<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-04-02 20:14:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344942" ref_strand="+" ref_description="SGN-U344942        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | O-acetyltransferase-related, similar to O-acetyltransferase (Homo sapiens) GI:17016934 | chr5:18813153-18817321 REVERSE | Aliases: MPL12.14, MPL12_14(evalue: 1e-43, score=173) genbank/nr: gi|18422663|ref|NP_568662.1| expressed protein [Arabidopsis thaliana] gi|22531002|gb|AAM97005.1| putative protein [Arabidopsis thaliana](evalue: 9e-42, score=173)">
      <seq>caatccatcaaaacgactttcgtttttcaaccttcattgcttcagatctcttcttcttcaccatttctataactgctcatttcaaatcttcttcttatatataaattcatcattctcgtaaatatatacatattgatgatacgtttgattttgtatacatatatatattgttgaacaattgaattttgattcggatttggtgaggtattgtttctgttttgtagttgacgattttgaaaatgccggcggtttctggacctgtaacgccaggacaggtgtcatttttgcttggatatatacctgtcctcatcgcatggatatatgctgagtggttggagtacaagaagtggttgtttccctttaaagttcattcagataataatctggatgaacttgagatctcaacaaccaaggaagaagatcgagctgtcttactggaaggaggtctgtcaaaatctgcatctgtgaagttgtcaagttcatcggtaaaaacaaacataattaggtttttaacaatggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="14721" stop="18431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14988" g_stop="15243" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="275" r_length="253" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15244" i_stop="17011" i_length="1768">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17012" g_stop="17103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="367" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17104" i_stop="17892" i_length="789">
            <donor d_prob="0.640" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17893" g_stop="18030" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="505" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18031" i_stop="18111" i_length="81">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18112" g_stop="18131" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="525" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U344942" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14988" e_stop="15243"/>
          <exon e_start="17012" e_stop="17103"/>
          <exon e_start="17893" e_stop="18030"/>
          <exon e_start="18112" e_stop="18131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACCATTTCTATAACTGCTCATTTC-AAATCTTCTTCTTATATATAAATTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGATTTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAGGTGAGTTTTTTTGTATTAATTTGTTGTTGATACAGTATTTGAAATGATTTTTGTTGATGTATTGATGAAAATGTGAGTGTTTTCGAGTGTTTGAAGTGTAATTGGAGCAATTTATGAGTTAAAATGTGGAGAATTTGCACAAATGGGTGTGGTGTGTGGCGTAGTGATCAATGAAAGAGGTTTTAGAACTATGAGGTGTGAGGTTTAAATCTAGCAGAGACAAAAATACTAGATGGTTTCTTTTTATTTGTTTGAGTCTTGGTGGATGGAGTTATGTGATACGTGTTGTTGATGGGAGGTGAGAGGTATGGAATTAGTTGAGCTGTGTGAAAGCTGGCACGAACAGTACAATTGTCAGGAAGAAAATGCTGAATTTTGATATTAGATCAGTGAGATTATGAGGACTAAGGTTTAAACGTAGGTGAAAGCTAGTTGGGACACCACAGTTATCAAAAAAAAAAGAATTTTGATATTAGATCAGTGAGATTATGAGGTCTAAGGTTCAAGCCTAGCTGAGAAGAAAAATAGTAAGTGATTTCTTTCTATTTTTGTTCTAGCCTTAGTGGATGAGTTATCTGGTACATGTTGTTGATAGGAGGTGGTAGGTATGGGATTAGTTGAGGGGTGTGAAAGCTGGCCTGAACACCATAATTATCAAAAGGAAAATGCAGAATTTTGATGTTTCAGATTAGTGAGATGAGCTGATCTGAGCTGTGTCAAATTATAAAGATAATTAGACTTTGTTACGTTCTTGCTCGTGTTTATCACTGGATGACTTTGATAGTTTGATGTGAAGAACTTACTTGATTTGAAAGTACTAGCAATTCTATACAATTGCCATATGAATTTGTTGTTTTCATCACGTTGTTCATGTTTTGATTCTTACTAGTAGAGCTTGACTTCAGAACAGGCTAATTATCTCCTAATCTTACAACATAGGTAGGGTTTGAATTATGAGTGAAAAAAACTGAGTTAACTGCCTAGGCTCGATGGTCAACTACTGACGAAATACGAGTTCAGCTTGTGTTATGTAGATTCTCTGTGCTGTTCATTTCTTTGAAGGACAAAGATTTTCATCATAGATTTTGATTCAGTATGAATAACTTAGGTTTTCATTCATTTTGGTACCTGAAAACTCTCAGGTTTATCTATCTGTCTGATTTTAAGGGAAATTTGGGTGAGTAACTCACATAGGTAGTGAATAGATATATTTGAGGTGTGTGTGAATTGATCATGTTGTGCAGGATTTTACAATTGTTGGCTAGATATAAGTGTTTTAACAACTTTCCTCTGCTAGGAAAAGCGCTTAGCACTCCTTAAATGAATTCTTGACATCACATAGAGCAAAAGTTGAAGTAGGTGCTTGATGTCTGATTTATGACAGCATGTTTTCTTTACGGCTGACACAGTTACAATTATATAGCATTACTGAATCTCAGATCTCTCATTTGTGACATCCAATAAGATCATATCTCATTTGCAAATTTCAGAGTGCTTTTTTCCTTACATTTCCTTTTGAGTTTATTTGCCTTGTATTGGATTAAGGTTCGGGTGTCAGAAATAAGTTGCTATCTGTATATTGTGGAATTTGGTCATTCTGAAATTTTTCTTTCACAGTTTGTTTGGTCTAGCATGTACCTGCATTTTAAGGTTTCAATGCACCTGTACTGCTGCTACTATGTGGAACATCTTGTTTTGCTTTATTTGTTATGCTCTTGAGGAAATCATGCGTAGATATCTACTGAAGCCTACCCTTGTCATGTCTCAGGTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGTGTAAGTTAATCCATCCATTCACCATCCAAAAGAAAAAGGAAAAAACTGAAAACTCATATATCCTCATGCTGCAGCTAGATTTTCTGAGACATGCTAAGACAGTTGTAGCATTTGTGCGCTTCCTTTAAGTCGCTTGCCAAATCCTATCGAATGGCTTTATTTTAGAAAAAAAAAACAGAATTGGATTTAATGTGTGAACAAATCTCGTCTGGATAACACAAACAAATGTTATGTTATACATTTGCTACAAAATGTTGGTGGATAATATAGAGTCAACAATGTTGAAAATAGTGTGTGGGGAATATGAATGCTATATTATATTATATTTTAATAAGATATTTCATTAATGCTTGGGTCAAACTCGTCTGTACACAAGTACAACAACAACAACACACCAAGTGTAATCCCACAAGTGGGTCTGGGGAGGGTGGTGTGTGCGCAAACCCTGCCCCTACCTTGTGGAGGTAGCGAGACTGTTTCTAATAGACCCTCGACTCCAGTTTGTATACAAGTAATATACCAAAAAAATAGAAAGACTGACTGTGTAATTATCACTACTATTGTTCTTGTTAGTATTATTATTTTAAAAAGAGTGAACTTCTTGAAATTGAAGCATCTATTTTATGCCTTTGCAAAATTGAATTTTTAATTAAGGACAAAAAGTTTCTTTGGGCATCTTGATTTTAAGCACTGTAAAGATTGTTTTGTGTAGGCGATAATTTATCCAGGGATATTACTTAATCTGCTATAAGTGTTCTATTTGTATGGCTGACTTTTTCATGCCAACAGTCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAGGTGAGTGTGCTACATTCAATTTGCTGAATATTCTACTTTTAAGTTCGTGAATCTTTCCTTAGCATTTTCACATATTTGTAGGTTTTTAACAATGGAGGATG</genome_strand>
        <mrna_strand>TTTTTCAAC-CTTC-ATTGCTTCAGATCTCTTCTTCTTCACCATTTCTAT-AACTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGA-TTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAG.................................................................................GTTTTTAACAATGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330120" ref_strand="+" ref_description="SGN-U330120        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:At5g46340.1); similar to acetyltransferase-related [Arabidopsis thaliana] (TAIR:At1g29890.1); similar to OSJNBb0035I14.15 [Oryza sativa (japonica cultivar-group)] (GB:NP_917822.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_475947.1) | chr2:14525485-14530648 FORWARD | Aliases: None(evalue: 2e-95, score=344) genbank/nr: At2g34410(evalue: 1e-93, score=344)">
      <seq>tttatatctgggcttgaccgctatatatggattattggcatgatatatgcctattttcacccaaatgttgagaagttgatggagaaactggaggagtctgaaccaaagcggagacggacaattaagtcaaccatctgtgcagtaactttaattgttgggtacttgtggtttgaatacatctacaagcttgacaagacagcttacaataaactccacccctacacgtcatggattcctattactgtatacatatgcttgcgtaatttgactcaggagctgcggaatttctctctgacactctttgcgtggcttgggaaaattaccttagaaacctacatctcccagttccacatctggctgagatcaaatatgccaaatggacagcctaaatggctcctttcatttatcccgggctatcctatgcttaatttcatgctgactacagcaatttatgtactgctatcatgtaggctttttgaactaaccaacacactcaaatccgttttcgtacccacaagagacaatcagaagctgctccacaactttattgctggtgtcgcaatttctctgtgtttatacatcatttcctttatccttattcaaatccctcattaatgaaaccatttatctggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="20474" stop="22588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20774" g_stop="20839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20840" i_stop="20929" i_length="90">
            <donor d_prob="0.523" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20930" g_stop="21016" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="153" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21017" i_stop="21113" i_length="97">
            <donor d_prob="0.153" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21114" g_stop="21202" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="242" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21203" i_stop="21398" i_length="196">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21399" g_stop="21461" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="305" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21462" i_stop="21650" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21651" g_stop="21707" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21708" i_stop="21814" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21815" g_stop="21911" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="459" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21912" i_stop="21998" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21999" g_stop="22157" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="618" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22158" i_stop="22271" i_length="114">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22272" g_stop="22288" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="635" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U330120" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20774" e_stop="20839"/>
          <exon e_start="20930" e_stop="21016"/>
          <exon e_start="21114" e_stop="21202"/>
          <exon e_start="21399" e_stop="21461"/>
          <exon e_start="21651" e_stop="21707"/>
          <exon e_start="21815" e_stop="21911"/>
          <exon e_start="21999" e_stop="22157"/>
          <exon e_start="22272" e_stop="22288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAATGTAATTCCAAAGAACTTTGCATTTTCGTTGTTTGTCCAACTTTTCTTCCTCTTCCATGGTACTGAAGTTTGCAGTATCTTGTCCTTTTAGGTTGAGAAGTGGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATTGTGAGTTGCATTTAAGTTCATCAGATAGTAAAATCAGGTGTTGCAAATTATCTTTTTATTTTATGAAGTTTGTCATTTGGGAGACTGTATTCCTCAGGTTGGGTACTTGTGGTTTGAATACATCTACAAGCTGGACAAGACAGCTTACAACAAACTCCACCCCTACACGTCATGGATTCCTATTACGTATGTTTTTAGCTTTTCTAGTTCTCTTTTATCTGTTGATTTTACACGAAACTTATACTAATGTAAATTACTGCTGTTTGTTTGATTTGAAAACGAACAGTAAAAAGGTCCCTGCTTGCCTATAATGTACTTAAACCAAAGTTTGTCTCCTGAATGTCTTGTATTATTTTTCTCATTTGCTTTCTTTGCCTCACAGTGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGCGTAAGTTTCTAAACCATTTGTCTACCCGATCATGTCTTTCCTTTTTTGCTAATGCCTTTTAAATCATCCTTCACTTAGTTTTGATACTAACAGTTAAGCTCTACAGAATTAAAGATCTTTATTTGTTCTTCTTAAATAAGTTGAATCTACTTTGATTTCTCCTTGTCTAACTGTGGTCTGTTACTGTAGGTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAGGTATGTTCATTTCAATTTTCTTCTTAAGGCTGAGGTATGTTCGAGAACTTACTTTTTTTTTACTTACATGCTACGAGGACTTATTGCTTTCTGACTATTATCTGTAGATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTGGTAAGCATATATACTCTTTTCAATTTTGAGTCGTAAACCATTTTTTCTCCTGGTAGGTTCTATCTAAACATTTCTTGCTTATTGCAGCTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCGATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGAGTAAGTTTGTTATCCCATTTTCCTATTTGCTATGCACAACATCCTAAAATTCAGAAAAACTGCTAATCTTGTAGCACACATACTTACTTTGCGCGTTAATTATTTTTTTTGTAGAACCATTTATCTGGACT</genome_strand>
        <mrna_strand>TTTATATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAAT..........................................................................................GTTGAGAAGTTGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATT.................................................................................................GTTGGGTACTTGTGGTTTGAATACATCTACAAGCTTGACAAGACAGCTTACAATAAACTCCACCCCTACACGTCATGGATTCCTATTAC....................................................................................................................................................................................................TGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGC.............................................................................................................................................................................................GTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAG...........................................................................................................ATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTG.......................................................................................CTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCAATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGA..................................................................................................................AACCATTTATCTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332158" ref_strand="+" ref_description="SGN-U332158        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G18210.1 | Symbol: None | purine permease family protein, similar to purine permease (Arabidopsis thaliana) GI:7620007, contains Pfam profile PF03151: Domain of unknown function, DUF250 | chr4:10076107-10077759 FORWARD | Aliases: T9A21.60, T9A21_60 (evalue: 2e-27, score=119) genbank/nr: gi|30684325|ref|NP_193555.3| purine permease family [Arabidopsis thaliana](evalue: 1e-25, score=119)">
      <seq>ctcaaagtactcttaaaagcctttctcactcattcttctcactctacatatcaacatatattgtatgtttctttcccaattttggggaaaacaaaaaaagataactctatggaagaagttcaacaaaagctcttggatatcccaaatgaagaaatatgtgaggatgaaaattccaacattgaatcaagtggatcaactaattgttgttcctactttgccaagcataaatggtggtaccaagttgccatttttaccctttttactataattggagaagtagtaacatcactattggttaaaacatattttaccaaaggtggtaaaagtatatggttagtctccttagtgcaaaatgcagggttcccaattcttctccctttcctatacactgtgtcactcaaaaatcatagccaaattgaggtgatcaaaggaaatcaagaaccccatatttgcataatctttttagtttatgctgttctaggtgtgttacttggtggggttagtgttttcaactcgatcggtctaaagtaccttcaagtatcaacacattctctcactagtaccactcgactagggtttagtattatcttctctttattccacaatgcacataagttcaccccagttatagtaaactctctagttcttgtaacagctgcttcagtcattcttgtggttcataataacgagtctggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="26204" stop="30688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26648" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26649" i_stop="29834" i_length="3186">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29835" g_stop="30388" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="699" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U332158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26648"/>
