTTAGGCTTGAAGGAATTCGTGGATTGTATCGGGGGTTTGGGACTTCGTTGATGGGTACAATTCCTGCTAGGGCACTTTATATGACTGCTCTTGAGGTTACCAAGAGTAGTGTTGGTACGGCCACGGTTAGGCTCGGCATTCCTGAGCCAACTGCGACTGCGTTAGCCAGTGCTGCTGCTGGATTGAGCGCAGCTGTGGCCGCACAATTGGTTTGGACTCCGGTGGATGTGGTCAGCCAGCGGCTCATGGTGCAGCGTGTTTGTGCTGCACCAGCATCCTGTAAATATCTCAATGGGATTGATGCTTTTCGACGAATCCTCAAGACAGATGGACCTAAGGGACTCTACAGAGGTTTTGGGTTTTCAATTTTGACATATGCCCCATCCAATGCACTGTGGTGGACATCCTACACCATCACTCAGCGGCTTGTCTGGAGTGGGTATGGATGTTACTTCAGCAAGAATGGTGATGACAGAATTGAGGATAACATCAAAAGTACTCTGAAGCCTGATTCGAAGACTGTTATGATGGTTCAGGGAGTGAGTGCAGCCATGGCCGGAGGTGTTTCAGCGCTGATTACAACACCATTAGACACAATCAAGACAAGATTGCAGGTCCTGGATGGCGATGAGAATGGACGGAGAGGGCCAACAGTAGCTCAGACGGTAAGAAATTTAGTAAAGGAAGGTGGGTGGATGGCTTGTTACAGAGGATTAGGCCCTCGATGGGCTTCAATGTCCATGTCTGCAACCACAATGATCACTACTTATGAATTCCTCAAACGCCTCTCCACAAAGAATCAAGAAAATTGGGCATAGTCATCCCCATAGATAGCTGTCACTCTTCTTAGATTTATGTTTCTCTCTTTGATCCATGTATAAGTTTTCTTTTTGAATGATCCTTTTTTAGGAATCAGTATGCTGAGTTTAGACATAAAAAAAACCTAAATCAAGAACAAAAAGAATGATGAATGTACAAAGTATGAATCTGTATATATAGTCCACTTCACTAAACTTATTTGGCTGTTGTTACTGTTTCTCTTTCCGTTAAGCTACCCTATGCTTTCTCTTGTGCTTGTTTTAACTCTCGCGGTTCTTTCGGAAACAGCCTCTCCATCTCAATGAGGTAGGGATAAGCAGTGTACACTCTACTTCATCTCAATGAACTAAAGTGGGTATGTTGCTGTTGTTGTACTGAGCAATTTGTCTACTTACAGATGTGAGACTTCTTTTTCTTCCTTCAAGAACTATACTTTTTCGAGAATGGAGCCAAAATAGTTGGAAGCTATCCTTCTCAGGCACTGATCAAATAGTAAGATGAGAATCTGTAGTGGGCTTAATTGACTTTTAGCTAATCTCAACCAATGGAAGATGAGATTCTGCCTGATCATGATGTTGATTTGAACATGTTGCGTGCACAAAGGTTTTAGCATATCTATTCTTGATTTAATGTGACAAGAACTCAGTCAGATTGAGGTTGCTCATATTGTCGGATGAGGGTTGTTGTAGGCTGAAAACCTGTGTAAAATTTGTCAATTTGGGAATAGGAGCTAGGAGAGGTAGAGATAAGTAAAAAGAGAAAGTGATTATGTGTATTGTTATTTTGTTGTCTCCTTCCCTCTATTACTTCTCTTTTTTCTTTTTTTCTTTTTGTATGTTGAGTATTTATCGAAAATAATACCTTTTATCTGTTGAGATAGGAATAAA</gDNA_template>
            <first_frame> A  Q  A  S  S  L  R  L  N  I  S  A  E  I  L  D  F  P  V  S  F  P  I  Y  Y  D  L  Y  S  *  P  L  *  I  F  L  I  *  C  D  Y  R  N  V  R  S  F  C  Y  Y  P  F  P  I  Q  N  M  D  S  P  A  K  K  I  F  T  F  S  I  *  L  Q  F  S  R  L  D  V  D  L  Y  C  T  F  P  G  R  N  K  S  I  L  *  K  L  R  P  R  Q  E  N  W  G  K  *  V  *  V  *  R  R  R  N  R  V  R  K  S  S  C  R  R  M  *  T  G  K  C  W  T  N  L  S  F  S  S  S  A  P  P  Y  F  Q  V  F  Q  L  C  F  I  L  L  W  C  *  R  L  D  N  R  *  P  K  L  I  F  P  V  L  E  L  P  Y  P  L  L  G  L  K  E  F  V  D  C  I  G  G  L  G  L  R  *  W  V  Q  F  L  L  G  H  F  I  *  L  L  L  R  L  P  R  V  V  L  V  R  P  R  L  G  S  A  F  L  S  Q  L  R  L  R  *  P  V  L  L  L  D  *  A  Q  L  W  P  H  N  W  F  G  L  R  W  M  W  S  A  S  G  S  W  C  S  V  F  V  L  H  Q  H  P  V  N  I  S  M  G  L  M  L  F  D  E  S  S  R  Q  M  D  L  R  D  S  T  E  V  L  G  F  Q  F  *  H  M  P  H  P  M  H  C  G  G  H  P  T  P  S  L  S  G  L  S  G  V  G  M  D  V  T  S  A  R  M  V  M  T  E  L  R  I  T  S  K  V  L  *  S  L  I  R  R  L  L  *  W  F  R  E  *  V  Q  P  W  P  E  V  F  Q  R  *  L  Q  H  H  *  T  Q  S  R  Q  D  C  R  S  W  M  A  M  R  M  D  G  E  G  Q  Q  *  L  R  R  *  E  I  *  *  R  K  V  G  G  W  L  V  T  E  D  *  A  L  D  G  L  Q  C  P  C  L  Q  P  Q  *  S  L  L  M  N  S  S  N  A  S  P  Q  R  I  K  K  I  G  H  S  H  P  H  R  *  L  S  L  F  L  D  L  C  F  S  L  *  S  M  Y  K  F  S  F  *  M  I  L  F  *  E  S  V  C  *  V  *  T  *  K  K  P  K  S  R  T  K  R  M  M  N  V  Q  S  M  N  L  Y  I  *  S  T  S  L  N  L  F  G  C  C  Y  C  F  S  F  R  *  A  T  L  C  F  L  L  C  L  F  *  L  S  R  F  F  R  K  Q  P  L  H  L  N  E  V  G  I  S  S  V  H  S  T  S  S  Q  *  T  K  V  G  M  L  L  L  L  Y  *  A  I  C  L  L  T  D  V  R  L  L  F  L  P  S  R  T  I  L  F  R  E  W  S  Q  N  S  W  K  L  S  F  S  G  T  D  Q  I  V  R  *  E  S  V  V  G  L  I  D  F  *  L  I  S  T  N  G  R  *  D  S  A  *  S  *  C  *  F  E  H  V  A  C  T  K  V  L  A  Y  L  F  L  I  *  C  D  K  N  S  V  R  L  R  L  L  I  L  S  D  E  G  C  C  R  L  K  T  C  V  K  F  V  N  L  G  I  G  A  R  R  G  R  D  K  *  K  E  K  V  I  M  C  I  V  I  L  L  S  P  S  L  Y  Y  F  S  F  F  F  F  S  F  C  M  L  S  I  Y  R  K  *  Y  L  L  S  V  E  I  G  I   </first_frame>
            <second_frame>  H  K  Q  V  H  S  D  *  I  S  P  P  R  S  *  I  F  R  *  V  F  R  S  I  T  I  C  I  V  D  H  Y  E  S  F  S  Y  D  A  I  T  E  M  L  G  P  F  A  I  T  H  F  R  S  K  I  W  I  R  Q  R  K  K  S  L  P  S  P  S  S  F  N  L  V  D  *  T  L  I  C  T  V  H  F  P  E  G  I  K  V  S  C  E  N  *  D  R  D  R  K  T  G  E  N  E  F  R  C  S  G  G  G  I  G  *  G  N  P  V  A  G  G  C  R  L  A  N  A  G  Q  I  *  V  F  L  P  R  R  R  L  I  F  R  C  F  S  C  A  L  S  C  C  G  V  E  D  S  T  T  G  S  P  S  S  S  F  L  F  *  N  C  L  I  R  C  *  A  *  R  N  S  W  I  V  S  G  V  W  D  F  V  D  G  Y  N  S  C  *  G  T  L  Y  D  C  S  *  G  Y  Q  E  *  C  W  Y  G  H  G  *  A  R  H  S  *  A  N  C  D  C  V  S  Q  C  C  C  W  I  E  R  S  C  G  R  T  I  G  L  D  S  G  G  C  G  Q  P  A  A  H  G  A  A  C  L  C  C  T  S  I  L  *  I  S  Q  W  D  *  C  F  S  T  N  P  Q  D  R  W  T  *  G  T  L  Q  R  F  W  V  F  N  F  D  I  C  P  I  Q  C  T  V  V  D  I  L  H  H  H  S  A  A  C  L  E  W  V  W  M  L  L  Q  Q  E  W  *  *  Q  N  *  G  *  H  Q  K  Y  S  E  A  *  F  E  D  C  Y  D  G  S  G  S  E  C  S  H  G  R  R  C  F  S  A  D  Y  N  T  I  R  H  N  Q  D  K  I  A  G  P  G  W  R  *  E  W  T  E  R  A  N  S  S  S  D  G  K  K  F  S  K  G  R  W  V  D  G  L  L  Q  R  I  R  P  S  M  G  F  N  V  H  V  C  N  H  N  D  H  Y  L  *  I  P  Q  T  P  L  H  K  E  S  R  K  L  G  I  V  I  P  I  D  S  C  H  S  S  *  I  Y  V  S  L  F  D  P  C  I  S  F  L  F  E  *  S  F  F  R  N  Q  Y  A  E  F  R  H  K  K  N  L  N  Q  E  Q  K  E  *  *  M  Y  K  V  *  I  C  I  Y  S  P  L  H  *  T  Y  L  A  V  V  T  V  S  L  S  V  K  L  P  Y  A  F  S  C  A  C  F  N  S  R  G  S  F  G  N  S  L  S  I  S  M  R  *  G  *  A  V  Y  T  L  L  H  L  N  E  L  K  W  V  C  C  C  C  C  T  E  Q  F  V  Y  L  Q  M  *  D  F  F  F  F  L  Q  E  L  Y  F  F  E  N  G  A  K  I  V  G  S  Y  P  S  Q  A  L  I  K  *  *  D  E  N  L  *  W  A  *  L  T  F  S  *  S  Q  P  M  E  D  E  I  L  P  D  H  D  V  D  L  N  M  L  R  A  Q  R  F  *  H  I  Y  S  *  F  N  V  T  R  T  Q  S  D  *  G  C  S  Y  C  R  M  R  V  V  V  G  *  K  P  V  *  N  L  S  I  W  E  *  E  L  G  E  V  E  I  S  K  K  R  K  *  L  C  V  L  L  F  C  C  L  L  P  S  I  T  S  L  F  S  F  F  L  F  V  C  *  V  F  I  E  N  N  T  F  Y  L  L  R  *  E  *  </second_frame>
            <third_frame>   T  S  K  F  T  P  I  E  Y  L  R  R  D  P  R  F  S  G  E  F  S  D  L  L  R  F  V  *  L  T  I  M  N  L  S  H  M  M  R  L  Q  K  C  *  V  L  L  L  L  P  I  S  D  P  K  Y  G  F  A  S  E  K  N  L  Y  L  L  H  L  A  S  I  *  *  I  R  R  *  F  V  L  Y  I  S  R  K  E  *  K  Y  L  V  K  I  E  T  E  T  G  K  L  G  K  M  S  L  G  V  A  E  E  E  S  G  K  E  I  Q  L  P  A  D  V  D  W  Q  M  L  D  K  S  K  F  F  F  L  G  A  A  L  F  S  G  V  S  A  V  L  Y  P  V  V  V  L  K  T  R  Q  Q  V  A  Q  A  H  L  S  C  F  R  T  A  L  S  V  V  R  L  E  G  I  R  G  L  Y  R  G  F  G  T  S  L  M  G  T  I  P  A  R  A  L  Y  M  T  A  L  E  V  T  K  S  S  V  G  T  A  T  V  R  L  G  I  P  E  P  T  A  T  A  L  A  S  A  A  A  G  L  S  A  A  V  A  A  Q  L  V  W  T  P  V  D  V  V  S  Q  R  L  M  V  Q  R  V  C  A  A  P  A  S  C  K  Y  L  N  G  I  D  A  F  R  R  I  L  K  T  D  G  P  K  G  L  Y  R  G  F  G  F  S  I  L  T  Y  A  P  S  N  A  L  W  W  T  S  Y  T  I  T  Q  R  L  V  W  S  G  Y  G  C  Y  F  S  K  N  G  D  D  R  I  E  D  N  I  K  S  T  L  K  P  D  S  K  T  V  M  M  V  Q  G  V  S  A  A  M  A  G  G  V  S  A  L  I  T  T  P  L  D  T  I  K  T  R  L  Q  V  L  D  G  D  E  N  G  R  R  G  P  T  V  A  Q  T  V  R  N  L  V  K  E  G  G  W  M  A  C  Y  R  G  L  G  P  R  W  A  S  M  S  M  S  A  T  T  M  I  T  T  Y  E  F  L  K  R  L  S  T  K  N  Q  E  N  W  A  *  S  S  P  *  I  A  V  T  L  L  R  F  M  F  L  S  L  I  H  V  *  V  F  F  L  N  D  P  F  L  G  I  S  M  L  S  L  D  I  K  K  T  *  I  K  N  K  K  N  D  E  C  T  K  Y  E  S  V  Y  I  V  H  F  T  K  L  I  W  L  L  L  L  F  L  F  P  L  S  Y  P  M  L  S  L  V  L  V  L  T  L  A  V  L  S  E  T  A  S  P  S  Q  *  G  R  D  K  Q  C  T  L  Y  F  I  S  M  N  *  S  G  Y  V  A  V  V  V  L  S  N  L  S  T  Y  R  C  E  T  S  F  S  S  F  K  N  Y  T  F  S  R  M  E  P  K  *  L  E  A  I  L  L  R  H  *  S  N  S  K  M  R  I  C  S  G  L  N  *  L  L  A  N  L  N  Q  W  K  M  R  F  C  L  I  M  M  L  I  *  T  C  C  V  H  K  G  F  S  I  S  I  L  D  L  M  *  Q  E  L  S  Q  I  E  V  A  H  I  V  G  *  G  L  L  *  A  E  N  L  C  K  I  C  Q  F  G  N  R  S  *  E  R  *  R  *  V  K  R  E  S  D  Y  V  Y  C  Y  F  V  V  S  F  P  L  L  L  L  F  F  L  F  F  F  L  Y  V  E  Y  L  S  K  I  I  P  F  I  C  *  D  R  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49981" stop="51057"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYLVKIETETGKLGKMSLGVAEEESGKEIQLPADVDWQMLDKSKFFFLGAALFSGVSAVLYPVVVLKTRQQVAQAHLSCFRTALSVVRLEGIRGLYRGFGTSLMGTIPARALYMTALEVTKSSVGTATVRLGIPEPTATALASAAAGLSAAVAAQLVWTPVDVVSQRLMVQRVCAAPASCKYLNGIDAFRRILKTDGPKGLYRGFGFSILTYAPSNALWWTSYTITQRLVWSGYGCYFSKNGDDRIEDNIKSTLKPDSKTVMMVQGVSAAMAGGVSALITTPLDTIKTRLQVLDGDENGRRGPTVAQTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSTKNQENWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="57281" PGL_stop="52261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57281" e_stop="57065"/>
