psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 853 1 0 0 0 0 7 2531 + SGN-E746397 1845 976 1830 C02HBa0026M05.1 141140 221 3606 8 70,180,96,138,83,38,215,34, 976,1046,1226,1322,1460,1543,1581,1796, 221,413,773,1245,2028,2791,2905,3572, 31 0 0 0 0 0 0 0 - SGN-E745449 1351 468 499 C02HBa0026M05.1 141140 28771 28802 1 31, 852, 28771, 31 0 0 0 0 0 0 0 - SGN-E744990 1820 531 562 C02HBa0026M05.1 141140 28771 28802 1 31, 1258, 28771, 31 0 0 0 0 0 0 0 - SGN-E744933 1596 312 343 C02HBa0026M05.1 141140 28771 28802 1 31, 1253, 28771, 796 0 0 2 0 0 1 807 - SGN-E687949 798 0 798 C02HBa0026M05.1 141140 64120 65725 2 385,413, 0,385, 64120,65312, 325 7 0 0 0 0 0 0 + SGN-E201272 332 0 332 C02HBa0026M05.1 141140 51369 51701 1 332, 0, 51369, 609 1 0 0 0 0 2 1652 - SGN-E204796 610 0 610 C02HBa0026M05.1 141140 127899 130161 3 150,401,59, 0,150,551, 127899,129067,130102, 56 2 0 0 1 1 2 4 - SGN-E206104 565 188 247 C02HBa0026M05.1 141140 28424 28486 4 8,4,32,14, 318,326,331,363, 28424,28433,28437,28472, 530 0 0 0 0 0 6 4130 - SGN-E209446 530 0 530 C02HBa0026M05.1 141140 42649 47309 7 59,86,52,117,66,81,69, 0,59,145,197,314,380,461, 42649,44455,44642,44807,45003,47045,47240, 31 0 0 0 0 0 0 0 - SGN-E211981 537 185 216 C02HBa0026M05.1 141140 28771 28802 1 31, 321, 28771, 88 5 0 0 0 0 1 32 - SGN-E214223 624 509 602 C02HBa0026M05.1 141140 44139 44264 2 9,84, 22,31, 44139,44180, 117 0 0 0 0 0 0 0 - SGN-E577833 725 268 385 C02HBa0026M05.1 141140 107731 107848 1 117, 340, 107731, 40 0 0 0 1 27 1 29 - SGN-E578155 819 663 730 C02HBa0026M05.1 141140 73719 73788 2 26,14, 89,142, 73719,73774, 638 2 0 0 0 0 3 3329 - SGN-E309117 640 0 640 C02HBa0026M05.1 141140 68839 72808 4 139,173,254,74, 0,139,312,566, 68839,71669,72475,72734, 548 4 0 0 0 0 2 3426 - SGN-E309118 569 0 552 C02HBa0026M05.1 141140 67761 71739 3 336,146,70, 17,353,499, 67761,68832,71669, 33 1 0 0 0 0 0 0 - SGN-E312488 489 445 479 C02HBa0026M05.1 141140 26520 26554 1 34, 10, 26520, 717 4 0 0 0 0 0 0 + SGN-E380019 721 0 721 C02HBa0026M05.1 141140 51516 52237 1 721, 0, 51516, 719 7 0 2 0 0 9 5581 - SGN-E379132 728 0 728 C02HBa0026M05.1 141140 41000 47309 10 42,48,106,61,86,52,117,66,81,69, 0,42,90,196,257,343,395,512,578,659, 41000,41172,41330,42647,44455,44642,44807,45003,47045,47240, 669 3 0 0 0 0 0 0 + SGN-E379757 672 0 672 C02HBa0026M05.1 141140 51360 52032 1 672, 0, 51360, 53 2 0 0 0 0 0 0 + SGN-E367984 729 647 702 C02HBa0026M05.1 141140 122504 122559 1 55, 647, 122504, 31 0 0 0 0 0 0 0 - SGN-E369472 712 372 403 C02HBa0026M05.1 