<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 19:57:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="2571" stop="1253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2237" g_stop="1553" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="730" r_length="684" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2237" e_stop="1553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTTTCCCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTA-GGTCTTATTTTCATATATA-AAAAGAG-TTTTTCAGCAGCCAAAAAGGAAAAAAAGAGAGCAGTTTTTCGCAGTAAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATATTCATCTCAATCTTTGATTAGGAACTAACAGAGTTGAATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTTGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGCCAATTTTGGAGAATAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTATCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>GTGGATAAATAAAAGTCCAATTTGGACCAACCCA-TTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTGTTTTTTCAGCAGCCAAAAA-GAGAGAAAGAGAG-A--TTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567069" ref_strand="+" ref_description="SGN-U567069 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15144515|gb|AAK84482.1| (e_value=2e-130) unknown [Lycopersicon esculentum]; (*ATH) AT5G33303.1 (e_value=4e-77) | Symbol: None | expressed protein | chr5:12587406-12588456 FORWARD | Aliases: None; ">
      <seq>gaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaaagataaaagacgatacactaatcgtcaaggtggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="12763" stop="14180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13059" g_stop="13880" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-U567069" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13059" e_stop="13880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTTTGAACTTTCTTTACAACACGTTATCAACACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTTTCTCATAA-TTTCATTATGTCGAATTTTTCCAAACTTGAGTTTGTGGCATTAGATATTTCAGGAAAGAATTATCTTTCATGGGTACTCGATGCAGAGATTCACTTGACTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCTAGTCATGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATTTGACGGTAAAAAATCCACTTGAATTGTGGACTAGTTTAAGAGGGAGATATGACAACCTAAAGGCAACAGTATTGCCAAGATCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACTGTAATTGAATACAACTCTGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTAGGGAGGCTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCAAATGTGATATTGCAACAACAATATCGTGAAAAAGGTTTTTAGAAATATTCTGAACTAATCTCATGTCTTTTTGGTGGCTGAGCAACATAATTCTCTTTTAATGAAAAATCATGAAGATCGTCCCACTAGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGGAGAACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGTTATAATAATGCACGGGGACGTGCCAAAGATAAAAGACGATACACTAATCATCAAGGTGATGG</genome_strand>
        <mrna_strand>GAATTTTAGTAAGTTCTTTTATAACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTC-TTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAAAGATAAAAGACGATACACTAATCGTCAAGGTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U589179" ref_strand="+" ref_description="SGN-U589179 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147777887|emb|CAN77974.1| (e_value=4e-34) hypothetical; ">
      <seq>ggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatgacccggttggggccatcctggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="14227" stop="15190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14509" g_stop="14890" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-U589179" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14509" e_stop="14890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATATGTCAACACAATATCAGGTAGTACAAAATTAATTGATGGCTCTTGAAGAGCGACCTTATTACTACCTGGA-GGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATAACTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTATATTACTACAGTTAACGTAGAAAAGAAAATTGTGCATGAAAAATCACCTGCACTTTCTTCTAGGTTGTACTACACAAATATAAGTACAGTTGAATCAAATGCCATAGTAAATAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGA-CCGGTT-GGGCCATCCAGGATTTA</genome_strand>
        <mrna_strand>GGT-TATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCCGGTTGGGGCCATCCTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599384" ref_strand="+" ref_description="SGN-U599384 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15144516|gb|AAK84483.1| (e_value=7e-14) putative copia-like polyprotein [Lycopersicon esculentum]; ">
      <seq>ggcaagatttgctgattgtcattttgatgaatcagtatacccaacattagggggagaacataagtcattgggaaaagagatagattggaattcatcatctctatctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="15393" stop="16101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15693" g_stop="15802" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-U599384" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>110</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15693" e_stop="15802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGATTTGTTGATTTTTATTTTGATGAATCAGTCTACCCACCATTAGGGGGAGAACATAAGTCGTTGGGAAAATAGATAGATTGGAATTCATCATCTCTATCTCATA</genome_strand>
        <mrna_strand>GGCAAGATTTGCTGATTGTCATTTTGATGAATCAGTATACCCAACATTAGGGGGAGAACATAAGTCATTGGGAAAAGAGATAGATTGGAATTCATCATCTCTATCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U600220" ref_strand="+" ref_description="SGN-U600220 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15144516|gb|AAK84483.1| (e_value=1e-14) putative copia-like polyprotein [Lycopersicon esculentum]; ">
      <seq>tcgaacaaaccaatgtgagcaagaagttcaaagaataatttatttgcagaacattgcaaatcaactaccagatgcatttactaatcttccaaggattactaaatcgcatattccagctgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="15510" stop="16232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15810" g_stop="15932" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-U600220" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>123</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15810" e_stop="15932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACAAACCAATGTGATCAAGAAGTTCAAAGAATAATTTATTTGTAGGACATTGGAAATAAGCTACCAGATGCATTTACTAATCTTCCAAGGATTACTAAATCGCATATTCCAGCTGTTAA</genome_strand>
        <mrna_strand>TCGAACAAACCAATGTGAGCAAGAAGTTCAAAGAATAATTTATTTGCAGAACATTGCAAATCAACTACCAGATGCATTTACTAATCTTCCAAGGATTACTAAATCGCATATTCCAGCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U586539" ref_strand="-" ref_description="SGN-U586539 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147822235|emb|CAN66208.1| (e_value=0) hypothetical; (*ATH) AT4G23160.1 (e_value=3e-64) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=3e-87) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ccaaaaaaaaaaaaaatattaaaaaatatatcatttcaaagtgtgtgtttatatgtttcatatagtggctatttatagccatacattaatgcatacaaggtcattagtgatgtcatattccacatgacactacaattattttacactacaattattttacaacactcccccttggatatctatgtaaaagaaagtacatagatatacataatacgctttatttgctgcctcattaaaaaccttaccaggaaaacccaacttgggacaaaaccatagttaaggaaaagagtacaacgcgtatttcactccccctgatgaaaactttacttgatatcttggagacggcgcattccaatcttgtatctcaacttctcaaacgttgatgttggcaatgcctttgtgaataaatcagcaagattatcacttgaacgaatttgttgaacttctatctcaccattttgttgaagatcatgcgtgaaaaagaactttggtgagatatgctttgtccggtctcctttgatgtatcctcctttcaattgagctatacatgcagcattatcttcgtacattgtggttggtatattctttttcaaagaaaaaccacacatttcctcaatatgatgggtcattgatctcaaccagacgcactctcgacttgcttcatggatggctattatttctgcatgatttgaagaagtggctaccaacgtttgcttcattgatcgccaagatattgccgtgtctccacatgtaaacaaatagcctgtttgtgatcgggctttatgcggatctgataaataccctgcatctgcgtaaccaatcagttctgatttggattcattggaatagaataaacccatgtccatggtccctcgaagatatcgaagtatgtgtttaacaccattccaatgtctttttgttggggaggaactgaatcttgccagtagacttactgcaaaacagatatctggtcgagtattgttagcaaggtacattagtgccccgatcgcactaagataaggagtttcatcaccaagaagctcttcatcattctcttgaggtcgaaatggatctgtattgatgtcaagcgatcttaccaccattggagtactcaatggatgtgagttatccatgtaaaaacgctttagtatcttttctgtgtacgttgattgatgaacaagtattccatttgacaaattctcaatctgtaggccaagacaaaattttgtcttgccgagatctttcatttcaaattcttttttcagacactcaatagcttctaaaagctctttaccagtgccaatgatgttcaaatcatcaacatacacagctattattacaaattcagaccccgaccgtttaataaaaatgcagggacaaatcgggtcatttttgtaccctttctttaacaaatattcactcagacgattgtaccacatccttcctgattgtttcaatccatacagagatttctgaagttttattgaacaagtttctcttgaatctttgtatgcttcaggaactttgaatgcttcaggaattttcatgaaaatgttgtggtccaatgagccatatagataggctgtgacaacgtccattagacgcatttcaagtttttcatgaactgccaaatttatgagatatctgaaggtgattgcatctaccactggagaatatgtctccatataatcaatgccaggtctttgagaaaaaccttgagcaacgagtcgggccttatatctcatgacttcatctttctcatttcttttccgtacaaaaacccatttgtaccccactggcttgataccttcaggtgttcggattatcggtccaaaaacttcacgtatttctagtgaagccaattcagcttgaattgcatccttccattttggccaatcatttctctgtctacattcgtgaacagattttggctcaaaatcttcatattgttgcattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="18403" stop="15942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18403" g_stop="18394" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="138" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18393" i_stop="18121" i_length="273">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18120" g_stop="18074" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="185" r_length="47" r_score="0.787"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18073" i_stop="18015" i_length="59">