            <exon e_start="56983" e_stop="56951"/>
            <exon e_start="54936" e_stop="54708"/>
            <exon e_start="53450" e_stop="53315"/>
            <exon e_start="53038" e_stop="52480"/>
            <exon e_start="52292" e_stop="52261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.528" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.993"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.781"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57281" e_stop="57065" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57064" i_stop="56984" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56983" e_stop="56951" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.528" acc_prob="0.988">
            <gDNA_intron_boundary i_start="56950" i_stop="54937" i_length="2014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54936" e_stop="54708" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="54707" i_stop="53451" i_length="1257"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="53450" e_stop="53315" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="53314" i_stop="53039" i_length="276"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53038" e_stop="52480" e_length="559"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52479" i_stop="52293" i_length="187"/>
          </intron>
          <exon e_serial="6" e_score="0.781">
            <gDNA_exon_boundary e_start="52292" e_stop="52261" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57281" stop="57065"/>
              <exon start="56983" stop="56951"/>
              <exon start="54936" stop="54746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57269" stop="57065"/>
              <exon start="56983" stop="56951"/>
              <exon start="54936" stop="54708"/>
              <exon start="53450" stop="53315"/>
              <exon start="53038" stop="52965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53037" stop="52480"/>
              <exon start="52292" stop="52261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53037" stop="52661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGGTAAGCGTATTATCAAATTCTCTCAAACTTTCTTCTTCTTCTCTCATATGATTTTTGACGACGCTGCTTGTAACCGCAGAAGTGGTGTTTAATTATTTTTTTTAAAAAAAGATGGAATTTGGAGCTAAAGGACAGAAGAAGGCAAAACCCATTGATGTCTTCAAGAATGTCAAGGGCAGATATACTGGTCTAATTAAAGCTCTCACAACAG : ATGTGGATGAATTTTATAAGCAGTGTGATCCTG : AAAAGGAGAACTTAAGCTTGTATGGACTCCCAAATGAGCGATGGGAGGTCAATCTGCCTGCTGAAGATTCACCACCAGGCCTTCCAGAGCCTGTTCTTGGTATCAACTTTGCTAGAGAGGGAATGGAACAAAAGGAGTGGCTTTCTTTTGTTGCTTATCACAGTGATTCTTGGTTGCTTGCTATTGCCTTCTACGCTGGTGCTAGATGTGGATTTGGTAAAGCCGACAG : GAAGAAGCTCTTTGACATGATAAATGATTTACCTTCAATACATGAAGTAGTGATTGGTGTTCCAAAGACGCAACAAAAAGAAAAACCTACAGTCGCTAATCAAAGTAAAAACAAATCCAAGCCAAACGCCACTAAG : AGGGCAGCGGAGCCTCAGGATATGTTTACGAAGATGCAGCAAAAATATGAAGAAGATGATGATGATGATGATGACGACGACGAAGCAGGAGAAGAAGATGAGGATGAATGGGGTATTGAGATGGATGTTGAAGAGGAGGAAGGTGAGACACTGTGCGGCATATGTGAGGGGAAGTATGCGAAGGATGAATTTTGGATATGTTGCGATCATTGTGAAACATGGTTCCACGGCCAGTGTGTTAAGATCACCGCTGCCACAGCTGAGTATATGAAGCAATACAAGTGCCCGCCTTGCAGCAGCAAAAGAGCCCGGACTCACTTTACAGAATACTGATCAACAACAGTTCTCTTGCTGCTAACTGTCTATTCATGATGTTTTGCTAAAATGTCTGAAGTATGAAACTGAAGTTAGACTCTGTTAAGACTAACTTCAGTCGTTACGTCTAAAGTTGTCCCGAATTGAGTAGATGTACCAAAATTTTATAAATTTAGGACATTACTTAAACAGTGACACCAAAATTGTGTCTGTGTGTACTCCCCAACCCCACCCAATTTTAAAC : CTATATGATTTTTTAGAAAAAAAATAGAAGAA</gDNA_template>
            <first_frame> E  L  V  S  V  L  S  N  S  L  K  L  S  S  S  S  L  I  *  F  L  T  T  L  L  V  T  A  E  V  V  F  N  Y  F  F  *  K  K  M  E  F  G  A  K  G  Q  K  K  A  K  P  I  D  V  F  K  N  V  K  G  R  Y  T  G  L  I  K  A  L  T  T   : D  V  D  E  F  Y  K  Q  C  D  P   : E  K  E  N  L  S  L  Y  G  L  P  N  E  R  W  E  V  N  L  P  A  E  D  S  P  P  G  L  P  E  P  V  L  G  I  N  F  A  R  E  G  M  E  Q  K  E  W  L  S  F  V  A  Y  H  S  D  S  W  L  L  A  I  A  F  Y  A  G  A  R  C  G  F  G  K  A  D  R :   K  K  L  F  D  M  I  N  D  L  P  S  I  H  E  V  V  I  G  V  P  K  T  Q  Q  K  E  K  P  T  V  A  N  Q  S  K  N  K  S  K  P  N  A  T  K  :  R  A  A  E  P  Q  D  M  F  T  K  M  Q  Q  K  Y  E  E  D  D  D  D  D  D  D  D  D  E  A  G  E  E  D  E  D  E  W  G  I  E  M  D  V  E  E  E  E  G  E  T  L  C  G  I  C  E  G  K  Y  A  K  D  E  F  W  I  C  C  D  H  C  E  T  W  F  H  G  Q  C  V  K  I  T  A  A  T  A  E  Y  M  K  Q  Y  K  C  P  P  C  S  S  K  R  A  R  T  H  F  T  E  Y  *  S  T  T  V  L  L  L  L  T  V  Y  S  *  C  F  A  K  M  S  E  V  *  N  *  S  *  T  L  L  R  L  T  S  V  V  T  S  K  V  V  P  N  *  V  D  V  P  K  F  Y  K  F  R  T  L  L  K  Q  *  H  Q  N  C  V  C  V  Y  S  P  T  P  P  N  F  K   : P  I  *  F  F  R  K  K  I  E  E </first_frame>
            <second_frame>  N  W  *  A  Y  Y  Q  I  L  S  N  F  L  L  L  L  S  Y  D  F  *  R  R  C  L  *  P  Q  K  W  C  L  I  I  F  F  K  K  R  W  N  L  E  L  K  D  R  R  R  Q  N  P  L  M  S  S  R  M  S  R  A  D  I  L  V  *  L  K  L  S  Q  Q  :  M  W  M  N  F  I  S  S  V  I  L  :  K  R  R  T  *  A  C  M  D  S  Q  M  S  D  G  R  S  I  C  L  L  K  I  H  H  Q  A  F  Q  S  L  F  L  V  S  T  L  L  E  R  E  W  N  K  R  S  G  F  L  L  L  L  I  T  V  I  L  G  C  L  L  L  P  S  T  L  V  L  D  V  D  L  V  K  P  T   : G  R  S  S  L  T  *  *  M  I  Y  L  Q  Y  M  K  *  *  L  V  F  Q  R  R  N  K  K  K  N  L  Q  S  L  I  K  V  K  T  N  P  S  Q  T  P  L  R :   G  Q  R  S  L  R  I  C  L  R  R  C  S  K  N  M  K  K  M  M  M  M  M  M  T  T  T  K  Q  E  K  K  M  R  M  N  G  V  L  R  W  M  L  K  R  R  K  V  R  H  C  A  A  Y  V  R  G  S  M  R  R  M  N  F  G  Y  V  A  I  I  V  K  H  G  S  T  A  S  V  L  R  S  P  L  P  Q  L  S  I  *  S  N  T  S  A  R  L  A  A  A  K  E  P  G  L  T  L  Q  N  T  D  Q  Q  Q  F  S  C  C  *  L  S  I  H  D  V  L  L  K  C  L  K  Y  E  T  E  V  R  L  C  *  D  *  L  Q  S  L  R  L  K  L  S  R  I  E  *  M  Y  Q  N  F  I  N  L  G  H  Y  L  N  S  D  T  K  I  V  S  V  C  T  P  Q  P  H  P  I  L  N  :  L  Y  D  F  L  E  K  K  *  K   </second_frame>
            <third_frame>   I  G  K  R  I  I  K  F  S  Q  T  F  F  F  F  S  H  M  I  F  D  D  A  A  C  N  R  R  S  G  V  *  L  F  F  L  K  K  D  G  I  W  S  *  R  T  E  E  G  K  T  H  *  C  L  Q  E  C  Q  G  Q  I  Y  W  S  N  *  S  S  H  N  R :   C  G  *  I  L  *  A  V  *  S  * :   K  G  E  L  K  L  V  W  T  P  K  *  A  M  G  G  Q  S  A  C  *  R  F  T  T  R  P  S  R  A  C  S  W  Y  Q  L  C  *  R  G  N  G  T  K  G  V  A  F  F  C  C  L  S  Q  *  F  L  V  A  C  Y  C  L  L  R  W  C  *  M  W  I  W  *  S  R  Q  :  E  E  A  L  *  H  D  K  *  F  T  F  N  T  *  S  S  D  W  C  S  K  D  A  T  K  R  K  T  Y  S  R  *  S  K  *  K  Q  I  Q  A  K  R  H  *   : E  G  S  G  A  S  G  Y  V  Y  E  D  A  A  K  I  *  R  R  *  *  *  *  *  *  R  R  R  S  R  R  R  R  *  G  *  M  G  Y  *  D  G  C  *  R  G  G  R  *  D  T  V  R  H  M  *  G  E  V  C  E  G  *  I  L  D  M  L  R  S  L  *  N  M  V  P  R  P  V  C  *  D  H  R  C  H  S  *  V  Y  E  A  I  Q  V  P  A  L  Q  Q  Q  K  S  P  D  S  L  Y  R  I  L  I  N  N  S  S  L  A  A  N  C  L  F  M  M  F  C  *  N  V  *  S  M  K  L  K  L  D  S  V  K  T  N  F  S  R  Y  V  *  S  C  P  E  L  S  R  C  T  K  I  L  *  I  *  D  I  T  *  T  V  T  P  K  L  C  L  C  V  L  P  N  P  T  Q  F  *  T :   Y  M  I  F  *  K  K  N  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57170" stop="57065"/>
                    <exon start="56983" stop="56951"/>
                    <exon start="54936" stop="54708"/>
                    <exon start="53450" stop="53315"/>
                    <exon start="53038" stop="52706"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMEFGAKGQKKAKPIDVFKNVKGRYTGLIKALTTDVDEFYKQCDPEKENLSLYGLPNERWEVNLPAEDSPPGLPEPVLGINFAREGMEQKEWLSFVAYHSDSWLLAIAFYAGARCGFGKADRKKLFDMINDLPSIHEVVIGVPKTQQKEKPTVANQSKNKSKPNATKRAAEPQDMFTKMQQKYEEDDDDDDDDDEAGEEDEDEWGIEMDVEEEEGETLCGICEGKYAKDEFWICCDHCETWFHGQCVKITAATAEYMKQYKCPPCSSKRARTHFTEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62770" PGL_stop="58923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62770" e_stop="62646"/>
