<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 08:27:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="+" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="27366" stop="28452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27666" g_stop="28152" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27666" e_stop="28152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACGTCTCCAGCCCGATCCATTTTGGGTCCTTCCCGGCCACCCCCGAATAACCACCGCCCATGCCACCCCCCAATACTCATCCCATGTTAACCCCGTGGCAAAGTAGGTATTTTTAAATCCAAAACCTTTCAGGCTACCATAATACCAAATACACCCCTTCTCGATAGTGAACCAATAACCTACTCTGTTGCCTCAAAAAATGGTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGTACCCATTAGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGTTAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGAGCTTGATTACTCCAGGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAA-CCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="+" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="27793" stop="28692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28093" g_stop="28392" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="+" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28093" e_stop="28392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGAGCTTGATTACTCCAGGACATTCAGTCCTGTTATTTGGCAGGAAACCATTCG-CTGGTACTGTCACTCACCGTGCGCAACAATTGGCTCATAAATCAGTTGGATGTTTCCAATGTTTTTCTTCATGTTATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTTAACATGTTTGCAAACTCCATAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346225" ref_strand="+" ref_description="SGN-U346225        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWIM zinc finger family protein, contains Pfam profile PF04434: SWIM zinc finger | chr2:3037410-3042857 REVERSE | Aliases: T13E11.9, T13E11_9(evalue: 1e-07, score=53.9) genbank/nr: gi|37534718|ref|NP_921661.1| putative mutator-like transposase [Oryza sativa (japonica cultivar-group)] gi|31432298|gb|AAP53948.1| putative mutator-like transposase [Oryza sativa (japonica cultivar-group)](evalue: 1e-25, score=120)">
      <seq>tccaatggaaataatggtattgaatacaaatgtaacaagatcaatgcagtgcaacattgaatggaatggtgatgttggatttgaaatgttagaaggggtatacaagcatactgtgaacttgggtcaacaaaaatgtagttgaagatcatgggaattaaaaggtatcccatgtgcacatggtatagcagcaatgaactacttgaacatggatgcatcacaagcaatatctagttcgtatagaaaagacacaaatatgaagacatattctcatttcattcaaccagtcccaaacatggaaatgtggcctgaaagtagaaacccaatggttaaaccacctaaggcaagacaaatgcctggtaggtcaccaaagaatagaagaagagaaattggtgaagtgagaaaagctggaaagttgccaagaatggggacactaatgacatattcactttgcaaaggaccaaatcataacaagagaaattgtccaaaaaatcctaaacctatgtctacaccaacacccactcaagagtccaccactggaaaaaaagtggtagaggttattatgaaagaacaagcactagtaagacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="-" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="55602" stop="54471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55302" g_stop="54776" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54775" i_stop="54687" i_length="89">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54686" g_stop="54624" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="588" r_length="62" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="-" ref_id="SGN-U346225" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55302" e_stop="54776"/>
          <exon e_start="54686" e_stop="54624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGCGAACTTGGGTCAACAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACAAGCTATAGCAGCAATGAACCACTTGAACATGGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATATGGCCTGAAAGTAGAAACCCAATGGTTGAACCACCTGAGGCAAGACAAATGCCTGGTAGGCCACCAAAGAACTAAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAATTGCCAACAATGGGGACAATAATGATATGTTCACTTCGCAAAGGACCAAATCATAACAAGAGAAATGGTCTAAAAAATTTCTAAACCTAAGTCTACACTAACACCCACTCAAGAGGTACATTTATATTGATTTGCTTTTATAAATTGTGTTAGATTACTTATTAAATTTAATGTCTTGTTATGTTCTTTTTGCACTCATATTAGTACACCACTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAGCAAGCACCAGTAAGAGTGGT</genome_strand>
