<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-30 18:58:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="13656" stop="14811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13956" g_stop="14511" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13956" e_stop="14511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGATGAGGATGGGGAGAATGAACAAGTGTAGAATGAGGAATTGCAACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGTGGCTCCCTGCATGGATGCCTAATTGTAAATAGGCATGTTTCCTTGTCTGACTATTGGGCCTATAAGGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACGGTGCTGAATCTAAGGATGCCTACGATTTTTTGGTTGACCGTCAAGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTTACTTATCAGTTTCAAGGGAACACCAAAATGTGGTGGCGGTCACACGTTGAGTGTCAACCAACAGAGGCACCACCTATCACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="15897" stop="14973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15598" g_stop="15273" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15598" e_stop="15273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTTCCAGGCTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAATCCAAGTCATAACCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACTTTTTCAACTATCACAGACTCACCTATCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTTAATTAAGACCATTAGCAAATGAGGATGATACATAAGAAAATGTGGATCCTGGATCAAACAATACAGAAGCCATACAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588586" ref_strand="+" ref_description="SGN-U588586 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6691193|gb|AAF24531.1|AC007534_12 (e_value=1e-85) F7F22.17; (*ATH) ATMG00860.1 (e_value=6e-13) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|P20825|POL2_DROME (e_value=2e-37) Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol; ">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75329" stop="73998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75029" g_stop="74298" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-U588586" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75029" e_stop="74298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAACTCTAGTACCTAGAAAATAGGAGAGAAATTTCTCAAAAGCAAAGACAACTGCGAGGAGTTCTTTCTCAAACACTGTGTAGTTCTTCTAGGCTTCATTTAGGTTTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTATTCCAATCCGGAGATATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTAACGGAATACTTTAAGACAGGATTCATCAAAAC-AAATATACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGA-ATCTCTCCGATAAAAACCTGCATGCCTAAAAAAGCTTCTCACACCTTTAACAGAGATCGGCGGGGGAAGTCTCTCTATTACCCCAACTTTAGCTCGATCAACCTCTATGCCGTTTTCTGAAATGAAATGACCCAACACAATACCCTATTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTTAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCGTCCATAAAAACCTCTATAATATCCTCCATCATGTCAGAAAATATGGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600497" ref_strand="+" ref_description="SGN-U600497 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|34761718|gb|AAQ82031.1| (e_value=3e-16) pol [Pisum sativum]; ">
      <seq>cggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76023" stop="77194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76323" g_stop="76894" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U600497" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76323" e_stop="76894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGATTTACTGCTTTTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTACAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGACCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAACGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTTATGAAGACTAAGTAATCAAGTCG-CCCAATCGTGCCGCGCCATTAAATATGGCGCTTGTTGGGAGGCGACCCAATACTTATCGTCTTTTTAATAATGGTAGCA-TTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCAAGTGATGGATACAACGACGGACCGTTGCGAATGCAATGGACCGTCGTATGCATCCATCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCAGAGAACCATCGCGCGATTAATGAAA</genome_strand>
        <mrna_strand>CGGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGAT---AC-A---A------C-AA--C---GGACCGTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98493" stop="97575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98176" g_stop="97874" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="328" r_length="303" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98176" e_stop="97874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAAAATAGAAATCAATATATACAAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCATCAAGTTCACACACGAGGACTCAAGCCTCAATACTATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAACATCTTTCAAGATTTATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTC</genome_strand>
        <mrna_strand>CAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="13591" stop="101439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98952" g_stop="101140" g_length="2189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>2189</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98952" e_stop="101140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTAGCGGCAAGAGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAG-TTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTT-GGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGT-GGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTGTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACAATTATGTAGATTTGGTTATCTTAGGAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="100756" stop="98652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100456" g_stop="98952" g_length="1505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>1505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100456" e_stop="98952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTACACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGCATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTTCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTTCCCATCACCTCGGCCATTTTTGTGACGACCATTACCTCGACCACCACGTCCTCCAGAATAACGACCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATTTCCAGTCT-CCCACATCCATAATACTCTCTAGAGTCAAACATAGGTCTCTCAAAGAAGTGTTGGCCTGTCTGAGGTGG-ACCCCAACTACAGTATGTCGTGAAGACTGAATGGGTCGGACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTTGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACATCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACGCCTTCACAAAACGACGAATCCGCTCTTGTGGACTAAAACAAAGTTGAGTGGCATATCTGAATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAAAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTTCATAAA-AAACTATAGAATGAGGCCCAAGTCATAGGTGGTGCCTTTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCGAACAGTTCTACTATACTCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTAGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGCTGATCATTTCTAATTATAGGCCTAGTAGTAAGATGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCAGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTTGAGGTGCCTGACCCTGATTAGACAACCCACTAAGATAAGCGAGCACCTTTTTTATCATCTCTAGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTTATTTTCCCCAACCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCGCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGACCTCTTGCCGCTACTCTC</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98653" stop="100674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98952" g_stop="100374" g_length="1423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>1423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98952" e_stop="100374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTAGCGGCAAGAGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAG-TTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTT-GGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGT-GGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98671" stop="100021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98970" g_stop="99721" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98970" e_stop="99721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAGTTT-TTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98683" stop="101831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98982" g_stop="99853" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99854" i_stop="100966" i_length="1113">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100967" g_stop="101531" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98982" e_stop="99853"/>
          <exon e_start="100967" e_stop="101531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAG-TTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTTGGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGTGGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTGTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACAATTATGTAGATTTGGTTATCTTAGGAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTTCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACAGGCAACGGATGCGCCAAAGACCGCTTTTAAAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGTTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATATCATTGTAATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTTTAAGCCTGAGTTTTGGCTAGATGCAGTGTCATTCATGGGGCACGTGGTTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGG-TTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="99316" stop="101350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99616" g_stop="99816" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99817" i_stop="100558" i_length="742">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.612" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100559" g_stop="101087" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99616" e_stop="99816"/>
          <exon e_start="100559" e_stop="101087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTTGGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGTGGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTGTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACAATTATGTAGATTTGGTTATCTTAGGAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT-TT-TGT-TGTA-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-hyPJR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101964" stop="15477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101660" g_stop="100847" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101660" e_stop="100847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAG-AAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13956" PGL_stop="14511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13956" e_stop="14511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="13956" e_stop="14511" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13956" stop="14511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGATGAGGATGGGGAGAATGAACAAGTGTAGAATGAGGAATTGCAACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGTGGCTCCCTGCATGGATGCCTAATTGTAAATAGGCATGTTTCCTTGTCTGACTATTGGGCCTATAAGGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACGGTGCTGAATCTAAGGATGCCTACGATTTTTTGGTTGACCGTCAAGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTTACTTATCAGTTTCAAGGGAACACCAAAATGTGGTGGCGGTCACACGTTGAGTGTCAACCAACAGAGGCACCACCTATCACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  D  E  D  G  E  N  E  Q  V  *  N  E  E  L  Q  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  V  A  P  C  M  D  A  *  L  *  I  G  M  F  P  C  L  T  I  G  P  I  R  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  N  G  A  E  S  K  D  A  Y  D  F  L  V  D  R  Q  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  T  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  I  T  W  A  S  F  </first_frame>
            <second_frame>  H  L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  E  R  M  R  M  G  R  M  N  K  C  R  M  R  N  C  N  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  N  C  K  *  A  C  F  L  V  *  L  L  G  L  *  G  Q  M  I  S  M  N  F  L  V  S  S  *  N  *  N  L  Q  S  S  T  V  L  N  L  R  M  P  T  I  F  W  L  T  V  K  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  L  L  I  S  F  K  G  T  P  K  C  G  G  G  H  T  L  S  V  N  Q  Q  R  H  H  L  S  L  G  H  H  S </second_frame>