            <exon e_start="61595" e_stop="61419"/>
            <exon e_start="60638" e_stop="60547"/>
            <exon e_start="60408" e_stop="60337"/>
            <exon e_start="59027" e_stop="58933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62770" e_stop="62646" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.886">
            <gDNA_intron_boundary i_start="62645" i_stop="61596" i_length="1050"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61595" e_stop="61419" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.657">
            <gDNA_intron_boundary i_start="61418" i_stop="60639" i_length="780"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60638" e_stop="60547" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.720" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60408" e_stop="60337" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="59027" e_stop="58933" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62770" stop="62646"/>
              <exon start="61595" stop="61419"/>
              <exon start="60638" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCCAAATATTGTGGTGTTCTGTATACAGAGAGACTGGACTTGGACTTCTTTTACCACCAAAGATTCAGAGGTGCTTGAATTCTGAGTTTGGTTCAACCATAAAGTTTCACTAAATCAACAAG : ATTTACAGATGCAACAAATGTCTACATTTCCTGGTCCTCAGAATACCAAGGAACTGAATCACCATTTTCAAGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAG : GCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT : GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG : GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATA</gDNA_template>
            <first_frame> A  A  K  Y  C  G  V  L  Y  T  E  R  L  D  L  D  F  F  Y  H  Q  R  F  R  G  A  *  I  L  S  L  V  Q  P  *  S  F  T  K  S  T  R :   F  T  D  A  T  N  V  Y  I  S  W  S  S  E  Y  Q  G  T  E  S  P  F  S  R  S  G  F  L  V  Y  S  I  N  E  S  I  M  S  *  S  S  *  *  T  R  N  K  N  P  W  *  K  Q  Y  F  F  A  S  R :   Q  C  *  K  *  W  E  V  R  *  F  P  K  C  V  K  S  G  A  W  L  D  F  R  Y  V  S  D  K  F   : C  C  C  S  F  S  S  P  G  S  L  L  S  R  S  S  C  C  L  W  K  S  N  L   : G  S  I  P  N  V  R  H  G  C  S  S  G  A  T  S  T  *  P  *  A  R  *  A  Y  I  C  Q  C  *  T  I </first_frame>
            <second_frame>  Q  P  N  I  V  V  F  C  I  Q  R  D  W  T  W  T  S  F  T  T  K  D  S  E  V  L  E  F  *  V  W  F  N  H  K  V  S  L  N  Q  Q   : D  L  Q  M  Q  Q  M  S  T  F  P  G  P  Q  N  T  K  E  L  N  H  H  F  Q  D  Q  D  S  S  S  T  Q  S  T  S  Q  S  C  P  E  A  P  N  E  R  E  T  K  I  H  G  K  N  N  I  S  L  R  A   : G  S  V  R  S  S  G  K  S  D  D  S  Q  S  V  S  S  Q  E  H  G  W  T  F  D  T  Y  Q  T  N  F  :  A  V  V  P  F  P  H  P  D  P  Y  Y  H  D  L  V  A  A  Y  G  N  P  T  L  :  V  Q  S  Q  M  L  G  T  V  A  P  R  V  P  L  P  L  D  L  K  Q  D  E  P  I  F  V  N  A  K  Q   </second_frame>
            <third_frame>   S  Q  I  L  W  C  S  V  Y  R  E  T  G  L  G  L  L  L  P  P  K  I  Q  R  C  L  N  S  E  F  G  S  T  I  K  F  H  *  I  N  K  :  I  Y  R  C  N  K  C  L  H  F  L  V  L  R  I  P  R  N  *  I  T  I  F  K  I  R  I  P  R  L  L  N  Q  R  V  N  H  V  L  K  L  L  M  N  E  K  Q  K  S  M  V  K  T  I  F  L  C  E  Q  :  A  V  L  E  V  V  G  S  P  M  I  P  K  V  C  Q  V  R  S  M  V  G  L  S  I  R  I  R  Q  I  L :   L  L  F  L  F  L  T  R  I  L  T  I  T  I  *  L  L  P  M  E  I  Q  P  W :   F  N  P  K  C  *  A  R  L  L  L  G  C  H  F  H  L  T  L  S  K  M  S  L  Y  L  S  M  L  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62682" stop="62646"/>
                    <exon start="61595" stop="61419"/>
                    <exon start="60638" stop="60547"/>
                    <exon start="60408" stop="60337"/>
                    <exon start="59027" stop="58935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFNHKVSLNQQDLQMQQMSTFPGPQNTKELNHHFQDQDSSSTQSTSQSCPEAPNERETKIHGKNNISLRAGSVRSSGKSDDSQSVSSQEHGWTFDTYQTNFAVVPFPHPDPYYHDLVAAYGNPTLVQSQMLGTVAPRVPLPLDLKQDEPIFVNAKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60994" e_stop="60547"/>
            <exon e_start="60408" e_stop="60337"/>
            <exon e_start="59027" e_stop="58923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60994" e_stop="60547" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.984">
            <gDNA_intron_boundary i_start="60546" i_stop="60409" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60408" e_stop="60337" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60336" i_stop="59028" i_length="1309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59027" e_stop="58923" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60994" stop="60547"/>
              <exon start="60408" stop="60337"/>
              <exon start="59027" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTGGAGAAAGTTATCTCTTTCTAGCTTTATTGCTTTGGGGCGTAATGCCTTTACACCCCCACTTAAGCATCGAAAGATATACACATACTAAATGTTGTGTCATGCTGCCCTTCATTTCTCATTCCTTTCGAAGGGCAGACATTCTTATTATCTAAATCATCTAGCTATTTCCTGACCCACATGATATATAAGGTTGATGAGGTTGTATTTCCTATTTGGCTTACTAGCTGTTAGTGAGTTAAGTTATTTTAAATAGCCACAACTCTCCTTTTCCCTCAACTTTCACTTATTTCTTTTCTGACTTCTGCATTTTCTTACTCTGATCGTGTGGATATCTGCTTGGACCACTCCAGGCAGTGTTAGAAGTAGTGGGAAGTCCGATGATTCCCAAAGTGTGTCAAGTCAGGAGCATGGTTGGACTTTCGATACGTATCAGACAAATTTT : GCTGTTGTTCCTTTTCCTCACCCGGATCCTTACTATCACGATCTAGTTGCTGCCTATGGAAATCCAACCTTG : GTTCAATCCCAAATGTTAGGCACGGTTGCTCCTCGGGTGCCACTTCCACTTGACCTTAAGCAAGATGAGCCTATATTTGTCAATGCTAAACAATATCAGGCTATC</gDNA_template>
            <first_frame> R  L  E  K  V  I  S  F  *  L  Y  C  F  G  A  *  C  L  Y  T  P  T  *  A  S  K  D  I  H  I  L  N  V  V  S  C  C  P  S  F  L  I  P  F  E  G  Q  T  F  L  L  S  K  S  S  S  Y  F  L  T  H  M  I  Y  K  V  D  E  V  V  F  P  I  W  L  T  S  C  *  *  V  K  L  F  *  I  A  T  T  L  L  F  P  Q  L  S  L  I  S  F  L  T  S  A  F  S  Y  S  D  R  V  D  I  C  L  D  H  S  R  Q  C  *  K  *  W  E  V  R  *  F  P  K  C  V  K  S  G  A  W  L  D  F  R  Y  V  S  D  K  F   : C  C  C  S  F  S  S  P  G  S  L  L  S  R  S  S  C  C  L  W  K  S  N  L   : G  S  I  P  N  V  R  H  G  C  S  S  G  A  T  S  T  *  P  *  A  R  *  A  Y  I  C  Q  C  *  T  I  S  G  Y  </first_frame>
            <second_frame>  D  W  R  K  L  S  L  S  S  F  I  A  L  G  R  N  A  F  T  P  P  L  K  H  R  K  I  Y  T  Y  *  M  L  C  H  A  A  L  H  F  S  F  L  S  K  G  R  H  S  Y  Y  L  N  H  L  A  I  S  *  P  T  *  Y  I  R  L  M  R  L  Y  F  L  F  G  L  L  A  V  S  E  L  S  Y  F  K  *  P  Q  L  S  F  S  L  N  F  H  L  F  L  F  *  L  L  H  F  L  T  L  I  V  W  I  S  A  W  T  T  P  G  S  V  R  S  S  G  K  S  D  D  S  Q  S  V  S  S  Q  E  H  G  W  T  F  D  T  Y  Q  T  N  F  :  A  V  V  P  F  P  H  P  D  P  Y  Y  H  D  L  V  A  A  Y  G  N  P  T  L  :  V  Q  S  Q  M  L  G  T  V  A  P  R  V  P  L  P  L  D  L  K  Q  D  E  P  I  F  V  N  A  K  Q  Y  Q  A  I </second_frame>
            <third_frame>   T  G  E  S  Y  L  F  L  A  L  L  L  W  G  V  M  P  L  H  P  H  L  S  I  E  R  Y  T  H  T  K  C  C  V  M  L  P  F  I  S  H  S  F  R  R  A  D  I  L  I  I  *  I  I  *  L  F  P  D  P  H  D  I  *  G  *  *  G  C  I  S  Y  L  A  Y  *  L  L  V  S  *  V  I  L  N  S  H  N  S  P  F  P  S  T  F  T  Y  F  F  S  D  F  C  I  F  L  L  *  S  C  G  Y  L  L  G  P  L  Q  A  V  L  E  V  V  G  S  P  M  I  P  K  V  C  Q  V  R  S  M  V  G  L  S  I  R  I  R  Q  I  L :   L  L  F  L  F  L  T  R  I  L  T  I  T  I  *  L  L  P  M  E  I  Q  P  W :   F  N  P  K  C  *  A  R  L  L  L  G  C  H  F  H  L  T  L  S  K  M  S  L  Y  L  S  M  L  N  N  I  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60690" stop="60547"/>
                    <exon start="60408" stop="60337"/>
                    <exon start="59027" stop="58923"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHFLTLIVWISAWTTPGSVRSSGKSDDSQSVSSQEHGWTFDTYQTNFAVVPFPHPDPYYHDLVAAYGNPTLVQSQMLGTVAPRVPLPLDLKQDEPIFVNAKQYQAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61525" e_stop="61075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="61525" e_stop="61075" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61525" stop="61075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCAGGATTCCTCGTCTACTCAATCAACGAGTCAATCATGTCCTGAAGCTCCTAATGAACGAGAAACAAAAATCCATGGTAAAAACAATATTTCTTTGCGAGCAGGTGAGGATATTCACTATTGTTCTGCATCTAGTTTTATATATACAACACTTTAAGTTATGTCAGAGAAGTTTTGAAACAAAGTAATCGTGTTCATGATTAGCTTGTTTATAACTTTTTACCATACATCAATTAGGAGAAGCTAATTGATAGGAGTGTTGAAGAGAAATTTGCAAATTGATTGTCTAGTAGGTTTATCAATTTAAGTACTTCCATGTTGTTCCTCCAAATGTGATCGGTTACAACCTTTTAAATGTGGTGGATTGTAGGTTCTTGTTAGCCTGCTAAGGAGGCACCACAGAAATGAACTTGAAATGTCGGTACAAGGCCTGTACTGCAGATTGGTT</gDNA_template>