        <mrna_strand>TCCAATGGAAATAATGGTATTGAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAATGTTAGAAGGGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAGTTGAAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAACTACTTGAACATGGATGCATCACAAGCAATATCTAGTTCGTATAGAAAAGACACAAATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGTAGAAACCCAATGGTTAAACCACCTAAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAATAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAGTTGCCAAGAATGGGGACACTAATGACATATTCACTTTGCAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAA-TCCTAAACCTATGTCTACACCAACACCCACTCAAGAG.........................................................................................TCCACCACTGGAAAAAA-AGTGGTAGAGGTTATTATGAAAGAACAAGCACTAGTAAGACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="+" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="61700" stop="62836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62000" g_stop="62539" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="+" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62000" e_stop="62539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGGAACCCCGTGCAATCGAACAATTTCTGCGATATAAAGTTTGACTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTCAATCTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAAACACGAACCCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTTTCTTAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGTTGACAATTCGGGCATTGAGCAACGAAATCAACAATGCCACGCTTCATCCTACTCCACC-AAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTTTGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTATTCCTCAAAACACCTTCCTCATCGATTTTTGCTTTAG</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATT-CTCAAAACACCTTCCTCATCGATTTTTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="-" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="64820" stop="63560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64520" g_stop="63860" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="-" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64520" e_stop="63860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGTTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGCCTTGTGACTTTTGTGGGGAACAATACTCATGTAGACTTTGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAATTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTAGCATCTCATTTCTTTGTGCTAAGAGAATGATTAGTAAAGGGTTTTTAGATTTCTTGGCACACCTGAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCATGAGTTTCTGGATGTGTTTCCTGCAGACCTTTCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCAGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGCGCTTCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="+" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="63920" stop="64850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64220" g_stop="64550" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64220" e_stop="64550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAATTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGACAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACAAAGTCTACATGAGTATTGTTCCCCACAAAAGTCACAAGGCAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAACCAGGATCAAATAATACAGAAGCTGTGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="-" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="66085" stop="64830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65785" g_stop="65130" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="-" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65785" e_stop="65130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATTAAGGACAGACACCTCCTGTGTTTTCTTCACCAGTACCTCAGGTTCCGGGAGAACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTTGATTGACTACAGGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGATGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTGGAACGATTCGGTTTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCAATCGTATGTTGAGTGTCAACCAGCACAGGCACCATCCATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAAAAGTATATACCCCAGACTTTGAGGGATAGGAAGAGAGATGAGTTCCCGAGCCTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGCTTCAGTCTACAAGACCGGATTCGCCGTTTTGTGTAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346388" ref_strand="+" ref_description="SGN-U346388        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgggccatggggaaggtgttcgttttaatttgatttatgagttattagctttcatagattgttaaaacagaccgtgtgaatatcagattacccttagatttgtcacatttaattcctcccattcacacccccaccctacccagaataaaagaaaggaaagaagtgaacagaaaacataaaatgttagatgacaatctaatacgagggttctgataaacctagactaaaacagaggacatcaccttttttccttttagaaaattaactttggaactaaaattaatgaaatcagcttatcatataagacaagcatttccacaccttgataatattttattttacttttgagaatggtaaagctgtattcatctgcaatgagggaacgctcacaaccaaacaaaaattacaaggcaagtaatcatgaatacaaagagcctaggaaatctactaactgatctacttcatataaaccctccctcttctttacaccttgacaatactttcacaagagctctgacttgaatcctaactaggtagacgcctaggatctgaggtaaaaattgactttatgaatcaaagcgaacttttcttacagcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132P07-mcfdn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132P07.1" temp_strand="-" temp_description="C00SLm0132P07.1  CU369566.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0132P07 sequenced_by:sanger upload_account_name:uk">