            <third_frame>   T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  G  *  G  W  G  E  *  T  S  V  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  L  H  G  C  L  I  V  N  R  H  V  S  L  S  D  Y  W  A  Y  K  D  K  *  S  A  *  T  F  *  *  V  L  E  I  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  R  F  F  G  *  P  S  R  A  T  T  Q  D  G  Y  S  R  M  V  W  C  *  V  C  Y  L  S  V  S  R  E  H  Q  N  V  V  A  V  T  R  *  V  S  T  N  R  G  T  T  Y  H  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14223" stop="14510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGMFPCLTIGPIRTNDQHELFSKFLKLKPPVFNGAESKDAYDFLVDRQELLHKMGIVEWFGVEFVTYQFQGNTKMWWRSHVECQPTEAPPITWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15598" PGL_stop="15273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15598" e_stop="15273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="15598" e_stop="15273" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15598" stop="15273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTTCCAGGCTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAATCCAAGTCATAACCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACTTTTTCAACTATCACAGACTCACCTATCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTTAATTAAGACCATTAGCAAATGAGGATGATACATAAGAAAATGTGGATCCTGGATCAAACAATACAGAAGCCATACAATCAC</gDNA_template>
            <first_frame> R  I  C  S  R  L  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  N  P  S  H  N  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  L  I  K  T  I  S  K  *  G  *  Y  I  R  K  C  G  S  W  I  K  Q  Y  R  S  H  T  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  V  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  I  Q  V  I  T  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  I  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  *  L  R  P  L  A  N  E  D  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  </second_frame>
            <third_frame>   D  L  F  Q  A  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  S  K  S  *  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  I  L  F  Q  L  S  Q  T  H  L  S  E  *  K  H  E  *  A  C  Q  A  I  H  N  F  N  *  D  H  *  Q  M  R  M  I  H  K  K  M  W  I  L  D  Q  T  I  Q  K  P  Y  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0242B17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="75029" PGL_stop="74298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75029" e_stop="74298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="75029" e_stop="74298" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75029" stop="74298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTATAACTCTAGTACCTAGAAAATAGGAGAGAAATTTCTCAAAAGCAAAGACAACTGCGAGGAGTTCTTTCTCAAACACTGTGTAGTTCTTCTAGGCTTCATTTAGGTTTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTATTCCAATCCGGAGATATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTAACGGAATACTTTAAGACAGGATTCATCAAAACAAATATACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGAATCTCTCCGATAAAAACCTGCATGCCTAAAAAAGCTTCTCACACCTTTAACAGAGATCGGCGGGGGAAGTCTCTCTATTACCCCAACTTTAGCTCGATCAACCTCTATGCCGTTTTCTGAAATGAAATGACCCAACACAATACCCTATTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTTAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCGTCCATAAAAACCTCTATAATATCCTCCATCATGTCAGAAAATATGGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  K  I  G  E  K  F  L  K  S  K  D  N  C  E  E  F  F  L  K  H  C  V  V  L  L  G  F  I  *  V  F  T  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  S  I  T  H  Y  L  K  W  T  I  P  I  R  R  Y  N  D  R  C  R  H  *  L  L  F  *  L  T  E  Y  F  K  T  G  F  I  K  T  N  I  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  N  L  S  D  K  N  L  H  A  *  K  S  F  S  H  L  *  Q  R  S  A  G  E  V  S  L  L  P  Q  L  *  L  D  Q  P  L  C  R  F  L  K  *  N  D  P  T  Q  Y  P  I  S  P  *  N  D  T  F  P  S  L  V  P  N  C  S  L  H  I  S  *  E  P  *  I  N  W  S  S  I  A  Q  M  N  H  Q  P  Q  K  N  R  P  *  K  P  L  *  Y  P  P  S  C  Q  K  I  W  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  T  F  F </first_frame>
            <second_frame>  T  I  T  L  V  P  R  K  *  E  R  N  F  S  K  A  K  T  T  A  R  S  S  F  S  N  T  V  *  F  F  *  A  S  F  R  F  L  L  A  *  *  I  G  *  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  Q  S  G  D  I  M  I  G  A  D  T  N  F  S  F  S  *  R  N  T  L  R  Q  D  S  S  K  Q  I  Y  I  L  S  P  V  I  C  T  M  G  V  Q  S  L  K  S  L  *  I  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  N  R  D  R  R  G  K  S  L  Y  Y  P  N  F  S  S  I  N  L  Y  A  V  F  *  N  E  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  F  T  S  L  K  N  L  R  *  I  G  Q  A  S  L  K  *  I  T  N  H  R  K  I  V  H  K  N  L  Y  N  I  L  H  H  V  R  K  Y  G  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  S   </second_frame>
            <third_frame>   L  *  L  *  Y  L  E  N  R  R  E  I  S  Q  K  Q  R  Q  L  R  G  V  L  S  Q  T  L  C  S  S  S  R  L  H  L  G  F  Y  *  H  S  K  L  G  E  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  *  H  H  T  L  P  Q  M  D  Y  S  N  P  E  I  *  *  *  V  Q  T  L  T  S  L  L  A  N  G  I  L  *  D  R  I  H  Q  N  K  Y  T  F  F  L  Q  *  F  A  Q  W  V  C  N  L  *  K  V  F  E  S  L  R  *  K  P  A  C  L  K  K  L  L  T  P  L  T  E  I  G  G  G  S  L  S  I  T  P  T  L  A  R  S  T  S  M  P  F  S  E  M  K  *  P  N  T  I  P  Y  F  T  M  K  *  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  L  D  K  L  V  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  I  S  S  I  M  S  E  N  M  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  D  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0242B17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="76323" PGL_stop="76894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76323" e_stop="76894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="76323" e_stop="76894" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76323" stop="76894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGGATTTACTGCTTTTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTACAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGACCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAACGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTTATGAAGACTAAGTAATCAAGTCGCCCAATCGTGCCGCGCCATTAAATATGGCGCTTGTTGGGAGGCGACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCAAGTGATGGATACAACGACGGACCGTTGCGAATGCAATGGACCGTCGTATGCATCCATCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCAGAGAACCATCGCGCGATTAATGAAA</gDNA_template>