            <first_frame> R  S  G  F  L  V  Y  S  I  N  E  S  I  M  S  *  S  S  *  *  T  R  N  K  N  P  W  *  K  Q  Y  F  F  A  S  R  *  G  Y  S  L  L  F  C  I  *  F  Y  I  Y  N  T  L  S  Y  V  R  E  V  L  K  Q  S  N  R  V  H  D  *  L  V  Y  N  F  L  P  Y  I  N  *  E  K  L  I  D  R  S  V  E  E  K  F  A  N  *  L  S  S  R  F  I  N  L  S  T  S  M  L  F  L  Q  M  *  S  V  T  T  F  *  M  W  W  I  V  G  S  C  *  P  A  K  E  A  P  Q  K  *  T  *  N  V  G  T  R  P  V  L  Q  I  G  </first_frame>
            <second_frame>  D  Q  D  S  S  S  T  Q  S  T  S  Q  S  C  P  E  A  P  N  E  R  E  T  K  I  H  G  K  N  N  I  S  L  R  A  G  E  D  I  H  Y  C  S  A  S  S  F  I  Y  T  T  L  *  V  M  S  E  K  F  *  N  K  V  I  V  F  M  I  S  L  F  I  T  F  Y  H  T  S  I  R  R  S  *  L  I  G  V  L  K  R  N  L  Q  I  D  C  L  V  G  L  S  I  *  V  L  P  C  C  S  S  K  C  D  R  L  Q  P  F  K  C  G  G  L  *  V  L  V  S  L  L  R  R  H  H  R  N  E  L  E  M  S  V  Q  G  L  Y  C  R  L  V </second_frame>
            <third_frame>   I  R  I  P  R  L  L  N  Q  R  V  N  H  V  L  K  L  L  M  N  E  K  Q  K  S  M  V  K  T  I  F  L  C  E  Q  V  R  I  F  T  I  V  L  H  L  V  L  Y  I  Q  H  F  K  L  C  Q  R  S  F  E  T  K  *  S  C  S  *  L  A  C  L  *  L  F  T  I  H  Q  L  G  E  A  N  *  *  E  C  *  R  E  I  C  K  L  I  V  *  *  V  Y  Q  F  K  Y  F  H  V  V  P  P  N  V  I  G  Y  N  L  L  N  V  V  D  C  R  F  L  L  A  C  *  G  G  T  T  E  M  N  L  K  C  R  Y  K  A  C  T  A  D  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0142A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="66917" PGL_stop="62935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66917" e_stop="66697"/>
            <exon e_start="66568" e_stop="66422"/>
            <exon e_start="65603" e_stop="65511"/>
            <exon e_start="65365" e_stop="65303"/>
            <exon e_start="64100" e_stop="63736"/>
            <exon e_start="63612" e_stop="63576"/>
            <exon e_start="62942" e_stop="62935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.898" acc_prob="0.572" e_score="0.459"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66917" e_stop="66697" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.923">
            <gDNA_intron_boundary i_start="66696" i_stop="66569" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66568" e_stop="66422" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.821" acc_prob="0.985">
            <gDNA_intron_boundary i_start="66421" i_stop="65604" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65603" e_stop="65511" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65510" i_stop="65366" i_length="145"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65365" e_stop="65303" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65302" i_stop="64101" i_length="1202"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="64100" e_stop="63736" e_length="365"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63735" i_stop="63613" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="0.459">
            <gDNA_exon_boundary e_start="63612" e_stop="63576" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.572">
            <gDNA_intron_boundary i_start="63575" i_stop="62943" i_length="633"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="62942" e_stop="62935" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66917" stop="66697"/>
              <exon start="66568" stop="66422"/>
              <exon start="65603" stop="65511"/>
              <exon start="65365" stop="65303"/>
              <exon start="64100" stop="63736"/>
              <exon start="63612" stop="63576"/>
              <exon start="62942" stop="62935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGATCACAGGTTCTTTTAGTGAAAAGGGGGCTGTTGGGTCTTCCAAGAGTCGAGACAACACCCGATCTGTTAATTCTTGTGTTAGACCTAGCAGTTCTGCTTTATCTTCTATTGATAGAGCAGGTGCTGCATCTAGCAATGGATTATCACGTAGCTCTTCCGTGAGTTCATTATCTTCAGAAAAATCCACGAAGTCCACATTAAATCCACATGCTAAG : GAATTTAAATTTAATCCCAGTGCAAAGAGCTTTGTCCCATCTCAAGCGACTTTGAGGCCGACATCTCCAGTGTCTGATAATTCCTTCTACTATCCAGCTGGGATGGCTGCTATGCCACACATGCATGGCATGTCTATGGGCTTAGGG : GTTGGTCCATCGTTTGCTGGACATCAGTCTGTTGTATATAATCCACAGGGTACCCCTGTGCCACAGCCATATTTTCATCCAAATGGACCTCAG : TATGGACAGCAGATGATGATTGGTCACCCTCGGCAAGTTGTCTACATGCCAACTTATCCCCCT : GAGTCACCGTACAAGGGAAGGGGAGAGTATTGACCAGTTCTTGGTGATCTGCATTGCTTGGTGGCTTAACCCTTTGCTGATATTGGAAACAAAATTCTGACAGTAGATTGCATGGATCATTTGTTGGTGCATTAATTCTTCTGATAAAATAGCTGCAATCTGCACCTGCTGGCTGAAATGGTTTTGTTAGCACTCCTGTATAATGACGAATTAATTATTCTGCTTTTCATAATCGTAGTGTTCTAGCTCTTAGGTGTTCTTTGTCATCATACTACAGATTATTTTTCATCTTTTGGGTTTCTTCAACTTTTTTTTTTCCTTGGAAAATATTTAACCAGCCTCCTATATTGTCTTATTACATGATA : TGTTAAAGAAGAGGAGGCATAGATAGATAGTCCTTTG : AGGAAGAG</gDNA_template>
            <first_frame> K  R  S  Q  V  L  L  V  K  R  G  L  L  G  L  P  R  V  E  T  T  P  D  L  L  I  L  V  L  D  L  A  V  L  L  Y  L  L  L  I  E  Q  V  L  H  L  A  M  D  Y  H  V  A  L  P  *  V  H  Y  L  Q  K  N  P  R  S  P  H  *  I  H  M  L  R :   N  L  N  L  I  P  V  Q  R  A  L  S  H  L  K  R  L  *  G  R  H  L  Q  C  L  I  I  P  S  T  I  Q  L  G  W  L  L  C  H  T  C  M  A  C  L  W  A  *  G :   L  V  H  R  L  L  D  I  S  L  L  Y  I  I  H  R  V  P  L  C  H  S  H  I  F  I  Q  M  D  L  S :   M  D  S  R  *  *  L  V  T  L  G  K  L  S  T  C  Q  L  I  P  L :   S  H  R  T  R  E  G  E  S  I  D  Q  F  L  V  I  C  I  A  W  W  L  N  P  L  L  I  L  E  T  K  F  *  Q  *  I  A  W  I  I  C  W  C  I  N  S  S  D  K  I  A  A  I  C  T  C  W  L  K  W  F  C  *  H  S  C  I  M  T  N  *  L  F  C  F  S  *  S  *  C  S  S  S  *  V  F  F  V  I  I  L  Q  I  I  F  H  L  L  G  F  F  N  F  F  F  S  L  E  N  I  *  P  A  S  Y  I  V  L  L  H  D   : M  L  K  K  R  R  H  R  *  I  V  L  * :   G  R  </first_frame>
            <second_frame>  K  D  H  R  F  F  *  *  K  G  G  C  W  V  F  Q  E  S  R  Q  H  P  I  C  *  F  L  C  *  T  *  Q  F  C  F  I  F  Y  *  *  S  R  C  C  I  *  Q  W  I  I  T  *  L  F  R  E  F  I  I  F  R  K  I  H  E  V  H  I  K  S  T  C  *   : G  I  *  I  *  S  Q  C  K  E  L  C  P  I  S  S  D  F  E  A  D  I  S  S  V  *  *  F  L  L  L  S  S  W  D  G  C  Y  A  T  H  A  W  H  V  Y  G  L  R   : G  W  S  I  V  C  W  T  S  V  C  C  I  *  S  T  G  Y  P  C  A  T  A  I  F  S  S  K  W  T  S   : V  W  T  A  D  D  D  W  S  P  S  A  S  C  L  H  A  N  L  S  P   : *  V  T  V  Q  G  K  G  R  V  L  T  S  S  W  *  S  A  L  L  G  G  L  T  L  C  *  Y  W  K  Q  N  S  D  S  R  L  H  G  S  F  V  G  A  L  I  L  L  I  K  *  L  Q  S  A  P  A  G  *  N  G  F  V  S  T  P  V  *  *  R  I  N  Y  S  A  F  H  N  R  S  V  L  A  L  R  C  S  L  S  S  Y  Y  R  L  F  F  I  F  W  V  S  S  T  F  F  F  P  W  K  I  F  N  Q  P  P  I  L  S  Y  Y  M  I  :  C  *  R  R  G  G  I  D  R  *  S  F   : E  E  E </second_frame>
            <third_frame>   K  I  T  G  S  F  S  E  K  G  A  V  G  S  S  K  S  R  D  N  T  R  S  V  N  S  C  V  R  P  S  S  S  A  L  S  S  I  D  R  A  G  A  A  S  S  N  G  L  S  R  S  S  S  V  S  S  L  S  S  E  K  S  T  K  S  T  L  N  P  H  A  K  :  E  F  K  F  N  P  S  A  K  S  F  V  P  S  Q  A  T  L  R  P  T  S  P  V  S  D  N  S  F  Y  Y  P  A  G  M  A  A  M  P  H  M  H  G  M  S  M  G  L  G  :  V  G  P  S  F  A  G  H  Q  S  V  V  Y  N  P  Q  G  T  P  V  P  Q  P  Y  F  H  P  N  G  P  Q  :  Y  G  Q  Q  M  M  I  G  H  P  R  Q  V  V  Y  M  P  T  Y  P  P  :  E  S  P  Y  K  G  R  G  E  Y  *  P  V  L  G  D  L  H  C  L  V  A  *  P  F  A  D  I  G  N  K  I  L  T  V  D  C  M  D  H  L  L  V  H  *  F  F  *  *  N  S  C  N  L  H  L  L  A  E  M  V  L  L  A  L  L  Y  N  D  E  L  I  I  L  L  F  I  I  V  V  F  *  L  L  G  V  L  C  H  H  T  T  D  Y  F  S  S  F  G  F  L  Q  L  F  F  F  L  G  K  Y  L  T  S  L  L  Y  C  L  I  T  *  Y :   V  K  E  E  E  A  *  I  D  S  P  L  :  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66915" stop="66697"/>
                    <exon start="66568" stop="66422"/>
                    <exon start="65603" stop="65511"/>
                    <exon start="65365" stop="65303"/>
                    <exon start="64100" stop="64068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KITGSFSEKGAVGSSKSRDNTRSVNSCVRPSSSALSSIDRAGAASSNGLSRSSSVSSLSSEKSTKSTLNPHAKEFKFNPSAKSFVPSQATLRPTSPVSDNSFYYPAGMAAMPHMHGMSMGLGVGPSFAGHQSVVYNPQGTPVPQPYFHPNGPQYGQQMMIGHPRQVVYMPTYPPESPYKGRGEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="82350" PGL_stop="72416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82350" e_stop="81813"/>
            <exon e_start="80446" e_stop="80224"/>
            <exon e_start="80104" e_stop="79824"/>