            <donor d_prob="0.000" d_score="0.79"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18014" g_stop="16241" g_length="1774"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="1961" r_length="1776" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-U586539" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>1831</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586539" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18403" e_stop="18394"/>
          <exon e_start="18120" e_stop="18074"/>
          <exon e_start="18014" e_stop="16241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCTTTTAGTATCCTTTTCTTTTTTGTTTTTATCCAATAGTGTTGTAAAGAAAGGTCAAAATATAAGAAGAAAAAGACAAGAAGTATAAGATAGAGGACATATTTTTTCTTATTCAAGTGCATCTTCCAAATGGTGACTGATTCTCTCTTTATAGTATTGAGATATCACTCCAAAAGTCATCTAATTAATAGATACATAGTTATCTTGGAAGTTCTGATCACCTTGGAAGCACCTATACATGAACTCATTTAATAGTGGATAAATCTAATGGATAATCCACATATACTATACAATGGATTTACAACACTCCCCCTTGGATATCCATAGATTATGTGCCTCGTTAAAACCTTACTAGGAAAAACCCAGTGGAAAAAAGCCTAGTGAAGAAAAAAGAGTACACATATCT-CATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAACCCAACTTGGTACAAAACCATAGTTAAGGAAAAGAGTA-TACGC--ATATCCCCCCCCCCGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATCCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGAAATGCCTTAGTGAGTAAATCAGCAAGATTATCACTTGAATGAATTTATTGAACTTCTATTTCACCATTTTGTTGAAGATCATGCGTGAAAATGAACTTTGGTGAGATATGCTTTGTCTGATCTCCTTTGATGTATCCTCCTTTCAATTGAGTTATACATGCTGCTTTATCTTCGTATATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTGAATATGATGGGTCATTGATCTCAACCAGATGCACTCTCGATTTGCTTCATAGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACAAAAGTTTGCTTCATTGATCGCCAAGATATTGCCATGTCTCCACATGTAAGCAAATAGCCTGTTTGTGATCGATCTTTATGTGGATAAGATAAATACCTTGCATCTGCGTAACCAATCAGTTCTGACTTGGATTCATTGGAATAGAATAGACCCATGTCCATGGTCCCTCGAAGATATGGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAGCTGAATCTTGCCAGCAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGATAGCAAGGTACATTAGTGCCCCGACCGCACTAAGATAAGGAGTTCCATCACCAAGAAGATTTTCATCATTCTCTTGAGGTTTGAAATGGATCTATATTGATGTCAAACGATCTTACCACCATTGCAGTACTCAATGGATGTGAGTTATCCATGTAAAAACACTTTAGTATCTTTTTTGTGTATGTTGATTAATGAACAAGTATTCCATTTGACAAACTCTTAATCTGTTGGCTGGGACAAAATTTTGTCTTGCCAAGATCTTTCATTTAAAATTCTTTTTTCAGACACTCAACAGCTTCTAAAAGCTCTTTACGAGTGCCAATAATGTTCAAATCATCAACATACACAGCTATTATAACAAATTCAAACCCCGACCATTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCTTTCCTGATTGTTTCAATCTATAAAGAGATTTCTGAAGCTTTATTGAACAGGTTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGTGTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAATGTCCATTAGACACATTTCATGTTTTTCATGAACTGCCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTCGAGAATATGTCTCCATTTAATCAATTCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTAGGTCCTTATATCTCATGACTTCAACTTTATCATTTCTTTTTTAGTACAAAAATCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATTGGTCCAAAAACTTTAGGATTTTCTAGTGAAGTCAATTCAGCTTGAATTGCATCCTTCCATTTTGGTCAATCTTTTCTCTGTCTACATTCGTGAACATATTTTAGCTCAAAATCTTCATCTTGTTGCATTATGTA</genome_strand>
        <mrna_strand>ACTACAATTA.................................................................................................................................................................................................................................................................................TTTTACACTACAATTATTTTACAACACTCCCCCTTGGATATCTATGT...........................................................AAAAGAAAGTACATAGATATACATAATACGCTTTATTTGCTGCCTCATTAAAAACCTTACCAGGAAAACCCAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCACTCCCCCTGATGAAAACTTTACTTGATATCTTGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTTGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTCAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGGGCTTTATGCGGATCTGATAAATACCCTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGG-TCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAATAGCTTCTAAAAGCTCTTTACCAGTGCCAATGATGTTCAAATCATCAACATACACAGCTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGAACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCCATTAGACGCATTTCAAGTTTTTCATGAACTGCCAAATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCATCTTTCTCATTTC-TTTTCCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCACGTATTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATATTGTTGCATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U573735" ref_strand="+" ref_description="SGN-U573735 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37582" stop="35862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37282" g_stop="36633" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36632" i_stop="36468" i_length="165">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36467" g_stop="36167" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="938" r_length="289" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-U573735" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37282" e_stop="36633"/>
          <exon e_start="36467" e_stop="36167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGA-TTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAG--AAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAAATATAATGAAATTTCAAACGGGTCACACGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAATATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAATTAAAATAAATTTGTCCAATGAATTATCTTTCGATCGATCATTTGGCAAAGCCAAAGCCAAAGCCGAAGCCAAAGCCGAAGCGAGCGAGCGACGACGACGGTGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCAATGAGGGACTATTACCTTTTCTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAA-TCCACAACAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.....................................................................................................................................................................AATTATCTCTCGATCGATCATTT------GCCAAAGCCGAAGCCGAAGCCGAAG-CG-AGCGAGCGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCC--TT-TTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565574" ref_strand="+" ref_description="SGN-U565574 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205334|gb|AAT38766.2| (e_value=4e-37) Polyprotein,; ">
      <seq>cagagatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="+" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="37427" stop="38425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37726" g_stop="38125" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="+" ref_id="SGN-U565574" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37726" e_stop="38125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTGTTCTCCATGATCTGATTGTTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCCTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGTCGAAAAGAAGTCGTGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>CAG-AGATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572844" ref_strand="+" ref_description="SGN-U572844 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157343451|emb|CAO67957.1| (e_value=3e-175) unnamed; (*ATH) AT5G08170.1 (e_value=7e-165) | Symbol: EMB1873 | porphyromonas-type peptidyl-arginine deiminase family protein, contains Pfam PF04371: Porphyromonas-type peptidyl-arginine deiminase | chr5:2628326-2631084 REVERSE | Aliases: T22D6.110, T22D6_110, EMB1873, EMBRYO DEFECTIVE 1873; (*SWP) sp|Q8GWW7|AGUA_ARATH (e_value=6e-164) Agmatine deiminase OS=Arabidopsis thaliana GN=AIH; ">