            <first_frame> R  G  F  T  A  F  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  T  S  *  V  G  N  *  G  G  C  A  V  Q  R  E  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  L  *  R  L  S  N  Q  V  A  Q  S  C  R  A  I  K  Y  G  A  C  W  E  A  T  Q  Y  L  S  S  F  *  *  W  *  H  F  F  Y  K  W  V  L  N  L  Q  A  H  H  Q  E  I  L  Q  K  T  T  P  Q  *  Q  V  M  D  T  T  T  D  R  C  E  C  N  G  P  S  Y  A  S  I  T  P  G  T  Y  F  C  H  F  *  N  *  G  T  H  D  G  T  Y  D  G  A  S  Q  V  R  W  T  V  V  R  E  P  S  R  D  *  *   </first_frame>
            <second_frame>  G  D  L  L  L  L  F  N  S  R  L  R  L  F  P  G  K  L  K  Y  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  P  V  E  L  E  T  K  E  G  V  R  F  N  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  A  Y  H  L  Y  E  D  *  V  I  K  S  P  N  R  A  A  P  L  N  M  A  L  V  G  R  R  P  N  T  Y  R  L  F  N  N  G  S  I  F  S  I  N  G  F  *  I  C  R  H  I  T  R  K  F  C  R  K  L  L  R  S  S  K  *  W  I  Q  R  R  T  V  A  N  A  M  D  R  R  M  H  P  S  H  Q  V  R  I  S  V  I  F  E  I  R  A  H  T  T  E  P  T  M  G  R  R  K  C  D  G  P  S  S  E  N  H  R  A  I  N  E  </second_frame>
            <third_frame>   G  I  Y  C  F  Y  S  I  P  D  C  A  C  F  Q  A  N  S  S  T  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  D  Q  L  S  W  K  L  R  R  V  C  G  S  T  *  M  D  S  A  *  K  S  I  S  G  M  L  N  R  R  M  K  *  S  R  H  T  I  F  M  K  T  K  *  S  S  R  P  I  V  P  R  H  *  I  W  R  L  L  G  G  D  P  I  L  I  V  F  L  I  M  V  A  F  F  L  *  M  G  F  K  F  A  G  T  S  P  G  N  S  A  E  N  Y  S  A  V  A  S  D  G  Y  N  D  G  P  L  R  M  Q  W  T  V  V  C  I  H  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  N  L  R  W  G  V  A  S  A  M  D  R  R  Q  R  T  I  A  R  L  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76658" stop="76894"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGFKFAGTSPGNSAENYSAVASDGYNDGPLRMQWTVVCIHHTRYVFLSFLKLGHTRRNLRWGVASAMDRRQRTIARLMK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76324" stop="76554"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLLLLFNSRLRLFPGKLKYKWTGPYTVTQLFPHGPVELETKEGVRFNVNGQRIKIYLGHAESANEVIEAYHLYED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="98176" PGL_stop="97874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98176" e_stop="97874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="98176" e_stop="97874" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98176" stop="97874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCAAAATAGAAATCAATATATACAAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCATCAAGTTCACACACGAGGACTCAAGCCTCAATACTATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAACATCTTTCAAGATTTATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTC</gDNA_template>
            <first_frame> Q  L  K  I  E  I  N  I  Y  K  V  I  S  *  N  K  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  H  Q  V  H  T  R  G  L  K  P  Q  Y  Y  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  Y  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F </first_frame>
            <second_frame>  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  I  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  F  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G   </second_frame>
            <third_frame>   T  Q  N  R  N  Q  Y  I  Q  S  N  I  I  K  *  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  T  R  T  Q  A  S  I  L  Y  S  F  G  N  Y  V  H  S  I  E  Y  I  N  I  F  Q  D  L  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98084" stop="97890"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLPSSSHTRTQASILYSFGNYVHSIEYINIFQDLLSLFLLCRYVTLRSLIFINPLVSVRDTPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="98952" PGL_stop="101531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98952" e_stop="101140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="98952" e_stop="101140" e_length="2189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98952" stop="101140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98952" stop="100374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGTAGCGGCAAGAGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAGTTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTTGGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGTGGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTGTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACAATTATGTAGATTTGGTTATCTTAGGAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</gDNA_template>