            <exon e_start="79264" e_stop="78937"/>
            <exon e_start="77143" e_stop="76887"/>
            <exon e_start="76240" e_stop="75363"/>
            <exon e_start="75230" e_stop="75224"/>
            <exon e_start="74121" e_stop="74107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.900" acc_prob="0.445" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.857"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82350" e_stop="81813" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81812" i_stop="80447" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80446" e_stop="80224" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80223" i_stop="80105" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80104" e_stop="79824" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79823" i_stop="79265" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79264" e_stop="78937" e_length="328"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78936" i_stop="77144" i_length="1793"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="77143" e_stop="76887" e_length="257"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76886" i_stop="76241" i_length="646"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76240" e_stop="75363" e_length="878"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.445">
            <gDNA_intron_boundary i_start="75362" i_stop="75231" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="0.857">
            <gDNA_exon_boundary e_start="75230" e_stop="75224" e_length="7"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75223" i_stop="74122" i_length="1102"/>
          </intron>
          <exon e_serial="8" e_score="0.733">
            <gDNA_exon_boundary e_start="74121" e_stop="74107" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82350" stop="81813"/>
              <exon start="80446" stop="80224"/>
              <exon start="80104" stop="79824"/>
              <exon start="79264" stop="78937"/>
              <exon start="77143" stop="76887"/>
              <exon start="76240" stop="75363"/>
              <exon start="75230" stop="75224"/>
              <exon start="74121" stop="74107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCCGTTGCCGGCGGCGGCTTCCGGTGGTCTCTGTTCTTATAGAATATAGGAAGCTCTCTCCGTATGTTATGTTAATTGAAGTAAAATAAAAGATAAAGAGATGTCGTTATTACGAAGAAGAAAAGCACCTGAAAATGAAATTCAACCGGATGTGGAGCCAAAGCTTGATGCGGAAGAAGACGATAAGAAGAGTAGGAAGAAGAATGTGAAGTCTGGAAAGAAGAAGAAATGGTCGTGTATCGATAATTGCTGTTGGTTCGTAGGATGCATATGTTGTGTGTGGTGGATTTTGTTGTTTTTATACAATGCTATGCCGGCGTCGTTCCCGCAGTATGTTACGGAGGCGATTACAGGCCCGTTACCTGATCCACCGGGCATCAAGTTGCAGAAGGAAGGGTTGAAGGCTAAGCATCCGGTGGTATTTATTCCTGGAATTGTCACGTGTGGACTTGAACTGTGGGAAGGACATCAGTGTGCTGAAGGATTGTTTCGGAAGCGGCTTTGGGGCGGGACTTTTGGAGAAGTGTACAAAAG : ACCACTATGCTGGGTGAACCACATGACATTAGATAATGAAACTGGGATGGATCCTCCTGGTATTAGAGTTAGGCCAGTTAGTGGACTTGTTGCTGCAGATTACTTTGCTCCAGGATACTTTGTCTGGGCAGTTTTGATTGCTAACTTGGCTCGAATTGGATACGAGGAGAAAACCATGTATATGGCTGCATATGATTGGAGGCTTGCCTTTCAGAACACCGAG : GTGCGAGACCAGACCCTAAGTCGGATAAAAAGCAATATAGAACTGATGGTTGCAACCAGTGGCAAGAAGGCAGTAATTGTTCCACATTCCATGGGGGTTGTATACTTTTTGCATTTTATGAAGTGGGTGGAGGCACCAGCTCCTGTGGGTGGTGGTGGTGGACCCGATTGGTGCGCCAAGCACATTAAAGCTGTGATGAATATTGGTGGGCCATTGCTAGGTGTTCCAAAATCTATAGCTGGCCTTTTCTCAGCTGAAGCACGGGATATTGCTGTTGCCAG : GGCTCTGGCTCCAGGTGTTCTGGACACGGATATGTTCCATCTTCAAACATTAGAGCACATAATGAAGATGTCACGAACCTGGGATGCAACCATGTCAATGATACCAAGAGGAGGGGACACGATCTGGGGCGGTCTTGAATGGTCACCCGAGGAAGGCTATTCTCCTTGCAGAAGTAAGTCCAGAGACGATGCTGCTCAGAATTCAGGACATCACGAGAATCAAACTACAGATTCTAAAGCAAAATATTACAGTTATGGAAGGATGATGTCCTTTGGAAAGGATGCAGCAGAAGCTCATCCATCAGATCTTAAGAGGATTGACTTCAGG : GATGCTGTTAAGGGCAGTAATGTTGCAAATAACACCTGTGATGTGTGGAACGAGTACCAAGACATGGGTGTTAGTGGCACTAAAGCAGTGGAAGAGTACAAGGTTTATACAGCTGGAGAGATTGTGGATTTGCTCAACTTTGTTGCCCCGAAAATGATGGCCCGTGGTAATGCTCACTTTTCATATGGGATAGCTGATGATTTGGATGATCCTAAGTATTCACACTACAAATATTGGTCAAATCCATTGGAGACAAA : GTTACCAAATGCTCCTGACATGGAGATCTATTCACTGTATGGAGTTGGCATTGAAACTGAAAGAGCATATGTTTACAAGCGGATACCTACAGCAGGATGCAATATTCCATTCCAGATTGATACTTCAGCTGATGATAATGATGAAGGTAGCTGCTTGAAATCTGGTGTTTACACGGTAGATGGTGATGAGACTGTGCCTGCATTAAGCGCAGGATTCATGTGTGCAAAAGGATGGCGAGGAAAAACTAGATTTAATCCCTCTGGTATCAAAACTTATATAAGGGAGTATTTTCATGCTCCCCCTGCAAACCTTCTTGAGGGTCGTGGTACACAGAGTGGTGCACATGTTGATATAATGGGAAATTTCGCTTTGATAGAGGATGTAATGAGAGTTGCTGCTGGTGGAACAAGTAAAAACTTGGGAGGTGATCAAGTTTACTCAGATATCTTCAAGTGGTCTGAGAAGATCAATTTACGTTTGTGATTATCTGTCGAAACTCACCAGTTTCATTGTGTCAACATACCAGCTTGACATGTTATTTATGAACTTACATACCCTTTCCACTGGATGCCATTCAAATATTCAGAAATGAACAGGTATTTTTCCAGATATAGTGCAGGATTTATTACTTCCGGTGGTGTAAATTGTAACATTAACGCAGCTCATCTCGCTATGCAACAACAAAGAATAATAGGTGTGTAGTAGGGATTGAGTTTGATGTTGTACCATTAAAGCTTATAATTAGCAGTGTAAGTGAAAGCTGTCGTACTACAGGTGTTCATCCTCTACATTTTATTTGTCCATTTCGACTTTTTATTTGTCCCTTTTTGCTTATTTTTGACAAATAAAAAAAAGATTGATATTTTTTTTACCTTTT : AGAAAAA : GAAAAAGAAACCCCG</gDNA_template>
            <first_frame> F  S  R  C  R  R  R  L  P  V  V  S  V  L  I  E  Y  R  K  L  S  P  Y  V  M  L  I  E  V  K  *  K  I  K  R  C  R  Y  Y  E  E  E  K  H  L  K  M  K  F  N  R  M  W  S  Q  S  L  M  R  K  K  T  I  R  R  V  G  R  R  M  *  S  L  E  R  R  R  N  G  R  V  S  I  I  A  V  G  S  *  D  A  Y  V  V  C  G  G  F  C  C  F  Y  T  M  L  C  R  R  R  S  R  S  M  L  R  R  R  L  Q  A  R  Y  L  I  H  R  A  S  S  C  R  R  K  G  *  R  L  S  I  R  W  Y  L  F  L  E  L  S  R  V  D  L  N  C  G  K  D  I  S  V  L  K  D  C  F  G  S  G  F  G  A  G  L  L  E  K  C  T  K   : D  H  Y  A  G  *  T  T  *  H  *  I  M  K  L  G  W  I  L  L  V  L  E  L  G  Q  L  V  D  L  L  L  Q  I  T  L  L  Q  D  T  L  S  G  Q  F  *  L  L  T  W  L  E  L  D  T  R  R  K  P  C  I  W  L  H  M  I  G  G  L  P  F  R  T  P  R :   C  E  T  R  P  *  V  G  *  K  A  I  *  N  *  W  L  Q  P  V  A  R  R  Q  *  L  F  H  I  P  W  G  L  Y  T  F  C  I  L  *  S  G  W  R  H  Q  L  L  W  V  V  V  V  D  P  I  G  A  P  S  T  L  K  L  *  *  I  L  V  G  H  C  *  V  F  Q  N  L  *  L  A  F  S  Q  L  K  H  G  I  L  L  L  P   : G  L  W  L  Q  V  F  W  T  R  I  C  S  I  F  K  H  *  S  T  *  *  R  C  H  E  P  G  M  Q  P  C  Q  *  Y  Q  E  E  G  T  R  S  G  A  V  L  N  G  H  P  R  K  A  I  L  L  A  E  V  S  P  E  T  M  L  L  R  I  Q  D  I  T  R  I  K  L  Q  I  L  K  Q  N  I  T  V  M  E  G  *  C  P  L  E  R  M  Q  Q  K  L  I  H  Q  I  L  R  G  L  T  S  G :   M  L  L  R  A  V  M  L  Q  I  T  P  V  M  C  G  T  S  T  K  T  W  V  L  V  A  L  K  Q  W  K  S  T  R  F  I  Q  L  E  R  L  W  I  C  S  T  L  L  P  R  K  *  W  P  V  V  M  L  T  F  H  M  G  *  L  M  I  W  M  I  L  S  I  H  T  T  N  I  G  Q  I  H  W  R  Q   : S  Y  Q  M  L  L  T  W  R  S  I  H  C  M  E  L  A  L  K  L  K  E  H  M  F  T  S  G  Y  L  Q  Q  D  A  I  F  H  S  R  L  I  L  Q  L  M  I  M  M  K  V  A  A  *  N  L  V  F  T  R  *  M  V  M  R  L  C  L  H  *  A  Q  D  S  C  V  Q  K  D  G  E  E  K  L  D  L  I  P  L  V  S  K  L  I  *  G  S  I  F  M  L  P  L  Q  T  F  L  R  V  V  V  H  R  V  V  H  M  L  I  *  W  E  I  S  L  *  *  R  M  *  *  E  L  L  L  V  E  Q  V  K  T  W  E  V  I  K  F  T  Q  I  S  S  S  G  L  R  R  S  I  Y  V  C  D  Y  L  S  K  L  T  S  F  I  V  S  T  Y  Q  L  D  M  L  F  M  N  L  H  T  L  S  T  G  C  H  S  N  I  Q  K  *  T  G  I  F  P  D  I  V  Q  D  L  L  L  P  V  V  *  I  V  T  L  T  Q  L  I  S  L  C  N  N  K  E  *  *  V  C  S  R  D  *  V  *  C  C  T  I  K  A  Y  N  *  Q  C  K  *  K  L  S  Y  Y  R  C  S  S  S  T  F  Y  L  S  I  S  T  F  Y  L  S  L  F  A  Y  F  *  Q  I  K  K  R  L  I  F  F  L  P  F  :  R  K   : R  K  R  N  P  </first_frame>