141140 110528 110559 1 31, 309, 110528, 192 14 0 0 1 7 2 6 - SGN-E370504 599 10 223 C02HBa0026M05.1 141140 35161 35373 3 31,66,109, 376,407,480, 35161,35193,35264, 192 14 0 0 1 7 2 6 - SGN-E371571 684 10 223 C02HBa0026M05.1 141140 35161 35373 3 25,72,109, 461,486,565, 35161,35187,35264, 172 0 0 0 0 0 1 122 + SGN-E372672 477 303 475 C02HBa0026M05.1 141140 221 515 2 70,102, 303,373, 221,413, 172 0 0 0 0 0 1 122 + SGN-E372673 477 302 474 C02HBa0026M05.1 141140 221 515 2 70,102, 302,372, 221,413, 101 8 0 0 0 0 2 2 + SGN-E375016 442 296 405 C02HBa0026M05.1 141140 122644 122755 3 94,11,4, 296,390,401, 122644,122739,122751, 436 21 0 0 0 0 0 0 - SGN-E374886 481 3 460 C02HBa0026M05.1 141140 124328 124785 1 457, 21, 124328, 622 0 0 0 0 0 2 1652 - SGN-E374887 634 0 622 C02HBa0026M05.1 141140 127887 130161 3 162,401,59, 12,174,575, 127887,129067,130102, 108 6 0 0 1 4 3 18 - SGN-E377955 647 446 564 C02HBa0026M05.1 141140 9476 9608 4 24,67,16,7, 83,107,174,194, 9476,9501,9578,9601, 108 6 0 0 1 4 3 18 - SGN-E377794 657 437 555 C02HBa0026M05.1 141140 9476 9608 4 24,67,16,7, 102,126,193,213, 9476,9501,9578,9601, 192 14 0 0 1 7 2 6 - SGN-E391217 523 11 224 C02HBa0026M05.1 141140 35161 35373 3 25,72,109, 299,324,403, 35161,35187,35264, 101 8 0 0 0 0 2 2 + SGN-E392694 446 299 408 C02HBa0026M05.1 141140 122644 122755 3 94,11,4, 299,393,404, 122644,122739,122751, 30 0 0 0 0 0 0 0 - SGN-E396221 644 20 50 C02HBa0026M05.1 141140 28773 28803 1 30, 594, 28773, 448 6 0 0 0 0 0 0 - SGN-E544842 481 0 454 C02HBa0026M05.1 141140 25281 25735 1 454, 27, 25281, 704 15 0 1 0 0 0 0 - SGN-E546047 721 0 720 C02HBa0026M05.1 141140 6277 6997 1 720, 1, 6277, 663 55 0 1 0 0 0 0 - SGN-E546047 721 1 720 C02HBa0026M05.1 141140 13801 14520 1 719, 1, 13801, 299 11 0 0 3 13 2 15 - SGN-E546047 721 4 327 C02HBa0026M05.1 141140 11081 11406 4 164,109,12,25, 394,559,674,692, 11081,11245,11366,11381, 39 2 0 0 0 0 0 0 + SGN-E546158 715 50 91 C02HBa0026M05.1 141140 69522 69563 1 41, 50, 69522, 31 0 0 0 0 0 0 0 - SGN-E548413 835 746 777 C02HBa0026M05.1 141140 28771 28802 1 31, 58, 28771, 449 5 0 0 0 0 0 0 - SGN-E549109 481 0 454 C02HBa0026M05.1 141140 25281 25735 1 454, 27, 25281, 544 11 0 0 2 18 2 452 - SGN-E549300 610 0 573 C02HBa0026M05.1 141140 4861 5868 4 13,5,41,496, 37,53,73,114, 4861,4874,5329,5372, 529 1 0 0 0 0 1 2691 - SGN-E237669 530 0 530 C02HBa0026M05.1 141140 68629 71850 2 349,181, 0,349, 68629,71669, 38 0 0 0 0 0 1 3 + SGN-E240408 391 128 166 C02HBa0026M05.1 141140 55569 55610 2 33,5, 128,161, 