<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-04-02 20:07:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331503" ref_strand="+" ref_description="SGN-U331503        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aacggggttattggtcactcttctaaggttttccattcaaagagctttattttttatgctctttctgtaaactcggataaaagcttgaaggatagaatgtacaggtgatttgtggagtttggcaactcttgatgcacttggccctctccctctctgctttcacgcagagggtaaaaaggattcttcaccctgaagtaatgttgcaagcttggaggagaagagggttcagctctcgccgtttcagtaggagacatttgctatacttgaaaactttctaagtgaaaactgtaataactcgatgttcttgtgcattaacaattactctgttacgtttccccgaaattgtttacaaagttactttagaacttgcttacagttctcttcatgtcttgattatttcctgtatgagagtgaagtttggtgccnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="56872" stop="55849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56572" g_stop="56151" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="458"/>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U331503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56572" e_stop="56151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</genome_strand>
        <mrna_strand>AACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343974" ref_strand="+" ref_description="SGN-U343974        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, 11408 (cDNA not full-length) | chr1:29754006-29758166 REVERSE | Aliases: None(evalue: 1e-07, score=53.9) genbank/nr: unknown(evalue: 5e-13, score=78.2)">
      <seq>cacaatcccagccggatgctgaaattattggtgcagaggctgcaagagcggtaagcagagaaatgcctgtggaacttttacgtgctagtcttccacatacaaatgaccaccaaaagaagctgttgttgaatttcgctcagcggtctatgcctgttactggattcagttctcatggtggaagcagtggacatatagatcccgaatctgtaagctgttagctgagatggtaagatttcataatagctagtgcagttgtacatctgtaggtctcaaggttactttctggcttctctttgccagaacatgttctgcttcagcatcagtccaggagaacatagaaggctggagcaagagtatgcatatatgttaggggtctttttaaggcctaaggttcccctcttcgtcctaataactcttcccacctccaccctcacccccaccccacctcacccccatttctcccaccatccttccctgtttcttttcgttgtctcacttctttcttttgcttcattgaagggaaacatgggtttctttatccttttccttctatgtgatgggtgttatcttactttaccgtgtattatgtctgaaagaaacggggttattggtcactcttctaaggttttcattcaaagagctttattttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="57467" stop="56215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57167" g_stop="56515" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U343974" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57167" e_stop="56515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTTTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTT--CCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCTTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATG</genome_strand>
        <mrna_strand>CACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTCTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTTCCCCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCGTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTT-CATTCAAAGAGCTTTATTTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321923" ref_strand="+" ref_description="SGN-U321923        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:7874228-7878475 FORWARD | Aliases: MMP21.5(evalue: 4e-117, score=418) genbank/nr: gi|15228714|ref|NP_188866.1| expressed protein [Arabidopsis thaliana](evalue: 3e-115, score=418)">
      <seq>gagacttcatctttcagttcagccttctttagctctttttttcagcgctaagatcccaattgtataattccttcccttcaccatctcatctaggtaagtatggattggctcatttcagagattcacgatctaagccatcacacaaggttagacaaaatgtgcgcttttctaaacaaggctctgatgctgcttgccacaaaagtgaaagtaatgtgccacagttccgatctaagtatatgaccggtgatgaaatagagagcatcctgaaaatgcagcattctgcagcacatggcaatgatccatatgtagatgactactatcaccaggcccgccttgcaaagaaagcagctgagtctaggtcaaaatatcgcttttgtccaaataaggaacagtcttctcggtcacgtaatagtgcagaatcacagcctcatcttcatgttgatgctcaggggcgggtgtcattttcttccatccgcaggcctcgtccacttcttgaagttgatccaccaggctttgtttgcattgacagcagtgctgaccagaagatatctgagagacccttggaacaggagccaatgctggcagctagaattacaatagaagatggtttctatcttctcactgaggtagatgacattgacaggctccttcagtttagtcagccccaagactgtggtgctcagctcaagcggaagcgacagatcctgctggaaggcatggccgcctcacttcaactagttgatccgcttggtaaaggtggaagttctgtcgggcttactcctaaagatgacattgtatttctatggttggtgtctcttcccaagggccggaagctcatgtcaaggtatcttcagcttcttctgcctggcaatgagcttgtcagaatagtttgtatggcaattttccgccatttgaggtttttgtttggcggtcatccacctgatgttggagcagctgaaaccatcactgatcttgcaaaagtagtctctaaatgtgtcactctcatggaccttaattcactgagtgcttgtcttgctgctgttgtgtgttcctcagaacaaccacctcttcgccctcttggaagccctgctggagatggagcttctattattttaaatctgttcttgaaagggccactcgtctataaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58747" stop="56995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58447" g_stop="57295" g_length="1153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1153" r_length="1153" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U321923" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58447" e_stop="57295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTC-ATTTTTCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACAGAAGGTTAGACAAAATGTGCGTTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTTAAAATCTGTTCTTGAAGGGGCCACTCATCTATTAACTGAT</genome_strand>
        <mrna_strand>GAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTCTTTTTTTCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCTCATTTCAGAGATTCACGATCTAAGCCATCACACAAGGTTAGACAAAATGTGCGCTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACCGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAAGCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTT-AAATCTGTTCTTGAAAGGGCCACTCGTCTATAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332179" ref_strand="+" ref_description="SGN-U332179        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:8565618-8569810 REVERSE | Aliases: DL3535C, FCAALL.26(evalue: 1e-41, score=166) genbank/nr: gi|18414355|ref|NP_567452.1| expressed protein [Arabidopsis thaliana](evalue: 9e-40, score=166)">
      <seq>cttctccaccccacacaccaacacaaacacgtagactatgtaatacgctatgtctccttctccttttcgtctctttctttgaaaaccctagaaatctcaggtttttaaggaaaagaggactttgattcggtgcaattttatccttttctcctttttttgtcggtgtacatatggggttatatttcgcgggatccccaattttctaagaaaaaattggttgttagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctggctccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcgagatatagcggaggaagttgaattgggtggtttagaggacggacaagacaatagtgatctgggtgttggaggtggattaggtgatgacgagatacaggagtatcatttatttgagaaagacgagggatctgtggtgggctcattatcggacatagatgatctagcaacgacattttcaaagttgaacagaaatgtcactggaccaaggcatcctggtgttattggtgaccgtggatcaggctctttttcaagggaaagttcatctgcagctgattgggcgaaagaagcagactttcatgattggtttgatcagcatttatctgacactgaatgttaccaggaaagcaaaaaatggtcttcacagccacatatctctgcagtgcttgcagagtcaaaaccattgtatagaacatcctcataccccgagcaacccccacaacctcaacaacttcagcactactctagtgaaccccttttaccaccgaaatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64410" stop="58515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64110" g_stop="63815" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="463" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="520" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60582" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="596" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59051" g_stop="58815" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="833" r_length="237" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U332179" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64110" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60582"/>