      <seq>cacgagggtcatgttcgcttgtgtttgttgtggtggtgctgctggcgagagagaagaagagggtagtgatggatctgaaaggtacgccggttgaaaatggataccgtatgcctgcagaatgggaaccccactctggttgttggatgggttggccggaacgtccagataactggagaaataatgcagtccacggtcagcgtgcatttgcaactgtagcatctgctatttcaagatttgaatcagtaacagtctgcgctagtgctgctcagtgggaaaatgcacgcagcttgttgcctaagcatatcagggttgtggaaatgagcatcaatgattcttggtttcgtgacactggtccaactttcgtcatcagaaataccacagcaaatgcagaaaatgcagtgtcaagtgttgcaggggttgattggaacttcaatagctggggtggtgttgttgagggctgttacaaagactggaatcttgaccttcttgttgcaagaaagattttggcaattgagaagctcccaaagtttccacattctatggttcttgaaggtggaagcattcatgttgatggagaagggacttgtctcacaaccgaagagtgcctcctgaacaaaaacaggaatccccatttgtctaaagaacagattgagaatgaactaaaagcatatctcggagtcaggaagattatttggctgcctcgagggttgcttggtgatgaggatacaaatggtcatatcgacaacatgtgctgttttgtgaaacctggtgtcgttttgttgtcttggactgatgatgtatctgatgaacagtatgaaagatcctttgaagcactctctattcttgaaaatacttctgatgccagtggtagaaaaatagaagtgatcaaactccatgtacctgggccactctatatgacagatgaggaagcagctggaatagttcaggatggcgaagctaaacctaggccttcaggtacaaggcttgctgcttcttatgtaaacttctacattgctaatggtgcaattattactcccaaatttggggataaaaaatgggatgaagaagctattagagtcctctcactggcatttccaaatcatgaggttgtaggaattgaaggtgctaaggaaattgtactagcaggtggaaatatacattgtatcacacaacagcagccaaccggcccagaataatcacccaaggttagaaatgggattccatgtcttagcagagggataacaagatttgcatgtacaagtgataacatggaattcttcatgatcacacgtgcaaaactttagtttctgtatttgcttcttcgttcgaaattctggagttgccaaaataatgtctgggtccaggtcaaagtaagattttttggttaaagctttagatttcaatagtattaagtttgatcaaacttgtattcaggcttctatctacgctccctggttcatttttacaccatgaaatgaacgagttgcatgtgcaaatgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0128K09-pCoyW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0128K09.1" temp_strand="-" temp_description="C00SLm0128K09.1  CU915759.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0128K09 sequenced_by:sanger upload_account_name:uk">
        <position start="83803" stop="75429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83509" g_stop="83353" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81724" g_stop="81611" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="269" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81492" g_stop="81403" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="359" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81302" g_stop="81218" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="444" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80039" g_stop="79984" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="500" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79884" g_stop="79806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="579" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79230" g_stop="79096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="714" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77809" g_stop="77577" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="947" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76829" g_stop="76671" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1106" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="76125" g_stop="75729" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1107" r_stop="1504" r_length="398" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0128K09.1" gen_strand="-" ref_id="SGN-U572844" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1505</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0128K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83509" e_stop="83353"/>
          <exon e_start="81724" e_stop="81611"/>
          <exon e_start="81492" e_stop="81403"/>
          <exon e_start="81302" e_stop="81218"/>
          <exon e_start="80039" e_stop="79984"/>
          <exon e_start="79884" e_stop="79806"/>
          <exon e_start="79230" e_stop="79096"/>
          <exon e_start="77809" e_stop="77577"/>
          <exon e_start="76829" e_stop="76671"/>
          <exon e_start="76125" e_stop="75729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTACGGTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCGGTGAGAATACTATATTCCTTCGACTTGCCAATTGTTCCACAGAAATTTTTTATTCTTGCATAATTTGATTTTTGGTTCTAGTTTTGGTTGTTTCGTTTTAGGGTTAGTTAGATGTATCTGTGGTGTCTGTGTGGATACAAGGATGATGGCTAATCTTGCAAGTTTTATCTGAACAGTTTTGTAAGAATGGTTGCAACAAATGCTACTAGAAATGACCCAATGTTTTTGTGTTACCATTGGGTGCTCCTACTCTACCCTTTTAACTCTGCTGGAGGAGAATTTGATGAATTTCAATAGGAAGTTCATATTTGACATGAAATTCCAAAAAATAATATTGAAAATCTGGAAGTTTGAGCATGATTATCGGACTGGTTTGCAAAGTTTGTTGTACTTTTGCTAAGGTGAGATTAGACTTTTATCGCGGAATATGAAATAATTGTTTACCGAGCAGAAATGATATTTGACTGGGCAGATAAGTATGGAATTGAGTTTCTATTGAACAAGCAGGTCCATATCATTATTTAAGACCTTTAGGGGGGAAAAATCAAAGTCATTTCGCTATTGTATGAGGAATTACGTCTCTTTTAGTGAAAATTAATGTTGTGGTTTGTGGTGTAAATACTCACTCCGATTTAGCAGAAACCTCTACTTCCATCTTGGACCATAATAGTTATACTAGTAGCCGTAAGATTGATAATTAAAATAAAATAATGCATTTAAATATATATAATCTCACTCCACAGACTCTAATTGTTAGATAATTGATAAGTGAGAATGCAGTTATGGTTATCAAATATAGCATGTAATTCAATAACAGGCCAATATGTAGCTGCAAAACTAAGCATTGTGCCAATCAGGATGAATGGAATTGGTGCAACTCGTTGTCTAGTGAGTTTGCATATTACTCAGGAATGTGACTGTTGCACTCTTGCTTCAGAGCAAATTGTCATACTTGTATTTTAGAGCTGTTCTGATGCCACTGCGAAGGAACTTGACTCATCAGCAAACATAAACTCAGTTCCTGGTTCTCCTTTTTATTATCGGTGAAAGTTTCTTTAGTTCCCTTTAGTATCATAAGTGTCAGAAGTCTCTGTTTGAAATTTTGTATTGGAGTTCCATCTTAGTAGAGTATGAACAGAGGTGGATGTATAGTATATCATACGGGCTTGGCTGAACCCAGTAGCTCCACACCTTGTATATGTGTTGGGACATCCGCTAAATATGTACATGTATAAACTGCCAACCCAGTTGCATGTTCAATGGCAAACTAGAGTTGTTAGAACCCATAAACTTCAAATTTTGAATCTACCTCTGTGTACGGCTGGTTGAGTGGATTTTACAATGTGAATAATCTCTTTGTTGGAATGCAGATTTCACATTTTTTAATGACATTATATGATACCATTTGTATGGTTCTCAACTTATCATGACTATTTATATTTTCTTTAAAGGGTATGTAGCTTCATCCCTGGTCAGTTAGTATTATATCCCAATTTTATTTCTTTTTCCTTCCCTTTCTTTTTGGCCCAACTTTCTGTGCGGCAGGATATTCTGGTAGTAAGTGCTTAAAAATAACCAGAGAAAAGTTTGGGTGTCTATTTGCTGATAGATTTATTATTGAGATGTAGGAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAGGTTGACAGTTTTGAAGGCATCCAAAAGAAATTTCTTATCACATCATGATAGTCCCTCTTTAACTAAAAGAATCATATTCCCTAGCGTGTGGTTCTAACACAACATCTATGTTGTACAGTGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACTGTGAGCTACTGTTTCCTTTCTGTGGAATTTAAATGGTATTTACTTTTAGCCATCACACTGTAGAAAAAGTTACAAAATTTTTTAATCTTTATCTTATCAGTTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTGGTAAGAGAGTTGGATCCCACTCTTGATATCTACAAGGAACATCTATGCTGTTTTTCTATTTCACGCAAAAGCTGTCTACTGGAGTCTCCTGTTCCTGGAGTTTTCACCCATTACCTAAAAAGTGCAATCTGATTTCCATTAATTTTAAGGTTTTGTTTTTCCTTTGGAGGCTTAACAAATATACTCAGTCTCTGTTAGACCTGCTGTAACTAAGGTCTATAAACACAGGAAGAAAGGGTGGAAATAAGACCTAAATATTACTGCTTTATTTAGTTATTACAATGTATATGAATTTTTAGCTGTTACTTACCAGTTACATAGATGTCAAGATGGTTATTAAGGAAGAAATGCAGTTTATTCTGGAGGATATTGGTTCTGTAGTCAAAGAGGAGGGTAAGGTTACTCAAAATACCTTGGTTGTTGGGTGAATTATCATTCACAGATCTTGTTTGTGTATTTCTAAATTTGTTCTATTAGTTTATGTATAGCAGTGTAGTGTGTTGTTATCTTTGTGGTGTGTTTGGAAATGTTCAGCATAATGACTTTAAAACGAATAACACTAACAGTCTCAAATCTGCAATTTACGGAACTAAAGGTTTGAACTTATGATTATCTTGTTTGTAACAAAATATTAGTTCTCCATAGGTTTATCTTTAAAGCTGTATGCTCTTTAGTCAGAAATGTGTGTTTTTGTTGTCAAGGGAAAATTCTCATCTATTCCACTAAGGAAATTCTTTAGCCCCAAATGTCAATCATCAGACAATTTAGCTAATAGCCAATCTGAAATGATGGTACTTTATGTTGACTTGTTCCTTCTCAAATGCTTGAGGCTTTCTTAGCATTCAGCTCCAGCATATGACACGATTATTCTCCCGCTTGTCATGTCATATGGAATCCATAGAAATACAGTTTGATGATATGTTGAAGGACTCAGGATATTTATCTTCTGTGTTTAGTGTTCTGCTTTGATTGCCTAGAACATCCACAAAGAGAAATATACTTTAGTGTGCTTGGTTAAATCACATGTGTTCTTTGTTCTATGACTTCTGTCTTTCCATAGTAATATTCTTAAAACCATATTCAGTAATATATGGTTGTCCTTGGATTGATGCAAGATACTTTTGGTTTCTTTCTCTCTGGCAAAACATATTCATGATGGTGATATTTGAAATATGTAGGTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAGGTCTGCAAATTTCAAATGCTGCAAATGTGTCTTGTTGATGTACATTATTGTTCATTAGATACAGCTCCATTGAGTTAACCATTCAGTTCTTTTGCTTAGATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAGGTAGATACATTTTATTTATTTTCTGAACTCAACTTGATTTTCTTATAGTTTGAAAACGAGGCTCTTTCTCCTTTTCAGAGAGTTGATTTCGGTAGCTGTGATCTATTTATGAAACTCCAGTCATAGACAAACTCCCGATCATTTTAAACTTATTTTTAAGTCTTTTTTGACCTTGCCAAACACTTTCTAACTTATTTTAAGTGATTTTTGACTTATTATAAGTTATTTTTATATTTGCCAAACACTTCCAAAAGTCAAAAGCTGACTTAAAAGTAGGTTTGACCAACTTTTAAGCCAATCCAAACACCCTCCAAATGACATGTTTAATTTTATAGCTAGTAATATAAGGTACTGAATGTACCAACAGATTGAATTTAGAACGCTGAAAAAAAGAGTTCAAAGTTCTGCTGGTAATTTACTTTCATCTACTTAGGCGTTTATCAGTTCCATGCTGTGTCTTTATCTATTTGCCTTGAATATCATATTTTATGTATTCTGAATTGATATGCCGATCTAGTGATTGTTGTTTAGATGCAAAGAACATGCTATATTATCCTCCTTTATCCTCTCTTCAGGGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTGGTATTCATTCTGCTCATGAACTTACATTTTCTTGTGCACATAATTAGTCTTAGTCCAATTGTGTCCTTGACCTGCAAAATTCCATGCTTTCATGTGGTTGTGTTGAATTTAACAAAGTTCTAACCTTAGTTGCGTCATTAATATGATGTGCATCCATTCTAATTTTTGAATAAGACAAAACAGCCGTGAGAATCTTGAAATTTCCTACACCAATACAAATGTGTGACATCATCAATCTCCCCAATGGGGTAATAGATCCAAGATACTTAAAACTTCATCTCTTTTGGATTGTTGGAGTATCAAGCCTCATATTCATGCTAGGTTAATTTGATTCATCACTGAACTTGCACGTCAAATATTCTGTCTTGGTTTTGCTCAATTTGAATCCCTTAAACTCCAGAGTCCATCTCCAAACTTCCAACTTAGTTTTAACTTTGCCACGAGTCTCATCAATCCGAACTATATCCTTTGCAAATAACATACATTATGGCACCTCACATTGGATTTGCCGCGTCAATTCATCCATTAAAAAGCAAATAAAAACGTGTTAAGAGTTCATCACTGGTGCAACCCCATCACAACTGGGAAGTGCTCTGAGTGTCTGCCTGTCCTTACCTGGGTCTTGACTCCATCGTACATGTCCTTAATCGTCCTACTGTACTCCACATGTACACCTCTAGCCTTCGGGCATCTCCACAGAACCTTCATAGAAATGTTAAGTTCAAAATTAGCTAACTTAATGGTATTGACCTGTAATTCTGAGCCAATTATAAGGATTTTATTACAAAGAAGTCTTTAAAATTCGATATATCTATGTTGTTTTCATATTTGCGAAGAAGAAATTAGTTGAAGGAAAGATAAGAAGAGAATTGAATACTGAGTCGGGTATTACACTATTGCAGGATCAAAATACCCTTAAATAATCTAAAGTACTTTATATTTTAATGACAACGCAGAATCACATTCAAATTTTTTCCCTAATGAACAATCCAAAGGGACCTACATAAAAAGAATATTAATTTTAATAATCGGAATAAAGTTGGTATATTAAAATTTGTTAGTTCCTTGGAGGTTATTATCCTAAAGATGATTTCTTATTAGAGAGTACCAGTGTCGTTTTCAATTAACGTATTAGGATGTTAACTCTTCAATGAGTTTGCGGTTTATTGTTTTATCTTTCAAATTTTATGCACTGGCCGTTGCTGATGTTTCCCTTATTATATTTTTTTCCAAAATAATCATAGAGAAGTGTATACTAAGGTTTTAGTTTACTGTTGACGTTGCAGGTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAGGTAATTTTTTGGTAATATTCTACAACTGTTATTCATGAAATAAAAAGAAAAAAGATAAATTGTAGAGCTGTCTAAAAAGATCAATGACTCTCAAGTCAATGTTTGGTAGAATTTGTTAATATGATATAGAAATGATGATTTATTTCTCTTATCTTTTTCTATAAATGCAACACATTTATGGGTAGGATGGTTTTCATCAGTTAAAATTTTGGATCAAAGATCACTAAATATGGATTGCAGTTGTTTTTTCTATGACGCTGCCTTCATTTCTGTTGATTACACTGGGTATGTTGTTGTCGTCGTCTTCCTCTCTGTTGAAATATAACTTTCATTTTGCTCGCACAACAGTAATCATAAATCTTTGTGTATAAATTAATTGAAACAACTATCCTTTTACATCACTGTATTGACTCTCAAAAGACAAAGTCCCTAGAGAAATTGTGGCCTTTTAATTCCAAGCTTTTGACAGACTTCTTGGTCATGTTCTGTGAAAAGGCAGAATGTAACTTGACCTTCTGTAACGACTGCTTGGATGAAATATCACTTGTGGAACATTATATTAGTGACATTATAGATCTCATGCAATAGTAATCTTTCTGAACTCCAAAGTACCCCAAGCACTTCTCTAGCTTCGCTATTCTACTATCTTAAGAAACTACAATCTAAAAGTAGAAAATCAAGCATCTTTCTCTGTATATTTTTTTGGAGTCTCATCATTCTGATCTCATCCTACTATTGTCTTTACAGGATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAGGTAAGCAAGGAACTTGATCTGCTTGCTATTTCTAAGAGTCGGTAGTTATTGAACATAATGGAAAGACCAATTATAAAAAAATTACCAGGCAACCCTTTTGCAGTAAATATTGCTTCCCATGACCCAGAATGATCGAACCCAAAAATAATAAAGTCACGAGAAAGATTCCTTATAGAAACTCGGATGCTAAACAGAAGAATCCATTGAAAAAAAGAAAGGAACAAACAAGACCAAGCATATGATTATAAATGATGACTATTCATGTACGCATGCATCCACATGCTTATGCATTAGTTTAGTAATCGTTAGACCTACTCCTCGTATGTGCACATACCAGTTCCATTATCATTTAGCACTACAGATTTGGCATTGTAATTGAGAGATGCTAAACATACTTCTTAACCACTATGGTCATGAAATATTTGATGAAAAATGTTGCAGTCTGATACTGCGAACTTATTCTTGCACCGAATATTTCATCACGTTTCAGTTATAAAATCTAATTTTCTCTCCAGAACTCAATTTTGAATATATGATTGCTGCAGGTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAG-TGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTACGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTT</genome_strand>
        <mrna_strand>CA-CG-AGGGTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG......................................................................................................................TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT....................................................................................................TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG...................................................................................................ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCCAAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGGAATTGAAGGTGCTAAGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATCACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTAAGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2237" PGL_stop="1553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2237" e_stop="1553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="2237" e_stop="1553" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2237" stop="1553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTTTCCCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGGTCTTATTTTCATATATAAAAAGAGTTTTTCAGCAGCCAAAAAGGAAAAAAAGAGAGCAGTTTTTCGCAGTAAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATATTCATCTCAATCTTTGATTAGGAACTAACAGAGTTGAATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTTGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAATAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTATCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> V  D  K  *  K  S  N  L  D  Q  P  I  F  F  P  *  A  H  S  Y  E  A  N  I  S  L  F  R  S  Y  F  H  I  *  K  E  F  F  S  S  Q  K  G  K  K  E  S  S  F  S  Q  *  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  N  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  C  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  I  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V  S  C  V  I  G  L  L  L  S  C  Y  I  C  L  V  E  L  L  V  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  R  R  E  S  I  D  L  G  I  L  P  L  L  S  C  Q  A  F  F  </first_frame>
            <second_frame>  W  I  N  K  S  P  I  W  T  N  P  F  F  S  H  K  P  I  L  M  R  Q  I  *  A  Y  L  G  L  I  F  I  Y  K  K  S  F  S  A  A  K  K  E  K  K  R  A  V  F  R  S  K  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  Y  S  S  Q  S  L  I  R  N  *  Q  S  *  I  W  W  P  A  A  S  V  L  L  S  *  T  V  A  A  K  F  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  *  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  V  *  L  V  Y  Y  Y  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  S  S  L  G  S  N  R  E  G  K  V  *  T  W  V  F  F  R  C  Y  P  V  R  H  S  L </second_frame>
            <third_frame>   G  *  I  K  V  Q  F  G  P  T  H  F  F  P  I  S  P  F  L  *  G  K  Y  K  P  I  *  V  L  F  S  Y  I  K  R  V  F  Q  Q  P  K  R  K  K  R  E  Q  F  F  A  V  K  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  I  H  L  N  L  *  L  G  T  N  R  V  E  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  L  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  I  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  L  L  L  V  Q  I  E  K  G  K  Y  R  L  G  Y  S  S  A  V  I  L  S  G  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1899" stop="1672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNSLDLVQSYFVVARCLALVLWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHVNLGVLCDWFIIILLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13059" PGL_stop="13880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13059" e_stop="13880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="13059" e_stop="13880" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13059" stop="13880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATATTTTGAACTTTCTTTACAACACGTTATCAACACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTAATTCACATATTTTCTCATAATTTCATTATGTCGAATTTTTCCAAACTTGAGTTTGTGGCATTAGATATTTCAGGAAAGAATTATCTTTCATGGGTACTCGATGCAGAGATTCACTTGACTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCTAGTCATGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATTTGACGGTAAAAAATCCACTTGAATTGTGGACTAGTTTAAGAGGGAGATATGACAACCTAAAGGCAACAGTATTGCCAAGATCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACTGTAATTGAATACAACTCTGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTAGGGAGGCTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCAAATGTGATATTGCAACAACAATATCGTGAAAAAGGTTTTTAGAAATATTCTGAACTAATCTCATGTCTTTTTGGTGGCTGAGCAACATAATTCTCTTTTAATGAAAAATCATGAAGATCGTCCCACTAGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGGAGAACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGTTATAATAATGCACGGGGACGTGCCAAAGATAAAAGACGATACACTAATCATCAAGGTGATGG</gDNA_template>
            <first_frame> L  Y  F  E  L  S  L  Q  H  V  I  N  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  M  S  N  F  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  T  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  H  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  N  P  L  E  L  W  T  S  L  R  G  R  Y  D  N  L  K  A  T  V  L  P  R  S  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  V  V  F  R  I  T  S  Q  L  K  L  C  R  E  A  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  *  K  Y  S  E  L  I  S  C  L  F  G  G  *  A  T  *  F  S  F  N  E  K  S  *  R  S  S  H  *  S  C  S  I  T  G  G  K  C  G  G  R  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  C  Q  R  *  K  T  I  H  *  S  S  R  *  W </first_frame>