55569,55605, 979 6 0 0 2 6 7 4067 - SGN-E727693 999 0 991 C02HBa0026M05.1 141140 67760 72812 9 13,5,79,8,226,146,38,133,337, 8,26,31,110,119,345,491,529,662, 67760,67777,67783,67863,67871,68832,71669,71709,72475, 907 2 0 0 0 0 3 4059 - SGN-E727769 909 0 909 C02HBa0026M05.1 141140 67850 72818 4 247,146,173,343, 0,247,393,566, 67850,68832,71669,72475, 31 0 0 0 0 0 0 0 + SGN-E719256 531 258 289 C02HBa0026M05.1 141140 110525 110556 1 31, 258, 110525, 31 0 0 0 0 0 0 0 + SGN-E719350 758 266 297 C02HBa0026M05.1 141140 110528 110559 1 31, 266, 110528, 31 0 0 0 0 0 0 0 + SGN-E717849 597 357 388 C02HBa0026M05.1 141140 110525 110556 1 31, 357, 110525, 641 3 0 0 1 1 0 0 - SGN-E698928 647 2 647 C02HBa0026M05.1 141140 13908 14552 2 604,40, 0,605, 13908,14512, 558 31 0 0 4 22 6 5561 - SGN-E698928 647 31 642 C02HBa0026M05.1 141140 20845 26995 7 258,11,151,112,41,6,10, 5,265,286,443,555,596,606, 20845,21104,26660,26820,26935,26978,26985, 745 1 0 0 0 0 6 2079 + SGN-E705239 850 104 850 C02HBa0026M05.1 141140 221 3046 7 70,180,96,138,83,38,141, 104,174,354,450,588,671,709, 221,413,773,1245,2028,2791,2905, 820 4 0 0 0 0 1 807 - SGN-E706258 824 0 824 C02HBa0026M05.1 141140 64176 65807 2 329,495, 0,329, 64176,65312, 31 0 0 0 0 0 0 0 + SGN-E713464 591 261 292 C02HBa0026M05.1 141140 110525 110556 1 31, 261, 110525, 38 1 0 0 0 0 2 23 + SGN-E715358 518 479 518 C02HBa0026M05.1 141140 48590 48652 3 12,11,16, 479,491,502, 48590,48609,48636, 38 1 0 0 0 0 2 23 + SGN-E716090 518 479 518 C02HBa0026M05.1 141140 48590 48652 3 12,11,16, 479,491,502, 48590,48609,48636, 30 0 0 1 0 0 0 0 + SGN-E242278 536 496 527 C02HBa0026M05.1 141140 110528 110559 1 31, 496, 110528, 31 0 0 0 0 0 0 0 - SGN-E243086 383 76 107 C02HBa0026M05.1 141140 28771 28802 1 31, 276, 28771, 31 0 0 0 0 0 0 0 - SGN-E244363 648 544 575 C02HBa0026M05.1 141140 28771 28802 1 31, 73, 28771, 31 0 0 0 0 0 0 0 - SGN-E246187 522 473 504 C02HBa0026M05.1 141140 28771 28802 1 31, 18, 28771, 31 0 0 0 0 0 0 0 - SGN-E247800 632 441 472 C02HBa0026M05.1 141140 28771 28802 1 31, 160, 28771, 30 0 0 0 0 0 0 0 - SGN-E247410 589 19 49 C02HBa0026M05.1 141140 28773 28803 1 30, 540, 28773, 31 0 0 0 0 0 0 0 - SGN-E248217 471 147 178 C02HBa0026M05.1 141140 28771 28802 1 31, 293, 28771, 32 0 0 0 0 0 0 0 - SGN-E256108 585 335 367 C02HBa0026M05.1 141140 28772 28804 1 32, 218, 28772, 31 0 0 0 0 0 0 0 - SGN-E266579 537 72 103 C02HBa0026M05.1 141140 28771 28802 1 31, 434, 28771, 31 0 0 0 0 0 0 0 - SGN-E265318 569 72 103 C02HBa0026M05.1 141140 28771 28802 1 31, 466, 