            <first_frame> E  S  S  G  K  R  S  W  *  R  S  W  E  D  V  L  *  R  K  R  T  R  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  K  G  A  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  C  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  Y  Y  *  A  Y  N  *  K  *  S  A  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  E  Y  S  R  T  V  R  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  F  F  M  K  K  Y  I  P  W  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  F  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  A  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  D  V  V  D  F  V  V  E  V  E  G  V  K  P  D  E  F  T  M  A  S  T  S  K  R  F  Q  K  G  G  E  F  N  G  S  Y  S  R  G  Q  G  S  G  G  Y  S  V  R  P  I  Q  S  S  R  H  T  V  V  G  V  H  L  R  Q  A  N  T  S  L  R  D  L  C  L  T  L  E  S  I  M  D  V  G  D  W  K  Y  *  E  E  L  S  K  T  E  L  *  T  P  N  G  *  R  *  R  W  S  W  *  R  S  L  F  W  R  T  W  W  S  R  *  W  S  S  Q  K  W  P  R  *  W  E  N  W  S  R  Y  I  T  T  W  *  G  K  W  T  D  K  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  M  H  G  F  C  I  V  *  C  W  I  H  I  F  L  C  I  F  L  I  C  *  W  C  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  E  L  C  G  E  K  Q  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  P  R  Y  D  L  A  F  S  A  I  W  D  F  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  V  Y  H  L  L  Y  S  C  *  E  N  G  *  *  T  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  L  D  *  V  G  F  G  G  P  C  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  M  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  G  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *   </first_frame>
            <second_frame>  R  V  A  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  V  G  E  N  K  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  K  K  V  L  A  Y  L  S  G  L  S  N  Q  G  Q  A  P  Q  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  H  L  T  T  R  P  I  I  R  N  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  L  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  S  I  V  E  L  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  Y  S  F  L  *  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  F  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  S  D  M  P  L  N  F  V  L  V  H  K  S  G  F  V  V  L  *  R  R  *  G  Q  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  M  W  *  I  S  W  *  R  W  K  E  *  S  Q  M  N  S  P  W  H  R  H  Q  R  G  F  K  K  E  V  S  L  M  V  L  T  L  E  D  R  V  P  E  V  T  Q  S  D  P  F  S  L  H  D  I  L  *  L  G  S  T  S  D  R  P  T  L  L  *  E  T  Y  V  *  L  *  R  V  L  W  M  W  E  T  G  N  I  R  R  N  C  P  K  Q  S  Y  R  P  P  M  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  R  G  G  R  G  N  G  R  H  K  N  G  R  G  D  G  K  T  G  A  A  T  S  Q  H  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  E  C  M  A  S  V  L  F  D  A  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  V  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  R  N  N  Y  V  D  L  V  I  L  G  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  G  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  I  S  F  I  H  A  K  K  M  V  S  K  R  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  V  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  L  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  V  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  *  R  Q  E  V  V  V  E  V  V  G  G  R  P  L  E  E  E  D  A  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  L  G  K  I  N  K  C  R  M  R  D  C  H  P  S  L  P  *  R  *  *  K  R  C  S  L  I  L  V  G  C  L  I  R  V  R  H  L  K  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  L  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  I  L  L  L  G  L  *  L  E  M  I  S  M  N  F  S  V  C  S  *  N  *  N  L  *  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  *  V  *  *  N  C  S  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  I  V  F  Y  E  E  V  Y  P  L  D  F  E  G  *  E  K  G  *  V  F  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R  C  G  R  F  R  G  R  G  G  R  S  E  A  R  *  I  H  H  G  I  D  I  K  E  V  S  K  R  R  *  V  *  W  F  L  L  *  R  T  G  F  R  R  L  L  S  P  T  H  S  V  F  T  T  Y  C  S  W  G  P  P  Q  T  G  Q  H  F  F  E  R  P  M  F  D  S  R  E  Y  Y  G  C  G  R  L  E  I  L  G  G  I  V  Q  N  R  V  I  D  P  Q  W  L  E  V  E  V  V  M  V  E  V  V  I  L  E  D  V  V  V  E  V  M  V  V  T  K  M  A  E  V  M  G  K  L  E  P  L  H  H  N  M  V  G  E  M  D  R  Q  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  N  A  W  L  L  Y  C  L  M  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  E  T  I  M  *  I  W  L  S  *  E  W  M  I  L  M  *  S  S  V  *  L  G  F  L  R  N  L  G  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  M  L  R  K  W  L  V  N  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  P  R  L  S  R  F  R  W  S  V  C  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  Y  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  R  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100045" stop="101139"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLWMWETGNIRRNCPKQSYRPPMARGRGGHGRGRYSGGRGGRGNGRHKNGRGDGKTGAATSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCECMASVLFDAGSTFSYVSSSFANGVNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGRNNYVDLVILGMDDFDVILGMTWLSPQFGILDCNAKTVTLAKPGTDPLVWEGDYTSNPVCIISFIHAKKMVSKRCLDFLAHLKDDTTQVPSIESVSVVRVFLDVFPADLPGMPPDRDIDLCIDLEPGTRPISIPPYRMAPAELREVKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98953" stop="99486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAARGRGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEVGENKQVQNEGLPPQPTLEMIKKVLAYLSGLSNQGQAPQVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPHLTTRPIIRNDQHELFSMFLKLKPLVFKGAESEDAYNFLVDCHELLHKMSIVELFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98970" e_stop="99816"/>
            <exon e_start="100559" e_stop="101087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.612" e_score="0.923"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="98970" e_stop="99816" e_length="847"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.612">
            <gDNA_intron_boundary i_start="99817" i_stop="100558" i_length="742"/>
          </intron>
          <exon e_serial="2" e_score="0.890">
            <gDNA_exon_boundary e_start="100559" e_stop="101087" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99616" stop="99816"/>