            <second_frame>  Y  I  L  N  F  L  Y  N  T  L  S  T  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  F  L  I  I  S  L  C  R  I  F  P  N  L  S  L  W  H  *  I  F  Q  E  R  I  I  F  H  G  Y  S  M  Q  R  F  T  *  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  L  V  M  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  K  I  H  L  N  C  G  L  V  *  E  G  D  M  T  T  *  R  Q  Q  Y  C  Q  D  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  L  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  F  M  P  Q  M  *  Y  C  N  N  N  I  V  K  K  V  F  R  N  I  L  N  *  S  H  V  F  L  V  A  E  Q  H  N  S  L  L  M  K  N  H  E  D  R  P  T  R  A  A  P  L  P  E  A  N  V  V  G  E  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  A  K  D  K  R  R  Y  T  N  H  Q  G  D   </second_frame>
            <third_frame>   I  F  *  T  F  F  T  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  N  S  H  I  F  S  *  F  H  Y  V  E  F  F  Q  T  *  V  C  G  I  R  Y  F  R  K  E  L  S  F  M  G  T  R  C  R  D  S  L  D  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  *  S  *  *  G  E  G  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  F  D  G  K  K  S  T  *  I  V  D  *  F  K  R  E  I  *  Q  P  K  G  N  S  I  A  K  I  S  L  *  V  D  A  F  T  V  S  R  F  *  D  C  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  *  G  G  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  S  C  L  K  C  D  I  A  T  T  I  S  *  K  R  F  L  E  I  F  *  T  N  L  M  S  F  W  W  L  S  N  I  I  L  F  *  *  K  I  M  K  I  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  E  N  V  I  N  L  K  *  K  E  M  I  I  G  V  I  I  M  H  G  D  V  P  K  I  K  D  D  T  L  I  I  K  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13059" stop="13655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYFELSLQHVINTKLLLAKVLYKYFYLIHIFSHNFIMSNFSKLEFVALDISGKNYLSWVLDAEIHLTAKGLDATITQGNEASSHDKAKAMIFLRHHLDEGLKIEYLTVKNPLELWTSLRGRYDNLKATVLPRSRYEWMHLRFQDFKTVIEYNSVVFRITSQLKLCREAIKDEDMLEKTLTTFHASNVILQQQYREKGF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13672" stop="13878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHVFLVAEQHNSLLMKNHEDRPTRAAPLPEANVVGERDQSEVKRDDHRGYNNARGRAKDKRRYTNHQGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14509" PGL_stop="14890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14509" e_stop="14890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="14509" e_stop="14890" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14509" stop="14890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTATATGTCAACACAATATCAGGTAGTACAAAATTAATTGATGGCTCTTGAAGAGCGACCTTATTACTACCTGGAGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATAACTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTATATTACTACAGTTAACGTAGAAAAGAAAATTGTGCATGAAAAATCACCTGCACTTTCTTCTAGGTTGTACTACACAAATATAAGTACAGTTGAATCAAATGCCATAGTAAATAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCAGGATTTA</gDNA_template>
            <first_frame> G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  W  L  L  K  S  D  L  I  T  T  W  R  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  N  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  V  N  V  E  K  K  I  V  H  E  K  S  P  A  L  S  S  R  L  Y  Y  T  N  I  S  T  V  E  S  N  A  I  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  </first_frame>
            <second_frame>  V  Y  V  N  T  I  S  G  S  T  K  L  I  D  G  S  *  R  A  T  L  L  L  P  G  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  I  T  I  M  L  R  R  L  M  K  E  R  L  N  T  F  I  L  L  Q  L  T  *  K  R  K  L  C  M  K  N  H  L  H  F  L  L  G  C  T  T  Q  I  *  V  Q  L  N  Q  M  P  *  *  I  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  Q  D  L </second_frame>
            <third_frame>   Y  M  S  T  Q  Y  Q  V  V  Q  N  *  L  M  A  L  E  E  R  P  Y  Y  Y  L  E  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  *  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  Y  Y  Y  S  *  R  R  K  E  N  C  A  *  K  I  T  C  T  F  F  *  V  V  L  H  K  Y  K  Y  S  *  I  K  C  H  S  K  *  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14551" stop="14889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLLKSDLITTWRTILSIDNALYCSKSQRNLLSFKVIRQNNYHVETANEGKVEYLYITTVNVEKKIVHEKSPALSSRLYYTNISTVESNAIVNKRFTNFNDFIIWHDRLGHPGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15693" PGL_stop="15802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15693" e_stop="15802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="15693" e_stop="15802" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15693" stop="15802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAAGATTTGTTGATTTTTATTTTGATGAATCAGTCTACCCACCATTAGGGGGAGAACATAAGTCGTTGGGAAAATAGATAGATTGGAATTCATCATCTCTATCTCATA</gDNA_template>
            <first_frame> G  K  I  C  *  F  L  F  *  *  I  S  L  P  T  I  R  G  R  T  *  V  V  G  K  I  D  R  L  E  F  I  I  S  I  S   </first_frame>
            <second_frame>  A  R  F  V  D  F  Y  F  D  E  S  V  Y  P  P  L  G  G  E  H  K  S  L  G  K  *  I  D  W  N  S  S  S  L  S  H  </second_frame>
            <third_frame>   Q  D  L  L  I  F  I  L  M  N  Q  S  T  H  H  *  G  E  N  I  S  R  W  E  N  R  *  I  G  I  H  H  L  Y  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0128K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15810" PGL_stop="15932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15810" e_stop="15932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="15810" e_stop="15932" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15810" stop="15932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAACAAACCAATGTGATCAAGAAGTTCAAAGAATAATTTATTTGTAGGACATTGGAAATAAGCTACCAGATGCATTTACTAATCTTCCAAGGATTACTAAATCGCATATTCCAGCTGTTAA</gDNA_template>
            <first_frame> S  N  K  P  M  *  S  R  S  S  K  N  N  L  F  V  G  H  W  K  *  A  T  R  C  I  Y  *  S  S  K  D  Y  *  I  A  Y  S  S  C  * </first_frame>
            <second_frame>  R  T  N  Q  C  D  Q  E  V  Q  R  I  I  Y  L  *  D  I  G  N  K  L  P  D  A  F  T  N  L  P  R  I  T  K  S  H  I  P  A  V   </second_frame>
            <third_frame>   E  Q  T  N  V  I  K  K  F  K  E  *  F  I  C  R  T  L  E  I  S  Y  Q  M  H  L  L  I  F  Q  G  L  L  N  R  I  F  Q  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0128K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="18403" PGL_stop="16241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18403" e_stop="18394"/>
            <exon e_start="18120" e_stop="18074"/>
            <exon e_start="18014" e_stop="16241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.600"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.787"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="18403" e_stop="18394" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18393" i_stop="18121" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="0.787">
            <gDNA_exon_boundary e_start="18120" e_stop="18074" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18073" i_stop="18015" i_length="59"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="18014" e_stop="16241" e_length="1774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18403" stop="18394"/>
              <exon start="18120" stop="18074"/>