          <exon e_start="59051" e_stop="58815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAAGTAAGTGCACATATTGATTAATTTTTTGTCCTTCCGTGATGTTTTTTCTTGAATATTTGATAAATCTCCTGGACTAGTTCCTGTATTGTCTGAAATATACCTTACTTGTTAACTTGCTTGAGGCTACTTTAAGATTGAAATGATGCCCCTTCATTGTTTTATCCGCCCATGCACATTTGTGCCACTAGTCCCAGATTTGTGAATATCTGTGATATCATATGTAGGCACCTTAAAATTCAGACAGTTGTGGCAATAATCCTTGATATTTTGATCTTTCAGACATCATATGAAGGGACTTGATCTCAGACCTTGGTAGGAATAAGTTATAGCCTTGTAGATGATCTGTTTCATCTTCGTGCTTGATTATTAAGGTCAGCAATGGTCCTCCCTTTGGGAGACTGACTATCTATATGTGCATGGTAGATGCCTTAATCAGTCTTGGCCTTTTTTTTTTTGGTTCTGAAAATCAGCGATCCTTTTTCCTTGCTACTACCATTAAAAAATGATTTGGCCCCGTGGTAGTAATACTTCAATAAAACTTCACCTTTCTGGATGATTTGTGATGGAAATCTATCCTGGCATGTGGCCTTGGGCTGCTAGAGTGGGGAGCTTGAGAAACTTCATGGAATGATTTTTTATTTTTGGATAATGAACTTCATGAAATGATTTATAAGCTTAGGACAACCCCCCACCCCTCTTAAAAAATAGTCATAAAAGGTTACATCACACAACACACAGAAATAAAACAGAAAGGTGGTTTTCTTATATGGTGACATGTAGAGTATTTTAAGTACATAGGTTTTAGCCATATCTATTTTGTTGTTTGTTGAAATGAGATCAACTTATCAGAAGTTTTTCCCTGTTGTAATTTTTCTGTTTTTAGCACGTGTTTTCCTTTTCGCATCTCCTGCCACTTGCTGGATCTGCCCCTATATTGGTTTGACGAGCATGTTTTCGTGTGGCACACTTTTGTACCCTCGTTCCATCTCGTGCCTCCTTTTAGGCACACTTAGTTTGTTGATTACTTACTTATGCGATATTCTGTATCTATGAGGTGAACACATTCTTTCAATAAAATGTCATCTGGATTGTTGGTTACCAGTTCTCAATCTCATGTTGCAGTATTATTACTATGTTACACAAGATGTGCTTTTAGAGATGTCTTTAGGGGAACAGACATGTTCACGCCAAAAAAGGGTCCATGTTACATGAATTATTAGTTTTAGGAGAGTAGAAGTTTAATGTCTAATTTTCATTGGAGTCCTCTCTGAATTAGTTCAATTTGACAAACATGAATGTGAGTTTCTTTTATTTGCCTTTATGTTGATATATTATGTTGGACTCAAATATTCTCCCTCCGTTCCATTTCACATGACATTTATCTTTTTTGGCTAGTAATGAAGATTTACATGTTTCTGTATTTGAAAATTCTTTGATCCTAACATTTTTATTTTGCTCTTAATGACATGCTCTAGTTAGGATGAAATGGCATGTTGAAAATAACTACTAATATATACTTGGTATTTGCAGGTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCATTTTACTACCGAAATCATCTT</genome_strand>
        <mrna_strand>CTTCTCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCTTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCCTTTTACCACCGAAATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341053" ref_strand="+" ref_description="SGN-U341053        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 1e-35, score=88.6)">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="73620" stop="72428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73320" g_stop="72729" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U341053" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73320" e_stop="72729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTTTGGGATATTTTCTCTAATTTTTTTTGGCAATTTCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATAGTGTCCAACACTGCTTTGTTACTATCATCTTGTCCCCGATAGAAGTATTCGTTTAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCTAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGTTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAACCCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAGAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAA--TTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-7YR29/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="81198" stop="79883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80898" g_stop="80183" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80898" e_stop="80183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCCAAAACACTTCAACTCTTCGAATATGGGTACTGGGATTACTTCTCTGAACTTCATAACGAACCTGCAGGACGGACCGTCATAGACACGACAGACCGTCAGAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTTTGCATTTTTTCGCTCAAAATCTCTGCATTCAGCTTTGGATAGATTTCCTGCAAAATGAAAAGAAACTTATATAAAAATTAGCACAAAAATACTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTTAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAATATCCATGTTTTATCCTTTGCAATCATTTGGCTTTCTATCCCGATTAATCTCATCAAATCTATGCATGCTATTACTATAAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCATCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAAAAGAAAATCCTACTTTTTCACACAATGATTTCAGTTTGAGTATAAGAATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="57167" PGL_stop="56151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57167" e_stop="56151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="57167" e_stop="56151" e_length="1017"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57167" stop="56515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56572" stop="56151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTTTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTTCCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCTTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</gDNA_template>