        <position start="86082" stop="84895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85782" g_stop="85195" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132P07.1" gen_strand="-" ref_id="SGN-U346388" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85782" e_stop="85195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCCATGGGGAAGGTGTTCGTTTTAATTTGATTTATGAGTTATTAGCTTTCATAGATTGTTAAAACAGACCGTGTGAATATCAGATTTGTACCCTTAGATTTGTCACATTTAATTCCTCCCATTCACACCCCCACCCTACCCAGAATAAAAGAAAGGAAAGAAGTGAACAGAAAACATAAAATGTTAGATGACAATCTAATACGAGGGTTCTGATAAACCTAGACTAAAACAGAGGACATCACCTTTTTTCCTTTTAGAAAATTAACTTTGGAACTAAAATTAATGAAATCAGCTTATCATATAAGACAAGCATTTCCACACCTTGATAATAATTTATTTTACTTTTGAGAATGGTAAAGCTGTACTCATCCGCAATGAGGGAAC-CTCGCAACCAAACAAAAATTACAAGGCAAGTAATCATGAATACAAAGAGCCTAGGAAATCTACTAACTGATCTACTTCATATAAACCCTCCCTCTTCTTTACACCTTGACAATACTTTCACAAGAGCTCTGACTTGAATCCTAACTAGGTAGACGCCTAGGATCTGAGGTAAAAATTGACTTTATGAATCAAAGCGAACTT</genome_strand>
        <mrna_strand>TGGGCCATGGGGAAGGTGTTCGTTTTAATTTGATTTATGAGTTATTAGCTTTCATAGATTGTTAAAACAGACCGTGTGAATATCAGA--T-TACCCTTAGATTTGTCACATTTAATTCCTCCCATTCACACCCCCACCCTACCCAGAATAAAAGAAAGGAAAGAAGTGAACAGAAAACATAAAATGTTAGATGACAATCTAATACGAGGGTTCTGATAAACCTAGACTAAAACAGAGGACATCACCTTTTTTCCTTTTAGAAAATTAACTTTGGAACTAAAATTAATGAAATCAGCTTATCATATAAGACAAGCATTTCCACACCTTGATAATATTTTATTTTACTTTTGAGAATGGTAAAGCTGTATTCATCTGCAATGAGGGAACGCTCACAACCAAACAAAAATTACAAGGCAAGTAATCATGAATACAAAGAGCCTAGGAAATCTACTAACTGATCTACTTCATATAAACCCTCCCTCTTCTTTACACCTTGACAATACTTTCACAAGAGCTCTGACTTGAATCCTAACTAGGTAGACGCCTAGGATCTGAGGTAAAAATTGACTTTATGAATCAAAGCGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="27666" PGL_stop="28392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27666" e_stop="28392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="27666" e_stop="28392" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27666" stop="28152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28093" stop="28392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACGTCTCCAGCCCGATCCATTTTGGGTCCTTCCCGGCCACCCCCGAATAACCACCGCCCATGCCACCCCCCAATACTCATCCCATGTTAACCCCGTGGCAAAGTAGGTATTTTTAAATCCAAAACCTTTCAGGCTACCATAATACCAAATACACCCCTTCTCGATAGTGAACCAATAACCTACTCTGTTGCCTCAAAAAATGGTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGTACCCATTAGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGTTAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGAGCTTGATTACTCCAGGACATTCAGTCCTGTTATTTGGCAGGAAACCATTCGCTGGTACTGTCACTCACCGTGCGCAACAATTGGCTCATAAATCAGTTGGATGTTTCCAATGTTTTTCTTCATGTTATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTTAACATGTTTGCAAACTCCATAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  R  P  P  P  N  N  H  R  P  C  H  P  P  I  L  I  P  C  *  P  R  G  K  V  G  I  F  K  S  K  T  F  Q  A  T  I  I  P  N  T  P  L  L  D  S  E  P  I  T  Y  S  V  A  S  K  N  G  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  Y  P  L  G  C  K  W  V  Y  K  I  K  H  N  A  D  V  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  E  L  D  Y  S  R  T  F  S  P  V  I  W  Q  E  T  I  R  W  Y  C  H  S  P  C  A  T  I  G  S  *  I  S  W  M  F  P  M  F  F  F  M  L  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  I  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  R  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  T  T  A  H  A  T  P  Q  Y  S  S  H  V  N  P  V  A  K  *  V  F  L  N  P  K  P  F  R  L  P  *  Y  Q  I  H  P  F  S  I  V  N  Q  *  P  T  L  L  P  Q  K  M  V  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  H  *  A  V  N  G  C  T  K  L  N  T  M  Q  M  L  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  S  L  I  T  P  G  H  S  V  L  L  F  G  R  K  P  F  A  G  T  V  T  H  R  A  Q  Q  L  A  H  K  S  V  G  C  F  Q  C  F  S  S  C  Y  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  L  T  C  L  Q  T  P  *  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  V  S  S  P  I  H  F  G  S  F  P  A  T  P  E  *  P  P  P  M  P  P  P  N  T  H  P  M  L  T  P  W  Q  S  R  Y  F  *  I  Q  N  L  S  G  Y  H  N  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  W  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  V  P  I  R  L  *  M  G  V  Q  N  *  T  Q  C  R  C  *  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  *  A  *  L  L  Q  D  I  Q  S  C  Y  L  A  G  N  H  S  L  V  L  S  L  T  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  V  F  L  H  V  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  *  H  V  C  K  L  H  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27822" stop="28217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRGKVGIFKSKTFQATIIPNTPLLDSEPITYSVASKNGYWRHAMDDEFKALTDQKTWVLVPKPHGRYPLGCKWVYKIKHNADVSISRYKARLVAKGYNQEYELDYSRTFSPVIWQETIRWYCHSPCATIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="55302" PGL_stop="54624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55302" e_stop="54776"/>
            <exon e_start="54686" e_stop="54624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="0.943"/>
          <exon-only e_score="0.873"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="55302" e_stop="54776" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54775" i_stop="54687" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.873">
            <gDNA_exon_boundary e_start="54686" e_stop="54624" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55302" stop="54776"/>
              <exon start="54686" stop="54624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGCGAACTTGGGTCAACAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACAAGCTATAGCAGCAATGAACCACTTGAACATGGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATATGGCCTGAAAGTAGAAACCCAATGGTTGAACCACCTGAGGCAAGACAAATGCCTGGTAGGCCACCAAAGAACTAAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAATTGCCAACAATGGGGACAATAATGATATGTTCACTTCGCAAAGGACCAAATCATAACAAGAGAAATGGTCTAAAAAATTTCTAAACCTAAGTCTACACTAACACCCACTCAAGAG : TACACCACTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAGCAAGCACCAGTAAGAGTGGT</gDNA_template>
            <first_frame> S  N  G  N  D  G  I  Q  Y  K  C  N  K  I  N  A  V  Q  H  *  M  E  W  *  C  W  I  *  S  V  R  R  G  I  Q  A  Y  C  E  L  G  S  T  K  M  *  L  Q  I  M  G  I  K  R  Y  P  M  C  T  S  Y  S  S  N  E  P  L  E  H  G  C  I  T  S  N  I  *  L  V  *  K  R  H  I  Y  E  D  I  F  S  F  H  S  T  S  P  K  H  G  N  M  A  *  K  *  K  P  N  G  *  T  T  *  G  K  T  N  A  W  *  A  T  K  E  L  K  K  R  N  W  *  S  E  K  S  W  K  I  A  N  N  G  D  N  N  D  M  F  T  S  Q  R  T  K  S  *  Q  E  K  W  S  K  K  F  L  N  L  S  L  H  *  H  P  L  K  S :   T  P  L  E  K  R  G  V  E  V  I  M  K  E  Q  A  P  V  R  V   </first_frame>
            <second_frame>  P  M  A  M  M  V  F  N  T  N  V  T  R  S  M  Q  C  N  I  E  W  N  G  D  V  G  F  E  V  L  E  G  V  Y  K  H  T  A  N  L  G  Q  Q  K  C  S  C  R  S  W  E  L  K  G  I  P  C  A  Q  A  I  A  A  M  N  H  L  N  M  D  A  S  Q  A  I  S  S  W  Y  R  K  D  T  Y  M  K  T  Y  S  H  F  I  Q  P  V  P  N  M  E  I  W  P  E  S  R  N  P  M  V  E  P  P  E  A  R  Q  M  P  G  R  P  P  K  N  *  R  R  E  I  G  E  V  R  K  A  G  K  L  P  T  M  G  T  I  M  I  C  S  L  R  K  G  P  N  H  N  K  R  N  G  L  K  N  F  *  T  *  V  Y  T  N  T  H  S  R   : V  H  H  W  K  K  E  G  *  R  S  L  *  K  S  K  H  Q  *  E  W  </second_frame>
            <third_frame>   Q  W  Q  *  W  Y  S  I  Q  M  *  Q  D  Q  C  S  A  T  L  N  G  M  V  M  L  D  L  K  C  *  K  G  Y  T  S  I  L  R  T  W  V  N  K  N  V  V  A  D  H  G  N  *  K  V  S  H  V  H  K  L  *  Q  Q  *  T  T  *  T  W  M  H  H  K  Q  Y  L  V  G  I  E  K  T  H  I  *  R  H  I  L  I  S  F  N  Q  S  Q  T  W  K  Y  G  L  K  V  E  T  Q  W  L  N  H  L  R  Q  D  K  C  L  V  G  H  Q  R  T  K  E  E  K  L  V  K  *  E  K  L  E  N  C  Q  Q  W  G  Q  *  *  Y  V  H  F  A  K  D  Q  I  I  T  R  E  M  V  *  K  I  S  K  P  K  S  T  L  T  P  T  Q  E  :  Y  T  T  G  K  K  R  G  R  G  H  Y  E  R  A  S  T  S  K  S  