          <exon e_start="29835" e_stop="30388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAAGTTAGTATCTATCTATTCTCTCCTCTTTTTTAAAAAAAAAAAAATTAGAGATATCAAATTCGAGTATGTTACGATTTCTTTTGTCAAGAATTGCTTGAGTTTTTTAGATTTAATTAGATGTATTTGATTCGAGTCTGATTATGTAAGAAAAAATTGTTAGTGTGTGATTGCTTGAGATTCCTTCACCTTTAATTAGATGCTTCCGATTTATGTTTTGATTATGTAAAAACATTTAACAAAAGAACAATTTTAAGTTCTTTCACTTTCAGTTAGATGTCTCATGTTCTAGCCCTCGTTATGAAATAATAGTTTGTTAGGGAGTAACCTGAGGTTCATTTATTTTTAATAAAGTTCTCAAATTAAATTGTTAGTTATGAAAAAAAATCATGTTAGTGAGTGTTTTTCTCCGTAAAAATACTTTAAATGATTTAAAATTAATTTAGTTAAATTTCAATACAAGTATCGAGAACCGCAGAAGGAAAAGGAAAAAAAAACACAAGATGGGTTTGTTTGTTGGAGATGGAATTTTCTTTTTGATTCAACTGCAGATATCATAGAGTTTTTGCCATTAAGTTAAGGGTCTGTTTGGGATGACTGGAAATATTCGAGGAGAATGTTTTTTCTTAAAAAAGAGATTTTTTTCAAAAAAAATTAATTTTTATATGTTTGGTAAGTAAATATGAATAGAAAATATTATTTTAAAAATATTTATATATAATATAGATAGACGAAATAAGAAGGAAGAGGGTAGCTGGGTAGGGTAGGGGTATGGGTTAGGGTAGGAGTATAGGCGGGTAGGGTATGGGATGGGATGGGAGCAAGATTTGTAGTGTAAAAGTTATTTTATTTTTAAAAGGAGAAAATCTCGAATATGTCATCAAATTTTCACAAACGAAGTTAACAATGATTTGGTCGTGTTATTAATTAAATCATTCTTTAAAAGGAAAAAGTTTCAAATACATCATTAAATTTTAAAAAAAAAGTCATCTATGTCATACGTTAAAAGTTTAAGCCATCTATACTATTTCAGTTAACAAATTGTGACATAAATGAGCGAGCTAAACTTTTCAAACAAATTACGTAGATGAATTTTTTTAAAACAAATGGATAATATATTTGAATCTTTTTTTCTGTTTTAGGATTGCATCTGCTCGTGATTGGGACAGGTTCAAATGTCATTTATAAAACTTCGGTTTATTAATTTTTTTTCTTCGTAATTATATATTTTTTCTTTTATGAAAATGATTTGACAAGTAATCCTCTTTGGCTGGTCGTTTTCCAAAATAATAATAAAAAAAAATTGCTTAATTATAGACTTGATTGCTCCATCAGAAAGTTGTTCAAATTTTTAATTCTCAAACATGTGTTGATATTTGTACGGTTAGAAGAATATATCATTAATGATAAAATTAAAAAAAATAATAAAGTAGAAAAATATTTAAACTATTAAAATAAAATCTTAAAACACTTAAATTAGAAATCTTAAATTTAAGTCACGAAAATAAATAAAAGAAATTGTAATAAGGAAAATTGATTTATGCAAATATTCATTTTTATGTTATAGAGCATTCATTTTATTGAATATTATATGTTGTAATCTCAATTGATCATGTAAGTATTTATTAAACACATAAATAAATTCAGAATTTTAAGGTTTATAAATTCAATTTGTTAAGGTTCATTAAATATGTTATATTTTTAAAGTTATTAGGTCACATCCCCTATTTATTATAGTTTAATCATTCTTACACATACATCTCAAAAATTTAGATTTAATTGAACTCATAATGGTATACAGTTATTGAAAAAAATAATATCTATTATTTGTAGATGTGATAATTGTTGTGCTTTTAAATATCTTTTCTTCTTTTGTCATATTATATATATTTATATTATAAGCTTTTTCCTAAAATGACATCTTTAGGTGGCAATGAAAATTGTGACCTTTACTATATGGTAGAGCCACATTTTGAGAAAGTAGCCAAAAAAAGAGACAATAATTGTAGGGTAATAAAAAAAGAGGCAATGATAATTCATTATGAGAAAATAACGAGTTATGATTTTTCGGAAATACTTTCTCCGTTCATTATTATTTATTATAGTTTTTATTTTTTAAGAACTTTGACTAACATTTAAGATGTACTTTTTCATTATATTGATCTGTAAAAAAAAATGCAATTTATAATGTATAATTTATGAATATTTAATTTTTTTATTTAAAATATTAAATTAATATAATTTAATTTAACTTTTAAAATTAGTCAAACTGTCTTTTTGAAAAACGCAATATGACAAATAAAAGTGGACGGATAAAATAGTTATTAGTTTTGTTTCTCAATGTAGTAGTAAAATATGCGTTAACTTTACTTTTTTCGGACTATACTTGTGAAATTTCTATGCATCAATTAATTTTATATATAAAAATCTCAAAAAAAAATATAATATACGTAGAAATTATCCTTATCTTTATCAGGCACAATAACTATTTTCTATTGATCCTCGATTTTCTTTATATATAAAGTAAAGGACAAGAATTAAAAGCAAATTATAGTGGGGTAGGTGTGTGTTGATTTGTTTATTAATCCAAACAATAAAATAAAGAAAACTCCAAAAGCTTATCACAAACCAATTCTTAAATTATATATTCCGTTGTAGCTTCTAATGTAATTTTTTTTAATTTGGGAATAAATGCCATTTTGTTAAAAATTAAGCTTGTTTTAGAAAAAAAAATAAAGCATGTTTAAGTTGGGACTTGGGAGTTCTTTTAGTTACATATAATATTGCTTATAATTAAACATGATCTAATTCGTGAAATATGATAAATAATTTATTATGGTATATGAATCGGTATATATGAGCTAAATCCTTAAGTGATCACTTCTGTCCCGTTACGTTTTGCTCTATTACTTGTATAGTAAGTTTTCAAAAGCTTACTTTATTACACTTGGCGCTATTATAAGTTTTTCTAGTCCATAAAGTAAGATTCAATTTTAATTTCCAACCATCATCTCATTGGCTTAGTTAGAATTATTCTCATCGTATGAGTTATGTACATGTCATTGTGAAGAATTTTTACAGTATCAGGTGACCTCATCGTTTATAGTTTTGTTAAACTGATGGAATATATAACTTAAACTCGTCTTCTTAGTGCCTTATTTATTAATTTAACTTTTATCTTTTTGACAGATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCGTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTTCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</genome_strand>
        <mrna_strand>CTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCCTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTCCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342244" ref_strand="+" ref_description="SGN-U342244        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted gene M02B7.4, Caenorhabditis elegans, PID:G1572781 | chr4:10080368-10081950 REVERSE | Aliases: T9A21.80, T9A21_80(evalue: 6e-28, score=72.8) genbank/nr: unknown(evalue: 9e-52, score=148)">
      <seq>gaattccgattgattttttcgccggccgatctcaaaagacagcaggatctctgtcttcagctgaggtgcagagcttcttgtaatggagaagggaggtttttgcatctccactatggcatcatcaaatatcgccattctattaactattggtgtcatcactgtacttgtgatacaaattatatacattattaataggagcagaaagccgcttcactccaaatcaccacgatccctcagttctcttattgatctgggttcaagtggtcacacaacagaaatgttaaacttattatatgtccttcaaacagagaggtttaagccgaggtattatattgctgctgctactgataatatgagtctccaaaaagcacacgtgtttgaagattccttgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="37847" stop="35642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37547" g_stop="37503" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="36379" i_length="1124">
            <donor d_prob="0.962" d_score="0.93"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36378" g_stop="36164" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="260" r_length="215" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36163" i_stop="36077" i_length="87">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36076" g_stop="35942" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="395" r_length="135" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U342244" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37547" e_stop="37503"/>
          <exon e_start="36378" e_stop="36164"/>
          <exon e_start="36076" e_stop="35942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCGATTGATTTTTTCGTCGGCCGATTTCAATAGACAGCAGGTTAGTGACAGATTTAGCTCTTTGTCTCGTCGAAGTAAATTTTTCTGTTTCATTGTTTGCAATTTTTTTTTGTGATTTTGTTTCTACTGTATGAAGATAAGTTTCAAATTTCATTTATATGAATTGGGTTTAGCAAAATTTTGATTTTCTTCCCACTGTATGAAGAAAAGTTTCCATTTTTCTGAATTGGGTTTGTAAAATTTTGGTTTTGTTCGTTTGAAATTTCATTTTTTTCTGAATTGGGTTTGCAAATATTTTCATTTAGTTGCGATGTGTTAAGTTGATAATGGCTTCAAACTATGAAGGTTGTGCTGATCTGCCTTTTTAGTGTTACTAAATACTGATTAGATTACTGAATATTTTTCTCGAAAAGAAATGACAAGTTGTGGTAGGAAATTGTAAGTGAAGTTATTAAGCTTCCCAAAAATACGAGCACAGGAATAGTTGTGATGGATTTAACAATTGGTATAAGCTAAAATAAAATGAAAAAAGAGTTGTAGACAGTGTTACTAATAGGAGATGTTGAAGAAGCCTTATAAGAGTATAGCAAAGGCAAATTATTGAAAAATATGTGAACTAAATTAATCTAGTATAGCATAATGGATAACGAGGATTCATATTGCCGATTCCTAGTGTCTTTTTTTAATTTTTATTTGAAGGAATAGCTTATTGATTGATGTGAAATGTTCACGACAAGTGTTCTAGATTTGGGATGAAAAGTTTGAAGTCATATACCAAATCCTTCTATCGATACGGTGGATTTTAATATTAAACCTTTCAAATAAATTGATCAGTAATAACCATAAAATCCTAATCTCTACTCCAACAGACATTTGAGTTAATGTTTATTATGTAATGTGACTTCGACAGTTATTATATCCTGTGACTAATAGTTGTGTAGTCTATCAAGGCAGTTAACCATAGAGACTGTTCTGCATTATGCATAGCCATTCAAGCTTCTCATTTAGTTTTTGTAAGCAAAACATATCTAATCAATGCGCATCTTATATAATCGGTATTTGAATTTCCATTTGAAGCATCCCTCTGGTTAATTAAATTAATACCATTTACCTTTATAAGCTTGTGCTTTGGAATTTATGCTGATTGATTGAAATGTAATCCTGGATCTCTGTCTTCAGCTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGGGATTTTTGCATCTCCACTATGGCATCATCAAATATCGCAGTTCTATTAGCTATTGGTGTCATCACTTTACTTGTGATACGAATTATTTATGTTATTAATAGGAGAAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTACACTTATTGTTCTGGGTTCAGGTCTAGTTTTATGTCTGATAGTATTTCTTCTGTTTTACTGCCTTTTCCTTATACTTGTTCTAAATCTTAAGTTCAACTATGATGTAGGTGGTCACACAGCAGAAATGTTAAACTTATTATATGTCCTCCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAGGATTCCTTGCTCG</genome_strand>
        <mrna_strand>GAATTCCGATTGATTTTTTCGCCGGCCGATCTCAAAAGACAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCTGTCTTCAGCTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGAGGTTTTTGCATCTCCACTATGGCATCATCAAATATCGCCATTCTATTAACTATTGGTGTCATCACTGTACTTGTGATACAAATTATATACATTATTAATAGGAGCAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTTCTCTTATTGATCTGGGTTCAA.......................................................................................GTGGTCACACAACAGAAATGTTAAACTTATTATATGTCCTTCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAAGATTCCTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336106" ref_strand="+" ref_description="SGN-U336106        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504: Chlorophyll A-B binding protein | chr3:10257184-10258248 FORWARD | Aliases: MGF10.10(evalue: 2e-49, score=192) genbank/nr: gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C(evalue: 2e-53, score=212)">
      <seq>tttttgtacattcaagagtttctcattctacttctataatggctacttctaccatggctctttcttcctctacatttgccggaaaggcggttaaactctccccatcttcttctgaaatcaccggaaatgggagagtcaccatgaggaaaactgctaccaaggccaagccagcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctctggggaatccccaagctacttgaccggtgagtttcctggtgattacggatgggacactgctggactttcagctgaccctgaaacattcgcttaaaacccgggagtggaaggtttttcatggaaaatggcccagcctggggcctctgggatgtgatttccccaaccttttggcccgtattggggttaagtccggggaacctgtttggttaagggttggatcacaaattttcagcgagggtggacttgactacttgggaaacccaagcttggtccatgcacaaagcattttggctatctgggcttgccaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="41736" stop="40586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41436" g_stop="40886" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U336106" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41436" e_stop="40886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGC-TAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>TTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTTAAAACCCGGGAGTGGAAGGTTTTTCATGGAAAATGGCCCAGCCTGGGGCCTCTGGGATGTGATTTCCCCAACCTTTTGGCCCGTATTGGGGTTAAGTCCGGGGAACCTGTTTGGTTAAGGGTTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336093" ref_strand="+" ref_description="SGN-U336093        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 3e-108, score=388) genbank/nr: gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C(evalue: 2e-115, score=418)">
      <seq>taagagtttataatggctgcttctactatggctctttcctcctctactttcgccggtaaggcggtgaaactctcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagcctgcctcctctggtagcccatggtacggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacacggctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgntcaagctattgtcactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43750" stop="42428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43450" g_stop="42901" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42900" i_stop="42832" i_length="69">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42831" g_stop="42728" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="654" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U336093" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43450" e_stop="42901"/>
          <exon e_start="42831" e_stop="42728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGA</genome_strand>
        <mrna_strand>TAAGAGTTTATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACGGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG.....................................................................AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGNTCAAGCTATTGTCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313215" ref_strand="+" ref_description="SGN-U313215        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 8e-71, score=262) genbank/nr: chlorophyll(evalue: 2e-75, score=283)">
      <seq>aaacacaattcatttctttttattaatattaaatcatggctgcttctactatggctctttcttcctctgctttcgccggtaaggcggtaaaactctcaccatcttcttctgaaatcagtggaaatggtagaatcaccatgaggaagaccgttgccaagcctaagcctgcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattttctggtgaatcaccaagctatttgactggtgagttcccaggtgactacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggagctcttggttgtgttttccctgagcttttggcccgtaacggtgttaagtttggtgaagctgtatggttcaaggctggatcacaaattttcagcgagggtggacttgactacttgggaaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43778" stop="42686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43444" g_stop="42986" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="488" r_length="459" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U313215" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43444" e_stop="42986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCT</genome_strand>
        <mrna_strand>TAAATCATGGCTGCTTCTACTATGGCTCTTTCTTCCTCTGCTTTCGCCGGTAAGGCGGTAAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGTAGAATCACCATGAGGAAGACCGTTGCCAAGCCTAAGCCTGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTTTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGAGCTCTTGGTTGTGTTTTCCCTGAGCTTTTGGCCCGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313218" ref_strand="+" ref_description="SGN-U313218        Tomato 200607 #1 [291 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 6e-134, score=474) genbank/nr: gi|115825|sp|P07369|CB2G_LYCES Chlorophyll A-B binding protein 3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP) gi|72734|pir||CDTO3C chlorophyll a/b-binding protein 3C precursor - tomato gi|224932|prf||1204205G protein 3C,chlorophyll binding(evalue: 7e-145, score=516)">
      <seq>attgataacaacaaccatcaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgttcaagctattgtcactggaaagggtccattggagaatcttgccgaccacattgctgacccagttaacaacaacgcctgggcctttgccacaaactttgttcccggaaagtgaagtttttgagagaaaaaaatgttacgtctagtatcttattgtttgatgacaaccatgtaaacctagcaattgtagattactagagattgattatatatgaagttttttgctaaaaaaaaaaaaaaaaaaaaattgttgattaaatctaaatcattaatattaatatatagtaacaagtggaaaaatgggacaagagaaaatgaaagattaatttctttatgtcatttataatgacttaacagttaaataatgtatccgtgataaatttcgcaattatatatggttatagtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45079" stop="62424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45375" g_stop="46233" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46234" i_stop="46648" i_length="415">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46649" g_stop="46698" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="904" r_length="45" r_score="0.580"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46699" i_stop="48250" i_length="1552">
            <donor d_prob="0.878" d_score="0.58"/>
            <acceptor a_prob="0.179" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48251" g_stop="48257" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="910" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48258" i_stop="49499" i_length="1242">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.517" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49500" g_stop="49539" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="944" r_length="34" r_score="0.600"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49540" i_stop="52283" i_length="2744">