              <exon start="18014" stop="16241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCCTTTTA : ATATACTATACAATGGATTTACAACACTCCCCCTTGGATATCCATAG : AAAAAAGAGTACACATATCTCATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAACCCAACTTGGTACAAAACCATAGTTAAGGAAAAGAGTATACGCATATCCCCCCCCCCGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATCCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGAAATGCCTTAGTGAGTAAATCAGCAAGATTATCACTTGAATGAATTTATTGAACTTCTATTTCACCATTTTGTTGAAGATCATGCGTGAAAATGAACTTTGGTGAGATATGCTTTGTCTGATCTCCTTTGATGTATCCTCCTTTCAATTGAGTTATACATGCTGCTTTATCTTCGTATATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTGAATATGATGGGTCATTGATCTCAACCAGATGCACTCTCGATTTGCTTCATAGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACAAAAGTTTGCTTCATTGATCGCCAAGATATTGCCATGTCTCCACATGTAAGCAAATAGCCTGTTTGTGATCGATCTTTATGTGGATAAGATAAATACCTTGCATCTGCGTAACCAATCAGTTCTGACTTGGATTCATTGGAATAGAATAGACCCATGTCCATGGTCCCTCGAAGATATGGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAGCTGAATCTTGCCAGCAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGATAGCAAGGTACATTAGTGCCCCGACCGCACTAAGATAAGGAGTTCCATCACCAAGAAGATTTTCATCATTCTCTTGAGGTTTGAAATGGATCTATATTGATGTCAAACGATCTTACCACCATTGCAGTACTCAATGGATGTGAGTTATCCATGTAAAAACACTTTAGTATCTTTTTTGTGTATGTTGATTAATGAACAAGTATTCCATTTGACAAACTCTTAATCTGTTGGCTGGGACAAAATTTTGTCTTGCCAAGATCTTTCATTTAAAATTCTTTTTTCAGACACTCAACAGCTTCTAAAAGCTCTTTACGAGTGCCAATAATGTTCAAATCATCAACATACACAGCTATTATAACAAATTCAAACCCCGACCATTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCTTTCCTGATTGTTTCAATCTATAAAGAGATTTCTGAAGCTTTATTGAACAGGTTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGTGTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAATGTCCATTAGACACATTTCATGTTTTTCATGAACTGCCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTCGAGAATATGTCTCCATTTAATCAATTCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTAGGTCCTTATATCTCATGACTTCAACTTTATCATTTCTTTTTTAGTACAAAAATCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATTGGTCCAAAAACTTTAGGATTTTCTAGTGAAGTCAATTCAGCTTGAATTGCATCCTTCCATTTTGGTCAATCTTTTCTCTGTCTACATTCGTGAACATATTTTAGCTCAAAATCTTCATCTTGTTGCATTATGTA</gDNA_template>
            <first_frame> S  P  F   : N  I  L  Y  N  G  F  T  T  L  P  L  G  Y  P  *  :  K  K  E  Y  T  Y  L  I  I  R  F  E  C  C  L  V  K  N  L  T  R  K  T  Q  L  G  T  K  P  *  L  R  K  R  V  Y  A  Y  P  P  P  R  *  K  L  Y  L  I  S  R  R  R  R  I  P  I  L  Y  L  N  F  S  N  V  D  V  G  N  A  L  V  S  K  S  A  R  L  S  L  E  *  I  Y  *  T  S  I  S  P  F  C  *  R  S  C  V  K  M  N  F  G  E  I  C  F  V  *  S  P  L  M  Y  P  P  F  N  *  V  I  H  A  A  L  S  S  Y  I  V  V  G  I  F  F  F  K  E  K  P  H  I  S  *  I  *  W  V  I  D  L  N  Q  M  H  S  R  F  A  S  *  M  A  I  I  S  A  *  F  E  E  V  A  T  K  V  C  F  I  D  R  Q  D  I  A  M  S  P  H  V  S  K  *  P  V  C  D  R  S  L  C  G  *  D  K  Y  L  A  S  A  *  P  I  S  S  D  L  D  S  L  E  *  N  R  P  M  S  M  V  P  R  R  Y  G  S  M  C  L  T  P  F  Q  C  L  F  V  G  E  E  L  N  L  A  S  R  L  T  A  K  Q  I  S  G  R  V  L  I  A  R  Y  I  S  A  P  T  A  L  R  *  G  V  P  S  P  R  R  F  S  S  F  S  *  G  L  K  W  I  Y  I  D  V  K  R  S  Y  H  H  C  S  T  Q  W  M  *  V  I  H  V  K  T  L  *  Y  L  F  C  V  C  *  L  M  N  K  Y  S  I  *  Q  T  L  N  L  L  A  G  T  K  F  C  L  A  K  I  F  H  L  K  F  F  F  Q  T  L  N  S  F  *  K  L  F  T  S  A  N  N  V  Q  I  I  N  I  H  S  Y  Y  N  K  F  K  P  R  P  F  N  E  N  A  G  T  N  R  V  I  F  V  P  F  L  *  Q  I  F  T  Q  T  I  V  P  H  L  S  *  L  F  Q  S  I  K  R  F  L  K  L  Y  *  T  G  F  S  *  I  F  V  C  F  R  H  F  E  C  V  R  N  F  H  E  N  V  V  V  Q  *  A  I  *  I  G  C  D  N  V  H  *  T  H  F  M  F  F  M  N  C  Q  I  Y  E  I  S  E  G  D  C  I  Y  H  S  R  I  C  L  H  L  I  N  S  R  S  L  R  K  T  L  S  N  E  *  V  L  I  S  H  D  F  N  F  I  I  S  F  L  V  Q  K  S  I  C  T  P  L  A  *  Y  L  Q  V  F  G  L  L  V  Q  K  L  *  D  F  L  V  K  S  I  Q  L  E  L  H  P  S  I  L  V  N  L  F  S  V  Y  I  R  E  H  I  L  A  Q  N  L  H  L  V  A  L  C  </first_frame>
            <second_frame>  V  L  L  :  I  Y  Y  T  M  D  L  Q  H  S  P  L  D  I  H  R :   K  K  S  T  H  I  S  *  Y  A  L  N  V  A  S  L  K  T  L  P  G  K  P  N  L  V  Q  N  H  S  *  G  K  E  Y  T  H  I  P  P  P  D  E  N  F  T  *  Y  L  G  D  G  A  S  Q  S  C  I  S  T  S  Q  T  L  M  L  E  M  P  *  *  V  N  Q  Q  D  Y  H  L  N  E  F  I  E  L  L  F  H  H  F  V  E  D  H  A  *  K  *  T  L  V  R  Y  A  L  S  D  L  L  *  C  I  L  L  S  I  E  L  Y  M  L  L  Y  L  R  I  L  W  L  V  Y  S  F  S  K  K  N  H  T  F  P  E  Y  D  G  S  L  I  S  T  R  C  T  L  D  L  L  H  R  W  L  L  F  L  H  D  L  K  K  W  L  Q  K  F  A  S  L  I  A  K  I  L  P  C  L  H  M  *  A  N  S  L  F  V  I  D  L  Y  V  D  K  I  N  T  L  H  L  R  N  Q  S  V  L  T  W  I  H  W  N  R  I  D  P  C  P  W  S  L  E  D  M  E  V  C  V  *  H  H  S  N  V  F  L  L  G  R  S  *  I  L  P  A  D  L  L  Q  N  R  Y  L  V  E  Y  *  *  Q  G  T  L  V  P  R  P  H  *  D  K  E  F  H  H  Q  E  D  F  H  H  S  L  E  V  *  N  G  S  I  L  M  S  N  D  L  T  T  I  A  V  L  N  G  C  E  L  S  M  *  K  H  F  S  I  F  F  V  Y  V  D  *  *  T  S  I  P  F  D  K  L  L  I  C  W  L  G  Q  N  F  V  L  P  R  S  F  I  *  N  S  F  F  R  H  S  T  A  S  K  S  S  L  R  V  P  I  M  F  K  S  S  T  Y  T  A  I  I  T  N  S  N  P  D  H  L  M  K  M  Q  G  Q  I  G  S  F  L  Y  P  F  F  N  K  Y  S  L  R  R  L  Y  H  I  F  P  D  C  F  N  L  *  R  D  F  *  S  F  I  E  Q  V  S  L  E  S  L  Y  A  S  G  T  L  N  V  S  G  I  F  M  K  M  L  W  S  N  E  P  Y  R  *  A  V  T  M  S  I  R  H  I  S  C  F  S  *  T  A  R  F  M  R  Y  L  K  V  I  A  S  T  T  R  E  Y  V  S  I  *  S  I  P  G  L  *  E  K  P  *  A  T  S  R  S  L  Y  L  M  T  S  T  L  S  F  L  F  *  Y  K  N  P  F  V  P  H  W  L  D  T  F  R  C  S  D  Y  W  S  K  N  F  R  I  F  *  *  S  Q  F  S  L  N  C  I  L  P  F  W  S  I  F  S  L  S  T  F  V  N  I  F  *  L  K  I  F  I  L  L  H  Y  V </second_frame>
            <third_frame>   S  F  * :   Y  T  I  Q  W  I  Y  N  T  P  P  W  I  S  I   : E  K  R  V  H  I  S  H  N  T  L  *  M  L  P  R  *  K  P  Y  Q  E  N  P  T  W  Y  K  T  I  V  K  E  K  S  I  R  I  S  P  P  P  M  K  T  L  L  D  I  S  E  T  A  H  P  N  L  V  S  Q  L  L  K  R  *  C  W  K  C  L  S  E  *  I  S  K  I  I  T  *  M  N  L  L  N  F  Y  F  T  I  L  L  K  I  M  R  E  N  E  L  W  *  D  M  L  C  L  I  S  F  D  V  S  S  F  Q  L  S  Y  T  C  C  F  I  F  V  Y  C  G  W  Y  I  L  F  Q  R  K  T  T  H  F  L  N  M  M  G  H  *  S  Q  P  D  A  L  S  I  C  F  I  D  G  Y  Y  F  C  M  I  *  R  S  G  Y  K  S  L  L  H  *  S  P  R  Y  C  H  V  S  T  C  K  Q  I  A  C  L  *  S  I  F  M  W  I  R  *  I  P  C  I  C  V  T  N  Q  F  *  L  G  F  I  G  I  E  *  T  H  V  H  G  P  S  K  I  W  K  Y  V  F  N  T  I  P  M  S  F  C  W  G  G  A  E  S  C  Q  Q  T  Y  C  K  T  D  I  W  S  S  I  D  S  K  V  H  *  C  P  D  R  T  K  I  R  S  S  I  T  K  K  I  F  I  I  L  L  R  F  E  M  D  L  Y  *  C  Q  T  I  L  P  P  L  Q  Y  S  M  D  V  S  Y  P  C  K  N  T  L  V  S  F  L  C  M  L  I  N  E  Q  V  F  H  L  T  N  S  *  S  V  G  W  D  K  I  L  S  C  Q  D  L  S  F  K  I  L  F  S  D  T  Q  Q  L  L  K  A  L  Y  E  C  Q  *  C  S  N  H  Q  H  T  Q  L  L  *  Q  I  Q  T  P  T  I  *  *  K  C  R  D  K  S  G  H  F  C  T  L  S  L  T  N  I  H  S  D  D  C  T  T  S  F  L  I  V  S  I  Y  K  E  I  S  E  A  L  L  N  R  F  L  L  N  L  C  M  L  Q  A  L  *  M  C  Q  E  F  S  *  K  C  C  G  P  M  S  H  I  D  R  L  *  Q  C  P  L  D  T  F  H  V  F  H  E  L  P  D  L  *  D  I  *  R  *  L  H  L  P  L  E  N  M  S  P  F  N  Q  F  Q  V  F  E  K  N  L  E  Q  R  V  G  P  Y  I  S  *  L  Q  L  Y  H  F  F  F  S  T  K  I  H  L  Y  P  T  G  L  I  P  S  G  V  R  I  I  G  P  K  T  L  G  F  S  S  E  V  N  S  A  *  I  A  S  F  H  F  G  Q  S  F  L  C  L  H  S  *  T  Y  F  S  S  K  S  S  S  C  C  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17683" stop="17450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILLSIELYMLLYLRILWLVYSFSKKNHTFPEYDGSLISTRCTLDLLHRWLLFLHDLKKWLQKFASLIAKILPCLHM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16951" stop="16739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFRHSTASKSSLRVPIMFKSSTYTAIITNSNPDHLMKMQGQIGSFLYPFFNKYSLRRLYHIFPDCFNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37282" PGL_stop="36167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37282" e_stop="36633"/>
            <exon e_start="36467" e_stop="36167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="37282" e_stop="36633" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36632" i_stop="36468" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="36467" e_stop="36167" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37282" stop="36633"/>