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55301" stop="54927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAMMVFNTNVTRSMQCNIEWNGDVGFEVLEGVYKHTANLGQQKCSCRSWELKGIPCAQAIAAMNHLNMDASQAISSWYRKDTYMKTYSHFIQPVPNMEIWPESRNPMVEPPEARQMPGRPPKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="62000" PGL_stop="62539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62000" e_stop="62539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="62000" e_stop="62539" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62000" stop="62539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGGAACCCCGTGCAATCGAACAATTTCTGCGATATAAAGTTTGACTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTCAATCTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAAACACGAACCCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTTTCTTAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGTTGACAATTCGGGCATTGAGCAACGAAATCAACAATGCCACGCTTCATCCTACTCCACCAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTTTGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTATTCCTCAAAACACCTTCCTCATCGATTTTTGCTTTAG</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  I  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  A  I  *  S  L  T  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  N  T  N  P  I  A  I  L  S  H  F  H  S  G  M  G  I  F  L  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  P  R  F  I  L  L  H  Q  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  F  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  Y  S  S  K  H  L  P  H  R  F  L  L  * </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  E  P  R  A  I  E  Q  F  L  R  Y  K  V  *  L  T  S  L  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  S  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  T  R  T  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  *  V  S  L  Q  A  S  G  V  H  T  L  P  V  D  N  S  G  I  E  Q  R  N  Q  Q  C  H  A  S  S  Y  S  T  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  L  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  I  P  Q  N  T  F  L  I  D  F  C  F   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  H  R  S  K  L  R  T  S  I  *  Y  D  G  K  W  N  P  V  Q  S  N  N  F  C  D  I  K  F  D  *  L  L  C  I  V  S  H  L  D  R  N  E  M  S  R  L  S  Q  S  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  K  H  E  P  H  C  N  S  L  P  L  P  F  R  N  G  H  F  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  E  I  N  N  A  T  L  H  P  T  P  P  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  F  L  K  T  P  S  S  S  I  F  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62113" stop="62442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCIVSHLDRNEMSRLSQSVNNYPNGVILTHCLWKTKHEPHCNSLPLPFRNGHFLKCPSRPLVFILYLLTIRALSNEINNATLHPTPPKCCFRSRYILVAPGCIEYLEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="64520" PGL_stop="63860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64520" e_stop="63860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="64520" e_stop="63860" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64520" stop="63860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGTTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGCCTTGTGACTTTTGTGGGGAACAATACTCATGTAGACTTTGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAATTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTAGCATCTCATTTCTTTGTGCTAAGAGAATGATTAGTAAAGGGTTTTTAGATTTCTTGGCACACCTGAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCATGAGTTTCTGGATGTGTTTCCTGCAGACCTTTCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCAGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGCGCTTCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  F  D  L  H  C  D  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  N  N  T  H  V  D  F  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  I  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  A  R  S  I  S  F  L  C  A  K  R  M  I  S  K  G  F  L  D  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  H  E  F  L  D  V  F  P  A  D  L  S  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  V  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  A  L  *  L  L  W  G  T  I  L  M  *  T  L  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  C  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  L  V  A  S  H  F  F  V  L  R  E  *  L  V  K  G  F  *  I  S  W  H  T  *  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  M  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  Q  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  A  L  P  L  G </second_frame>