            <donor d_prob="0.599" d_score="0.60"/>
            <acceptor a_prob="0.087" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52284" g_stop="52292" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="952" r_length="8" r_score="0.778"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52293" i_stop="59138" i_length="6846">
            <donor d_prob="0.751" d_score="0.00"/>
            <acceptor a_prob="0.477" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59139" g_stop="59193" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1002" r_length="50" r_score="0.655"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59194" i_stop="59563" i_length="370">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59564" g_stop="59624" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1003" r_stop="1058" r_length="56" r_score="0.689"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59625" i_stop="60790" i_length="1166">
            <donor d_prob="0.900" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60791" g_stop="60813" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1079" r_length="21" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U313218" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>1104</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45375" e_stop="46233"/>
          <exon e_start="46649" e_stop="46698"/>
          <exon e_start="48251" e_stop="48257"/>
          <exon e_start="49500" e_stop="49539"/>
          <exon e_start="52284" e_stop="52292"/>
          <exon e_start="59139" e_stop="59193"/>
          <exon e_start="59564" e_stop="59624"/>
          <exon e_start="60791" e_stop="60813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAAGCAATTTTTAATATCATATTTACAATTTTTCATCTTAAAAGTTATATACATCGATATAAGAACGCATCATAAGTAGAATTCAACCTATGATGACAGGTATATCAAGTTGTTTTTCCCTTAAAAAACTTATAACTTCTAACGAGACGAATTCAAAATTTAAAATGTTCGATCAGTAAGTTCTTTAACACTAATACTCATGGTCCATATAAATTTTAAAGATATATCTACTTTGTAATCAGTTCAGATAAACCTGTAGCGAAGAAGTGAAAGACGTTACTGTTATTAACAAATTTGGTAAGTAGTATATGCACAAAATTAGTATAACCACATTGAACTAACCAATATTTCAAAACATTTATGTTATGGAGACTAGACATGAAAGTAGAAAAGTGGGATTATAATGCAATAGATTACTATTGGGAAAAAAACACTAGCAACTATAGATTAAAAACGACGAAAAGGGGGGTTAACCGTGTTAAACAAGAGCTAAAAGAAAAAACACAGACGAGACGACTAGAGCACTGTGTTAACTCAGACATTACCTACGTTACATTTAAATCTGAGATAAACACGTAAAGTACAGAGTCATGGCACAGGGCAGCACCCAGTCAAGTTTCTTCAGGGATCGTGAACGAGGGTTATTTCAACAGAGAGAGCTGGAAAGGCCACTTTCACACTCATTACAAGACCCCAAAAAAAGAAAGAACAGAAAAACAAGGGAGGCAGTAAGATTTAGTAGCCGTTTTGCCATAACTGTTGTTGAGACTGCTTTGGCTGGCCTTGTGAACCAGACAACGATCCATCTCGAAGGTTTTCTTGCTGTTGTTGGTCCAACGAGATACCAGCCTGAGAATTGTAGAAATGTGGGTAGCCCCCCAAAGATCCATAGCTCTGTGATGGCTGTTGGCCTTGCCTAAATCCGCCCGTTTGCTGATTCTGTCCCTGAAAGCCATAATACGTGTTGGCGGGAACAGTTGGCATTGTTCTTGAACCATGTCCATGAAGCCACAAAGCTGAGTTCTCATTCTGAAAGAGGACGGAAACAGGAGTGTCAAATAAAGCAAAGGACATGCCAGATAAAGTCAATGACAAATTGAAATTACAGAGCATTTCAGACATGCTGCGCCAACCACCAAGGTGGACATTGACAAATGCAATTGACCAAACAAACACAGAAGCTAGAGGCGTCAAATGGGGGGAATAGACTAAAAAGTGGATCATGACCTGCCCAAAAACCACTTGCGCTGAAATGGAATTAAAAGTGAATGGTTTTATATAACATAACCAACAAAAAAATGTATTTTTGAAAATATTATGACAGTTTCTATCGGTCAATTTCAATTCGTAGATTGGCTGAAACGGGTGGGACTAAAATGGGCTGAACTAATAAATGTAGAACGGGTTGAGGGGATCATGTTCACTTGGGCTGATTTTGCTACCCCTGACGCCCTGACAGTAGCTATTCAAACGGTCATTTCACATTATGATGAGTCATGACAAGCAATTTCTTGGAGAGAGAGTTCAGTAGGAATATGTGTGCTCACAAAAAGAAAAGGATACCTGCTGAAGAGACATCAAATGATTGGTATCCTTGAACTGAGCACTTAATACATCATCGTAACTTAAGTTAGTACCAGATGGAGCAGCAGGGGGGTTGATTGGGAAGTTCCCGGGGATACTTGTTGTATTTCCAAAAGCACCATATCCAGAAGGAATAGTGGCAGATTGAGGCAAGCTGCTGGCAGAAACGGTATTCTTATATTGGGGGAGCATTGCTGCAAGCGACTGATGGTAACTGCTATTACCAGGATATGCTTGTTGGAATGCAGATGGAATATATGAATAGTTCTGAGGCACAAAGGGATAACTAATCATGTTGCCATATGGGGCAATAGGAACAGCTTGTTGAGAATATTGGTGTACAGTTAGGTGTTGTGGTACGCCAGGTCCTGTGGCGACACTATTTCCAGAAAGCATCTGCTGAGTAGGCTGTGCTGATGAAAAGCCAACTGTCTTCATAGCCTGCAGGAAACACTAACACTGTCAATTATTACAACGACAACATACTCAATGCAATCCCACAAGTGGGGTCTGGGAAGGATAGAGGGTACGCAGACCTTACCCCTATCTTGTACAACTAGTAGAGATAGAGAGGTTGTTTCCGATAGACCCTCAGCTTAAACAAGGCATTCCAAACAGTTGGAAAAGGGGGAGATACAGATATGAGCACTTGAGTGCATTACACAAAAGATAGAAGAGGACACAGTCAACCATTACACACCACAAAAACAAGAGAAGGGAGAAAAATATCGCACCAACTTTGAAAGGGGAAAAATAGGATGTATAATGCTTTCCCCGTCTCAAGTCACCAATTCATATTATACAGAGTTGTGATAGACAACACACTGGCCAGAATATGAATCACCGATCAAACTAAAGCAACACATCACTTAGAGGAACCACATTTAAGATGTATCTGAACTATGATCAATATTTGTAGAAAATACTGAACCTTTTAAATGCTTAAACCTATAACTTTATTTTTTTGGGACGATCAGAACAATCCAAACGAAAAGCTTCCTTCAGAAAACAAAAGTGTACTTCTGAGAACCTGACTTAATACTTGCGAAAATGTTAAAAACCAAATCCAACCTCGTTTTACTATATAACACTGCACCTCTCTCCTCCACCAGTTATACTTGATTGCCCCGAATTTAGCATTCAAAATACTCTAAGAAAAGCCATGACCAATAACTCTTTCAGGGAGAGTTGGAAAGAGGGTGTTTGTGCGGATACGAATTTGTTCAAGAATGGATATTGACATGCATTAGAGGGGAATTTCAAAATACAGAATGTATATTGGGACTTCAAGAGATAATAAATCCCAATAATTCATTTCATTACTTCATTTATTTTATTATGTTAATTTTATAACTTCATAAATATTCCGTCCTTTTGTTGATACATTCTAGTTAATTGAAAAAATACGGTTGGGGGGGGGGGGGGGGGATGGGGGCTCAAAGCCTCAAGACTCATAACTTTACTAATGTTAAACAGTAGTCATCTTCTCGTTCATGAACAATTTACTTCATCAGGAGAAAAACAATACAACCAGCTTTTCGCTAGACCCTTACTGTTCAAACTCATCTTACCTGCCTGGAAATCAAGCATAATCACTTGTATATTTTTACTAAAAATCAAAATGGTCAATTTTTCCCTCAATTCATTATAAAACAGTCCTAGTTAAGGTCAATATGTCTGCGGGTAAAGGTACCAACACTACAGCTGAGGGTAGGATAGAAAGATATCTGCAATATTTGATTAGATTCCAGCAGAAACATTACCTCAGGCATAGCTGAACCACTGATTGATGAAATTGAGTTGCCATATTTTGTGGGCATTGCTTGTGTTGTAGAAAAAGGAGAATATGAAAGCTCAGACTCTCGACCAGGATGCACGTTAGCAGTCAACATGTCACTCTGCAAAGAATTTGTGTAGACCTACTCGAACAAAAAATAGCAAGAGAGCAAATTAGGTAAAACATGGATATTATGCTCTAGCAAATAATGGTAACTCGGATCATGTTGGCATGCTACTGTAGTTTTTTAATAAAAAAAATTGACAAGTGACATGCTTCTTTATTGAAGTTGTCTCCATGTGACCTATAGGTCACACGGGTTTGAGAAGTGGAAGCAACCACTAATGCTTGCATTAGGGTAGGTTGTCTACATCACACGCATTGAGAAGCGTCCCTTCCAACGTGTGATGTTTTGTACACCGGGCTGCCCTTCTTTTGTCATGCTTCTTTGCTTTTGGGCATTACATATGTTTAGCTAATTAGAAGTTTATTATTGGATGAAATATTATTCAACATAGAGCACCAAGCAGGCACTTACTTTTCTATACAAAGTTCGCAAATAGTTTAGCTACGCTGGACTCATAATAAATGAGGGTCAAGTGAATTAACACTATTATATGTTTAGAATGTTTCTAGGCTGTAACATAGTTTTTTAAAATGGAAAACTAGATATGTTTCCAATATATGAAAAAATACCATGTTATTATAAGGAATCCAGTAATTAGGAAAATTTCCATAAGCTATTTCAAGTAGCCTACACACCAACATAAGGAACCTCTTATTTGTTTCACAACCTATTCGAAAGTTCTTTTTATTATTAAAAGACTAGCCAATTTGTGAAAATAGCAAAACATGCCATGTCGAGTGGCTAAACTATATTACACGCATATCTTATTAGTTACAAGCTTGCAACCAGCATATTGTGTTGAGCACTTCAAATACAGATTAAACAGTATCAACCACTGTTATGACAAGCTGTTACCCATTAGTAAAGGAACCAAAGAAATGAGAGCGCCTACGCAGTAAAGAAGACTTGCAAGGACTAAAGGACTCTTTTCCTCAAAAGCTAAAGTTCTTGAATATTATTTAATTACAAAGCTAAAGTTCAAAAGAAGTAAGCCGGGTAAAAGAGAAGTATTGCCTATGACTTAAAAAAGTTCTGTTTTTTCTTCTAATGTGGAATATATAACAGAGCTCTCAAGCACAATTGAACACCTAACCAAAATAAGTCATGCCAAACCTTTCCTTGTATATCCATCCCTCCAATCGAAAAGAAAGCCTACACAATCAGATAGTGGCAGAATATAAAGCCAACTAAGCTCCATATTAAATGCCACTCATCACTCAAATATACAAAATAGCAATTACGAAGTCTGCAACTCGCACTGCAGCCATCCCGTGTCTCGACATCACTCATATAACTCAAAATTAAGGGGTCATTTGGTATGAGAGAAAAGGAATAATAATCCCGGGACAAAATGCAGGATTATTTTATATTGTGTTTGGTTAGGGATATTGGTTAGTCCCGGGAGTATTTATCCCACCATTGCTACTATAATGATGGGATAAATTATCCCATATATATGGTGGGATAACTATCCCATGGGATAACTTTGCCAGCCCATCCCCCATCCCAAACAACCCAGAACAGAATAGCAATTACCAGCACTGCAACTCCTGCTGCAGCATTTCCTTGTCTCATGCATAGCATACACTTGCACTGAAGTCATCTTCAAACTTGGGAAAACATAATTTTATCGAAGTTCTAACATTTGGTCAAAACTAACAGAAAGTGCATCCCAAGGATAGTACATGAAACCATTTGATATCCTGAACAAAAGGCAGAAAAAATTCTTACTGTCTCATTTGAGAAAGAAGCAAGATTTTGCATATGAGAACTCGTCTGTGGCTGACTAAACGCTGCATTCAATTGTTGAGCACTTTCGTATGAATAGCCAGCAGCAGAGGACGGATATGAATAATGCCCATCACTAGCTTCTGCTTTCAGAGATTCTGGTTGTGAAGCTGCTGGCAGTTCATAATTTCCAGCATTTGCATTATTTCTGTGGAATAAATTACTATCAGCCTCATTTCTGAGAGTACCATCACCATAGTATTCAGTGGCCCTGTAAAATATGTAAGTTTACAATTAAAGACTAGCATTTCCCCCTGTTGCTTTGCATACAAGACCTCTCCTTCAAAAAAATTTATTGGCATACAAGCTTTACATAATGACAAAGAGAGCATTGTATACTACATCATAAAATCATTTAAGTGCATCAAACAAAGATTTCATAAATGGAAAAGAGCTGCAAGCTAATATTACTATTTGGTTGACTAAAATATGGAACAATTCTTGAAAACCCAATAAGTAAAACAAGACAGGATTGATGCAAGGATACTCGATTGATGTCATTTATTTATAAAATGAGAAAAATCTACAAGCAACCGATAAAGAAGACAATCCTACACGACAAAATAAATGATTGAAGAACTTTTTAATATCATTGTCCACGTACAGAAAGAGTTGGCTAGAGTTCTCAATTAGCATATCATAAACACACAACTTCCACAGTATATTATATGCAAATAATTAATTTAGTAACTCAGAAGACTAAAAGGAAATGATCAACTAAAAAGAAGGTAAACCTGGTGCCCAAGTGCCCAACTGAAGAACTATCTGCATCTCTGGATGCATCTTCCAAGCTAGTTTTCACGGGGGCAGAGGCCAGTGATCCAGAGAAGGACACACCACCAAAGCTACCAAAACTTAGGTGTGAGCAGTCAGCTGTTTGAACTTGAAGATGGTCTGGAATCACAACAGATGGACTATCCCCATCAGATGGCAAACCCGCTGCATCCTTTACACTTAGTTGTTGCAAGTTCGCGGCAACTGATGAAACTGAGACATTAACATCTTCAACTGCCACAAGATAAGATAACATTCTTATATAAACGAGAGGGTAGTACTTTAAGATTTTGAAAAGCAAAACTACAGTTGAACCAAGAATAAATATTTACTTAAGAAGTGCTAATTGCAACAGCTTACAAGAGATAGCTACTTTTCTTGATAAATCTAAGTAGACACAGCTACTCTCAATTTCAAATATTCATTCCTTCAGATCCGGCGCCTTTTTCATTAAGAACGAAAGACAAAAGATGCAGGATGAAATGCATCCTAAGCAGCTCAGCCACGCATGACAAAACACCCTATAAAGTTGTAGCAATGCTGGAATTGGGATATGTAGGTTGGAAGATGGAATTTATTTATATGAAGAGGAAAAAGGAAGCACTAAAGAGAAGGAGGAAGGCAGGAGACTGCAAATGTTTGTTTAGAGGAGACAGGAGCCACATCTACTCACAAAGATAATCATGCAATTTGCCAATTTGGCAGGAACATTGTGTCGAAACAAACAAAAGCTGAAGAAGTTTAGAAGGAAACAGTAATCCGAAACATTTAGGTTTCTGATATGCTAAATATCCATTGGAAGTAGACATATGAACCAAATGACACGAAGTAAGGATGAGATACAGATGCTAGTACACTAAGATTGACACAGTTAAGATTTAACATTTCATCGCTTCCTACTTAATCCATCTTCAATTTCTGCAAATTAAAAGGCTGAAATCTAATGATAAGATCAGATAGAGGGAGAATCAGCCATAAAATAGATGTGATGATCCCAGGATGTCACACAACTGCATTCTTAAAACAAAAAAGTCAAGATCTACTCCTAACATGCCATAATGAAATAATAAGGTAGAGGGAGATACAACAGAGAGAATTGAGTTAAAAGAAACTAAAGATGCACCAAATTAATTCCAGAGCCTCAATCCTAAAACGCCAACCAATACCACCTTTGTTAAACTAAAACAAAGATAAATATATCCAATGAAATGCATATTGCATGCCAATTTAAGACTTCCACACATATTCACCTTGTGGATGGTCAAAAGTGTGATTCTGGTGCTGATATCTGTACGGGTCATTGTCATACAGAGAAGTACCATCAGCATTATCCTCCTGCAACTTTCTACTGGAAAGGGAACAATCAAGATTTTCATTAGCACTTTCATCTGCCTCTTGAGACTCATCTATCTGAGTTTGATGATCAACTCTGTCAAAAGACATGTTAGACGGATCAGGATGGGGCACAGAATTAGTGGGAGGCTCCGAGACAGCAGGTTGGCTAGCAGCTGATGGCTGCTCAATTGAAGGCCATTCATCATTTGCAGAAAGATTCTGAGATGAATTATCCCTTGGTTCCTGATGTACCTCAGGAACCGTCGACTGATCATCAGAAAACTGCATATTACCATGTGATGCGCCATAAGGAGGTGGTGCCTGATCATGGTTTTGGTTGACACCAGCAGTACTGTCAGATATATTGGGTACACTAGGCACTTTACTCTGTGGCCTACCCATCTTCACAATATCAGCCATTGATACTTGGCCTGGCACCCCGCCCCAAGTAGGTTGATATCCAGAAGAAGGCTGTGAAGCAGCTGAATGACCATCAACTGCAGCTGGTGCCAATCTTTTACTGTCATTTCCTGCAGCATCACTGCAACACCATTCAAGCATAAAAGAGAATTTAAAAACAAGTCAAACATCTCCAATAGCATGCTCGCTTTGCACATACGAATACATGCAATCTCAAATAATTTAACATGCATGCATTTTTTGTTGTTGATGAGTATATTCAACTTAGTAATTTGATTCGGCAATCACAGATAGTTATTGCTCGCGAAATTTGGTTTTTCAGTTACAGCTATAGTATGATAAGAACTTCTCTCTAGTGGAATAGAGACATTGACAAACTTAATGAACCATGCAGTAGGGTCCGAAGGATTATTACACTGTAACCACCGACAGAATCTGAAAGCAACTGATTGTCTAGTGAAAGAACCAAAACATTCTAACAAGACAACAGTACTAACCTGATGGCAGTTGGTCTCCTATCTGTGTTGCCTCCTGCAATTAGAGGGGTAGAAGAGAAGTTGTTTGTTTGTGATCCACTCTCCTTCCTGTAAGCAGGAGCGGGCTTGGTAGACTCTGTCAGAGTTGGTTAGAAATCAAAACATTCCAGTATCAGATAACATGACTTACACAACTCAACCTAATCTCTCTTTCAGAAATTGTGCATTAAATGCATATACCTGATCCACCACGCCCAACATATCGATCCCCACCAGCCCTACTGCCACGGCTCGGAGTGCTACTAGTGATCCAGGACCTAGATTCAGTTGGATCCTTAATCTGAACCAAAGATGAATAGAAGTAAGCAATTTGAGTTAAATCACCTTTTTAAGGTCAGTGACTCAGTTATAAGCAAGCTAAGCTTTGAAGAAAGTCAAGAAACATAGTTACATATCAAGTGGAGTGTGTAATGCAGGGCCCTCGGGATTGTACCGATGTAATCAAATAAAATAAACTTGGAACATCAAGAATATAGAAAGCATACTCAAAAAGATTAGAAATAAATTGGTTCTGGAATTTATGCTGTAGTAATTATGACGAACCTCTTTTCTCTTTTCTCTCTTGCTCTTCACCTCATGAAAAGGATCTAGTCAATTAACAAACTTCAAATTAGAAGGTGGTAAAAAAATATCAACTTCTTCAAGCAGGGAAGATTGGCAAAACATAACTAGGTTTTAGCAAGATAACTACAAAAATGCCACTTCAAGTAATTATCACAGTATAAAACAGTGAATGCATAGGGAGAACATAATTCGCAACAGAAATTCAAATTTTTATGCAGCTTAGGCTATATAATAGTGCTCAAATCAGCAGCAGAATCAAACTGAAGCTATTTCAGAGCCCAACACTTGATTCTTGCTTAAACCTTGTTTCCAAAGGCAGCCTATGTCATCTCAAGGTAAATTCTAAATAACATTCCACGTATCGGTATGGCATTTACAAATAGTATCAACACACCACTTCCCATCTGACTGGTGAGTATAAAGTCGTAATGACTCACAAGTAGCTACATCTAGTTCCTATGTTTTTATGAAGTAAATGATTTCATTCAAAAGCATCAACTAGTTGCATGTGTCTTGTTTGACCAGCAAAAAGATTTGGTAAACACTTGGTTTTAAGGACATGAATAGGAGTTGTTATACCATCAAAACATCTTATATCTCTTTCAAAATGTTCAGTTCCTATCTTAATTAACATTGAAAAGTTAAAGCATTAAAATATAAAAACTTCACATATACACAACCCATTAGATTAATCTTCTTGCTTAGACAAAGCTTGAATTTATAGTGCATTAAACTCAGAGACCACACACCACCATTGTTAGAAACAAAGATGGCAATTTCAAAGCATAAAAAGGGATAATCTGTTCTTTTCTTTTCTTTCCTTTATCCATTTACTCTTACAACCCATACCTAGCTAGGTCTCTCTCTCTCTCTCTCTCTCTGAGTATTCGTTTCATAGATTTCTGACATAATCATTATTATCTTCTTACCAAGAACAACATAGAGGTAACTGGAAAAGAAAAGAGCTTACTTCGCAATATAATCTGAAAACTGAAAAAATGCACGCACACAAAACTGAAGTACCAGAAGATTAATCATGCCAAAAAAAAAAGAATTCAGCTTTAAGGAGTCACAGTTCAAAGGGACATTGAATAAGAGCATATGTCCGGCTTCATTAGTGTACTTTTGTAATCTGAAACTGAAAAATTGCAGGCCCCAAAACAACAGGAAAAAAAAATACCTACAACAACCTACCCAGTGTTATCCCAGAAGTGGAGTCTAAGGAGGGTGGTGAGTATGTAGCCTTACCCACCCCCCCTGCCTTGTGAAGGTAGAGAGGGTGCTTCCAATGAACCCTAGGCTCAAGGAATGAAAATATCTAATACCCAGAAATTAACTATGAAAAGGAACAAAAAAAAGAGTTCAGTTTCAGGGTTCTATAGCTCAGAGGGACTTTGAGTAAGAAGCCAATTGACAGTATAATCTGAAAACTGAAAATAGCATGCATGCAACACTAAAAACCCATAAAAACCTTAATACCATCAATTAATTATGAAAATTTTCCAAAAAAGAGTTCAGCTTTAAGGGTTTATGGTTTAATCTCAATGGAACCTCAAGTAAGAAGCCAATAGACGGCTTCATTAGGGTACTCTAAACTCTAAAAATAGAAATTATATTTTTCATGCACACAAAACTATAGGAACAAAAAAATCCCTAATACCCAGAAATTAATTAAAAAATTACCAAAAATATGTTGAGCTTTAAGGGTTTATAGCTTAAAAGCAACTTAAGTAAAAAATCAATGGTTACATAATCTGAAAACTGAAAAATAGCATGCACACAACACTAAAGAACCAAAAAATCCCCAAAACCCAGAAATCAATTAAGCAAATGAGCTCAGTTTCAAGGTTTTATAGCTTAAATAAACTCCAAGAAACCTCAAGAGTAAGAAGCCAATTGACAGCTCCATTAGTGTACTCTAAACTCTAAAAATGGAAAGTTATATTTTCCATGTACAGAAAACTAAGGAACAATAAATTCTCAATACCCAGAAATCAATCAAAAATGTACCAAAAAAGTGTTGAGCTTTAAAGGCTTATAGCTTAAAAAGGAACCTTGAGTAAGAACCACGTCACTAAAGCTAAGTTGCACGAACTCGGGTGCAGGTGTCCAATATGGGTGCGGATCTAGAGGTCAGATCCTCTATGATCTAATTTTTTTGATTTCGGGATATGGATCCACGTATAGATATGGGTGATCGAAATTTTTAGATTCGGTGACAAGTCCATGTATGGATAACGGGTTGGGGGTTCGGCTAAAAATAATTGAAATAACTAAAAATAGAGTTATAAAACCTAAGTTATGAGATATTAGGTGGAGAACCTTAGGAGAAAATCTTGATCAAGAGGAGAATCCTGGAAGGAGATAAAAGGAAAGAGAGTGACAAAAATTTATAAATACCTAATTTATATGTACAAGGTATTTCATTTTTTTCAATTTCACCTTAGTTTTTCTTTTGCCACAGAAATCATTGAATCTGTCCAAAATTTCTCCGTTGAATTTGGTCTAAGTACCCCAAACTGATTGACCAGATCAGGTACGGTTCCAACACCCACACCTACTTCATGTCGACAAGGGCGTGGCACCAAAAGTGAAGAGTCCGAGCAACTTAAGCACTAAAGAACCAAAAAATCCTCAAAACCCAGAAATCAAGTAAGATAAAAGAGCTCAGTTTCAAGCTTTATAGCTTAAACTCAAAGAAACCTTAAGTAAGAAGCCAATTGACAGCTTCATTAGTATACTCTAAACTCTAAAAAATAGAAAATTTATATTTTTCATGCACAGAAAACTACAAGAACAATAAAATTCTCAATACCCAGAAATCAATTACAAAATTTTACCAAAAAAGTGTTGAGCTTTAAAGGTTTATAGCTTAAAAAGGCAACTTGAGTAAGAGCAACAACACTAAAGAACCAAAAAATCCTCAAAACCCAGAAATCAAATACAATAAAAGAGCTCAGTTTCAAGGTTTTATTGCTTAAACTCAAACGAACCTCAAGTACCAATTGACAGCTTCATTAGTGTACTCTAAACTCTAAAAACAGAAAATTTATATTTTTCATGCACACAAAACTACTGGAACAATAAAATCCTCAACAATTAGAAACTACATACAAAAAATTGTCAAAAAAGTGTTGAGCGTTAAAGGTTTATAGCTTAAAGACACCTTGAGTAAGAACCACAACACTAAAGAACCAAAGAATCCTCAAAACCCAGAAATCCAATACAAAGAAAGAGGTCTGTCTCAAGGATTTATAGCTTAAACTCAAAGAAACCTCAAGCAAGAAGCTAATTGACAGTTTCATTAAGCTACTTGTACACTCTAAAAACAGAAAATTTGTACTTTCCACACAAAAAAATCCCCAAAACCCAAACATTAATTAACCAAAAAAGAGCTCAAATTCAAATGGGTTGCCTCAAGTAAGAAGCTAATTGACAGTTCCATTAAGCTACTCTAAACTCTAAAACCAGAAAATTTGAATTTTTGATTTTTCATACCAAAAAATCCTCAAGACCCAGAAATCAATTCACAACAATGAACCCAAACAGATAAGAGTTTACAGTTTTGAAATTCACCTTGAGTAAGAAGCCTGTTAACAGCTTCGTTAGGGTCCATATTACACTCTTTAAGCATAGCATAGATCTCAGCTTCAGGACAATTAACTATTTCCTTTAAACTTTGTACCATCTTTCTTGAACCTGGTGGAATTGATTGTACTCCAATTCCTCCACCATTGTTACTGTTTTTTCCTCCTCCTCTGCTAGTCATCGGGAAAAAAGTTGTAAAAATCGAAAAAATAAGAGAAACCCACTAAATATTTTCGATTTTCAGATCTATTTCAGTTGATTTTTTTTGCTGTGAAGGAAGAAAAAACACACAGAGTTCACACAGTGACGGCTCGGTTATGGCTCTTTCTCTCTCCTCTTTCTCTCTCTACTGTGAATAAAAGAATCCGCGGCGAAGAGGAGATATATCTAATAAGAAGTAATTTTGGTTTTTCTTTTTCTAAATTTTTTTCCTTTTTTTGGAAAAAAAGAAATCTAATTTCTTTTATTTTCTCCTTAATTACATCGCAATAATAAGGATTTTTTGGTAAAAAATTGATAATTAGTTTGGGGCTTATTTTTAGAACGAGTTTATTTTATGTTTTTTAAAGGTAAAATTATAAAATAATTTAGTTTTAAAATTAATTAGTTTCATCTCATATTAAAAATGAAATAATTTGTTTCAAATTCAAATAAGTTATAAATATATAGTAAAATCGTAAATTCAAATAATTATAAATATATAGTAAAATTGTAAAACAATAAGCTGTGAATATCATTAACTCTACCTTTATGAGATGAGCATATTATTTTTAATTCATCCTAAAAGATCTTTTTTCATTATTTCAATTTAATATTGATTAACCATTTTTAATTAATTTGTTAGCATAAACAACAGCATCTCTTTATTAGGATTTTATTTCTCCTTCTCTATTTAGTTTTGTAATTTTTAGATGGTTTATATTTTTTTTATGATTTTAAAATTTGATAAATTTTTCTTTAGTAGATCTCGACAAATTGAACTTTTATTCAGATTTAAAATTAGTAATATGAACTAGCTCACATATAATTCATCATGTTTAAATATTAATTTAAGGTAAAAATATATAAGTATCTATTACCTCTTCAATTTATTTTATAAATAATTTTATATTTTTTCGGTCTACGTAGCATTTGAAGAAAAAAGTTGGGACCACAAGATAATGTCGTGTATGTTAAAAAAGGATAGAAAATTATTTATAAAATAAATTTAGGGGATAATAGGACCTTAGTATGATATAAATGTATCTTTTAAGATTTCGAACATAGATTGAAGGGATACTTGTGCATTATTTCTTAATTTAATATTAAAAGTATTACATAATATAATTTAATTTCTCTTTCTTTATCTACTTTTTGTAGTTTATTTTAATAATTTTGAATTGTGTAACATTCACTTCTAGAATTATATTTGGAGGCTTATTGTATTTAAATTTAAGTATTGTATATGGATGTCGGGTTTGATCATACTATGACAAATAAGACATAATTTATAATATGTGAGTTAGTTGTATATCAAAATAAAATACGTGAGTTAGTTGTATATTAAAATAAAATCTTAATTCATTTATATAGAAAAGAATAAAGTTAAATTTTGAAATTGAGTTGGACTCAATTTTTTAAAAAAATAAAAAACAAATTATCATATATGAGTCAATCAATTAATCGAACTCATCTCAATTTATTTGCTTACCAATACATATTGGTTCTCTCTCATTATGTTGCTATTGAAGCAAAAAAGTTATTTTTTTGCAAATCAATTTTCTTCGTTATCTTAACCAAGTGTGACAACTTAATTATTATTTTTGTAAGAAAGACCTTATAAAATTATGTTGATACACCTAATAACATATAATACCTTTTGTTTGGAAAAATAAAGAAAAAAAATGCATTCTTCATGAAAGTGAAAGCATTCAATTTTT</genome_strand>
        <mrna_strand>ATTGATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTTGCCACAAACTTTGTTCCCGGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTTTTGAG-AGAA---AAAAATGTTACGTCTAGTATCTTA-TTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACCA-TGTAAACCTAGCAATT-G-TAGA---TTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGA-TTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAAG-ATT-AATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313214" ref_strand="+" ref_description="SGN-U313214        Tomato 200607 #1 [146 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 1e-133, score=473) genbank/nr: chlorophyll(evalue: 2e-144, score=515)">
      <seq>atcaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctccggggaagccccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaatggtagacttgctatgttctccatgtttggattctttgttcaagctattgtcaccggaaagggtccgttggagaaccttgccgaccacattgctgacccagttaacaacaacgcctgggcttttgccacaaactttgttcccggaaagtgagtgcaacaaactgttctccaattagtgtgagattatgagtttttagctttgtgagagatgaatctgtagaaggggtcagttttttaaagcattctgggttatgggttcagtacaagattattgtaaattggtttggattaattaatgaatcttttcatcttgcacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanncccgggggggggggccggaccccttttccccctttggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45091" stop="46708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45391" g_stop="46404" g_length="1014"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1014" r_length="1014" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U313214" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1014</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45391" e_stop="46404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAA</genome_strand>
        <mrna_strand>ATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCCGGGGAAGCCCCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTGTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313215" ref_strand="+" ref_description="SGN-U313215        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 8e-71, score=262) genbank/nr: chlorophyll(evalue: 2e-75, score=283)">
      <seq>aaacacaattcatttctttttattaatattaaatcatggctgcttctactatggctctttcttcctctgctttcgccggtaaggcggtaaaactctcaccatcttcttctgaaatcagtggaaatggtagaatcaccatgaggaagaccgttgccaagcctaagcctgcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattttctggtgaatcaccaagctatttgactggtgagttcccaggtgactacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggagctcttggttgtgttttccctgagcttttggcccgtaacggtgttaagtttggtgaagctgtatggttcaaggctggatcacaaattttcagcgagggtggacttgactacttgggaaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45101" stop="46186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45395" g_stop="45886" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U313215" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45395" e_stop="45886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCT</genome_strand>
        <mrna_strand>AAACACAATTCATTTCT---T-TTTATTAATATTAAATCATGGCTGCTTCTACTATGGCTCTTTCTTCCTCTGCTTTCGCCGGTAAGGCGGTAAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGTAGAATCACCATGAGGAAGACCGTTGCCAAGCCTAAGCCTGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTTTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGAGCTCTTGGTTGTGTTTTCCCTGAGCTTTTGGCCCGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313222" ref_strand="+" ref_description="SGN-U313222        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B2), identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein (Arabidopsis thaliana) GI:16364 | chr2:14529294-14530647 REVERSE | Aliases: F13P17.32(evalue: 1e-109, score=372) genbank/nr: gi|115819|sp|P07370|CB2B_LYCES Chlorophyll A-B binding protein 1B, chloroplast precursor (LHCII type I CAB-1B) (LHCP) gi|72741|pir||CDTO1B chlorophyll a/b-binding protein 1B precursor - tomato gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B(evalue: 2e-118, score=398)">
      <seq>cacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagctgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactctaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagcttaaagttaaggaaattaagaatggtagacttgctatgttctccatgtttggattctttgttcaagctattgtcaccggaaagggaccattggagaaccttgctgacccccttgcagacccagttaacaacaacgcctgggcttttgctacaaactttgttcccggaaagtgagtgcaacaaaatgttgatcactaatctccaattagtgtgagattaggagtttttagctttgtgagggatgaatctatagaaggggtcaggttttttaaagcattctgggttatgggttcagtacaagattattgtaatgtggtgtataaattggttaggggtaattaatgaagaacaagttaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45098" stop="46671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45398" g_stop="45567" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45655" i_length="88">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45656" g_stop="46363" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="889" r_length="719" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="957"/>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U313222" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45398" e_stop="45567"/>
          <exon e_start="45656" e_stop="46363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAAC--AA-----A-CTCT--TCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCA-GTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAA</genome_strand>
        <mrna_strand>CACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGC........................................................................................TTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTTAAAGTTAAGGAAATTAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGACCATTGGAGAACCTTGCTGACCCCCTTGCAGACCCAGTTAACAACAACGCCTGGGCTTTTGCTACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAAATGTTGATCACTAATCTCCAATTAGTGTGAGATTAGGAGTTTTTAGCTTTGTGAGGGATGAATCTATAGAAGGGGTCAGGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336116" ref_strand="+" ref_description="SGN-U336116        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 5e-16, score=81.3) genbank/nr: gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris](evalue: 2e-15, score=85.5)">
      <seq>atttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaacccaaccagcttctctggtacccatgtatggtcctgacgtgtagtacttgggaccatctccggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45106" stop="45931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45406" g_stop="45631" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U336116" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.041" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45406" e_stop="45631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAA</genome_strand>
        <mrna_strand>ATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAA-CCCAA-CCAGCTT-CTCTGGTA-CCCAT-GTATGGTCCTGA-CGTG-T-AGTACTTGGGACCA-TCTCCGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336109" ref_strand="-" ref_description="SGN-U336109        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 9e-107, score=383) genbank/nr: chlorophyll(evalue: 3e-117, score=424)">
      <seq>ttttttttaatccaaaccaatttacaataatcttgtactgaacccataacccagaatgctttaaaaaactgaccctttttacagattcatctctcacaaagctaaaaactcataatctcacactaattggagaacagtttgttgcactcactttccgggaacaaagtttgtggcaaaagcccaggcgttgttgttaactgggtcagcaatgtggtcggcaaaagcctctgggtcttcagcaaggcccaatgggtcaaagctaccaccagggtaaagtggatcaacaacctcaccaagaggcccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgattcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttccccggagaatggtcccaagtacttaacacggtcaggaccataccatgggctaccagaggaagctggcttgggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccgtctttccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtttaattttaatacgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="46682" stop="45119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46384" g_stop="46168" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46167" i_stop="46060" i_length="108">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46059" g_stop="45413" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="864" r_length="647" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U336109" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46384" e_stop="46168"/>
          <exon e_start="46059" e_stop="45413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAATTAATCCAAACCAATTTACAATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCCTTCTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAAGAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCGGCAAGGTTCTCCAACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAAATAAA</genome_strand>
        <mrna_strand>TTTTTTTTAATCCAAACCAATTTACAATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCTTTTTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAACAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCG............................................................................................................GCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGGGCTTCCCCGGAGAATGGTCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATACGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336093" ref_strand="+" ref_description="SGN-U336093        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 3e-108, score=388) genbank/nr: gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C(evalue: 2e-115, score=418)">
      <seq>taagagtttataatggctgcttctactatggctctttcctcctctactttcgccggtaaggcggtgaaactctcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagcctgcctcctctggtagcccatggtacggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacacggctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgntcaagctattgtcactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45122" stop="46444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45422" g_stop="45971" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45972" i_stop="46040" i_length="69">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46041" g_stop="46144" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="654" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U336093" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45422" e_stop="45971"/>
          <exon e_start="46041" e_stop="46144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGA</genome_strand>
        <mrna_strand>TAAGAGTTTATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACGGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG.....................................................................AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGNTCAAGCTATTGTCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336117" ref_strand="+" ref_description="SGN-U336117        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 3e-23, score=101) genbank/nr: gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C(evalue: 4e-26, score=114)">
      <seq>gcacgaggctgcttctacaatggctcttttctcctctaccttcgccggaaaggtaggaaactcgcaccatcttcttctgcagtagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggacctttctacggggaagcctcaagctattggactggtgagtaccctgatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45131" stop="45969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45429" g_stop="45669" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U336117" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45429" e_stop="45669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTA</genome_strand>