            <second_frame>  S  A  V  A  G  G  G  F  R  W  S  L  F  L  *  N  I  G  S  S  L  R  M  L  C  *  L  K  *  N  K  R  *  R  D  V  V  I  T  K  K  K  S  T  *  K  *  N  S  T  G  C  G  A  K  A  *  C  G  R  R  R  *  E  E  *  E  E  E  C  E  V  W  K  E  E  E  M  V  V  Y  R  *  L  L  L  V  R  R  M  H  M  L  C  V  V  D  F  V  V  F  I  Q  C  Y  A  G  V  V  P  A  V  C  Y  G  G  D  Y  R  P  V  T  *  S  T  G  H  Q  V  A  E  G  R  V  E  G  *  A  S  G  G  I  Y  S  W  N  C  H  V  W  T  *  T  V  G  R  T  S  V  C  *  R  I  V  S  E  A  A  L  G  R  D  F  W  R  S  V  Q  K  :  T  T  M  L  G  E  P  H  D  I  R  *  *  N  W  D  G  S  S  W  Y  *  S  *  A  S  *  W  T  C  C  C  R  L  L  C  S  R  I  L  C  L  G  S  F  D  C  *  L  G  S  N  W  I  R  G  E  N  H  V  Y  G  C  I  *  L  E  A  C  L  S  E  H  R   : G  A  R  P  D  P  K  S  D  K  K  Q  Y  R  T  D  G  C  N  Q  W  Q  E  G  S  N  C  S  T  F  H  G  G  C  I  L  F  A  F  Y  E  V  G  G  G  T  S  S  C  G  W  W  W  W  T  R  L  V  R  Q  A  H  *  S  C  D  E  Y  W  W  A  I  A  R  C  S  K  I  Y  S  W  P  F  L  S  *  S  T  G  Y  C  C  C  Q  :  G  S  G  S  R  C  S  G  H  G  Y  V  P  S  S  N  I  R  A  H  N  E  D  V  T  N  L  G  C  N  H  V  N  D  T  K  R  R  G  H  D  L  G  R  S  *  M  V  T  R  G  R  L  F  S  L  Q  K  *  V  Q  R  R  C  C  S  E  F  R  T  S  R  E  S  N  Y  R  F  *  S  K  I  L  Q  L  W  K  D  D  V  L  W  K  G  C  S  R  S  S  S  I  R  S  *  E  D  *  L  Q   : G  C  C  *  G  Q  *  C  C  K  *  H  L  *  C  V  E  R  V  P  R  H  G  C  *  W  H  *  S  S  G  R  V  Q  G  L  Y  S  W  R  D  C  G  F  A  Q  L  C  C  P  E  N  D  G  P  W  *  C  S  L  F  I  W  D  S  *  *  F  G  *  S  *  V  F  T  L  Q  I  L  V  K  S  I  G  D  K  :  V  T  K  C  S  *  H  G  D  L  F  T  V  W  S  W  H  *  N  *  K  S  I  C  L  Q  A  D  T  Y  S  R  M  Q  Y  S  I  P  D  *  Y  F  S  *  *  *  *  *  R  *  L  L  E  I  W  C  L  H  G  R  W  *  *  D  C  A  C  I  K  R  R  I  H  V  C  K  R  M  A  R  K  N  *  I  *  S  L  W  Y  Q  N  L  Y  K  G  V  F  S  C  S  P  C  K  P  S  *  G  S  W  Y  T  E  W  C  T  C  *  Y  N  G  K  F  R  F  D  R  G  C  N  E  S  C  C  W  W  N  K  *  K  L  G  R  *  S  S  L  L  R  Y  L  Q  V  V  *  E  D  Q  F  T  F  V  I  I  C  R  N  S  P  V  S  L  C  Q  H  T  S  L  T  C  Y  L  *  T  Y  I  P  F  P  L  D  A  I  Q  I  F  R  N  E  Q  V  F  F  Q  I  *  C  R  I  Y  Y  F  R  W  C  K  L  *  H  *  R  S  S  S  R  Y  A  T  T  K  N  N  R  C  V  V  G  I  E  F  D  V  V  P  L  K  L  I  I  S  S  V  S  E  S  C  R  T  T  G  V  H  P  L  H  F  I  C  P  F  R  L  F  I  C  P  F  L  L  I  F  D  K  *  K  K  D  *  Y  F  F  Y  L  L :   E  K  :  E  K  E  T  P </second_frame>
            <third_frame>   Q  P  L  P  A  A  A  S  G  G  L  C  S  Y  R  I  *  E  A  L  S  V  C  Y  V  N  *  S  K  I  K  D  K  E  M  S  L  L  R  R  R  K  A  P  E  N  E  I  Q  P  D  V  E  P  K  L  D  A  E  E  D  D  K  K  S  R  K  K  N  V  K  S  G  K  K  K  K  W  S  C  I  D  N  C  C  W  F  V  G  C  I  C  C  V  W  W  I  L  L  F  L  Y  N  A  M  P  A  S  F  P  Q  Y  V  T  E  A  I  T  G  P  L  P  D  P  P  G  I  K  L  Q  K  E  G  L  K  A  K  H  P  V  V  F  I  P  G  I  V  T  C  G  L  E  L  W  E  G  H  Q  C  A  E  G  L  F  R  K  R  L  W  G  G  T  F  G  E  V  Y  K  R :   P  L  C  W  V  N  H  M  T  L  D  N  E  T  G  M  D  P  P  G  I  R  V  R  P  V  S  G  L  V  A  A  D  Y  F  A  P  G  Y  F  V  W  A  V  L  I  A  N  L  A  R  I  G  Y  E  E  K  T  M  Y  M  A  A  Y  D  W  R  L  A  F  Q  N  T  E  :  V  R  D  Q  T  L  S  R  I  K  S  N  I  E  L  M  V  A  T  S  G  K  K  A  V  I  V  P  H  S  M  G  V  V  Y  F  L  H  F  M  K  W  V  E  A  P  A  P  V  G  G  G  G  G  P  D  W  C  A  K  H  I  K  A  V  M  N  I  G  G  P  L  L  G  V  P  K  S  I  A  G  L  F  S  A  E  A  R  D  I  A  V  A  R :   A  L  A  P  G  V  L  D  T  D  M  F  H  L  Q  T  L  E  H  I  M  K  M  S  R  T  W  D  A  T  M  S  M  I  P  R  G  G  D  T  I  W  G  G  L  E  W  S  P  E  E  G  Y  S  P  C  R  S  K  S  R  D  D  A  A  Q  N  S  G  H  H  E  N  Q  T  T  D  S  K  A  K  Y  Y  S  Y  G  R  M  M  S  F  G  K  D  A  A  E  A  H  P  S  D  L  K  R  I  D  F  R  :  D  A  V  K  G  S  N  V  A  N  N  T  C  D  V  W  N  E  Y  Q  D  M  G  V  S  G  T  K  A  V  E  E  Y  K  V  Y  T  A  G  E  I  V  D  L  L  N  F  V  A  P  K  M  M  A  R  G  N  A  H  F  S  Y  G  I  A  D  D  L  D  D  P  K  Y  S  H  Y  K  Y  W  S  N  P  L  E  T  K :   L  P  N  A  P  D  M  E  I  Y  S  L  Y  G  V  G  I  E  T  E  R  A  Y  V  Y  K  R  I  P  T  A  G  C  N  I  P  F  Q  I  D  T  S  A  D  D  N  D  E  G  S  C  L  K  S  G  V  Y  T  V  D  G  D  E  T  V  P  A  L  S  A  G  F  M  C  A  K  G  W  R  G  K  T  R  F  N  P  S  G  I  K  T  Y  I  R  E  Y  F  H  A  P  P  A  N  L  L  E  G  R  G  T  Q  S  G  A  H  V  D  I  M  G  N  F  A  L  I  E  D  V  M  R  V  A  A  G  G  T  S  K  N  L  G  G  D  Q  V  Y  S  D  I  F  K  W  S  E  K  I  N  L  R  L  *  L  S  V  E  T  H  Q  F  H  C  V  N  I  P  A  *  H  V  I  Y  E  L  T  Y  P  F  H  W  M  P  F  K  Y  S  E  M  N  R  Y  F  S  R  Y  S  A  G  F  I  T  S  G  G  V  N  C  N  I  N  A  A  H  L  A  M  Q  Q  Q  R  I  I  G  V  *  *  G  L  S  L  M  L  Y  H  *  S  L  *  L  A  V  *  V  K  A  V  V  L  Q  V  F  I  L  Y  I  L  F  V  H  F  D  F  L  F  V  P  F  C  L  F  L  T  N  K  K  K  I  D  I  F  F  T  F   : *  K  K :   K  K  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82267" stop="81813"/>
                    <exon start="80446" stop="80224"/>
                    <exon start="80104" stop="79824"/>
                    <exon start="79264" stop="78937"/>
                    <exon start="77143" stop="76887"/>
                    <exon start="76240" stop="75757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2025</number_coding_nucleotides>
                  <number_encoded_amino_acids>675</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIKDKEMSLLRRRKAPENEIQPDVEPKLDAEEDDKKSRKKNVKSGKKKKWSCIDNCCWFVGCICCVWWILLFLYNAMPASFPQYVTEAITGPLPDPPGIKLQKEGLKAKHPVVFIPGIVTCGLELWEGHQCAEGLFRKRLWGGTFGEVYKRPLCWVNHMTLDNETGMDPPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLAFQNTEVRDQTLSRIKSNIELMVATSGKKAVIVPHSMGVVYFLHFMKWVEAPAPVGGGGGPDWCAKHIKAVMNIGGPLLGVPKSIAGLFSAEARDIAVARALAPGVLDTDMFHLQTLEHIMKMSRTWDATMSMIPRGGDTIWGGLEWSPEEGYSPCRSKSRDDAAQNSGHHENQTTDSKAKYYSYGRMMSFGKDAAEAHPSDLKRIDFRDAVKGSNVANNTCDVWNEYQDMGVSGTKAVEEYKVYTAGEIVDLLNFVAPKMMARGNAHFSYGIADDLDDPKYSHYKYWSNPLETKLPNAPDMEIYSLYGVGIETERAYVYKRIPTAGCNIPFQIDTSADDNDEGSCLKSGVYTVDGDETVPALSAGFMCAKGWRGKTRFNPSGIKTYIREYFHAPPANLLEGRGTQSGAHVDIMGNFALIEDVMRVAAGGTSKNLGGDQVYSDIFKWSEKINLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74567" e_stop="74446"/>
            <exon e_start="73700" e_stop="73693"/>
            <exon e_start="73016" e_stop="72829"/>
            <exon e_start="72759" e_stop="72613"/>
            <exon e_start="72484" e_stop="72416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.000" e_score="0.934"/>
          <exon-intron don_prob="0.609" acc_prob="0.905" e_score="0.625"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="74567" e_stop="74446" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74445" i_stop="73701" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="73700" e_stop="73693" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.609" acc_prob="0.905">
            <gDNA_intron_boundary i_start="73692" i_stop="73017" i_length="676"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73016" e_stop="72829" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="72828" i_stop="72760" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72759" e_stop="72613" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72612" i_stop="72485" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72484" e_stop="72416" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74567" stop="74446"/>
              <exon start="73700" stop="73693"/>
              <exon start="73016" stop="72829"/>
              <exon start="72759" stop="72613"/>
              <exon start="72484" stop="72416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACTATTGTGTTCATCTTTCAATTTTTCTTCGACACAGAGCATCGTCGTCTCCGATCAATCCCCTTTCTTGATCGCCACCTTCAATCTCTCTAGATATCTATATATATTTATCTATTC : TTCCATTT : TGTGTAGGGTGAAGCTGAGCTGAACTGTATCTTGCTTATATCTTTCGGGGACAATATGCAGCAAGCTGTTCAGTCAAGGTCCTTTGCCAATGGATTTGGCAGTCGCAAAGGCGAAAAAGAAATGGGGACAAGGTTGGAGAGTAAAATGCAGTCTACAAAAACGACTTCCAGCAAGTCGACAGCTGTAG : GTAAAGGGGGATCATACGAAAGTCCTTCACATGATCGACTAGTTTATTTTAGTACATGTCTTCTTGGACATCAAGTGGAAGTACAAACAACGGATGGATCTGTGTTTTCAGGGATATTTCATGCAACAAATGCTGACAAAGATTTTG : GTATTATTCTGAAACTGGCCCACTTGATAAAAGATGGTTCCCTGGAGAGTAAGAATACTCCTGAATCTC</gDNA_template>
            <first_frame> Q  K  L  L  C  S  S  F  N  F  S  S  T  Q  S  I  V  V  S  D  Q  S  P  F  L  I  A  T  F  N  L  S  R  Y  L  Y  I  F  I  Y  S :   S  I   : L  C  R  V  K  L  S  *  T  V  S  C  L  Y  L  S  G  T  I  C  S  K  L  F  S  Q  G  P  L  P  M  D  L  A  V  A  K  A  K  K  K  W  G  Q  G  W  R  V  K  C  S  L  Q  K  R  L  P  A  S  R  Q  L  *  :  V  K  G  D  H  T  K  V  L  H  M  I  D  *  F  I  L  V  H  V  F  L  D  I  K  W  K  Y  K  Q  R  M  D  L  C  F  Q  G  Y  F  M  Q  Q  M  L  T  K  I  L  :  V  L  F  *  N  W  P  T  *  *  K  M  V  P  W  R  V  R  I  L  L  N  L </first_frame>
            <second_frame>  K  N  Y  C  V  H  L  S  I  F  L  R  H  R  A  S  S  S  P  I  N  P  L  S  *  S  P  P  S  I  S  L  D  I  Y  I  Y  L  S  I   : L  P  F  :  C  V  G  *  S  *  A  E  L  Y  L  A  Y  I  F  R  G  Q  Y  A  A  S  C  S  V  K  V  L  C  Q  W  I  W  Q  S  Q  R  R  K  R  N  G  D  K  V  G  E  *  N  A  V  Y  K  N  D  F  Q  Q  V  D  S  C  R :   *  R  G  I  I  R  K  S  F  T  *  S  T  S  L  F  *  Y  M  S  S  W  T  S  S  G  S  T  N  N  G  W  I  C  V  F  R  D  I  S  C  N  K  C  *  Q  R  F  W :   Y  Y  S  E  T  G  P  L  D  K  R  W  F  P  G  E  *  E  Y  S  *  I   </second_frame>