            <first_frame> H  N  P  S  R  M  L  K  L  L  V  Q  R  L  Q  E  R  *  A  E  K  C  L  W  N  F  Y  V  L  V  F  H  I  Q  M  T  T  K  R  S  C  C  *  I  S  L  S  G  L  C  L  L  L  D  S  V  L  M  V  E  A  V  D  I  *  I  P  N  L  *  A  V  S  *  D  G  K  I  S  *  *  L  V  Q  L  Y  I  C  R  S  Q  G  Y  F  L  A  S  F  C  Q  N  M  F  C  F  S  I  S  P  G  E  H  R  R  L  E  Q  E  Y  A  Y  M  L  G  V  F  L  R  P  K  V  P  L  R  P  N  N  S  S  H  L  H  P  H  P  H  P  T  S  P  P  F  L  P  P  S  F  P  V  S  F  L  C  L  T  S  F  F  C  F  I  E  G  K  H  G  F  L  Y  P  F  P  S  M  *  W  V  L  S  Y  F  T  V  Y  Y  V  *  K  K  R  G  Y  W  S  L  F  *  G  F  P  F  K  E  L  Y  F  L  C  S  F  C  K  L  G  *  K  L  E  G  *  N  V  Q  V  I  C  G  V  W  Q  L  L  M  H  L  A  L  S  L  S  A  F  T  Q  R  V  K  R  I  L  H  P  E  V  M  L  Q  A  W  R  R  R  G  F  S  S  R  R  F  S  R  R  H  L  L  Y  L  K  T  F  *  V  K  T  V  I  T  R  C  S  C  A  L  T  I  T  L  L  R  F  P  E  I  V  Y  K  V  T  L  E  L  A  Y  S  S  L  H  V  L  I  I  S  C  M  R  V  K  F  G </first_frame>
            <second_frame>  T  I  P  A  G  C  *  N  Y  W  C  R  G  C  K  S  G  K  Q  R  N  A  C  G  T  F  T  C  *  S  S  T  Y  K  *  P  P  K  E  A  V  V  E  F  R  S  A  V  Y  A  C  Y  W  I  Q  F  S  W  W  K  Q  W  T  Y  R  S  R  I  C  K  L  L  A  E  M  V  R  F  H  N  S  *  C  S  C  T  S  V  G  L  K  V  T  F  W  L  L  F  A  R  T  C  S  A  S  A  S  V  Q  E  N  I  E  G  W  S  K  S  M  H  I  C  *  G  S  F  *  G  L  R  F  L  F  V  L  I  T  L  P  T  S  T  L  T  P  T  P  P  H  P  H  F  S  H  H  P  S  L  F  L  F  F  V  S  L  L  S  F  A  S  L  K  G  N  M  G  F  F  I  L  F  L  L  C  D  G  C  Y  L  T  L  P  C  I  M  S  E  R  N  G  V  I  G  H  S  S  K  V  F  H  S  K  S  F  I  F  Y  A  L  S  V  N  S  D  K  S  L  K  D  R  M  Y  R  *  F  V  E  F  G  N  S  *  C  T  W  P  S  P  S  L  L  S  R  R  G  *  K  G  F  F  T  L  K  *  C  C  K  L  G  G  E  E  G  S  A  L  A  V  S  V  G  D  I  C  Y  T  *  K  L  S  K  *  K  L  *  *  L  D  V  L  V  H  *  Q  L  L  C  Y  V  S  P  K  L  F  T  K  L  L  *  N  L  L  T  V  L  F  M  S  *  L  F  P  V  *  E  *  S  L   </second_frame>
            <third_frame>   Q  S  Q  P  D  A  E  I  I  G  A  E  A  A  R  A  V  S  R  E  M  P  V  E  L  L  R  A  S  L  P  H  T  N  D  H  Q  K  K  L  L  L  N  F  A  Q  R  S  M  P  V  T  G  F  S  S  H  G  G  S  S  G  H  I  D  P  E  S  V  S  C  *  L  R  W  *  D  F  I  I  A  S  A  V  V  H  L  *  V  S  R  L  L  S  G  F  F  L  P  E  H  V  L  L  Q  H  Q  S  R  R  T  *  K  A  G  A  R  V  C  I  Y  V  R  G  L  F  K  A  *  G  S  S  S  S  *  *  L  F  P  P  P  P  S  P  P  P  H  L  T  P  I  S  P  T  I  L  P  C  F  F  S  L  S  H  F  F  L  L  L  H  *  R  E  T  W  V  S  L  S  F  S  F  Y  V  M  G  V  I  L  L  Y  R  V  L  C  L  K  E  T  G  L  L  V  T  L  L  R  F  S  I  Q  R  A  L  F  F  M  L  F  L  *  T  R  I  K  A  *  R  I  E  C  T  G  D  L  W  S  L  A  T  L  D  A  L  G  P  L  P  L  C  F  H  A  E  G  K  K  D  S  S  P  *  S  N  V  A  S  L  E  E  K  R  V  Q  L  S  P  F  Q  *  E  T  F  A  I  L  E  N  F  L  S  E  N  C  N  N  S  M  F  L  C  I  N  N  Y  S  V  T  F  P  R  N  C  L  Q  S  Y  F  R  T  C  L  Q  F  S  S  C  L  D  Y  F  L  Y  E  S  E  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56785" stop="56465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRFLFVLITLPTSTLTPTPPHPHFSHHPSLFLFFVSLLSFASLKGNMGFFILFLLCDGCYLTLPCIMSERNGVIGHSSKVFHSKSFIFYALSVNSDKSLKDRMYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56924" stop="56613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQLYICRSQGYFLASFCQNMFCFSISPGEHRRLEQEYAYMLGVFLRPKVPLRPNNSSHLHPHPHPTSPPFLPPSFPVSFLCLTSFFCFIEGKHGFLYPFPSM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57165" stop="56950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQPDAEIIGAEAARAVSREMPVELLRASLPHTNDHQKKLLLNFAQRSMPVTGFSSHGGSSGHIDPESVSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="58447" PGL_stop="57295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58447" e_stop="57295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="58447" e_stop="57295" e_length="1153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58447" stop="57295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTCATTTTTCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACAGAAGGTTAGACAAAATGTGCGTTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTTAAAATCTGTTCTTGAAGGGGCCACTCATCTATTAACTGAT</gDNA_template>
            <first_frame> E  T  S  S  F  S  S  A  F  F  S  S  F  F  S  A  K  I  P  I  V  *  F  L  P  F  T  I  S  S  R  *  V  W  I  G  R  F  Q  R  F  T  I  *  A  I  T  E  G  *  T  K  C  A  F  F  *  T  R  L  *  C  C  L  P  Q  K  *  K  *  C  A  T  V  P  I  *  V  Y  D  W  *  *  N  R  E  H  P  E  N  A  A  F  C  S  T  W  Q  *  S  I  C  R  *  L  L  S  P  G  P  P  C  K  E  S  S  *  V  *  V  K  I  S  L  L  S  K  *  G  T  V  F  S  V  T  *  *  C  R  I  T  A  S  S  S  C  *  C  S  G  A  G  V  I  F  F  H  P  Q  A  S  S  T  S  *  S  *  S  T  R  L  C  L  H  *  Q  Q  C  *  P  E  D  I  *  E  T  L  G  T  G  A  N  A  G  S  *  N  Y  N  R  R  W  F  L  S  S  H  *  G  R  *  H  *  Q  A  P  S  V  *  S  A  P  R  L  W  C  S  A  Q  A  E  A  T  D  P  A  G  R  H  G  R  L  T  S  T  S  *  S  A  W  *  R  W  K  F  C  R  A  Y  S  *  R  *  H  C  I  S  M  V  G  V  S  S  Q  G  P  E  S  H  V  K  V  S  S  A  S  S  A  W  Q  *  A  C  Q  N  S  L  Y  G  N  F  P  P  F  E  V  F  V  W  R  S  S  T  *  C  W  S  S  *  N  H  H  *  S  C  K  S  S  L  *  M  C  H  S  H  G  P  *  F  T  E  C  L  S  C  C  C  C  V  F  L  R  T  T  T  S  S  P  S  W  K  P  C  W  R  W  S  F  Y  Y  F  K  I  C  S  *  R  G  H  S  S  I  N  *  </first_frame>
            <second_frame>  R  L  H  L  S  V  Q  P  S  L  A  H  F  S  A  L  R  S  Q  L  Y  N  S  F  P  S  P  S  H  L  G  K  Y  G  L  A  D  F  R  D  S  R  S  K  P  S  Q  K  V  R  Q  N  V  R  F  S  K  Q  G  S  D  A  A  C  H  K  S  E  S  N  V  P  Q  F  R  S  K  Y  M  T  G  D  E  I  E  S  I  L  K  M  Q  H  S  A  A  H  G  N  D  P  Y  V  D  D  Y  Y  H  Q  A  R  L  A  K  K  A  A  E  S  R  S  K  Y  R  F  C  P  N  K  E  Q  S  S  R  S  R  N  S  A  E  S  Q  P  H  L  H  V  D  A  Q  G  R  V  S  F  S  S  I  R  R  P  R  P  L  L  E  V  D  P  P  G  F  V  C  I  D  S  S  A  D  Q  K  I  S  E  R  P  L  E  Q  E  P  M  L  A  A  R  I  T  I  E  D  G  F  Y  L  L  T  E  V  D  D  I  D  R  L  L  Q  F  S  Q  P  Q  D  C  G  A  Q  L  K  R  K  R  Q  I  L  L  E  G  M  A  A  S  L  Q  L  V  D  P  L  G  K  G  G  S  S  V  G  L  T  P  K  D  D  I  V  F  L  W  L  V  S  L  P  K  G  R  N  L  M  S  R  Y  L  Q  L  L  L  P  G  N  E  L  V  R  I  V  C  M  A  I  F  R  H  L  R  F  L  F  G  G  H  P  P  D  V  G  A  A  E  T  I  T  D  L  A  K  V  V  S  K  C  V  T  L  M  D  L  N  S  L  S  A  C  L  A  A  V  V  C  S  S  E  Q  P  P  L  R  P  L  G  S  P  A  G  D  G  A  S  I  I  L  K  S  V  L  E  G  A  T  H  L  L  T  D </second_frame>
            <third_frame>   D  F  I  F  Q  F  S  L  L  *  L  I  F  Q  R  *  D  P  N  C  I  I  P  S  L  H  H  L  I  *  V  S  M  D  W  Q  I  S  E  I  H  D  L  S  H  H  R  R  L  D  K  M  C  V  F  L  N  K  A  L  M  L  L  A  T  K  V  K  V  M  C  H  S  S  D  L  S  I  *  L  V  M  K  *  R  A  S  *  K  C  S  I  L  Q  H  M  A  M  I  H  M  *  M  T  T  I  T  R  P  A  L  Q  R  K  Q  L  S  L  G  Q  N  I  A  F  V  Q  I  R  N  S  L  L  G  H  V  I  V  Q  N  H  S  L  I  F  M  L  M  L  R  G  G  C  H  F  L  P  S  A  G  L  V  H  F  L  K  L  I  H  Q  A  L  F  A  L  T  A  V  L  T  R  R  Y  L  R  D  P  W  N  R  S  Q  C  W  Q  L  E  L  Q  *  K  M  V  S  I  F  S  L  R  *  M  T  L  T  G  S  F  S  L  V  S  P  K  T  V  V  L  S  S  S  G  S  D  R  S  C  W  K  A  W  P  P  H  F  N  *  L  I  R  L  V  K  V  E  V  L  S  G  L  L  L  K  M  T  L  Y  F  Y  G  W  C  L  F  P  R  A  G  I  S  C  Q  G  