              <exon start="100559" stop="101087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAGTTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAG : GAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</gDNA_template>
            <first_frame> S  W  *  R  S  W  E  D  V  L  *  R  K  R  T  R  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  K  G  A  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  C  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  Y  Y  *  A  Y  N  *  K  *  S  A  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  E  Y  S  R  T  V  R  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  F  F  M  K  K  Y  I  P  W  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  F  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  A  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : G  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  G  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  I  S  F  I  H  A  K  K  M  V  S  K  R  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  V  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  L  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  V  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  V  G  E  N  K  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  K  K  V  L  A  Y  L  S  G  L  S  N  Q  G  Q  A  P  Q  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  H  L  T  T  R  P  I  I  R  N  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  L  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  S  I  V  E  L  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  Y  S  F  L  *  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  F  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  S  D  M  P  L  N  F  V  L  V  H  K  S  G  F  V  V  L  *  R  R  *  G  Q  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  :  E  W  M  I  L  M  *  S  S  V  *  L  G  F  L  R  N  L  G  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  M  L  R  K  W  L  V  N  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  P  R  L  S  R  F  R  W  S  V  C  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  Y  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  R  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  A  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  L  G  K  I  N  K  C  R  M  R  D  C  H  P  S  L  P  *  R  *  *  K  R  C  S  L  I  L  V  G  C  L  I  R  V  R  H  L  K  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  L  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  I  L  L  L  G  L  *  L  E  M  I  S  M  N  F  S  V  C  S  *  N  *  N  L  *  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  *  V  *  *  N  C  S  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  I  V  F  Y  E  E  V  Y  P  L  D  F  E  G  *  E  K  G  *  V  F  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  P  R  Y  D  L  A  F  S  A  I  W  D  F  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  V  Y  H  L  L  Y  S  C  *  E  N  G  *  *  T  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  L  D  *  V  G  F  G  G  P  C  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  M  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  G  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99576" stop="99816"/>
                    <exon start="100559" stop="101085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFMKKYIPWTLRDRKRDEFLSLEQGRMSVNAYEAKFRALFRYATQLCFSPQERIRRFVKALRSELRISALQVAATAKSFQGMDDFDVILGMTWLSPQFGILDCNAKTVTLAKPGTDPLVWEGDYTSNPVCIISFIHAKKMVSKRCLDFLAHLKDDTTQVPSIESVSVVRVFLDVFPADLPGMPPDRDIDLCIDLEPGTRPISIPPYRMAPAELREVKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98971" stop="99486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEVGENKQVQNEGLPPQPTLEMIKKVLAYLSGLSNQGQAPQVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPHLTTRPIIRNDQHELFSMFLKLKPLVFKGAESEDAYNFLVDCHELLHKMSIVELFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98970" e_stop="99853"/>
            <exon e_start="100967" e_stop="101531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.892"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="98970" e_stop="99853" e_length="884"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99854" i_stop="100966" i_length="1113"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="100967" e_stop="101531" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98982" stop="99853"/>
              <exon start="100967" stop="101531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGCGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGTTGGGGAAAATAAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCTAGAGATGATAAAAAAGGTGCTCGCTTATCTTAGTGGGTTGTCTAATCAGGGTCAGGCACCTCAAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCTGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACATCTTACTACTAGGCCTATAATTAGAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGAGTATAGTAGAACTGTTCGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTATAGTTTTTTATGAAGAAGTATATCCCCTGGACTTTGAGGGATAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAA : AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTTCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACAGGCAACGGATGCGCCAAAGACCGCTTTTAAAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGTTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATATCATTGTAATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTTTAAGCCTGAGTTTTGGCTAGATGCAGTGTCATTCATGGGGCACGTGGTTTTCTA</gDNA_template>