28771, 413 1 0 0 1 2 3 529 + SGN-E228766 458 26 442 C02HBa0026M05.1 141140 2795 3738 4 5,28,215,166, 26,33,61,276, 2795,2801,2905,3572, 418 1 0 0 0 0 2 528 + SGN-E229054 442 7 426 C02HBa0026M05.1 141140 2791 3738 3 38,215,166, 7,45,260, 2791,2905,3572, 84 5 0 0 1 9 0 0 + SGN-E230552 384 114 212 C02HBa0026M05.1 141140 73719 73808 2 73,16, 114,196, 73719,73792, 335 3 0 0 0 0 0 0 - SGN-E234047 373 15 353 C02HBa0026M05.1 141140 67760 68098 1 338, 20, 67760, 332 5 0 0 0 0 0 0 - SGN-E234292 375 17 354 C02HBa0026M05.1 141140 67761 68098 1 337, 21, 67761, 31 0 0 0 0 0 0 0 - SGN-E272959 392 196 227 C02HBa0026M05.1 141140 28771 28802 1 31, 165, 28771, 371 6 0 0 0 0 2 638 - SGN-E275008 377 0 377 C02HBa0026M05.1 141140 71744 72759 3 98,252,27, 0,98,350, 71744,72475,72732, 31 0 0 0 0 0 0 0 - SGN-E270536 526 62 93 C02HBa0026M05.1 141140 28771 28802 1 31, 433, 28771, 31 0 0 0 0 0 0 0 - SGN-E277058 457 67 98 C02HBa0026M05.1 141140 28771 28802 1 31, 359, 28771, 31 0 0 0 0 0 0 0 - SGN-E277072 585 16 47 C02HBa0026M05.1 141140 28771 28802 1 31, 538, 28771, 473 1 0 0 0 0 2 3324 - SGN-E273674 474 0 474 C02HBa0026M05.1 141140 68913 72711 3 65,173,236, 0,65,238, 68913,71669,72475, 442 1 0 0 0 0 0 0 - SGN-E275089 443 0 443 C02HBa0026M05.1 141140 124988 125431 1 443, 0, 124988, 192 14 0 0 1 7 2 6 - SGN-E280629 530 10 223 C02HBa0026M05.1 141140 35161 35373 3 25,72,109, 307,332,411, 35161,35187,35264, 451 0 0 0 0 0 1 1018 - SGN-E279004 451 0 451 C02HBa0026M05.1 141140 127913 129382 2 136,315, 0,136, 127913,129067, 172 0 0 0 0 0 1 122 + SGN-E290635 477 302 474 C02HBa0026M05.1 141140 221 515 2 70,102, 302,372, 221,413, 31 0 0 0 0 0 0 0 - SGN-E282130 351 160 191 C02HBa0026M05.1 141140 28771 28802 1 31, 160, 28771, 31 0 0 0 0 0 0 0 - SGN-E290690 646 542 573 C02HBa0026M05.1 141140 28771 28802 1 31, 73, 28771, 367 4 0 0 0 0 1 502 - SGN-E300745 371 0 371 C02HBa0026M05.1 141140 38223 39096 2 339,32, 0,339, 38223,39064, 38 1 0 0 0 0 1 3 - SGN-E305348 499 5 44 C02HBa0026M05.1 141140 136894 136936 2 8,31, 455,463, 136894,136905, 448 5 0 0 0 0 0 0 - SGN-E308623 480 0 453 C02HBa0026M05.1 141140 25281 25734 1 453, 27, 25281, 35 3 0 0 0 0 0 0 - SGN-E329635 480 72 110 C02HBa0026M05.1 141140 89702 89740 1 38, 370, 89702, 754 1 0 0 0 0 1 807 - SGN-E328180 755 0 755 C02HBa0026M05.1 141140 64162 65724 2 343,412, 0,343, 64162,65312, 31 0 0 0 0 0 0 0 - SGN-E324336 635 315 346 C02HBa0026M05.1 141140 28771 28802 1 31, 289, 28771, 464 0 0 0 0 0 0 0 - SGN-E313459 464 0 464 C02HBa0026M05.1 141140 124822 125286 1 