              <exon start="36467" stop="36167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTCAATAATTTCCTTAAGGTTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACCGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTGAAAATAATTTAATCTGTAAAACTTACCAGAATCTAGAATACTCATTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTACCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAAATTAACCTCACAGGGTAAAATGATCTTAATCAGTAGAGTATAGATATCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAGAAAATGTGTTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCTTTTCAGAATTGACACAACCATTAATGAAAGGTTACAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGACGGGAATATTTAA : AATTATCTTTCGATCGATCATTTGGCAAAGCCAAAGCCAAAGCCGAAGCCAAAGCCGAAGCGAGCGAGCGACGACGACGGTGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCAATGAGGGACTATTACCTTTTCTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACAG</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  S  I  I  S  L  R  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  E  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  P  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  N  *  P  H  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  S  T  A  G  K  Y  T  K  K  M  C  F  L  R  R  R  K  I  R  K  F  V  S  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  F  S  E  L  T  Q  P  L  M  K  G  Y  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  T  G  I  F  K :   I  I  F  R  S  I  I  W  Q  S  Q  S  Q  S  R  S  Q  S  R  S  E  R  A  T  T  T  V  R  G  G  S  L  F  P  T  L  L  I  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  Q  *  G  T  I  T  F  S  F  I  K  A  L  E  D  F  S  S  S  Q  P  F  K  F  *  T  F  Q  I  P  L  L  P  S  I  S  H  Q  F  L  L  H  T  Q  Q </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  Q  *  F  P  *  G  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  N  K  S  F  R  N  T  K  *  P  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  I  I  *  S  V  K  L  T  R  I  *  N  T  H  F  D  N  L  G  R  K  S  S  P  L  N  S  Q  Y  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  I  N  L  T  G  *  N  D  L  N  Q  *  S  I  D  I  K  N  S  T  V  S  E  S  I  P  Q  Q  E  S  T  R  R  K  C  V  F  *  E  E  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  N  H  *  *  K  V  T  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  *  R  E  Y  L   : K  L  S  F  D  R  S  F  G  K  A  K  A  K  A  E  A  K  A  E  A  S  E  R  R  R  R  C  E  G  G  P  S  F  Q  P  F  *  *  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  N  E  G  L  L  P  F  L  L  L  K  H  *  R  T  F  Q  V  P  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  P  I  N  S  C  Y  I  P  N   </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  N  N  F  L  K  V  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  R  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  *  F  N  L  *  N  L  P  E  S  R  I  L  I  L  I  I  *  E  E  N  Q  V  H  *  I  H  S  T  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  K  L  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  S  K  T  L  L  S  A  N  Q  F  H  S  R  K  V  H  E  E  N  V  F  F  K  K  K  E  D  Q  K  I  R  *  *  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  N  L  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  D  G  N  I  *  :  N  Y  L  S  I  D  H  L  A  K  P  K  P  K  P  K  P  K  P  K  R  A  S  D  D  D  G  A  R  G  V  P  L  S  N  P  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  Y  L  F  F  Y  *  S  I  R  G  L  F  K  F  P  T  F  Q  V  L  N  F  S  N  S  S  P  S  L  Y  F  P  S  I  L  A  T  Y  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36670" stop="36633"/>
                    <exon start="36467" stop="36296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQPFRTVTGIFKIIFRSIIWQSQSQSRSQSRSERATTTVRGGSLFPTLLIINRSVYLFKLSYFHFHYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37726" PGL_stop="38125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37726" e_stop="38125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="37726" e_stop="38125" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37726" stop="38125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAGATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTGTTCTCCATGATCTGATTGTTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCCTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGTCGAAAAGAAGTCGTGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> *  *  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  F  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  S  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </first_frame>
            <second_frame>  S  R  *  *  N  C  W  I  T  S  A  G  T  S  T  C  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  S  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  R  K  E  V  V  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </second_frame>
            <third_frame>   V  D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  V  L  H  D  L  I  V  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  F  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  P  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  V  E  K  K  S  C  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37728" stop="38123"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDSKTVGSQVQELQLVLHDLIVEDMVVNEAFQVAAMIEKFPPSWNDFKNYLKHKRKEMKPEDLVIRLKIEEDNRNVEKKSCKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="83509" PGL_stop="75729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83509" e_stop="83353"/>
            <exon e_start="81724" e_stop="81611"/>
            <exon e_start="81492" e_stop="81403"/>
            <exon e_start="81302" e_stop="81218"/>
            <exon e_start="80039" e_stop="79984"/>
            <exon e_start="79884" e_stop="79806"/>
            <exon e_start="79230" e_stop="79096"/>
            <exon e_start="77809" e_stop="77577"/>
            <exon e_start="76829" e_stop="76671"/>
            <exon e_start="76125" e_stop="75729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.847" e_score="0.975"/>
          <exon-intron don_prob="0.198" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.396" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="83509" e_stop="83353" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.847">
            <gDNA_intron_boundary i_start="83352" i_stop="81725" i_length="1628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81724" e_stop="81611" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.198" acc_prob="0.938">
            <gDNA_intron_boundary i_start="81610" i_stop="81493" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81492" e_stop="81403" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81402" i_stop="81303" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81302" e_stop="81218" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.396" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81217" i_stop="80040" i_length="1178"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80039" e_stop="79984" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.768">
            <gDNA_intron_boundary i_start="79983" i_stop="79885" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79884" e_stop="79806" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79805" i_stop="79231" i_length="575"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79230" e_stop="79096" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.923" acc_prob="0.994">
            <gDNA_intron_boundary i_start="79095" i_stop="77810" i_length="1286"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77809" e_stop="77577" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77576" i_stop="76830" i_length="747"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="76829" e_stop="76671" e_length="159"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76670" i_stop="76126" i_length="545"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="76125" e_stop="75729" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83509" stop="83353"/>
              <exon start="81724" stop="81611"/>