            <first_frame> S  W  *  R  S  W  E  D  V  L  *  R  K  R  T  R  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  K  G  A  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  C  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  Y  Y  *  A  Y  N  *  K  *  S  A  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  E  Y  S  R  T  V  R  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  F  F  M  K  K  Y  I  P  W  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  F  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  A  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  D  V  V  D  F  V  V  E  V  E  G  V  K :   S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  T  R  F  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  R  F  *  N  Q  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  F  D  E  R  D  F  *  A  I  F  G  Y  H  C  N  R  I  Y  *  *  Y  T  D  I  L  K  E  Q  E  R  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  A  *  V  L  A  R  C  S  V  I  H  G  A  R  G  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  V  G  E  N  K  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  K  K  V  L  A  Y  L  S  G  L  S  N  Q  G  Q  A  P  Q  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  H  L  T  T  R  P  I  I  R  N  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  L  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  S  I  V  E  L  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  Y  S  F  L  *  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  F  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  S  D  M  P  L  N  F  V  L  V  H  K  S  G  F  V  V  L  *  R  R  *  G  Q  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  M  W  *  I  S  W  *  R  W  K  E  *   : K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  S  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  Q  A  T  D  A  P  K  T  A  F  K  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  V  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  I  I  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  F  K  P  E  F  W  L  D  A  V  S  F  M  G  H  V  V  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  A  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  L  G  K  I  N  K  C  R  M  R  D  C  H  P  S  L  P  *  R  *  *  K  R  C  S  L  I  L  V  G  C  L  I  R  V  R  H  L  K  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  L  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  I  L  L  L  G  L  *  L  E  M  I  S  M  N  F  S  V  C  S  *  N  *  N  L  *  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  *  V  *  *  N  C  S  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  I  V  F  Y  E  E  V  Y  P  L  D  F  E  G  *  E  K  G  *  V  F  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R  C  G  R  F  R  G  R  G  G  R  S  E  :  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  R  Q  R  M  R  Q  R  P  L  L  K  P  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  V  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  I  Y  *  Y  T  Q  R  A  R  K  N  M  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  L  S  F  G  *  M  Q  C  H  S  W  G  T  W  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99853" stop="101529"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGSCVFSKIDLRSGYHQLKIQATDAPKTAFKTRYGHYEFVVMSFGLTNAPVAFMSLMNGIFKPYLDIIVIVFIDDILIYSKSKKEHEEHLRMVLEMLREKKLYAKFFKPEFWLDAVSFMGHVVF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98971" stop="99486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEVGENKQVQNEGLPPQPTLEMIKKVLAYLSGLSNQGQAPQVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPHLTTRPIIRNDQHELFSMFLKLKPLVFKGAESEDAYNFLVDCHELLHKMSIVELFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="100456" PGL_stop="98952"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100456" e_stop="98952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="100456" e_stop="98952" e_length="1505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100456" stop="98952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTACACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGCATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTTCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTTCCCATCACCTCGGCCATTTTTGTGACGACCATTACCTCGACCACCACGTCCTCCAGAATAACGACCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATTTCCAGTCTCCCACATCCATAATACTCTCTAGAGTCAAACATAGGTCTCTCAAAGAAGTGTTGGCCTGTCTGAGGTGGACCCCAACTACAGTATGTCGTGAAGACTGAATGGGTCGGACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTTGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACATCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACGCCTTCACAAAACGACGAATCCGCTCTTGTGGACTAAAACAAAGTTGAGTGGCATATCTGAATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAAAACTCATCCCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTTCATAAAAAACTATAGAATGAGGCCCAAGTCATAGGTGGTGCCTTTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCGAACAGTTCTACTATACTCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTAGAGGTTTCAATTTCAAGAACATACTGAAAAGTTCATGCTGATCATTTCTAATTATAGGCCTAGTAGTAAGATGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCAGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTTGAGGTGCCTGACCCTGATTAGACAACCCACTAAGATAAGCGAGCACCTTTTTTATCATCTCTAGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTTATTTTCCCCAACCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCGCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGACCTCTTGCCGCTACTCTC</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  V  I  H  N  V  N  L  H  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  H  Q  T  I  Q  K  P  C  I  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  F  P  Y  H  V  V  M  *  R  L  Q  F  S  H  H  L  G  H  F  C  D  D  H  Y  L  D  H  H  V  L  Q  N  N  D  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  F  Q  S  P  T  S  I  I  L  S  R  V  K  H  R  S  L  K  E  V  L  A  C  L  R  W  T  P  T  T  V  C  R  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  A  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  N  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  Q  G  I  Y  F  F  I  K  N  Y  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  N  N  S  R  T  Q  H  R  T  V  L  L  Y  S  S  C  V  V  A  H  D  S  Q  P  E  N  C  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  F  *  L  *  A  *  *  *  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  Q  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  *  T  T  H  *  D  K  R  A  P  F  L  S  S  L  G  *  A  G  V  A  I  P  H  S  A  L  V  Y  F  P  Q  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  R  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  D  L  L  P  L  L   </first_frame>