            <third_frame>   *  S  W  F  H  I  F  I  C  I  F  L  I  C  Y  W  F  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  P  C  D  F  C  G  E  Q  Y  S  C  R  L  C  Y  P  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  V  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  *  H  L  I  S  L  C  *  E  N  D  *  *  R  V  F  R  F  L  G  T  P  E  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  G  C  V  S  C  R  P  F  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  R  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  Q  R  L  H  *  T  K  R  F  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64520" stop="63861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGFDLHCDLLDMPIRVSTPVGESVIVEKVYRSCLVTFVGNNTHVDFVILEMVDFDVILGMTWLSPNFAILDCNAKIVTLAKPGTDPLVWEGDYTSTPARSISFLCAKRMISKGFLDFLAHLRDDTTQVPSIESVSIVHEFLDVFPADLSGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLGKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="64220" PGL_stop="64550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64220" e_stop="64550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="64220" e_stop="64550" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64220" stop="64550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAATTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGACAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACAAAGTCTACATGAGTATTGTTCCCCACAAAAGTCACAAGGCAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAACCAGGATCAAATAATACAGAAGCTGTGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  T  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  G  *  Q  S  L  H  E  Y  C  S  P  Q  K  S  Q  G  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  N  H  N  V  N  Q  N  Q  *  Q  M  R  K  I  H  M  K  M  W  N  Q  D  Q  I  I  Q  K  L  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  N  F  S  I  T  I  *  D  C  K  I  W  R  Q  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  K  V  Y  M  S  I  V  P  H  K  S  H  K  A  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  T  R  I  K  *  Y  R  S  C  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  K  F  G  D  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  R  I  T  K  S  T  *  V  L  F  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  C  K  S  K  P  V  A  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  V  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64351" stop="64548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFPTKVTRQDLYTFSTITDSPTGVETRIGMSSKSQCKSKPVANEEDTYENVEPGSNNTEAVQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="65785" PGL_stop="65130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65785" e_stop="65130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="65785" e_stop="65130" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65785" stop="65130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATTAAGGACAGACACCTCCTGTGTTTTCTTCACCAGTACCTCAGGTTCCGGGAGAACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTTGATTGACTACAGGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGATGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTGGAACGATTCGGTTTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCAATCGTATGTTGAGTGTCAACCAGCACAGGCACCATCCATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAAAAGTATATACCCCAGACTTTGAGGGATAGGAAGAGAGATGAGTTCCCGAGCCTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGCTTCAGTCTACAAGACCGGATTCGCCGTTTTGTGTAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  D  R  H  L  L  C  F  L  H  Q  Y  L  R  F  R  E  N  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  D  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  M  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  W  N  D  S  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  N  R  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  S  L  A  C  L  W  K  S  I  Y  P  R  L  *  G  I  G  R  E  M  S  S  R  A  *  S  K  A  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  A  S  V  Y  K  T  G  F  A  V  L  C  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  C  L  S  *  R  V  I  *  L  R  T  D  T  S  C  V  F  F  T  S  T  S  G  S  G  R  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  L  I  D  Y  R  T  Y  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  *  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  G  T  I  R  F  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  G  T  I  H  D  L  G  I  