I  F  S  F  F  C  L  A  M  S  L  S  E  *  F  V  W  Q  F  S  A  I  *  G  F  C  L  A  V  I  H  L  M  L  E  Q  L  K  P  S  L  I  L  Q  K  *  S  L  N  V  S  L  S  W  T  L  I  H  *  V  L  V  L  L  L  L  C  V  P  Q  N  N  H  L  F  A  L  L  E  A  L  L  E  M  E  L  L  L  F  *  N  L  F  L  K  G  P  L  I  Y  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58446" stop="57295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLHLSVQPSLAHFSALRSQLYNSFPSPSHLGKYGLADFRDSRSKPSQKVRQNVRFSKQGSDAACHKSESNVPQFRSKYMTGDEIESILKMQHSAAHGNDPYVDDYYHQARLAKKAAESRSKYRFCPNKEQSSRSRNSAESQPHLHVDAQGRVSFSSIRRPRPLLEVDPPGFVCIDSSADQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLLQFSQPQDCGAQLKRKRQILLEGMAASLQLVDPLGKGGSSVGLTPKDDIVFLWLVSLPKGRNLMSRYLQLLLPGNELVRIVCMAIFRHLRFLFGGHPPDVGAAETITDLAKVVSKCVTLMDLNSLSACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLEGATHLLTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="64110" PGL_stop="58815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64110" e_stop="63815"/>
            <exon e_start="62399" e_stop="62233"/>
            <exon e_start="60981" e_stop="60925"/>
            <exon e_start="60657" e_stop="60582"/>
            <exon e_start="59051" e_stop="58815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.834" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="64110" e_stop="63815" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62399" e_stop="62233" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.834" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60981" e_stop="60925" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60657" e_stop="60582" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="59051" e_stop="58815" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60582"/>
              <exon start="59051" stop="58815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAG : ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG : GGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAG : TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAA : GTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCATTTTACTACCGAAATCATCTT</gDNA_template>
            <first_frame> L  P  H  P  T  H  Q  H  K  H  V  D  Y  V  I  R  Y  V  S  F  S  F  S  S  L  S  L  K  T  L  E  I  S  G  F  *  G  K  E  D  F  D  S  V  Q  F  Y  P  F  L  L  F  L  S  V  Y  I  W  G  Y  I  S  R  D  P  Q  F  S  K  K  K  L  V  V  R  S  W  C  Y  G  E  I  Q  *  Q  R  F  Q  R  L  D  *  L  L  W  L  H  L  R :   W  C  P  L  *  C  I  T  I  C  I  F  W  A  R  Y  S  G  G  S  *  I  G  W  F  R  G  R  T  R  Q  *  *  S  G  C  W  R  W  I  R  *  *  R  D  T  G  V  S  F  I  *  E  R  R   : G  I  C  G  G  L  I  I  G  H  R  *  S  S  N  D  I  F  K   : V  E  Q  K  C  H  W  T  K  A  S  W  C  Y  W  *  P  W  I  R  L  F  F  K  G  K :   F  I  C  S  *  L  G  E  R  S  R  L  S  *  L  V  *  S  A  F  I  *  H  *  M  L  P  G  K  Q  K  M  V  F  T  A  T  Y  L  C  S  A  C  R  V  K  T  I  V  *  N  I  L  I  P  R  A  T  P  T  T  S  T  T  S  A  L  L  *  *  T  H  F  T  T  E  I  I   </first_frame>
            <second_frame>  F  P  T  P  H  T  N  T  N  T  *  T  M  *  Y  A  M  S  P  S  P  F  R  L  F  L  *  K  P  *  K  S  Q  V  F  K  E  K  R  T  L  I  R  C  N  F  I  P  F  S  F  F  C  R  C  T  Y  G  V  I  F  R  G  I  P  N  F  L  R  K  N  W  L  L  E  V  G  A  M  E  R  S  N  S  R  D  F  K  D  L  T  S  S  S  G  S  I  S   : D  G  A  L  F  D  A  S  Q  Y  A  F  F  G  R  D  I  A  E  E  V  E  L  G  G  L  E  D  G  Q  D  N  S  D  L  G  V  G  G  G  L  G  D  D  E  I  Q  E  Y  H  L  F  E  K  D  E  :  G  S  V  V  G  S  L  S  D  I  D  D  L  A  T  T  F  S  K  :  L  N  R  N  V  T  G  P  R  H  P  G  V  I  G  D  R  G  S  G  S  F  S  R  E   : S  S  S  A  A  D  W  A  K  E  A  D  F  H  D  W  F  D  Q  H  L  S  D  T  E  C  Y  Q  E  S  K  K  W  S  S  Q  P  H  I  S  A  V  L  A  E  S  K  P  L  Y  R  T  S  S  Y  P  E  Q  P  P  Q  P  Q  Q  L  Q  H  Y  S  S  E  P  I  L  L  P  K  S  S  </second_frame>