        <mrna_strand>GCACGA-GGCTGCTTCTACAATGGCTCTTTTCTCCTCTACCTTCGCCGGAAAGGTAG-GAAACTCGCACCATCTTCTTCTGCAGT-AGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCTTTCTACGGGGAAGCCTCAAGCTATTGGACTGGTGAGTACCCTGATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336105" ref_strand="-" ref_description="SGN-U336105        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1:10477989-10479032 FORWARD | Aliases: F1N18.3, F1N18_3(evalue: 3e-99, score=330) genbank/nr: chlorophyll(evalue: 5e-104, score=346)">
      <seq>acaaagaatcccaaacatggagaacatagcaagtctaccattcttgatctcattcaccgtgagctcagcaaaagcctttgggtcttcagcaaggcccaagggatcaaagctaccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgattcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttccccggagaatggtcccaagtacttaacacggtcaggaccataccatgggctaccagaggaaagctggcttgggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccgtctttccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtctaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="46425" stop="45125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46125" g_stop="46030" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46029" i_stop="45980" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.44"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45979" g_stop="45433" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="656" r_length="559" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U336105" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46125" e_stop="46030"/>
          <exon e_start="45979" e_stop="45433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAT-CCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGA---G------GC--CCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGG-AAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</genome_strand>
        <mrna_strand>ACAAAGAATCCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCATTCACCGTGAGCTCAGCAAAAGCCTTTGGGTCTTCAGCAAGGCCC..................................................AAGGGATCAAAGCTACCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGGGCTTCCCCGGAGAATGGTCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323942" ref_strand="+" ref_description="SGN-U323942        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinase-related, similar to putative protein kinase (GI:11125348) (Homo sapiens); similar to Paired box protein Pax-8 (Swiss-Prot:P47240) (Canis familiaris) | chr1:10277876-10283184 REVERSE | Aliases: F15D2.28, F15D2_28(evalue: 9e-66, score=247) genbank/nr: Ubiquitin-associated(evalue: 2e-76, score=289)">
      <seq>ttgactgctaacgtgcatcctggtcgagagtctgagctttcatattctcctttttctacaacacaagcaatgcccacaaaatatggcaactcaatttcatcaatcagtggttcagctatgcctgaggctatgaagacagttggcttttcatcagcacagcctactcagcagatgctttctggaaatagtgtcgccacaggacctggcgtaccacaacacctaactgtacaccaatattctcaacaagctgttcctattgccccatatggcaacatgattagttatccctttgtgcctcagaactattcatatattccatctgcattccaacaagcatatcctggtaatagcagttaccatcagtcgcttgcagcaatgctcccccaatataagaataccgtttctgccagcagcttgcctcaatctgccactattccttctggatatggtgcttttggaaatacaacaagtatccccgggaacttcccaatcaacccccccgctgctccatctggtactaacttaagttacgatgatgtattaagtgctcagttcaaggataccaatcatttgatgtctcttcagcagaatgagaactcagctttgtggcttcatggacatggttcaagaacaatgccaactgttcccgccaacacgtattatggctttcagggacagaatcagcaaacgggcggatttaggcaaggccaacagccatcacagagctatggatctttggggggctacccacatttctacaattctcaggctggtatctcgttggaccaacaacagcaagaaaaccttcgagatggatcgttgtctggttcacaaggccagccaaagcagtctcaacaacagttatggcaaaacggctactaaatcttactgcctcccatgtttttctgttctttctttttttggggtcttgtaatgagtgtgaaagtggcctttccagctctctctgttgaaataaccctcgttcacgatccctgaagaaacttgactgggtgctgccctgtgccatgactctgtactttacgtgtttatctcagatttaaatgtaacgtaggtaatgtctgagctaacacagtgctctagtcgtctcgtctgtgttttcttctagctcttgtttaacacggttaaccccccttttcgtcgtttttaatctatagttgctagtgttttgtttcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="50174" stop="46515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49874" g_stop="49749" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49748" i_stop="48427" i_length="1322">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48426" g_stop="47965" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="588" r_length="462" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47964" i_stop="47431" i_length="534">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47430" g_stop="46814" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="1204" r_length="616" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U323942" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1205</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49874" e_stop="49749"/>
          <exon e_start="48426" e_stop="47965"/>
          <exon e_start="47430" e_stop="46814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAGGTAATGTTTCTGCTGGAATCTAATCAAATATTGCAGATATCTTTCTATCCTACCCTCAGCTGTAGTGTTGGTACCTTTACCCGCAGACATATTGACCTTAACTAGGACTGTTTTATAATGAATTGAGGGAAAAATTGACCATTTTGATTTTTAGTAAAAATATACAAGTGATTATGCTTGATTTCCAGGCAGGTAAGATGAGTTTGAACAGTAAGGGTCTAGCGAAAAGCTGGTTGTATTGTTTTTCTCCTGATGAAGTAAATTGTTCATGAACGAGAAGATGACTACTGTTTAACATTAGTAAAGTTATGAGTCTTGAGGCTTTGAGCCCCCATCCCCCCCCCCCCCCCCCAACCGTATTTTTTCAATTAACTAGAATGTATCAACAAAAGGACGGAATATTTATGAAGTTATAAAATTAACATAATAAAATAAATGAAGTAATGAAATGAATTATTGGGATTTATTATCTCTTGAAGTCCCAATATACATTCTGTATTTTGAAATTCCCCTCTAATGCATGTCAATATCCATTCTTGAACAAATTCGTATCCGCACAAACACCCTCTTTCCAACTCTCCCTGAAAGAGTTATTGGTCATGGCTTTTCTTAGAGTATTTTGAATGCTAAATTCGGGGCAATCAAGTATAACTGGTGGAGGAGAGAGGTGCAGTGTTATATAGTAAAACGAGGTTGGATTTGGTTTTTAACATTTTCGCAAGTATTAAGTCAGGTTCTCAGAAGTACACTTTTGTTTTCTGAAGGAAGCTTTTCGTTTGGATTGTTCTGATCGTCCCAAAAAAATAAAGTTATAGGTTTAAGCATTTAAAAGGTTCAGTATTTTCTACAAATATTGATCATAGTTCAGATACATCTTAAATGTGGTTCCTCTAAGTGATGTGTTGCTTTAGTTTGATCGGTGATTCATATTCTGGCCAGTGTGTTGTCTATCACAACTCTGTATAATATGAATTGGTGACTTGAGACGGGGAAAGCATTATACATCCTATTTTTCCCCTTTCAAAGTTGGTGCGATATTTTTCTCCCTTCTCTTGTTTTTGTGGTGTGTAATGGTTGACTGTGTCCTCTTCTATCTTTTGTGTAATGCACTCAAGTGCTCATATCTGTATCTCCCCCTTTTCCAACTGTTTGGAATGCCTTGTTTAAGCTGAGGGTCTATCGGAAACAACCTCTCTATCTCTACTAGTTGTACAAGATAGGGGTAAGGTCTGCGTACCCTCTATCCTTCCCAGACCCCACTTGTGGGATTGCATTGAGTATGTTGTCGTTGTAATAATTGACAGTGTTAGTGTTTCCTGCAGGCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAGGTATCCTTTTCTTTTTGTGAGCACACATATTCCTACTGAACTCTCTCTCCAAGAAATTGCTTGTCATGACTCATCATAATGTGAAATGACCGTTTGAATAGCTACTGTCAGGGCGTCAGGGGTAGCAAAATCAGCCCAAGTGAACATGATCCCCTCAACCCGTTCTACATTTATTAGTTCAGCCCATTTTAGTCCCACCCGTTTCAGCCAATCTACGAATTGAAATTGACCGATAGAAACTGTCATAATATTTTCAAAAATACATTTTTTTGTTGGTTATGTTATATAAAACCATTCACTTTTAATTCCATTTCAGCGCAAGTGGTTTTTGGGCAGGTCATGATCCACTTTTTAGTCTATTCCCCCCATTTGACGCCTCTAGCTTCTGTGTTTGTTTGGTCAATTGCATTTGTCAATGTCCACCTTGGTGGTTGGCGCAGCATGTCTGAAATGCTCTGTAATTTCAATTTGTCATTGACTTTATCTGGCATGTCCTTTGCTTTATTTGACACTCCTGTTTCCGTCCTCTTTCAGAATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCTTGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGTTAACACAGTGCTCTAGTCGTCTCGTCTGTGTTTTTTCTTTTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTT-TTTCCCAATAGTAAT</genome_strand>
        <mrna_strand>TTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCCGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCATGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGCTAACACAGTGCTCTAGTCGTCTCGTCTGTG--TTTTCTTCTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTTGTTTCCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341443" ref_strand="+" ref_description="SGN-U341443        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:10268455-10273774 REVERSE | Aliases: F15D2.27, F15D2_27(evalue: 4e-17, score=85.5) genbank/nr: Ubiquitin-associated(evalue: 4e-25, score=118)">
      <seq>gggtttgccatctgatggggatagtccatctgttgtgattccagaccatcttcaggttcaaacagctgactgctcacacctaagttttggtagctttggtggtgtgtccttctctggatcactggcctctgcccccgtgaaaactagcttggaagatgcatccagagatgcagatagttcttcagttgggcacttgggcaccagggccactgaatactatggtgatggtactctcagaaatgaggctgatagtaatttattccacagaaataatgcaaatgctggaaattatgaactgccagcagcttcacaaccagaatctctgaaagcagaagctagtgatgggcattattcatatccgtcctctgctgctggctattcatacgaaagtgctcaacaattgaatgcagcgtttagtcagccacagacgagttctcatatgcaaaatcttgcttctttctcaaatgagacagtctacacaaattctttgcagagtgacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-LK2AR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="52915" stop="49570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52615" g_stop="52412" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52411" i_stop="51889" i_length="523">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51888" g_stop="51621" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="472" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51620" i_stop="49905" i_length="1716">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49904" g_stop="49870" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="507" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U341443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52615" e_stop="52412"/>
          <exon e_start="51888" e_stop="51621"/>
          <exon e_start="49904" e_stop="49870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAAGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAGGTTTACCTTCTTTTTAGTTGATCATTTCCTTTTAGTCTTCTGAGTTACTAAATTAATTATTTGCATATAATATACTGTGGAAGTTGTGTGTTTATGATATGCTAATTGAGAACTCTAGCCAACTCTTTCTGTACGTGGACAATGATATTAAAAAGTTCTTCAATCATTTATTTTGTCGTGTAGGATTGTCTTCTTTATCGGTTGCTTGTAGATTTTTCTCATTTTATAAATAAATGACATCAATCGAGTATCCTTGCATCAATCCTGTCTTGTTTTACTTATTGGGTTTTCAAGAATTGTTCCATATTTTAGTCAACCAAATAGTAATATTAGCTTGCAGCTCTTTTCCATTTATGAAATCTTTGTTTGATGCACTTAAATGATTTTATGATGTAGTATACAATGCTCTCTTTGTCATTATGTAAAGCTTGTATGCCAATAAATTTTTTTGAAGGAGAGGTCTTGTATGCAAAGCAACAGGGGGAAATGCTAGTCTTTAATTGTAAACTTACATATTTTACAGGGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACAGTAAGAATTTTTTCTGCCTTTTGTTCAGGATATCAAATGGTTTCATGTACTATCCTTGGGATGCACTTTCTGTTAGTTTTGACCAAATGTTAGAACTTCGATAAAATTATGTTTTCCCAAGTTTGAAGATGACTTCAGTGCAAGTGTATGCTATGCATGAGACAAGGAAATGCTGCAGCAGGAGTTGCAGTGCTGGTAATTGCTATTCTGTTCTGGGTTGTTTGGGATGGGGGATGGGCTGGCAAAGTTATCCCATGGGATAGTTATCCCACCATATATATGGGATAATTTATCCCATCATTATAGTAGCAATGGTGGGATAAATACTCCCGGGACTAACCAATATCCCTAACCAAACACAATATAAAATAATCCTGCATTTTGTCCCGGGATTATTATTCCTTTTCTCTCATACCAAATGACCCCTTAATTTTGAGTTATATGAGTGATGTCGAGACACGGGATGGCTGCAGTGCGAGTTGCAGACTTCGTAATTGCTATTTTGTATATTTGAGTGATGAGTGGCATTTAATATGGAGCTTAGTTGGCTTTATATTCTGCCACTATCTGATTGTGTAGGCTTTCTTTTCGATTGGAGGGATGGATATACAAGGAAAGGTTTGGCATGACTTATTTTGGTTAGGTGTTCAATTGTGCTTGAGAGCTCTGTTATATATTCCACATTAGAAGAAAAAACAGAACTTTTTTAAGTCATAGGCAATACTTCTCTTTTACCCGGCTTACTTCTTTTGAACTTTAGCTTTGTAATTAAATAATATTCAAGAACTTTAGCTTTTGAGGAAAAGAGTCCTTTAGTCCTTGCAAGTCTTCTTTACTGCGTAGGCGCTCTCATTTCTTTGGTTCCTTTACTAATGGGTAACAGCTTGTCATAACAGTGGTTGATACTGTTTAATCTGTATTTGAAGTGCTCAACACAATATGCTGGTTGCAAGCTTGTAACTAATAAGATATGCGTGTAATATAGTTTAGCCACTCGACATGGCATGTTTTGCTATTTTCACAAATTGGCTAGTCTTTTAATAATAAAAAGAACTTTCGAATAGGTTGTGAAACAAATAAGAGGTTCCTTATGTTGGTGTGTAGGCTACTTGAAATAGCTTATGGAAATTTTCCTAATTACTGGATTCCTTATAATAACATGGTATTTTTTCATATATTGGAAACATATCTAGTTTTCCATTTTAAAAAACTATGTTACAGCCTAGAAACATTCTAAACATATAATAGTGTTAATTCACTTGACCCTCATTTATTATGAGTCCAGCGTAGCTAAACTATTTGCGAACTTTGTATAGAAAAGTAAGTGCCTGCTTGGTGCTCTATGTTGAATAATATTTCATCCAATAATAAACTTCTAATTAGCTAAACATATGTAATGCCCAAAAGCAAAGAAGCATGACAAAAGAAGGGCAGCCCGGTGTACAAAACATCACACGTTGGAAGGGACGCTTCTCAATGCGTGTGATGTAGACAACCTACCCTAATGCAAGCATTAGTGGTTGCTTCCACTTCTCAAACCCGTGTGACCTATAGGTCACATGGAGACAACTTCAATAAAGAAGCATGTCACTTGTCAATTTTTTTTATTAAAAAACTACAGTAGCATGCCAACATGATCCGAGTTACCATTATTTGCTAGAGCATAATATCCATGTTTTACCTAATTTGCTCTCTTGCTATTTTTTGTTCGAGTAGGTCTACACAAATTCTTTGCAGAGTGACATGTTGAC</genome_strand>
        <mrna_strand>GGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAGGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACACAAATTCTTTGCAGAGTGACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14988" PGL_stop="18131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14988" e_stop="15243"/>
            <exon e_start="17012" e_stop="17103"/>
            <exon e_start="17893" e_stop="18030"/>
            <exon e_start="18112" e_stop="18131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.642" e_score="0.906"/>
          <exon-intron don_prob="0.640" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="14988" e_stop="15243" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.642">
            <gDNA_intron_boundary i_start="15244" i_stop="17011" i_length="1768"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17012" e_stop="17103" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.640" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17104" i_stop="17892" i_length="789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17893" e_stop="18030" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.982">
            <gDNA_intron_boundary i_start="18031" i_stop="18111" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18112" e_stop="18131" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15243"/>
              <exon start="17012" stop="17103"/>
              <exon start="17893" stop="18030"/>
              <exon start="18112" stop="18131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCACCATTTCTATAACTGCTCATTTCAAATCTTCTTCTTATATATAAATTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGATTTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAG : GTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGT : TCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAG : GTTTTTAACAATGGAGGATG</gDNA_template>
            <first_frame> F  F  T  I  S  I  T  A  H  F  K  S  S  S  Y  I  *  I  A  H  F  K  S  S  S  Y  I  *  I  H  H  S  R  K  Y  I  H  I  D  D  T  F  D  F  V  Y  I  Y  I  L  L  N  N  *  I  L  I  R  I  W  *  G  I  V  S  V  L  *  L  T  I  F  E  N  A  G  G  F  W  T  C  N  A  R  T   : G  V  I  F  A  W  I  Y  T  C  P  H  R  M  D  I  C  *  V  V  G  V  Q  E  V  V  V  S  L  *  S  :  S  F  R  *  *  S  G  *  T  *  D  L  N  N  Q  G  R  R  S  S  C  L  T  G  R  R  S  V  K  I  C  I  C  E  V  V  K  F  I  G  K  N  K  H  N  *  :  V  F  N  N  G  G   </first_frame>