464, 0, 124822, 31 0 0 0 0 0 0 0 - SGN-E313995 539 490 521 C02HBa0026M05.1 141140 28771 28802 1 31, 18, 28771, 608 4 0 0 0 0 1 502 - SGN-E314318 612 0 612 C02HBa0026M05.1 141140 37988 39102 2 574,38, 0,574, 37988,39064, 31 0 0 0 0 0 0 0 - SGN-E316335 629 55 86 C02HBa0026M05.1 141140 28771 28802 1 31, 543, 28771, 364 3 0 0 0 0 0 0 - SGN-E309464 397 30 397 C02HBa0026M05.1 141140 38197 38564 1 367, 0, 38197, 537 4 0 0 0 0 4 466 + SGN-E312885 541 0 541 C02HBa0026M05.1 141140 97115 98122 5 113,169,85,74,100, 0,113,282,367,441, 97115,97304,97702,97876,98022, 31 1 0 0 0 0 0 0 - SGN-E338374 466 407 439 C02HBa0026M05.1 141140 28772 28804 1 32, 27, 28772, 636 6 0 0 0 0 2 176 - SGN-E337202 651 0 642 C02HBa0026M05.1 141140 36633 37451 3 436,145,61, 9,445,590, 36633,37158,37390, 732 3 0 2 1 1 3 15345 - SGN-E343800 738 0 738 C02HBa0026M05.1 141140 124419 140501 5 150,109,79,147,252, 0,151,260,339,486, 124419,124569,136033,138147,140249, 31 0 0 0 0 0 0 0 - SGN-E345091 728 494 525 C02HBa0026M05.1 141140 28771 28802 1 31, 203, 28771, 31 0 0 0 0 0 0 0 - SGN-E346666 721 190 221 C02HBa0026M05.1 141140 28771 28802 1 31, 500, 28771, 431 5 0 0 0 0 0 0 - SGN-E357069 447 0 436 C02HBa0026M05.1 141140 124327 124763 1 436, 11, 124327, 519 2 0 0 0 0 0 0 - SGN-E357817 521 0 521 C02HBa0026M05.1 141140 116607 117128 1 521, 0, 116607, 32 0 0 0 0 0 0 0 - SGN-E350209 738 591 623 C02HBa0026M05.1 141140 110528 110560 1 32, 115, 110528, 433 5 0 0 0 0 0 0 - SGN-E351129 449 0 438 C02HBa0026M05.1 141140 124327 124765 1 438, 11, 124327, 519 6 0 1 0 0 2 3324 - SGN-E365278 526 0 526 C02HBa0026M05.1 141140 68839 72689 3 139,173,214, 0,139,312, 68839,71669,72475, 400 4 0 0 1 1 1 633 - SGN-E365330 405 0 405 C02HBa0026M05.1 141140 71704 72741 3 138,249,17, 0,138,388, 71704,72475,72724, 32 0 0 0 0 0 1 1 + SGN-E695773 860 819 851 C02HBa0026M05.1 141140 122108 122141 2 27,5, 819,846, 122108,122136, 44 1 0 0 0 0 0 0 + SGN-E696994 809 639 684 C02HBa0026M05.1 141140 16242 16287 1 45, 639, 16242, 534 10 0 0 0 0 0 0 - SGN-E355914 544 0 544 C02HBa0026M05.1 141140 6452 6996 1 544, 0, 6452, 305 14 0 0 2 7 2 9 - SGN-E355914 544 0 326 C02HBa0026M05.1 141140 11081 11409 4 164,115,12,28, 218,383,498,516, 11081,11245,11366,11381, 55 2 0 0 1 21 1 19 + SGN-E356038 530 12 90 C02HBa0026M05.1 141140 69487 69563 2 16,41, 12,49, 69487,69522, 379 3 0 0 0 0 0 0 - SGN-E356061 382 0 382 C02HBa0026M05.1 141140 117521 117903 1 382, 0, 117521, 413 7 0 0 0 0 0 0 - SGN-E356090 420 0 420 C02HBa0026M05.1 141140 117478 117898 1 420, 0, 117478,