            <third_frame>   K  T  I  V  F  I  F  Q  F  F  F  D  T  E  H  R  R  L  R  S  I  P  F  L  D  R  H  L  Q  S  L  *  I  S  I  Y  I  Y  L  F  :  F  H  F :   V  *  G  E  A  E  L  N  C  I  L  L  I  S  F  G  D  N  M  Q  Q  A  V  Q  S  R  S  F  A  N  G  F  G  S  R  K  G  E  K  E  M  G  T  R  L  E  S  K  M  Q  S  T  K  T  T  S  S  K  S  T  A  V   : G  K  G  G  S  Y  E  S  P  S  H  D  R  L  V  Y  F  S  T  C  L  L  G  H  Q  V  E  V  Q  T  T  D  G  S  V  F  S  G  I  F  H  A  T  N  A  D  K  D  F   : G  I  I  L  K  L  A  H  L  I  K  D  G  S  L  E  S  K  N  T  P  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73009" stop="72829"/>
                    <exon start="72759" stop="72613"/>
                    <exon start="72484" stop="72417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAELNCILLISFGDNMQQAVQSRSFANGFGSRKGEKEMGTRLESKMQSTKTTSSKSTAVGKGGSYESPSHDRLVYFSTCLLGHQVEVQTTDGSVFSGIFHATNADKDFGIILKLAHLIKDGSLESKNTPES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81305" e_stop="80487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="81305" e_stop="80487" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81305" stop="80487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTCAATTTCCTTAGCGGAAACTAGCTTCTAATTAGCCTCAATTTTTTCCGAACGTCATGGACGGTTATACTCAAGAACAATTACTTAGATATTCTACCTGTCTCAATTCGCAAGCGGACAATCCGTTTTAATCTGTTTTGGTTTACATGATCCTTTGCTTAATTGAAAAAGTTTCTCATACGAACTATTGCTCCACTATATTGTGAATTTTGAGCATCATATGACACATCTGTCAAAAAGAGGAAATGAAGAACATCAGGTTACTCCTTTTCAACAAAGAAGCCCACTAATTTCCATTTTTTCCCCTCATATACATTCTAGTCAAACAAGGCCACAAAATGAGGCAGAGCAAGTGCACTGAATAAATTTCACCTCTGGGAGGGATATACTGCTGAAATTGTTGTAAACAATCATCTGTCTTTGGGATAGAACAACTGTGGCATTGAATACACTGAAATTGTTCGGTCAAAGAAACTACTAGTAATATCTAGCTATAAGGTTTGAAAAATATTAATAGGGAATCCACCATAATTAATTTTGCCCATTGAATTTTGCCCTTCAGGAACTGTAAGCCTCACGGCTCACAGTGTAATACATCTTTCAGTTAGGCAGTGCGACTTTCTGATTTAGTAAGAGACTTCTGTTTAGGAATGAAAGGATCTCATATTTACTTTCTTTCTTGTATTTTTTCCACTTCAAAGTCATGGTTCTTAACCTAAAACCTTTTCCTTAAAAAAACAAAAAACAAAAATAGAAAACATCTTAACCTCTAGCTCACCCCGTAAGAACTAAATCTCTGTCGTCATTGCTAGCAT</gDNA_template>
            <first_frame> R  F  Q  F  P  *  R  K  L  A  S  N  *  P  Q  F  F  P  N  V  M  D  G  Y  T  Q  E  Q  L  L  R  Y  S  T  C  L  N  S  Q  A  D  N  P  F  *  S  V  L  V  Y  M  I  L  C  L  I  E  K  V  S  H  T  N  Y  C  S  T  I  L  *  I  L  S  I  I  *  H  I  C  Q  K  E  E  M  K  N  I  R  L  L  L  F  N  K  E  A  H  *  F  P  F  F  P  L  I  Y  I  L  V  K  Q  G  H  K  M  R  Q  S  K  C  T  E  *  I  S  P  L  G  G  I  Y  C  *  N  C  C  K  Q  S  S  V  F  G  I  E  Q  L  W  H  *  I  H  *  N  C  S  V  K  E  T  T  S  N  I  *  L  *  G  L  K  N  I  N  R  E  S  T  I  I  N  F  A  H  *  I  L  P  F  R  N  C  K  P  H  G  S  Q  C  N  T  S  F  S  *  A  V  R  L  S  D  L  V  R  D  F  C  L  G  M  K  G  S  H  I  Y  F  L  S  C  I  F  S  T  S  K  S  W  F  L  T  *  N  L  F  L  K  K  T  K  N  K  N  R  K  H  L  N  L  *  L  T  P  *  E  L  N  L  C  R  H  C  *  H </first_frame>
            <second_frame>  D  F  N  F  L  S  G  N  *  L  L  I  S  L  N  F  F  R  T  S  W  T  V  I  L  K  N  N  Y  L  D  I  L  P  V  S  I  R  K  R  T  I  R  F  N  L  F  W  F  T  *  S  F  A  *  L  K  K  F  L  I  R  T  I  A  P  L  Y  C  E  F  *  A  S  Y  D  T  S  V  K  K  R  K  *  R  T  S  G  Y  S  F  S  T  K  K  P  T  N  F  H  F  F  P  S  Y  T  F  *  S  N  K  A  T  K  *  G  R  A  S  A  L  N  K  F  H  L  W  E  G  Y  T  A  E  I  V  V  N  N  H  L  S  L  G  *  N  N  C  G  I  E  Y  T  E  I  V  R  S  K  K  L  L  V  I  S  S  Y  K  V  *  K  I  L  I  G  N  P  P  *  L  I  L  P  I  E  F  C  P  S  G  T  V  S  L  T  A  H  S  V  I  H  L  S  V  R  Q  C  D  F  L  I  *  *  E  T  S  V  *  E  *  K  D  L  I  F  T  F  F  L  V  F  F  P  L  Q  S  H  G  S  *  P  K  T  F  S  L  K  K  Q  K  T  K  I  E  N  I  L  T  S  S  S  P  R  K  N  *  I  S  V  V  I  A  S   </second_frame>
            <third_frame>   I  S  I  S  L  A  E  T  S  F  *  L  A  S  I  F  S  E  R  H  G  R  L  Y  S  R  T  I  T  *  I  F  Y  L  S  Q  F  A  S  G  Q  S  V  L  I  C  F  G  L  H  D  P  L  L  N  *  K  S  F  S  Y  E  L  L  L  H  Y  I  V  N  F  E  H  H  M  T  H  L  S  K  R  G  N  E  E  H  Q  V  T  P  F  Q  Q  R  S  P  L  I  S  I  F  S  P  H  I  H  S  S  Q  T  R  P  Q  N  E  A  E  Q  V  H  *  I  N  F  T  S  G  R  D  I  L  L  K  L  L  *  T  I  I  C  L  W  D  R  T  T  V  A  L  N  T  L  K  L  F  G  Q  R  N  Y  *  *  Y  L  A  I  R  F  E  K  Y  *  *  G  I  H  H  N  *  F  C  P  L  N  F  A  L  Q  E  L  *  A  S  R  L  T  V  *  Y  I  F  Q  L  G  S  A  T  F  *  F  S  K  R  L  L  F  R  N  E  R  I  S  Y  L  L  S  F  L  Y  F  F  H  F  K  V  M  V  L  N  L  K  P  F  P  *  K  N  K  K  Q  K  *  K  T  S  *  P  L  A  H  P  V  R  T  K  S  L  S  S  L  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81135" stop="80941"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFSYELLLHYIVNFEHHMTHLSKRGNEEHQVTPFQQRSPLISIFSPHIHSSQTRPQNEAEQVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91843" PGL_stop="92706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91843" e_stop="92706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91843" e_stop="92706" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91843" stop="92706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTTCAGGCGTGTCATCCAAATTACAGTCTCTAATTATGCTCTGTTTTCTCTCTCCCTAAAACCATCATCAGTTATCCATAACTCTTTGTCTCCATTGTCTCTTCTTCACATTCCTATTATTATTATTACTATTGTGTGTATGTGTATGATGATCAATTCCTCATTGACATCACTATTATGCCGCAGCTTTTGACTCATCTATAACAGACAATAAAGAGATTCCTTCAATCATTTTTCACCCCACTCCTTCACTTCCCCTGTTTTTCTTCCTGTTGCTCTGTTTTTTTTTCTTCTTCTATAAAAATACTCAGATATGGATAGGTATAGTTATCAACGGGAGAGGGAAATTTCTCATTCTTCAAACCCATCTTTCTCTTCTACACTTCTTGACGCAATTTACCGTTCAATTGATCAAGGAGAAGAAGAAGAAGAGATTGTTCTTTACAAAGAAACAATGCGTAAGAAACAGAGCAACAATATGGAGAGTTTTCAAAAAGCTTGTATGATTGAGAAATGGATGGAACATAAAGCAAGTGAAAAAGTTGTTGTTCGAAGAAAATCTATAGCTGATTTCGAAAGGAATCTGATGAACTCGAGCTCGAGTTCTTCAGATTCGAGCTGTGGGGGTGTGTTTTCTTCTTCAGAAACTGAATCCAGTTACAATAATGTAGTTATAAATTCTGCTGGGTCATCTTCTTCTTGTTATGGTCTAAACAGGCCTAAACCAATCAGAACCTCAATTTCCGGTTCAAACCCTGAAAAACACAGCAAAAATCAAGCTAAACAGCTCAACAACTATGGCGATTTCCGCCATAATCATCCTCCTATGGAAAGAGATTTCGCTCCCAAAACCAAAAGTG</gDNA_template>
            <first_frame> S  S  S  G  V  S  S  K  L  Q  S  L  I  M  L  C  F  L  S  P  *  N  H  H  Q  L  S  I  T  L  C  L  H  C  L  F  F  T  F  L  L  L  L  L  L  L  C  V  C  V  *  *  S  I  P  H  *  H  H  Y  Y  A  A  A  F  D  S  S  I  T  D  N  K  E  I  P  S  I  I  F  H  P  T  P  S  L  P  L  F  F  F  L  L  L  C  F  F  F  F  F  Y  K  N  T  Q  I  W  I  G  I  V  I  N  G  R  G  K  F  L  I  L  Q  T  H  L  S  L  L  H  F  L  T  Q  F  T  V  Q  L  I  K  E  K  K  K  K  R  L  F  F  T  K  K  Q  C  V  R  N  R  A  T  I  W  R  V  F  K  K  L  V  *  L  R  N  G  W  N  I  K  Q  V  K  K  L  L  F  E  E  N  L  *  L  I  S  K  G  I  *  *  T  R  A  R  V  L  Q  I  R  A  V  G  V  C  F  L  L  Q  K  L  N  P  V  T  I  M  *  L  *  I  L  L  G  H  L  L  L  V  M  V  *  T  G  L  N  Q  S  E  P  Q  F  P  V  Q  T  L  K  N  T  A  K  I  K  L  N  S  S  T  T  M  A  I  S  A  I  I  I  L  L  W  K  E  I  S  L  P  K  P  K  V </first_frame>
            <second_frame>  L  L  Q  A  C  H  P  N  Y  S  L  *  L  C  S  V  F  S  L  P  K  T  I  I  S  Y  P  *  L  F  V  S  I  V  S  S  S  H  S  Y  Y  Y  Y  Y  Y  C  V  Y  V  Y  D  D  Q  F  L  I  D  I  T  I  M  P  Q  L  L  T  H  L  *  Q  T  I  K  R  F  L  Q  S  F  F  T  P  L  L  H  F  P  C  F  S  S  C  C  S  V  F  F  S  S  S  I  K  I  L  R  Y  G  *  V  *  L  S  T  G  E  G  N  F  S  F  F  K  P  I  F  L  F  Y  T  S  *  R  N  L  P  F  N  *  S  R  R  R  R  R  R  D  C  S  L  Q  R  N  N  A  *  E  T  E  Q  Q  Y  G  E  F  S  K  S  L  Y  D  *  E  M  D  G  T  *  S  K  *  K  S  C  C  S  K  K  I  Y  S  *  F  R  K  E  S  D  E  L  E  L  E  F  F  R  F  E  L  W  G  C  V  F  F  F  R  N  *  I  Q  L  Q  *  C  S  Y  K  F  C  W  V  I  F  F  L  L  W  S  K  Q  A  *  T  N  Q  N  L  N  F  R  F  K  P  *  K  T  Q  Q  K  S  S  *  T  A  Q  Q  L  W  R  F  P  P  *  S  S  S  Y  G  K  R  F  R  S  Q  N  Q  K   </second_frame>