            <third_frame>   S  P  P  H  T  P  T  Q  T  R  R  L  C  N  T  L  C  L  L  L  L  F  V  S  F  F  E  N  P  R  N  L  R  F  L  R  K  R  G  L  *  F  G  A  I  L  S  L  S  P  F  F  V  G  V  H  M  G  L  Y  F  A  G  S  P  I  F  *  E  K  I  G  C  *  K  L  V  L  W  R  D  P  I  A  E  I  S  K  T  *  L  A  P  L  A  P  S  Q  :  M  V  P  S  L  M  H  H  N  M  H  F  L  G  E  I  *  R  R  K  L  N  W  V  V  *  R  T  D  K  T  I  V  I  W  V  L  E  V  D  *  V  M  T  R  Y  R  S  I  I  Y  L  R  K  T  R :   D  L  W  W  A  H  Y  R  T  *  M  I  *  Q  R  H  F  Q  S :   *  T  E  M  S  L  D  Q  G  I  L  V  L  L  V  T  V  D  Q  A  L  F  Q  G  K  :  V  H  L  Q  L  I  G  R  K  K  Q  T  F  M  I  G  L  I  S  I  Y  L  T  L  N  V  T  R  K  A  K  N  G  L  H  S  H  I  S  L  Q  C  L  Q  S  Q  N  H  C  I  E  H  P  H  T  P  S  N  P  H  N  L  N  N  F  S  T  T  L  V  N  P  F  Y  Y  R  N  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="63815"/>
                    <exon start="62399" stop="62233"/>
                    <exon start="60981" stop="60925"/>
                    <exon start="60657" stop="60582"/>
                    <exon start="59051" stop="58816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSQVFKEKRTLIRCNFIPFSFFCRCTYGVIFRGIPNFLRKNWLLEVGAMERSNSRDFKDLTSSSGSISDGALFDASQYAFFGRDIAEEVELGGLEDGQDNSDLGVGGGLGDDEIQEYHLFEKDEGSVVGSLSDIDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSRESSSAADWAKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVLAESKPLYRTSSYPEQPPQPQQLQHYSSEPILLPKSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="73320" PGL_stop="72729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73320" e_stop="72729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="73320" e_stop="72729" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73320" stop="72729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTTTGGGATATTTTCTCTAATTTTTTTTGGCAATTTCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATAGTGTCCAACACTGCTTTGTTACTATCATCTTGTCCCCGATAGAAGTATTCGTTTAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCTAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGTTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAACCCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAGAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  T  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  F  W  D  I  F  S  N  F  F  W  Q  F  Q  H  K  D  I  S  H  K  I  H  L  L  *  C  P  T  L  L  C  Y  Y  H  L  V  P  D  R  S  I  R  L  V  T  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  L  C  L  C  G  L  V  S  W  R  P  D  S  S  V  L  R  K  H  P  L  V  G  S  K  *  R  L  S  C  M  G  V  Q  *  T  I  *  Q  P  L  P  S  V  R  E  E  T  L  *  T  L  L  H  L  N  P  N  Q  A  S  L  H  S  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  R  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  L  C  Y  F  G  I  F  S  L  I  F  F  G  N  F  S  I  R  T  F  P  I  R  S  T  C  Y  S  V  Q  H  C  F  V  T  I  I  L  S  P  I  E  V  F  V  *  *  L  I  I  Y  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  L  R  T  T  N  *  L  S  W  *  C  H  K  V  I  H  S  V  F  V  V  *  F  L  G  D  R  I  V  A  C  *  E  N  I  P  *  L  V  P  S  E  D  *  V  V  W  E  F  S  E  P  Y  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  I  Q  I  R  P  P  Y  T  A  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  E  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </second_frame>