            <second_frame>  T  N  R  H  I  K  *  F  T  M  *  I  Y  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  S  I  K  Q  Y  R  S  H  A  F  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  S  P  T  M  L  *  C  S  G  S  S  F  P  I  T  S  A  I  F  V  T  T  I  T  S  T  T  T  S  S  R  I  T  T  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  I  S  S  L  P  H  P  *  Y  S  L  E  S  N  I  G  L  S  K  K  C  W  P  V  *  G  G  P  Q  L  Q  Y  V  V  K  T  E  W  V  G  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  L  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  H  L  G  R  I  L  P  *  L  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  *  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  K  T  H  P  F  S  Y  P  S  K  S  R  G  Y  T  S  S  *  K  T  I  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  E  Q  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  *  R  F  Q  F  Q  E  H  T  E  K  F  M  L  I  I  S  N  Y  R  P  S  S  K  M  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  S  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  L  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  F  Y  H  L  *  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  N  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  A  S  S  S  S  R  G  R  P  P  T  T  S  T  T  T  S  C  R  Y  S  </second_frame>
            <third_frame>   R  I  G  I  S  S  N  S  Q  C  K  F  T  P  L  A  N  E  E  D  T  *  E  N  V  D  P  A  S  N  N  T  E  A  M  H  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  F  P  L  P  C  C  D  V  A  A  P  V  F  P  S  P  R  P  F  L  *  R  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  F  P  V  S  H  I  H  N  T  L  *  S  Q  T  *  V  S  Q  R  S  V  G  L  S  E  V  D  P  N  Y  S  M  S  *  R  L  N  G  S  D  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  F  L  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  I  L  E  G  F  C  R  S  C  Y  L  *  G  *  N  P  Q  L  *  P  Q  R  L  H  K  T  T  N  P  L  L  W  T  K  T  K  L  S  G  I  S  E  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  K  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  K  L  *  N  E  A  Q  V  I  G  G  A  F  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  S  S  T  I  L  I  L  C  S  S  S  *  Q  S  T  R  K  L  *  A  S  S  D  S  A  P  L  K  T  R  G  F  N  F  K  N  I  L  K  S  S  C  *  S  F  L  I  I  G  L  V  V  R  C  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  *  G  A  *  P  *  L  D  N  P  L  R  *  A  S  T  F  F  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  L  F  S  P  T  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99161" stop="98952"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASTFFIISRVGWGGNPSFCTCLFSPTSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="101660" PGL_stop="100847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101660" e_stop="100847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="101660" e_stop="100847" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101660" stop="100847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  Q  T  H  *  *  V  L  P  N  S  L  L  S  Q  F  *  K  D  P  P  S  L  H  P  *  K  T  T  C  P  M  N  D  T  A  S  S  Q  N  S  G  L  K  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  M  I  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  T  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  A  S  V  A  C  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  E  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  T  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  H  K  S  I  S  L  S  G  G  I  P  G  R  S  </first_frame>
            <second_frame>  E  S  L  D  K  S  V  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  R  S  Y  P  I  L  Y  C  L  N  F  R  R  I  H  H  H  S  I  L  R  K  P  R  A  P  *  M  T  L  H  L  A  K  T  Q  A  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  L  Q  *  Y  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  R  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  N  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  P  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  I  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </second_frame>
            <third_frame>   N  P  L  T  N  R  W  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  N  H  V  P  H  E  *  H  C  I  *  P  K  L  R  L  K  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  Y  N  D  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  N  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  F  K  S  G  L  W  R  I  R  C  L  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  R  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  Y  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  *  V  N  I  P  I  W  W  H  T  R  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101394" stop="101155"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDYNDIQIWLKNPVHQTHERNRGIRKTKRHHYKFVMPIPGFKSGLWRIRCLYFQLMITGSQVNLREDTRTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101462" stop="101265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITMISKYGLKIPFIKLMNATGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 368512 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 30709 bytes was the average size of a spliced alignment
$ 14000 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1750 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 113 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-30 19:02:15
-->