            <third_frame>   F  F  R  R  V  I  Q  I  T  V  S  N  Y  A  L  F  S  L  S  L  K  P  S  S  V  I  H  N  S  L  S  P  L  S  L  L  H  I  P  I  I  I  I  T  I  V  C  M  C  M  M  I  N  S  S  L  T  S  L  L  C  R  S  F  *  L  I  Y  N  R  Q  *  R  D  S  F  N  H  F  S  P  H  S  F  T  S  P  V  F  L  P  V  A  L  F  F  F  L  L  L  *  K  Y  S  D  M  D  R  Y  S  Y  Q  R  E  R  E  I  S  H  S  S  N  P  S  F  S  S  T  L  L  D  A  I  Y  R  S  I  D  Q  G  E  E  E  E  E  I  V  L  Y  K  E  T  M  R  K  K  Q  S  N  N  M  E  S  F  Q  K  A  C  M  I  E  K  W  M  E  H  K  A  S  E  K  V  V  V  R  R  K  S  I  A  D  F  E  R  N  L  M  N  S  S  S  S  S  S  D  S  S  C  G  G  V  F  S  S  S  E  T  E  S  S  Y  N  N  V  V  I  N  S  A  G  S  S  S  S  C  Y  G  L  N  R  P  K  P  I  R  T  S  I  S  G  S  N  P  E  K  H  S  K  N  Q  A  K  Q  L  N  N  Y  G  D  F  R  H  N  H  P  P  M  E  R  D  F  A  P  K  T  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92148" stop="92705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYSDMDRYSYQREREISHSSNPSFSSTLLDAIYRSIDQGEEEEEIVLYKETMRKKQSNNMESFQKACMIEKWMEHKASEKVVVRRKSIADFERNLMNSSSSSSDSSCGGVFSSSETESSYNNVVINSAGSSSSCYGLNRPKPIRTSISGSNPEKHSKNQAKQLNNYGDFRHNHPPMERDFAPKTKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91845" stop="92039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRRVIQITVSNYALFSLSLKPSSVIHNSLSPLSLLHIPIIIITIVCMCMMINSSLTSLLCRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="92803" PGL_stop="93436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92803" e_stop="93436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92803" e_stop="93436" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92803" stop="93436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTGAACTCACTATTCACTGCTGGAAATACAAAGAAACCCAAAGTTGTTTCTTCGAATTCTGCAAATGCATCTTCTACATGTTCTTCAGCTTCTTCATTCTCCAGGTCATGTTTAAGCAAAAGCACACCCAAATCCAGCAGCAACGGAACCAAACGTTCCGTTAGATTTTACCCAGTGAGTATCATCGTAGACGAAGATTGTCAGCCATGTGGACATAAAAATCTGTACGAAGAAAAAATACCCAAACCAGAGTCTCTAAAGAATAATATCAGAAACACCGTTAACGAAGAGCTCAAATTTCATTCAATGGAGAAAAATCGTCGAGTAGAAGAAGCTACTAAGGAGTTGCTGAGAAATTATCAGAGAAATTCAAATTCCCAAATCAAGAAAATGGAAATTTTCGACGATGAAGATGATGACGACGATGATGGTGCAAGTTGTGCTAGTTCAGATTTATTCGAACTTGATAATCTTTCTGCAATTGGAATAGATAGTAATAGGTATCTCGAAGAATTACCCGTTTACGAAACTACTCATCTCGATACTAATCGAGCCATTGCTAGTGGTTTGATTTTGTAATAAAAGTGTATTATTTATTGTTAACTAATGTAATTTTTGTAATTGGTTTG</gDNA_template>
            <first_frame> V  S  *  T  H  Y  S  L  L  E  I  Q  R  N  P  K  L  F  L  R  I  L  Q  M  H  L  L  H  V  L  Q  L  L  H  S  P  G  H  V  *  A  K  A  H  P  N  P  A  A  T  E  P  N  V  P  L  D  F  T  Q  *  V  S  S  *  T  K  I  V  S  H  V  D  I  K  I  C  T  K  K  K  Y  P  N  Q  S  L  *  R  I  I  S  E  T  P  L  T  K  S  S  N  F  I  Q  W  R  K  I  V  E  *  K  K  L  L  R  S  C  *  E  I  I  R  E  I  Q  I  P  K  S  R  K  W  K  F  S  T  M  K  M  M  T  T  M  M  V  Q  V  V  L  V  Q  I  Y  S  N  L  I  I  F  L  Q  L  E  *  I  V  I  G  I  S  K  N  Y  P  F  T  K  L  L  I  S  I  L  I  E  P  L  L  V  V  *  F  C  N  K  S  V  L  F  I  V  N  *  C  N  F  C  N  W  F  </first_frame>
            <second_frame>  F  L  E  L  T  I  H  C  W  K  Y  K  E  T  Q  S  C  F  F  E  F  C  K  C  I  F  Y  M  F  F  S  F  F  I  L  Q  V  M  F  K  Q  K  H  T  Q  I  Q  Q  Q  R  N  Q  T  F  R  *  I  L  P  S  E  Y  H  R  R  R  R  L  S  A  M  W  T  *  K  S  V  R  R  K  N  T  Q  T  R  V  S  K  E  *  Y  Q  K  H  R  *  R  R  A  Q  I  S  F  N  G  E  K  S  S  S  R  R  S  Y  *  G  V  A  E  K  L  S  E  K  F  K  F  P  N  Q  E  N  G  N  F  R  R  *  R  *  *  R  R  *  W  C  K  L  C  *  F  R  F  I  R  T  *  *  S  F  C  N  W  N  R  *  *  *  V  S  R  R  I  T  R  L  R  N  Y  S  S  R  Y  *  S  S  H  C  *  W  F  D  F  V  I  K  V  Y  Y  L  L  L  T  N  V  I  F  V  I  G  L </second_frame>
            <third_frame>   F  L  N  S  L  F  T  A  G  N  T  K  K  P  K  V  V  S  S  N  S  A  N  A  S  S  T  C  S  S  A  S  S  F  S  R  S  C  L  S  K  S  T  P  K  S  S  S  N  G  T  K  R  S  V  R  F  Y  P  V  S  I  I  V  D  E  D  C  Q  P  C  G  H  K  N  L  Y  E  E  K  I  P  K  P  E  S  L  K  N  N  I  R  N  T  V  N  E  E  L  K  F  H  S  M  E  K  N  R  R  V  E  E  A  T  K  E  L  L  R  N  Y  Q  R  N  S  N  S  Q  I  K  K  M  E  I  F  D  D  E  D  D  D  D  D  D  G  A  S  C  A  S  S  D  L  F  E  L  D  N  L  S  A  I  G  I  D  S  N  R  Y  L  E  E  L  P  V  Y  E  T  T  H  L  D  T  N  R  A  I  A  S  G  L  I  L  *  *  K  C  I  I  Y  C  *  L  M  *  F  L  *  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92805" stop="93386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNSLFTAGNTKKPKVVSSNSANASSTCSSASSFSRSCLSKSTPKSSSNGTKRSVRFYPVSIIVDEDCQPCGHKNLYEEKIPKPESLKNNIRNTVNEELKFHSMEKNRRVEEATKELLRNYQRNSNSQIKKMEIFDDEDDDDDDGASCASSDLFELDNLSAIGIDSNRYLEELPVYETTHLDTNRAIASGLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="110047" PGL_stop="108846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110047" e_stop="110017"/>
            <exon e_start="109800" e_stop="109630"/>
            <exon e_start="109267" e_stop="108846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="0.968"/>
          <exon-intron don_prob="0.998" acc_prob="0.748" e_score="0.994"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="110047" e_stop="110017" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110016" i_stop="109801" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="109800" e_stop="109630" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.748">
            <gDNA_intron_boundary i_start="109629" i_stop="109268" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="109267" e_stop="108846" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110047" stop="110017"/>
              <exon start="109800" stop="109630"/>
              <exon start="109267" stop="108846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTCACAGATCCAGTGGTGCTTTCTGCT : GATAGAGGTGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAAGTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCAAATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAG : GAGAAGGAAGATGGAGGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAAAAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCTGATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAATAGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATTTCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGGACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAAAGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGAT</gDNA_template>
            <first_frame> R  L  H  R  S  S  G  A  F  C   : *  *  R  W  L  Y  G  R  R  F  L  *  S  H  T  S  E  S  C  *  G  C  E  V  C  V  G  L  G  Y  *  C  K  A  L  P  P  A  L  W  P  C  S  N  A  *  G  *  R  C  G  A  D  C  *  E  K   : G  E  G  R  W  R  R  *  R  P  I  Q  I  T  F  *  C  S  F  S  Y  I  *  P  *  K  E  G  S  I  E  D  L  I  E  P  D  S  G  A  A  S  S  I  C  *  S  G  R  I  H  V  P  G  I  T  I  E  E  *  A  I  Q  *  E  *  L  E  F  F  Q  L  Y  E  V  K  P  I  Y  Q  *  W  L  E  D  F  S  V  V  F  Y  I  *  S  C  Y  N  P  R  V  S  T  I  S  G  D  M  L  F  S  S  R  *  Y  *  L  P  F  I  C  E  M  *  D  K  K  F  W  S  W  I  L  K  V  S  M  R  *  *  L  D </first_frame>
            <second_frame>  D  F  T  D  P  V  V  L  S  A  :  D  R  G  G  C  T  V  E  D  F  C  N  H  I  H  R  S  L  V  K  D  V  K  Y  V  L  V  W  G  T  S  A  R  H  S  P  Q  H  C  G  L  A  Q  M  L  E  D  E  D  V  V  Q  I  V  K  K  K  :  E  K  E  D  G  G  G  R  G  R  F  K  S  H  S  N  A  P  S  R  I  S  D  R  E  K  K  A  P  L  K  T  *  L  S  Q  I  V  A  L  L  V  L  Y  A  D  L  V  G  S  M  C  Q  V  L  L  L  K  N  E  L  Y  N  E  N  S  *  S  F  F  N  F  M  K  *  N  L  F  I  S  S  G  S  K  I  S  V  L  Y  S  I  F  D  H  V  T  T  L  E  *  V  Q  Y  L  G  T  C  F  F  P  P  D  N  I  N  C  R  S  F  V  K  C  E  I  K  S  F  G  L  G  S  *  K  C  Q  C  V  N  N  W   </second_frame>
            <third_frame>   T  S  Q  I  Q  W  C  F  L  L :   I  E  V  A  V  R  *  K  I  S  V  I  T  Y  I  G  V  L  L  R  M  *  S  M  C  W  F  G  V  L  V  Q  G  T  P  P  S  I  V  A  L  L  K  C  L  R  M  K  M  W  C  R  L  L  R  K  R :   R  R  K  M  E  E  V  E  A  D  S  N  H  I  L  M  L  L  L  V  Y  L  T  V  K  R  R  L  H  *  R  P  D  *  A  R  *  W  R  C  *  F  Y  M  L  I  W  *  D  P  C  A  R  Y  Y  Y  *  R  M  S  Y  T  M  R  I  A  R  V  F  S  T  L  *  S  E  T  Y  L  S  V  V  A  R  R  F  Q  C  C  I  L  Y  L  I  M  L  Q  P  *  S  K  Y  N  I  W  G  H  A  F  F  L  Q  I  I  L  T  A  V  H  L  *  N  V  R  *  K  V  L  V  L  D  P  E  S  V  N  A  L  I  I  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0142A05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110046" stop="110017"/>
                    <exon start="109800" stop="109630"/>
                    <exon start="109267" stop="109169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFTDPVVLSADRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHSPQHCGLAQMLEDEDVVQIVKKKEKEDGGGRGRFKSHSNAPSRISDREKKAPLKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 144688 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 5167 bytes was the average size of a spliced alignment
$ 25200 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1575 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 14:38:37
-->