            <second_frame>  S  S  P  F  L  *  L  L  I  S  N  L  L  L  I  Y  K  L  L  I  S  N  L  L  L  I  Y  K  F  I  I  L  V  N  I  Y  I  L  M  I  R  L  I  L  Y  T  Y  I  Y  C  *  T  I  E  F  *  F  G  F  G  E  V  L  F  L  F  C  S  *  R  F  L  K  M  P  A  V  S  G  P  V  T  P  G  Q  :  V  S  F  L  L  G  Y  I  P  V  L  I  A  W  I  Y  A  E  W  L  E  Y  K  K  W  L  F  P  F  K  V :   H  S  D  N  N  L  D  E  L  E  I  S  T  T  K  E  E  D  R  A  V  L  L  E  G  G  L  S  K  S  A  S  V  K  L  S  S  S  S  V  K  T  N  I  I  R :   F  L  T  M  E  D  </second_frame>
            <third_frame>   L  H  H  F  Y  N  C  S  F  Q  I  F  F  L  Y  I  N  C  S  F  Q  I  F  F  L  Y  I  N  S  S  F  S  *  I  Y  T  Y  *  *  Y  V  *  F  C  I  H  I  Y  I  V  E  Q  L  N  F  D  S  D  L  V  R  Y  C  F  C  F  V  V  D  D  F  *  K  C  R  R  F  L  D  L  *  R  Q  D  R :   C  H  F  C  L  D  I  Y  L  S  S  S  H  G  Y  M  L  S  G  W  S  T  R  S  G  C  F  P  L  K   : F  I  Q  I  I  I  W  M  N  L  R  S  Q  Q  P  R  K  K  I  E  L  S  Y  W  K  E  V  C  Q  N  L  H  L  *  S  C  Q  V  H  R  *  K  Q  T  *  L   : G  F  *  Q  W  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15196" stop="15243"/>
                    <exon start="17012" stop="17103"/>
                    <exon start="17893" stop="18030"/>
                    <exon start="18112" stop="18130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLKMPAVSGPVTPGQVSFLLGYIPVLIAWIYAEWLEYKKWLFPFKVHSDNNLDELEISTTKEEDRAVLLEGGLSKSASVKLSSSSVKTNIIRFLTMED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20774" PGL_stop="22288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20774" e_stop="20839"/>
            <exon e_start="20930" e_stop="21016"/>
            <exon e_start="21114" e_stop="21202"/>
            <exon e_start="21399" e_stop="21461"/>
            <exon e_start="21651" e_stop="21707"/>
            <exon e_start="21815" e_stop="21911"/>
            <exon e_start="21999" e_stop="22157"/>
            <exon e_start="22272" e_stop="22288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.523" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.153" acc_prob="0.977" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.986" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.758" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="20774" e_stop="20839" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.523" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20840" i_stop="20929" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="20930" e_stop="21016" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.153" acc_prob="0.977">
            <gDNA_intron_boundary i_start="21017" i_stop="21113" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="21114" e_stop="21202" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.986">
            <gDNA_intron_boundary i_start="21203" i_stop="21398" i_length="196"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21399" e_stop="21461" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21462" i_stop="21650" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21651" e_stop="21707" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21708" i_stop="21814" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21815" e_stop="21911" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="21912" i_stop="21998" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="21999" e_stop="22157" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.758">
            <gDNA_intron_boundary i_start="22158" i_stop="22271" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22272" e_stop="22288" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20774" stop="20839"/>
              <exon start="20930" stop="21016"/>
              <exon start="21114" stop="21202"/>
              <exon start="21399" stop="21461"/>
              <exon start="21651" stop="21707"/>
              <exon start="21815" stop="21911"/>
              <exon start="21999" stop="22157"/>
              <exon start="22272" stop="22288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAAT : GTTGAGAAGTGGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATT : GTTGGGTACTTGTGGTTTGAATACATCTACAAGCTGGACAAGACAGCTTACAACAAACTCCACCCCTACACGTCATGGATTCCTATTAC : TGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGC : GTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAG : ATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTG : CTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCGATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGA : AACCATTTATCTGGACT</gDNA_template>
            <first_frame> F  R  S  G  L  D  R  Y  I  W  I  I  G  M  I  Y  A  Y  F  H  P  N  :  V  E  K  W  M  E  K  L  E  E  S  E  P  K  R  R  R  T  I  K  S  T  I  C  A  V  T  L  I  :  V  G  Y  L  W  F  E  Y  I  Y  K  L  D  K  T  A  Y  N  K  L  H  P  Y  T  S  W  I  P  I  T :   V  Y  I  C  L  R  N  L  T  Q  E  L  R  N  F  S  L  T  L  F  A :   W  L  G  K  I  T  L  E  T  Y  I  S  Q  F  H  I  W  L  R :   S  N  M  P  N  G  Q  P  K  W  L  L  S  F  I  P  G  Y  P  M  L  N  F  M  L  T  T  A  I  Y  V  L  :  L  S  C  R  L  F  E  L  T  N  T  L  K  S  V  F  V  P  T  R  D  N  Q  K  L  L  H  N  F  I  A  G  V  A  I  S  L  C  L  Y  I  I  S  F  I  L  I  Q  I  P  H  *  *  :  N  H  L  S  G   </first_frame>
            <second_frame>  L  D  L  G  L  T  A  I  Y  G  L  L  A  *  Y  M  P  I  F  T  Q  M :   L  R  S  G  W  R  N  W  R  S  L  N  Q  S  G  D  G  Q  L  S  Q  P  S  V  Q  *  L  *  L :   L  G  T  C  G  L  N  T  S  T  S  W  T  R  Q  L  T  T  N  S  T  P  T  R  H  G  F  L  L   : L  Y  T  Y  A  C  V  I  *  L  R  S  C  G  I  S  L  *  H  S  L   : R  G  L  G  K  L  P  *  K  P  T  S  P  S  S  T  S  G  *   : D  Q  I  C  Q  M  D  S  L  N  G  S  F  H  L  S  R  A  I  L  C  L  I  S  C  *  L  Q  Q  F  M  Y  C :   Y  H  V  G  F  L  N  *  P  T  H  S  N  P  F  S  Y  P  Q  E  T  I  R  S  C  S  T  T  L  L  L  V  S  R  F  L  C  V  Y  T  S  F  P  L  S  L  F  K  S  L  I  N  E :   T  I  Y  L  D  </second_frame>
            <third_frame>   *  I  W  A  *  P  L  Y  M  D  Y  W  H  D  I  C  L  F  S  P  K   : C  *  E  V  D  G  E  T  G  G  V  *  T  K  A  E  T  D  N  *  V  N  H  L  C  S  N  F  N   : C  W  V  L  V  V  *  I  H  L  Q  A  G  Q  D  S  L  Q  Q  T  P  P  L  H  V  M  D  S  Y  Y  :  C  I  H  M  L  A  *  F  D  S  G  A  A  E  F  L  S  D  T  L  C  :  V  A  W  E  N  Y  L  R  N  L  H  L  P  V  P  H  L  A  E  :  I  K  Y  A  K  W  T  A  *  M  A  P  F  I  Y  P  G  L  S  Y  A  *  F  H  A  D  Y  S  N  L  C  T   : A  I  M  *  A  F  *  T  N  Q  H  T  Q  I  R  F  R  T  H  K  R  Q  S  E  A  A  P  Q  L  Y  C  W  C  R  D  F  S  V  F  I  H  H  F  L  Y  P  Y  S  N  P  S  L  M   : K  P  F  I  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20774" stop="20839"/>
                    <exon start="20930" stop="21016"/>
                    <exon start="21114" stop="21202"/>
                    <exon start="21399" stop="21461"/>
                    <exon start="21651" stop="21707"/>
                    <exon start="21815" stop="21911"/>
                    <exon start="21999" stop="22154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRSGLDRYIWIIGMIYAYFHPNVEKWMEKLEESEPKRRRTIKSTICAVTLIVGYLWFEYIYKLDKTAYNKLHPYTSWIPITVYICLRNLTQELRNFSLTLFAWLGKITLETYISQFHIWLRSNMPNGQPKWLLSFIPGYPMLNFMLTTAIYVLLSCRLFELTNTLKSVFVPTRDNQKLLHNFIAGVAISLCLYIISFILIQIPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26504" PGL_stop="30388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26648"/>
            <exon e_start="29835" e_stop="30388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26648" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26649" i_stop="29834" i_length="3186"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="29835" e_stop="30388" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26648"/>
              <exon start="29835" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAA : ATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCGTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTTCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</gDNA_template>
            <first_frame> L  K  V  L  L  K  A  F  L  T  H  S  S  H  S  T  Y  Q  H  I  L  Y  V  S  F  P  I  L  G  K  T  K  K  D  N  S  M  E  E  V  Q  Q  K  L  L  D  I  P   : N  E  E  I  C  E  D  E  N  S  N  I  E  S  S  G  S  T  N  C  C  S  Y  F  A  K  H  K  W  W  Y  Q  V  A  I  F  T  V  F  T  I  I  G  E  V  V  T  S  L  L  V  K  T  Y  F  T  K  G  G  K  S  I  W  L  V  S  L  V  Q  N  A  G  F  P  I  L  L  P  F  L  Y  T  V  S  L  K  N  H  S  Q  I  E  V  I  K  G  N  Q  E  P  H  I  C  I  I  F  L  V  Y  A  V  L  G  V  L  L  G  G  V  S  V  F  N  S  I  G  L  K  Y  L  Q  V  S  T  H  S  L  T  S  T  T  R  L  G  F  S  I  I  F  S  L  F  H  N  A  H  K  F  T  P  V  I  V  N  S  L  V  L  V  T  A  A  S  V  I  L  V  V  H  N  N  E  S  G  E </first_frame>
            <second_frame>  S  K  Y  S  *  K  P  F  S  L  I  L  L  T  L  H  I  N  I  Y  C  M  F  L  S  Q  F  W  G  K  Q  K  K  I  T  L  W  K  K  F  N  K  S  S  W  I  S  Q  :  M  K  K  Y  V  R  M  K  I  P  T  L  N  Q  V  D  Q  L  I  V  V  P  T  L  P  S  I  N  G  G  T  K  L  P  F  L  P  F  L  L  *  L  E  K  *  *  H  H  Y  W  L  K  H  I  L  P  K  V  V  K  V  Y  G  *  S  P  *  C  K  M  Q  G  S  Q  F  F  F  L  S  Y  T  L  C  H  S  K  I  I  A  K  L  R  *  S  K  E  I  K  N  P  I  F  A  *  S  F  *  F  M  L  F  *  V  C  Y  L  V  G  L  V  F  S  T  R  S  V  *  S  T  F  K  Y  Q  H  I  L  S  L  V  P  L  D  *  G  L  V  L  S  S  L  Y  S  T  M  H  I  S  S  P  Q  L  *  *  T  L  *  F  L  *  Q  L  L  Q  S  F  L  W  F  I  I  T  S  L  G   </second_frame>
            <third_frame>   Q  S  T  L  K  S  L  S  H  S  F  F  S  L  Y  I  S  T  Y  I  V  C  F  F  P  N  F  G  E  N  K  K  R  *  L  Y  G  R  S  S  T  K  A  L  G  Y  P  K :   *  R  N  M  *  G  *  K  F  Q  H  *  I  K  W  I  N  *  L  L  F  L  L  C  Q  A  *  M  V  V  P  S  C  H  F  Y  R  F  Y  Y  N  W  R  S  S  N  I  T  I  G  *  N  I  F  Y  Q  R  W  *  K  Y  M  V  S  L  L  S  A  K  C  R  V  P  N  S  S  S  F  P  I  H  C  V  T  Q  K  S  *  P  N  *  G  D  Q  R  K  S  R  T  P  Y  L  H  N  L  F  S  L  C  C  S  R  C  V  T  W  W  G  *  C  F  Q  L  D  R  S  K  V  P  S  S  I  N  T  F  S  H  *  Y  H  S  T  R  V  *  Y  Y  L  L  F  I  P  Q  C  T  *  V  H  P  S  Y  S  K  L  S  S  S  C  N  S  C  F  S  H  S  C  G  S  *  *  R  V  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26648"/>
                    <exon start="29835" stop="30388"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVLLKAFLTHSSHSTYQHILYVSFPILGKTKKDNSMEEVQQKLLDIPNEEICEDENSNIESSGSTNCCSYFAKHKWWYQVAIFTVFTIIGEVVTSLLVKTYFTKGGKSIWLVSLVQNAGFPILLPFLYTVSLKNHSQIEVIKGNQEPHICIIFLVYAVLGVLLGGVSVFNSIGLKYLQVSTHSLTSTTRLGFSIIFSLFHNAHKFTPVIVNSLVLVTAASVILVVHNNESGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37547" PGL_stop="35942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37547" e_stop="37503"/>
            <exon e_start="36378" e_stop="36164"/>
            <exon e_start="36076" e_stop="35942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.933"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="0.930"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="37547" e_stop="37503" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37502" i_stop="36379" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="36378" e_stop="36164" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36163" i_stop="36077" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="36076" e_stop="35942" e_length="135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37547" stop="37503"/>
              <exon start="36378" stop="36164"/>
              <exon start="36076" stop="35942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTCCGATTGATTTTTTCGTCGGCCGATTTCAATAGACAGCAG : GATCTCTGTCTTCAGCTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGGGATTTTTGCATCTCCACTATGGCATCATCAAATATCGCAGTTCTATTAGCTATTGGTGTCATCACTTTACTTGTGATACGAATTATTTATGTTATTAATAGGAGAAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTACACTTATTGTTCTGGGTTCAG : GTGGTCACACAGCAGAAATGTTAAACTTATTATATGTCCTCCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAGGATTCCTTGCTCG</gDNA_template>
            <first_frame> E  F  R  L  I  F  S  S  A  D  F  N  R  Q  Q  :  D  L  C  L  Q  L  R  C  R  A  S  C  N  G  E  G  G  F  L  H  L  H  Y  G  I  I  K  Y  R  S  S  I  S  Y  W  C  H  H  F  T  C  D  T  N  Y  L  C  Y  *  *  E  K  K  A  A  S  L  Q  I  T  T  I  P  Q  Y  T  Y  C  S  G  F  R :   W  S  H  S  R  N  V  K  L  I  I  C  P  P  N  R  E  V  *  A  E  V  L  Y  C  C  C  Y  *  *  Y  E  S  P  K  S  T  R  V  *  G  F  L  A   </first_frame>
            <second_frame>  N  S  D  *  F  F  R  R  P  I  S  I  D  S  R :   I  S  V  F  S  *  G  A  E  L  L  V  M  E  K  G  D  F  C  I  S  T  M  A  S  S  N  I  A  V  L  L  A  I  G  V  I  T  L  L  V  I  R  I  I  Y  V  I  N  R  R  R  K  P  L  H  S  K  S  P  R  S  L  S  T  L  I  V  L  G  S   : G  G  H  T  A  E  M  L  N  L  L  Y  V  L  Q  T  E  R  F  K  P  R  Y  Y  I  A  A  A  T  D  N  M  S  L  Q  K  A  H  V  F  E  D  S  L  L  </second_frame>
            <third_frame>   I  P  I  D  F  F  V  G  R  F  Q  *  T  A   : G  S  L  S  S  A  E  V  Q  S  F  L  *  W  R  R  G  I  F  A  S  P  L  W  H  H  Q  I  S  Q  F  Y  *  L  L  V  S  S  L  Y  L  *  Y  E  L  F  M  L  L  I  G  E  E  S  R  F  T  P  N  H  H  D  P  S  V  H  L  L  F  W  V  Q  :  V  V  T  Q  Q  K  C  *  T  Y  Y  M  S  S  K  Q  R  G  L  S  R  G  I  I  L  L  L  L  L  I  I  *  V  S  K  K  H  T  C  L  R  I  P  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36359" stop="36164"/>