I  L  *  L  V  Y  G  K  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  L  Q  S  T  R  P  D  S  P  F  C  V  G  I  E  V  R  F  A  D  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  *  G  Q  T  P  P  V  F  S  S  P  V  P  Q  V  P  G  E  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  *  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  D  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  F  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  Q  S  Y  V  E  C  Q  P  A  Q  A  P  S  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  Q  T  L  R  D  R  K  R  D  E  F  P  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  L  Q  D  R  I  R  R  F  V  *  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132P07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65624" stop="65172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTGPIMTSDQHELFSKFLKLKPPVFKGDESEDAYDFLVDCHELLHKMDIVERFGFEFVTYQFQGNAKMWWQSYVECQPAQAPSMTWASFSSLFMEKYIPQTLRDRKRDEFPSLEQGRMSVTAYEAKFRALSRYATQLCFSLQDRIRRFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="85782" PGL_stop="85195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85782" e_stop="85195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="85782" e_stop="85195" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85782" stop="85195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGCCATGGGGAAGGTGTTCGTTTTAATTTGATTTATGAGTTATTAGCTTTCATAGATTGTTAAAACAGACCGTGTGAATATCAGATTTGTACCCTTAGATTTGTCACATTTAATTCCTCCCATTCACACCCCCACCCTACCCAGAATAAAAGAAAGGAAAGAAGTGAACAGAAAACATAAAATGTTAGATGACAATCTAATACGAGGGTTCTGATAAACCTAGACTAAAACAGAGGACATCACCTTTTTTCCTTTTAGAAAATTAACTTTGGAACTAAAATTAATGAAATCAGCTTATCATATAAGACAAGCATTTCCACACCTTGATAATAATTTATTTTACTTTTGAGAATGGTAAAGCTGTACTCATCCGCAATGAGGGAACCTCGCAACCAAACAAAAATTACAAGGCAAGTAATCATGAATACAAAGAGCCTAGGAAATCTACTAACTGATCTACTTCATATAAACCCTCCCTCTTCTTTACACCTTGACAATACTTTCACAAGAGCTCTGACTTGAATCCTAACTAGGTAGACGCCTAGGATCTGAGGTAAAAATTGACTTTATGAATCAAAGCGAACTT</gDNA_template>
            <first_frame> W  A  M  G  K  V  F  V  L  I  *  F  M  S  Y  *  L  S  *  I  V  K  T  D  R  V  N  I  R  F  V  P  L  D  L  S  H  L  I  P  P  I  H  T  P  T  L  P  R  I  K  E  R  K  E  V  N  R  K  H  K  M  L  D  D  N  L  I  R  G  F  *  *  T  *  T  K  T  E  D  I  T  F  F  P  F  R  K  L  T  L  E  L  K  L  M  K  S  A  Y  H  I  R  Q  A  F  P  H  L  D  N  N  L  F  Y  F  *  E  W  *  S  C  T  H  P  Q  *  G  N  L  A  T  K  Q  K  L  Q  G  K  *  S  *  I  Q  R  A  *  E  I  Y  *  L  I  Y  F  I  *  T  L  P  L  L  Y  T  L  T  I  L  S  Q  E  L  *  L  E  S  *  L  G  R  R  L  G  S  E  V  K  I  D  F  M  N  Q  S  E  L </first_frame>
            <second_frame>  G  P  W  G  R  C  S  F  *  F  D  L  *  V  I  S  F  H  R  L  L  K  Q  T  V  *  I  S  D  L  Y  P  *  I  C  H  I  *  F  L  P  F  T  P  P  P  Y  P  E  *  K  K  G  K  K  *  T  E  N  I  K  C  *  M  T  I  *  Y  E  G  S  D  K  P  R  L  K  Q  R  T  S  P  F  F  L  L  E  N  *  L  W  N  *  N  *  *  N  Q  L  I  I  *  D  K  H  F  H  T  L  I  I  I  Y  F  T  F  E  N  G  K  A  V  L  I  R  N  E  G  T  S  Q  P  N  K  N  Y  K  A  S  N  H  E  Y  K  E  P  R  K  S  T  N  *  S  T  S  Y  K  P  S  L  F  F  T  P  *  Q  Y  F  H  K  S  S  D  L  N  P  N  *  V  D  A  *  D  L  R  *  K  L  T  L  *  I  K  A  N   </second_frame>
            <third_frame>   G  H  G  E  G  V  R  F  N  L  I  Y  E  L  L  A  F  I  D  C  *  N  R  P  C  E  Y  Q  I  C  T  L  R  F  V  T  F  N  S  S  H  S  H  P  H  P  T  Q  N  K  R  K  E  R  S  E  Q  K  T  *  N  V  R  *  Q  S  N  T  R  V  L  I  N  L  D  *  N  R  G  H  H  L  F  S  F  *  K  I  N  F  G  T  K  I  N  E  I  S  L  S  Y  K  T  S  I  S  T  P  *  *  *  F  I  L  L  L  R  M  V  K  L  Y  S  S  A  M  R  E  P  R  N  Q  T  K  I  T  R  Q  V  I  M  N  T  K  S  L  G  N  L  L  T  D  L  L  H  I  N  P  P  S  S  L  H  L  D  N  T  F  T  R  A  L  T  *  I  L  T  R  *  T  P  R  I  *  G  K  N  *  L  Y  E  S  K  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132P07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 77 chains have been computed
$ 
$ memory statistics:
$ 16816 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2102 bytes was the average size of a spliced alignment
$ 12616 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1802 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 92 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 08:28:22
-->
