<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-04-02 23:08:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0198I15-VvgKI/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0198I15-VvgKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-VvgKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1448" ref_strand="+" ref_description="SGN-M1448 T0506 [cos_markers]">
      <seq>tggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaatggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-VvgKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="37930" stop="29396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37635" g_stop="37522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="156" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30005" g_stop="29696" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="466" r_length="310" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-M1448" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37635" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACA</genome_strand>
        <mrna_strand>TGGT--GCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="37635" PGL_stop="29696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37635" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="29696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.904"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.886"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="37635" e_stop="37522" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.886">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="30005" e_stop="29696" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37635" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACA</gDNA_template>
            <first_frame> W  F  A  E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T </first_frame>
            <second_frame>  G  L  Q  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T   </second_frame>
            <third_frame>   V  C  R  E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37635" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFAERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 2536 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2536 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-04-02 23:08:31
-->