                    <exon start="36076" stop="35943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAELLVMEKGDFCISTMASSNIAVLLAIGVITLLVIRIIYVINRRRKPLHSKSPRSLSTLIVLGSGGHTAEMLNLLYVLQTERFKPRYYIAAATDNMSLQKAHVFEDSLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41436" PGL_stop="40886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41436" e_stop="40886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="41436" e_stop="40886" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41436" stop="40886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGA</gDNA_template>
            <first_frame> F  L  Y  I  Q  E  F  L  I  L  L  L  *  W  L  L  L  P  W  L  F  L  P  L  H  L  P  E  R  R  L  N  S  P  H  L  L  L  K  S  P  E  M  G  E  S  P  *  G  K  L  L  P  R  P  S  Q  P  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  D  H  S  L  G  N  P  Q  A  T  *  P  V  S  F  L  V  I  T  D  G  T  L  L  D  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  V  D  G  P  C  L  V  L  L  D  V  Y  S  P  S  F  W  P  V  M  V  L  S  S  V  K  L  Y  G  S  R  L  D  H  K  F  S  A  R  V  D  L  T  T  W  E  T  Q  A  W  S  M  H  K  A  F  W  L  S  G  L  A  K  L  C  *  W   </first_frame>
            <second_frame>  F  C  T  F  K  S  F  S  F  Y  F  Y  N  G  Y  F  Y  H  G  S  F  F  L  Y  I  C  R  K  G  G  *  T  L  P  I  F  F  *  N  H  R  K  W  E  S  H  H  E  E  N  C  Y  Q  G  Q  A  S  L  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  T  I  L  W  G  I  P  K  L  L  D  R  *  V  S  W  *  L  R  M  G  H  C  W  T  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  *  M  G  H  A  W  C  S  W  M  C  I  P  R  A  F  G  P  *  W  C  *  V  R  *  S  C  M  V  Q  G  W  I  T  N  F  Q  R  G  W  T  *  L  L  G  K  P  K  L  G  P  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  </second_frame>
            <third_frame>   F  V  H  S  R  V  S  H  S  T  S  I  M  A  T  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  T  G  N  G  R  V  T  M  R  K  T  A  T  K  A  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41434" stop="40886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVHSRVSHSTSIMATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="43450" PGL_stop="42728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43450" e_stop="42901"/>
            <exon e_start="42831" e_stop="42728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43450" e_stop="42901" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42900" i_stop="42832" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="42831" e_stop="42728" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43450" stop="42901"/>
              <exon start="42831" stop="42728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43444" stop="42986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG : AAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGA</gDNA_template>
            <first_frame> *  E  F  I  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A   : E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G </first_frame>
            <second_frame>  K  S  S  *  W  L  L  L  L  W  L  F  P  P  L  L  S  P  V  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  L  P  P  L  V  A  H  G  T  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  :  K  T  Q  R  L  L  L  S  S  K  *  R  R  S  R  T  A  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  L   </second_frame>
            <third_frame>   R  V  H  N  G  C  F  Y  Y  G  S  F  L  L  Y  F  R  R  *  G  G  E  T  L  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  C  L  L  W  *  P  M  V  R  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  * :   R  P  R  G  F  C  *  A  Q  S  E  G  D  Q  E  R  Q  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43447" stop="42901"/>
                    <exon start="42831" stop="42728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFIMAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45375" PGL_stop="60813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45375" e_stop="46233"/>
            <exon e_start="46649" e_stop="46698"/>
            <exon e_start="48251" e_stop="48257"/>
            <exon e_start="49500" e_stop="49539"/>
            <exon e_start="52284" e_stop="52292"/>
            <exon e_start="59139" e_stop="59193"/>
            <exon e_start="59564" e_stop="59624"/>
            <exon e_start="60791" e_stop="60813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.789" e_score="0.988"/>
          <exon-intron don_prob="0.878" acc_prob="0.179" e_score="0.580"/>
          <exon-intron don_prob="0.993" acc_prob="0.517" e_score="0.714"/>
          <exon-intron don_prob="0.599" acc_prob="0.087" e_score="0.600"/>
          <exon-intron don_prob="0.751" acc_prob="0.477" e_score="0.778"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.655"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.689"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="45375" e_stop="46233" e_length="859"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.789">
            <gDNA_intron_boundary i_start="46234" i_stop="46648" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.580">
            <gDNA_exon_boundary e_start="46649" e_stop="46698" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.179">
            <gDNA_intron_boundary i_start="46699" i_stop="48250" i_length="1552"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="48251" e_stop="48257" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.517">
            <gDNA_intron_boundary i_start="48258" i_stop="49499" i_length="1242"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="49500" e_stop="49539" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.087">
            <gDNA_intron_boundary i_start="49540" i_stop="52283" i_length="2744"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="52284" e_stop="52292" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.477">
            <gDNA_intron_boundary i_start="52293" i_stop="59138" i_length="6846"/>
          </intron>
          <exon e_serial="6" e_score="0.655">
            <gDNA_exon_boundary e_start="59139" e_stop="59193" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59194" i_stop="59563" i_length="370"/>
          </intron>
          <exon e_serial="7" e_score="0.689">
            <gDNA_exon_boundary e_start="59564" e_stop="59624" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59625" i_stop="60790" i_length="1166"/>
          </intron>
          <exon e_serial="8" e_score="0.826">
            <gDNA_exon_boundary e_start="60791" e_stop="60813" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45375" stop="46233"/>
              <exon start="46649" stop="46698"/>
              <exon start="48251" stop="48257"/>
              <exon start="49500" stop="49539"/>
              <exon start="52284" stop="52292"/>
              <exon start="59139" stop="59193"/>
              <exon start="59564" stop="59624"/>
              <exon start="60791" stop="60813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45395" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45406" stop="45631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45429" stop="45669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAA : ATAAACCTGTAGCGAAGAAGTGAAAGACGTTACTGTTATTAACAAATTTG : TTCTGAG : GAGAAAAACAATACAACCAGCTTTTCGCTAGACCCTTACT : AAAGAGTTG : ATCTATTTCAGTTGATTTTTTTTGCTGTGAAGGAAGAAAAAACACACAGAGTTCA : TAAAATCGTAAATTCAAATAATTATAAATATATAGTAAAATTGTAAAACAATAAGCTGTGA : GAAAGTGAAAGCATTCAATTTTT</gDNA_template>
            <first_frame> K  H  N  N  N  H  Q  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P  E  R  V  R  W  R  T  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  L  L  P  Q  T  L  F  P  E   : N  K  P  V  A  K  K  *  K  T  L  L  L  L  T  N  L  :  F  *   : G  E  K  Q  Y  N  Q  L  F  A  R  P  L  L :   K  S  * :   S  I  S  V  D  F  F  C  C  E  G  R  K  N  T  Q  S  S  :  *  N  R  K  F  K  *  L  *  I  Y  S  K  I  V  K  Q  *  A  V   : R  K  *  K  H  S  I  F </first_frame>
            <second_frame>  N  I  T  T  T  I  K  T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  K  G  S  V  G  E  P  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  F  C  H  K  L  C  S  R  K  :  I  N  L  *  R  R  S  E  R  R  Y  C  Y  *  Q  I  C :   S  E  :  E  K  N  N  T  T  S  F  S  L  D  P  Y   : *  R  V   : D  L  F  Q  L  I  F  F  A  V  K  E  E  K  T  H  R  V  H :   K  I  V  N  S  N  N  Y  K  Y  I  V  K  L  *  N  N  K  L  *  :  E  S  E  S  I  Q  F   </second_frame>
            <third_frame>   T  *  Q  Q  P  S  K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K :   *  T  C  S  E  E  V  K  D  V  T  V  I  N  K  F   : V  L  R :   R  K  T  I  Q  P  A  F  R  *  T  L  T  :  K  E  L  :  I  Y  F  S  *  F  F  L  L  *  R  K  K  K  H  T  E  F   : I  K  S  *  I  Q  I  I  I  N  I  *  *  N  C  K  T  I  S  C  E :   K  V  K  A  F  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="46233"/>
                    <exon start="46649" stop="46652"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45395" e_stop="45971"/>
            <exon e_start="46041" e_stop="46144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.971"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="45395" e_stop="45971" e_length="577"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45972" i_stop="46040" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="46041" e_stop="46144" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45395" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45406" stop="45631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45422" stop="45971"/>
              <exon start="46041" stop="46144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45429" stop="45669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG : AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGA</gDNA_template>
            <first_frame> K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A   : E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G </first_frame>
            <second_frame>  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  :  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P   </second_frame>
            <third_frame>   T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  * :   R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="45971"/>
                    <exon start="46041" stop="46144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45391" e_stop="46404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="45391" e_stop="46404" e_length="1014"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45391" stop="46404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45395" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45406" stop="45631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45429" stop="45669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAA</gDNA_template>
            <first_frame> I  K  T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  K  G  S  V  G  E  P  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  F  C  H  K  L  C  S  R  K  V  S  A  T  N  S  S  P  I  S  V  R  L  *  V  F  S  F  V  R  D  E  S  V  E  G  V  S  F  L  K  H  S  G  L  W  V  Q  Y  K  I  I  V  N  W  F  G  L  I  N  E  S  F  H  L  A  Q </first_frame>
            <second_frame>  S  K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  V  Q  Q  T  L  L  Q  L  V  *  D  Y  E  F  L  A  L  *  E  M  N  L  *  K  G  S  V  F  *  S  I  L  G  Y  G  F  S  T  R  L  L  *  I  G  L  D  *  L  M  N  L  F  I  L  H   </second_frame>
            <third_frame>   Q  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P  E  R  V  R  W  R  T  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  L  L  P  Q  T  L  F  P  E  S  E  C  N  K  L  F  S  N  *  C  E  I  M  S  F  *  L  C  E  R  *  I  C  R  R  G  Q  F  F  K  A  F  W  V  M  G  S  V  Q  D  Y  C  K  L  V  W  I  N  *  *  I  F  S  S  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="46237"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45398" e_stop="45567"/>
            <exon e_start="45656" e_stop="46363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45398" e_stop="45567" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45568" i_stop="45655" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="45656" e_stop="46363" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45398" stop="45567"/>
              <exon start="45656" stop="46363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGC : TTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAA</gDNA_template>
            <first_frame> H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A :   S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P  E  R  V  R  W  R  T  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  L  L  P  Q  T  L  F  P  E  S  E  C  N  K  L  F  S  N  *  C  E  I  M  S  F  *  L  C  E  R  *  I  C  R  R  G  Q  F  F  K  A  F  W  V  M  G  S  V  Q  D  Y  C   </first_frame>
            <second_frame>  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q   : L  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  K  G  S  V  G  E  P  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  F  C  H  K  L  C  S  R  K  V  S  A  T  N  S  S  P  I  S  V  R  L  *  V  F  S  F  V  R  D  E  S  V  E  G  V  S  F  L  K  H  S  G  L  W  V  Q  Y  K  I  I  V  </second_frame>
            <third_frame>   Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  :  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  V  Q  Q  T  L  L  Q  L  V  *  D  Y  E  F  L  A  L  *  E  M  N  L  *  K  G  S  V  F  *  S  I  L  G  Y  G  F  S  T  R  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45511" stop="45567"/>