            <third_frame>   Y  E  G  V  S  P  C  I  R  L  P  S  T  P  S  F  V  I  L  G  Y  F  L  *  F  F  L  A  I  S  A  *  G  H  F  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  C  P  R  *  K  Y  S  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  *  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  S  W  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  N  P  I  T  S  K  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  S  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72991" stop="72731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKKTSLSWFQVKIELYGSSVNHIAASPVSERGNTLNPITSKSKSGLPTQLLHTALTLAIWACGSSESSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="80898" PGL_stop="80183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80898" e_stop="80183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="80898" e_stop="80183" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80898" stop="80183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCCAAAACACTTCAACTCTTCGAATATGGGTACTGGGATTACTTCTCTGAACTTCATAACGAACCTGCAGGACGGACCGTCATAGACACGACAGACCGTCAGAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTTTGCATTTTTTCGCTCAAAATCTCTGCATTCAGCTTTGGATAGATTTCCTGCAAAATGAAAAGAAACTTATATAAAAATTAGCACAAAAATACTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTTAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAATATCCATGTTTTATCCTTTGCAATCATTTGGCTTTCTATCCCGATTAATCTCATCAAATCTATGCATGCTATTACTATAAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCATCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAAAAGAAAATCCTACTTTTTCACACAATGATTTCAGTTTGAGTATAAGAATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  S  T  L  R  I  W  V  L  G  L  L  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  R  P  S  E  A  S  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  Q  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  F  S  F  G  *  I  S  C  K  M  K  R  N  L  Y  K  N  *  H  K  N  T  F  G  H  T  K  L  K  E  K  V  L  I  I  L  *  N  H  G  I  S  T  P  L  T  *  I  C  C  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  N  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  K  E  N  P  T  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  F  E  Y  G  Y  W  D  Y  F  S  E  L  H  N  E  P  A  G  R  T  V  I  D  T  T  D  R  Q  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  H  H  K  H  N  G  P  S  *  A  P  *  V  V  S  F  A  F  F  R  S  K  S  L  H  S  A  L  D  R  F  P  A  K  *  K  E  T  Y  I  K  I  S  T  K  I  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  C  E  T  T  V  Y  Q  H  P  *  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  I  S  M  F  Y  P  L  Q  S  F  G  F  L  S  R  L  I  S  S  N  L  C  M  L  L  L  *  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  I  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  K  K  I  L  L  F  H  T  M  I  S  V  *  V  *  E  L  </second_frame>
            <third_frame>   R  V  F  V  P  K  H  F  N  S  S  N  M  G  T  G  I  T  S  L  N  F  I  T  N  L  Q  D  G  P  S  *  T  R  Q  T  V  R  S  F  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  I  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  C  I  Q  L  W  I  D  F  L  Q  N  E  K  K  L  I  *  K  L  A  Q  K  Y  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  N  L  N  L  L  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  F  Y  P  D  *  S  H  Q  I  Y  A  C  Y  Y  Y  K  A  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  S  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  R  K  S  Y  F  F  T  Q  *  F  Q  F  E  Y  K  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80897" stop="80682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRSKTLQLFEYGYWDYFSELHNEPAGRTVIDTTDRQKLRNPTLGQTSPSSFSSCTTLPPTDHHKHNGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80800" stop="80588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRQTVRSFVTPHLVRLPHLPSAAALRCHLRTITSTTDRHKLRRWSLLHFFAQNLCIQLWIDFLQNEKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 56 chains have been computed
$ 
$ memory statistics:
$ 12480 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2080 bytes was the average size of a spliced alignment
$ 10360 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2072 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-04-02 20:08:13
-->