              <exon start="81492" stop="81403"/>
              <exon start="81302" stop="81218"/>
              <exon start="80039" stop="79984"/>
              <exon start="79884" stop="79806"/>
              <exon start="79230" stop="79096"/>
              <exon start="77809" stop="77577"/>
              <exon start="76829" stop="76671"/>
              <exon start="76125" stop="75729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTGTACGGTCATGTTCGCTTGTGTTTGTTGTGGTGGTGCTGCTGGCGAGAGAGAAGAAGAGGGTAGTGATGGATCTGAAAGGTACGCCGGTTGAAAATGGATACCGTATGCCTGCAGAATGGGAACCCCACTCTGGTTGTTGGATGGGTTGGCCG : GAACGTCCAGATAACTGGAGAAATAATGCAGTCCACGGTCAGCGTGCATTTGCAACTGTAGCATCTGCTATTTCAAGATTTGAATCAGTAACAGTCTGCGCTAGTGCTGCTCAG : TGGGAAAATGCACGCAGCTTGTTGCCTAAGCATATCAGGGTTGTGGAAATGAGCATCAATGATTCTTGGTTTCGTGACACTGGTCCAACT : TTCGTCATCAGAAATACCACAGCAAATGCAGAAAATGCAGTGTCAAGTGTTGCAGGGGTTGATTGGAACTTCAATAGCTGGGGTG : GTGTTGTTGAGGGCTGTTACAAAGACTGGAATCTTGACCTTCTTGTTGCAAGAAAG : ATTTTGGCAATTGAGAAGCTCCCAAAGTTTCCACATTCTATGGTTCTTGAAGGTGGAAGCATTCATGTTGATGGAGAAG : GGACTTGTCTCACAACCGAAGAGTGCCTCCTGAACAAAAACAGGAATCCCCATTTGTCTAAAGAACAGATTGAGAATGAACTAAAAGCATATCTCGGAGTCAGGAAGATTATTTGGCTGCCTCGAGGGTTGCTTG : GTGATGAGGATACAAATGGTCATATCGACAACATGTGCTGTTTTGTGAAACCTGGTGTCGTTTTGTTGTCTTGGACTGATGATGTATCTGATGAACAGTATGAAAGATCCTTTGAAGCACTCTCTATTCTTGAAAATACTTCTGATGCCAGTGGTAGAAAAATAGAAGTGATCAAACTCCATGTACCTGGGCCACTCTATATGACAGATGAGGAAGCAGCTGGAATAGTTCAG : GATGGCGAAGCTAAACCTAGGCCTTCAGGTACAAGGCTTGCTGCTTCTTATGTAAACTTCTACATTGCTAATGGTGCAATTATTACTCCGCAATTTGGGGATAAAAAATGGGATGAAGAAGCTATTAGAGTCCTCTCACTGGCATTTCCAAATCATGAG : GTTGTAGGAATTGAAGGTGCTAGGGAAATTGTACTAGCAGGTGGAAATATACATTGTATCACACAACAGCAGCCAACCGGCCCAGAATAATTACCCAAGGTTAGAAATGGGATTCCATGTCTTAGCAGAGGGATAACAAGATTTGCATGTACAAGTGATAACATGGAATTCTTCATGATCACACGTGCAAAACTTTAGTTTCTGTATTTGCTTCTTCGTTCGAAATTCTGGAGTGCCAAAATAATGTCTGGGTCCAGGTCAAAGTAAGATTTTTTGGTTAAAGCTTTAGATTTCAATAGTATTACGTTTGATCAAACTTGTATTCAGGCTTCTATCTACGCTCCCTGGTTCATTTTTACACCATGAAATGAACGAGTTGCATGTGCAAATGTTTCTT</gDNA_template>
            <first_frame> Q  C  T  V  M  F  A  C  V  C  C  G  G  A  A  G  E  R  E  E  E  G  S  D  G  S  E  R  Y  A  G  *  K  W  I  P  Y  A  C  R  M  G  T  P  L  W  L  L  D  G  L  A   : G  T  S  R  *  L  E  K  *  C  S  P  R  S  A  C  I  C  N  C  S  I  C  Y  F  K  I  *  I  S  N  S  L  R  *  C  C  S   : V  G  K  C  T  Q  L  V  A  *  A  Y  Q  G  C  G  N  E  H  Q  *  F  L  V  S  *  H  W  S  N   : F  R  H  Q  K  Y  H  S  K  C  R  K  C  S  V  K  C  C  R  G  *  L  E  L  Q  *  L  G  W :   C  C  *  G  L  L  Q  R  L  E  S  *  P  S  C  C  K  K   : D  F  G  N  *  E  A  P  K  V  S  T  F  Y  G  S  *  R  W  K  H  S  C  *  W  R  R :   D  L  S  H  N  R  R  V  P  P  E  Q  K  Q  E  S  P  F  V  *  R  T  D  *  E  *  T  K  S  I  S  R  S  Q  E  D  Y  L  A  A  S  R  V  A  W :   *  *  G  Y  K  W  S  Y  R  Q  H  V  L  F  C  E  T  W  C  R  F  V  V  L  D  *  *  C  I  *  *  T  V  *  K  I  L  *  S  T  L  Y  S  *  K  Y  F  *  C  Q  W  *  K  N  R  S  D  Q  T  P  C  T  W  A  T  L  Y  D  R  *  G  S  S  W  N  S  S   : G  W  R  S  *  T  *  A  F  R  Y  K  A  C  C  F  L  C  K  L  L  H  C  *  W  C  N  Y  Y  S  A  I  W  G  *  K  M  G  *  R  S  Y  *  S  P  L  T  G  I  S  K  S  *   : G  C  R  N  *  R  C  *  G  N  C  T  S  R  W  K  Y  T  L  Y  H  T  T  A  A  N  R  P  R  I  I  T  Q  G  *  K  W  D  S  M  S  *  Q  R  D  N  K  I  C  M  Y  K  *  *  H  G  I  L  H  D  H  T  C  K  T  L  V  S  V  F  A  S  S  F  E  I  L  E  C  Q  N  N  V  W  V  Q  V  K  V  R  F  F  G  *  S  F  R  F  Q  *  Y  Y  V  *  S  N  L  Y  S  G  F  Y  L  R  S  L  V  H  F  Y  T  M  K  *  T  S  C  M  C  K  C  F   </first_frame>
            <second_frame>  S  V  R  S  C  S  L  V  F  V  V  V  V  L  L  A  R  E  K  K  R  V  V  M  D  L  K  G  T  P  V  E  N  G  Y  R  M  P  A  E  W  E  P  H  S  G  C  W  M  G  W  P  :  E  R  P  D  N  W  R  N  N  A  V  H  G  Q  R  A  F  A  T  V  A  S  A  I  S  R  F  E  S  V  T  V  C  A  S  A  A  Q  :  W  E  N  A  R  S  L  L  P  K  H  I  R  V  V  E  M  S  I  N  D  S  W  F  R  D  T  G  P  T  :  F  V  I  R  N  T  T  A  N  A  E  N  A  V  S  S  V  A  G  V  D  W  N  F  N  S  W  G   : G  V  V  E  G  C  Y  K  D  W  N  L  D  L  L  V  A  R  K  :  I  L  A  I  E  K  L  P  K  F  P  H  S  M  V  L  E  G  G  S  I  H  V  D  G  E   : G  T  C  L  T  T  E  E  C  L  L  N  K  N  R  N  P  H  L  S  K  E  Q  I  E  N  E  L  K  A  Y  L  G  V  R  K  I  I  W  L  P  R  G  L  L   : G  D  E  D  T  N  G  H  I  D  N  M  C  C  F  V  K  P  G  V  V  L  L  S  W  T  D  D  V  S  D  E  Q  Y  E  R  S  F  E  A  L  S  I  L  E  N  T  S  D  A  S  G  R  K  I  E  V  I  K  L  H  V  P  G  P  L  Y  M  T  D  E  E  A  A  G  I  V  Q  :  D  G  E  A  K  P  R  P  S  G  T  R  L  A  A  S  Y  V  N  F  Y  I  A  N  G  A  I  I  T  P  Q  F  G  D  K  K  W  D  E  E  A  I  R  V  L  S  L  A  F  P  N  H  E  :  V  V  G  I  E  G  A  R  E  I  V  L  A  G  G  N  I  H  C  I  T  Q  Q  Q  P  T  G  P  E  *  L  P  K  V  R  N  G  I  P  C  L  S  R  G  I  T  R  F  A  C  T  S  D  N  M  E  F  F  M  I  T  R  A  K  L  *  F  L  Y  L  L  L  R  S  K  F  W  S  A  K  I  M  S  G  S  R  S  K  *  D  F  L  V  K  A  L  D  F  N  S  I  T  F  D  Q  T  C  I  Q  A  S  I  Y  A  P  W  F  I  F  T  P  *  N  E  R  V  A  C  A  N  V  S  </second_frame>
            <third_frame>   V  Y  G  H  V  R  L  C  L  L  W  W  C  C  W  R  E  R  R  R  G  *  *  W  I  *  K  V  R  R  L  K  M  D  T  V  C  L  Q  N  G  N  P  T  L  V  V  G  W  V  G  R :   N  V  Q  I  T  G  E  I  M  Q  S  T  V  S  V  H  L  Q  L  *  H  L  L  F  Q  D  L  N  Q  *  Q  S  A  L  V  L  L  S :   G  K  M  H  A  A  C  C  L  S  I  S  G  L  W  K  *  A  S  M  I  L  G  F  V  T  L  V  Q  L :   S  S  S  E  I  P  Q  Q  M  Q  K  M  Q  C  Q  V  L  Q  G  L  I  G  T  S  I  A  G  V  :  V  L  L  R  A  V  T  K  T  G  I  L  T  F  L  L  Q  E  R :   F  W  Q  L  R  S  S  Q  S  F  H  I  L  W  F  L  K  V  E  A  F  M  L  M  E  K  :  G  L  V  S  Q  P  K  S  A  S  *  T  K  T  G  I  P  I  C  L  K  N  R  L  R  M  N  *  K  H  I  S  E  S  G  R  L  F  G  C  L  E  G  C  L  :  V  M  R  I  Q  M  V  I  S  T  T  C  A  V  L  *  N  L  V  S  F  C  C  L  G  L  M  M  Y  L  M  N  S  M  K  D  P  L  K  H  S  L  F  L  K  I  L  L  M  P  V  V  E  K  *  K  *  S  N  S  M  Y  L  G  H  S  I  *  Q  M  R  K  Q  L  E  *  F  R :   M  A  K  L  N  L  G  L  Q  V  Q  G  L  L  L  L  M  *  T  S  T  L  L  M  V  Q  L  L  L  R  N  L  G  I  K  N  G  M  K  K  L  L  E  S  S  H  W  H  F  Q  I  M  R :   L  *  E  L  K  V  L  G  K  L  Y  *  Q  V  E  I  Y  I  V  S  H  N  S  S  Q  P  A  Q  N  N  Y  P  R  L  E  M  G  F  H  V  L  A  E  G  *  Q  D  L  H  V  Q  V  I  T  W  N  S  S  *  S  H  V  Q  N  F  S  F  C  I  C  F  F  V  R  N  S  G  V  P  K  *  C  L  G  P  G  Q  S  K  I  F  W  L  K  L  *  I  S  I  V  L  R  L  I  K  L  V  F  R  L  L  S  T  L  P  G  S  F  L  H  H  E  M  N  E  L  H  V  Q  M  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0128K09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83508" stop="83353"/>
                    <exon start="81724" stop="81611"/>
                    <exon start="81492" stop="81403"/>
                    <exon start="81302" stop="81218"/>
                    <exon start="80039" stop="79984"/>
                    <exon start="79884" stop="79806"/>
                    <exon start="79230" stop="79096"/>
                    <exon start="77809" stop="77577"/>
                    <exon start="76829" stop="76671"/>
                    <exon start="76125" stop="76036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVRSCSLVFVVVVLLAREKKRVVMDLKGTPVENGYRMPAEWEPHSGCWMGWPERPDNWRNNAVHGQRAFATVASAISRFESVTVCASAAQWENARSLLPKHIRVVEMSINDSWFRDTGPTFVIRNTTANAENAVSSVAGVDWNFNSWGGVVEGCYKDWNLDLLVARKILAIEKLPKFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKEQIENELKAYLGVRKIIWLPRGLLGDEDTNGHIDNMCCFVKPGVVLLSWTDDVSDEQYERSFEALSILENTSDASGRKIEVIKLHVPGPLYMTDEEAAGIVQDGEAKPRPSGTRLAASYVNFYIANGAIITPQFGDKKWDEEAIRVLSLAFPNHEVVGIEGAREIVLAGGNIHCITQQQPTGPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 19336 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2148 bytes was the average size of a spliced alignment
$ 15320 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1702 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 19:58:14
-->