                    <exon start="45656" stop="46237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQWKWENYNEEDCCQAQASFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46384" PGL_stop="45413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46384" e_stop="46168"/>
            <exon e_start="46059" e_stop="45413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="46384" e_stop="46168" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46167" i_stop="46060" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="46059" e_stop="45413" e_length="647"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46384" stop="46168"/>
              <exon start="46059" stop="45413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTAATTAATCCAAACCAATTTACAATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCCTTCTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAAGAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCG : GCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAAATAAA</gDNA_template>
            <first_frame> H  *  L  I  Q  T  N  L  Q  *  S  C  T  E  P  I  T  Q  N  A  L  K  N  *  P  L  L  Q  I  H  L  S  Q  S  *  K  L  I  I  S  H  *  L  E  K  S  L  L  H  S  L  S  G  N  K  V  C  G  K  S  P  G  V  V  V  N  W  V  S  N  V  V   : G  K  S  L  W  V  F  S  K  A  Q  W  V  K  A  T  T  R  V  K  W  I  N  N  L  T  K  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W  *  F  T  R  E  W  A  Q  V  L  N  T  V  R  T  I  P  W  A  T  R  G  S  W  L  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  C  E  F  H  R  L  S  G  E  G  R  G  G  K  S  H  C  R  S  S  H  G  L  I  L  I  N  K </first_frame>
            <second_frame>  I  N  *  S  K  P  I  Y  N  N  L  V  L  N  P  *  P  R  M  L  *  K  T  D  P  F  Y  R  F  I  S  H  K  A  K  N  S  *  S  H  T  N  W  R  R  V  C  C  T  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  M  W  S  :  A  K  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  P  E  E  A  G  L  G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  A  S  F  T  V  F  P  A  K  V  E  E  E  R  A  I  V  E  A  A  M  V  *  F  *  *  I   </second_frame>
            <third_frame>   L  I  N  P  N  Q  F  T  I  I  L  Y  *  T  H  N  P  E  C  F  K  K  L  T  P  S  T  D  S  S  L  T  K  L  K  T  H  N  L  T  L  I  G  E  E  F  V  A  L  T  F  R  E  Q  S  L  W  Q  K  P  R  R  C  C  *  L  G  Q  Q  C  G  R :   Q  K  P  L  G  L  Q  Q  G  P  M  G  Q  S  Y  H  Q  G  K  V  D  Q  Q  P  H  Q  E  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  V  I  H  Q  R  M  G  P  S  T  *  H  G  Q  D  H  T  M  G  Y  Q  R  K  L  A  W  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  S  F  R  R  R  *  R  R  K  E  P  L  *  K  Q  P  W  F  N  F  N  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46258" stop="46168"/>
                    <exon start="46059" stop="45692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKSLLHSLSGNKVCGKSPGVVVNWVSNVVGKSLWVFSKAQWVKATTRVKWINNLTKRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45631" stop="45413"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTREWAQVLNTVRTIPWATRGSWLGLGSSLPHCNSPISTDFRRRWCEFHRLSGEGRGGKSHCRSSHGLILINK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46125" e_stop="46030"/>
            <exon e_start="45979" e_stop="45433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="46125" e_stop="46030" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46029" i_stop="45980" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="45979" e_stop="45433" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46125" stop="46030"/>
              <exon start="45979" stop="45433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336105" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCC : AGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</gDNA_template>
            <first_frame> T  K  N  P  N  M  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  K  A  S  G  S  S  A  R  P  :  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W  *  F  T  R  E  W  A  Q  V  L  N  T  V  R  T  I  P  W  A  T  R  G  S  W  L  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  C  E  F  H  R  L  S  G  E  G  R  G  G  K  S  H  C  R  S  S  H  </first_frame>
            <second_frame>  Q  R  I  Q  T  W  R  T  *  Q  V  Y  H  S  *  S  P  S  P  *  A  Q  Q  K  P  L  G  L  Q  Q  G  P :   G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  P  E  E  A  G  L  G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  A  S  F  T  V  F  P  A  K  V  E  E  E  R  A  I  V  E  A  A  M </second_frame>
            <third_frame>   K  E  S  K  H  G  E  H  S  K  S  T  I  L  D  L  L  H  L  E  L  S  K  S  L  W  V  F  S  K  A   : Q  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  V  I  H  Q  R  M  G  P  S  T  *  H  G  Q  D  H  T  M  G  Y  Q  R  K  L  A  W  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  S  F  R  R  R  *  R  R  K  E  P  L  *  K  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46125" stop="46030"/>
                    <exon start="45979" stop="45692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNPNMENIASLPFLISFTLSSAKASGSSARPRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45639" stop="45433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLPEEAGLGLAAVFLIVILPFPLISEEDGASFTVFPAKVEEERAIVEAAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="52615" PGL_stop="46814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52615" e_stop="52412"/>
            <exon e_start="51888" e_stop="51621"/>
            <exon e_start="49904" e_stop="49749"/>
            <exon e_start="48426" e_stop="47965"/>
            <exon e_start="47430" e_stop="46814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.486" e_score="0.998"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52615" e_stop="52412" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="52411" i_stop="51889" i_length="523"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51888" e_stop="51621" e_length="268"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51620" i_stop="49905" i_length="1716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49749" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49748" i_stop="48427" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="48426" e_stop="47965" e_length="462"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.486">
            <gDNA_intron_boundary i_start="47964" i_stop="47431" i_length="534"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="47430" e_stop="46814" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52615" stop="52412"/>
              <exon start="51888" stop="51621"/>
              <exon start="49904" stop="49870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49874" stop="49749"/>
              <exon start="48426" stop="47965"/>
              <exon start="47430" stop="46814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAAGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAG : GGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACA : GTCTACACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAG : GCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAG : AATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCTTGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGTTAACACAGTGCTCTAGTCGTCTCGTCTGTGTTTTTTCTTTTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTTTTTCCCAATAGTAAT</gDNA_template>
            <first_frame> G  F  A  I  *  W  G  *  S  I  C  C  D  S  R  P  S  S  S  S  N  S  *  L  L  T  P  K  F  W  *  L  W  W  C  V  L  L  W  I  T  G  L  C  P  R  E  N  *  L  G  R  C  I  Q  R  C  R  *  F  F  S  W  A  L  G  H  Q  :  G  H  *  I  L  W  *  W  Y  S  Q  K  *  G  *  *  *  F  I  P  Q  K  *  C  K  C  W  K  L  *  T  A  S  S  F  T  T  R  I  S  E  S  R  S  *  *  W  A  L  F  I  S  V  L  C  C  W  L  F  I  R  K  C  S  T  I  E  C  S  V  *  S  A  T  D  E  F  S  Y  A  K  S  C  F  F  L  K  *  D   : S  L  H  K  F  F  A  E  *  H  V  D  C  *  R  A  S  W  S  R  V  *  A  F  I  F  S  F  F  Y  N  T  S  N  A  H  K  I  W  Q  L  N  F  I  N  Q  W  F  S  Y  A  *   : G  Y  E  D  S  W  L  F  I  S  T  A  Y  S  A  D  A  F  W  K  *  C  R  H  R  T  W  R  T  T  T  P  N  C  T  P  I  F  S  T  S  C  S  Y  C  P  I  W  Q  H  D  *  L  S  L  C  A  S  E  L  F  I  Y  S  I  C  I  P  T  S  I  S  W  *  *  Q  L  P  S  V  A  C  S  N  A  P  P  I  *  E  Y  R  F  C  Q  Q  L  A  S  I  C  H  Y  S  F  W  I  W  C  F  W  K  Y  N  K  Y  P  R  E  L  P  N  Q  P  P  C  C  S  I  W  Y  *  L  K  L  R  *  C  I  K  C  S  V  Q  G  Y  Q  S  F  D  V  S  S  A   : E  *  E  L  S  F  V  A  S  W  T  W  F  K  N  N  A  N  C  S  R  Q  H  V  L  W  L  S  G  T  E  S  A  N  G  R  I  *  A  R  P  T  A  I  T  E  L  W  I  F  G  G  L  P  T  F  L  Q  F  S  G  W  Y  L  V  G  P  T  T  A  R  K  P  S  R  W  I  V  V  W  F  T  R  P  A  K  A  V  S  T  T  V  M  A  K  R  L  L  N  L  T  A  S  L  V  F  L  F  F  L  F  L  G  S  C  N  E  C  E  S  G  L  S  S  S  L  C  *  N  N  P  R  S  R  S  L  K  K  L  D  W  V  L  P  C  A  M  T  L  Y  F  T  C  L  S  Q  I  *  M  *  R  R  *  C  L  S  *  H  S  A  L  V  V  S  S  V  F  F  L  L  A  L  V  *  H  G  *  P  P  F  S  S  F  L  I  Y  S  C  *  C  F  F  P  N  S  N </first_frame>
            <second_frame>  G  L  P  S  D  G  D  S  P  S  V  V  I  P  D  H  L  Q  V  Q  T  A  D  C  S  H  L  S  F  G  S  F  G  G  V  S  F  S  G  S  L  A  S  A  P  V  K  T  S  L  E  D  A  S  R  D  A  D  S  S  S  V  G  H  L  G  T  R :   A  T  E  Y  Y  G  D  G  T  L  R  N  E  A  D  S  N  L  F  H  R  N  N  A  N  A  G  N  Y  E  L  P  A  A  S  Q  P  E  S  L  K  A  E  A  S  D  G  H  Y  S  Y  P  S  S  A  A  G  Y  S  Y  E  S  A  Q  Q  L  N  A  A  F  S  Q  P  Q  T  S  S  H  M  Q  N  L  A  S  F  S  N  E  T  :  V  Y  T  N  S  L  Q  S  D  M  L  T  A  N  V  H  P  G  R  E  S  E  L  S  Y  S  P  F  S  T  T  Q  A  M  P  T  K  Y  G  N  S  I  S  S  I  S  G  S  A  M  P  E  :  A  M  K  T  V  G  F  S  S  A  Q  P  T  Q  Q  M  L  S  G  N  S  V  A  T  G  P  G  V  P  Q  H  L  T  V  H  Q  Y  S  Q  Q  A  V  P  I  A  P  Y  G  N  M  I  S  Y  P  F  V  P  Q  N  Y  S  Y  I  P  S  A  F  Q  Q  A  Y  P  G  N  S  S  Y  H  Q  S  L  A  A  M  L  P  Q  Y  K  N  T  V  S  A  S  S  L  P  Q  S  A  T  I  P  S  G  Y  G  A  F  G  N  T  T  S  I  P  G  N  F  P  I  N  P  P  A  A  P  S  G  T  N  L  S  Y  D  D  V  L  S  A  Q  F  K  D  T  N  H  L  M  S  L  Q  Q  :  N  E  N  S  A  L  W  L  H  G  H  G  S  R  T  M  P  T  V  P  A  N  T  Y  Y  G  F  Q  G  Q  N  Q  Q  T  G  G  F  R  Q  G  Q  Q  P  S  Q  S  Y  G  S  L  G  G  Y  P  H  F  Y  N  S  Q  A  G  I  S  L  D  Q  Q  Q  Q  E  N  L  R  D  G  S  L  S  G  S  Q  G  Q  P  K  Q  S  Q  Q  Q  L  W  Q  N  G  Y  *  I  L  L  P  P  L  F  F  C  S  F  F  F  W  G  L  V  M  S  V  K  V  A  F  P  A  L  S  V  E  I  T  L  V  H  D  P  *  R  N  L  T  G  C  C  P  V  P  *  L  C  T  L  R  V  Y  L  R  F  K  C  N  V  G  N  V  *  V  N  T  V  L  *  S  S  R  L  C  F  F  F  *  L  L  F  N  T  V  N  P  P  F  R  R  F  *  S  I  V  A  S  V  F  F  P  I  V   </second_frame>
            <third_frame>   V  C  H  L  M  G  I  V  H  L  L  *  F  Q  T  I  F  K  F  K  Q  L  T  A  H  T  *  V  L  V  A  L  V  V  C  P  S  L  D  H  W  P  L  P  P  *  K  L  A  W  K  M  H  P  E  M  Q  I  V  L  Q  L  G  T  W  A  P   : G  P  L  N  T  M  V  M  V  L  S  E  M  R  L  I  V  I  Y  S  T  E  I  M  Q  M  L  E  I  M  N  C  Q  Q  L  H  N  Q  N  L  *  K  Q  K  L  V  M  G  I  I  H  I  R  P  L  L  L  A  I  H  T  K  V  L  N  N  *  M  Q  R  L  V  S  H  R  R  V  L  I  C  K  I  L  L  L  S  Q  M  R  Q :   S  T  Q  I  L  C  R  V  T  C  *  L  L  T  C  I  L  V  E  S  L  S  F  H  I  L  L  F  L  Q  H  K  Q  C  P  Q  N  M  A  T  Q  F  H  Q  S  V  V  Q  L  C  L  R :   L  *  R  Q  L  A  F  H  Q  H  S  L  L  S  R  C  F  L  E  I  V  S  P  Q  D  L  A  Y  H  N  T  *  L  Y  T  N  I  L  N  K  L  F  L  L  P  H  M  A  T  *  L  V  I  P  L  C  L  R  T  I  H  I  F  H  L  H  S  N  K  H  I  L  V  I  A  V  T  I  S  R  L  Q  Q  C  S  P  N  I  R  I  P  F  L  P  A  A  C  L  N  L  P  L  F  L  L  D  M  V  L  L  E  I  Q  Q  V  S  P  G  T  S  Q  S  T  P  L  L  L  H  L  V  L  T  *  V  T  M  M  Y  *  V  L  S  S  R  I  P  I  I  *  C  L  F  S  R :   M  R  T  Q  L  C  G  F  M  D  M  V  Q  E  Q  C  Q  L  F  P  P  T  R  I  M  A  F  R  D  R  I  S  K  R  A  D  L  G  K  A  N  S  H  H  R  A  M  D  L  W  G  A  T  H  I  S  T  I  L  R  L  V  S  R  W  T  N  N  S  K  K  T  F  E  M  D  R  C  L  V  H  K  A  S  Q  S  S  L  N  N  S  Y  G  K  T  A  T  K  S  Y  C  L  P  C  F  S  V  L  S  F  F  G  V  L  *  *  V  *  K  W  P  F  Q  L  S  L  L  K  *  P  S  F  T  I  P  E  E  T  *  L  G  A  A  L  C  H  D  S  V  L  Y  V  F  I  S  D  L  N  V  T  *  V  M  S  E  L  T  Q  C  S  S  R  L  V  C  V  F  S  F  S  S  C  L  T  R  L  T  P  L  F  V  V  F  N  L  *  L  L  V  F  F  S  Q  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52614" stop="52412"/>
                    <exon start="51888" stop="51621"/>
                    <exon start="49904" stop="49749"/>
                    <exon start="48426" stop="47965"/>
                    <exon start="47430" stop="47137"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLPSDGDSPSVVIPDHLQVQTADCSHLSFGSFGGVSFSGSLASAPVKTSLEDASRDADSSSVGHLGTRATEYYGDGTLRNEADSNLFHRNNANAGNYELPAASQPESLKAEASDGHYSYPSSAAGYSYESAQQLNAAFSQPQTSSHMQNLASFSNETVYTNSLQSDMLTANVHPGRESELSYSPFSTTQAMPTKYGNSISSISGSAMPEAMKTVGFSSAQPTQQMLSGNSVATGPGVPQHLTVHQYSQQAVPIAPYGNMISYPFVPQNYSYIPSAFQQAYPGNSSYHQSLAAMLPQYKNTVSASSLPQSATIPSGYGAFGNTTSIPGNFPINPPAAPSGTNLSYDDVLSAQFKDTNHLMSLQQNENSALWLHGHGSRTMPTVPANTYYGFQGQNQQTGGFRQGQQPSQSYGSLGGYPHFYNSQAGISLDQQQQENLRDGSLSGSQGQPKQSQQQLWQNGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 38576 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2143 bytes was the average size of a spliced alignment
$ 16216 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1801 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 109 backtrace matrices have been allocated
$ 
$ date finished: 2009-04-02 20:15:09
-->
