psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1617 1 0 0 1 1 9 5334 + SGN-E745652 1638 1 1620 C02HBa0075D08.1 66380 48236 55188 11 292,90,134,171,126,80,199,108,59,8,351, 1,293,383,517,688,814,894,1093,1201,1261,1269, 48236,49733,49951,50181,50649,51972,53116,53811,54583,54642,54837, 602 0 0 0 0 0 3 1021 + SGN-E688380 602 0 602 C02HBa0075D08.1 66380 2145 3768 4 266,101,50,185, 0,266,367,417, 2145,2491,2725,3583, 457 5 0 0 0 0 3 1021 + SGN-E202681 462 0 462 C02HBa0075D08.1 66380 2146 3629 4 265,101,50,46, 0,265,366,416, 2146,2491,2725,3583, 542 1 0 0 0 0 0 0 + SGN-E206246 543 0 543 C02HBa0075D08.1 66380 15526 16069 1 543, 0, 15526, 691 7 0 0 0 0 1 1064 + SGN-E211056 698 0 698 C02HBa0075D08.1 66380 51540 53302 2 512,186, 0,512, 51540,53116, 419 0 0 0 0 0 4 4524 + SGN-E214588 419 0 419 C02HBa0075D08.1 66380 7317 12260 5 135,124,66,39,55, 0,135,259,325,364, 7317,9677,10378,11383,12205, 555 1 0 0 0 0 0 0 + SGN-E319904 556 0 556 C02HBa0075D08.1 66380 15513 16069 1 556, 0, 15513, 492 0 0 1 0 0 0 0 + SGN-E321220 507 14 507 C02HBa0075D08.1 66380 43332 43825 1 493, 14, 43332, 528 2 0 0 0 0 1 3084 + SGN-E321223 530 0 530 C02HBa0075D08.1 66380 40211 43825 2 41,489, 0,41, 40211,43336, 693 0 0 0 0 0 3 1429 + SGN-E321383 693 0 693 C02HBa0075D08.1 66380 48148 50270 4 380,90,134,89, 0,380,470,604, 48148,49733,49951,50181, 512 0 0 0 0 0 0 0 + SGN-E321938 512 0 512 C02HBa0075D08.1 66380 15564 16076 1 512, 0, 15564, 652 3 0 0 0 0 0 0 + SGN-E321848 655 0 655 C02HBa0075D08.1 66380 15557 16212 1 655, 0, 15557, 596 0 0 0 0 0 4 1759 + SGN-E309024 596 0 596 C02HBa0075D08.1 66380 2276 4631 5 135,101,50,187,123, 0,135,236,286,473, 2276,2491,2725,3583,4508, 528 0 0 0 0 0 2 629 + SGN-E309025 545 0 528 C02HBa0075D08.1 66380 4641 5798 3 12,131,385, 0,12,143, 4641,4979,5413, 612 1 0 0 0 0 0 0 + SGN-E311655 613 0 613 C02HBa0075D08.1 66380 37945 38558 1 613, 0, 37945, 637 1 0 0 0 0 2 532 + SGN-E372378 663 13 651 C02HBa0075D08.1 66380 21179 22349 3 66,140,432, 13,79,219, 21179,21347,21917, 724 1 0 0 2 2 2 5161 + SGN-E372379 727 0 727 C02HBa0075D08.1 66380 15503 21389 4 625,58,16,26, 0,625,684,701, 15503,21186,21347,21363, 699 0 0 0 0 0 3 5590 + SGN-E372111 711 0 699 C02HBa0075D08.1 66380 16060 22349 4 68,59,140,432, 0,68,127,267, 16060,21186,21347,21917, 662 0 0 0 0 0 1 5058 + SGN-E372112 662 0 662 C02HBa0075D08.1 66380 15503 21223 2 625,37, 0,625, 15503,21186, 633 0 0 0 0 0 2 532 + SGN-E372200 645 0 633 C02HBa0075D08.1 66380 21184 22349 3 61,140,432, 0,61,201, 21184,21347,21917, 653 0 0 0 0 0 1 5058 + SGN-E372201 653 0 653 C02HBa0075D08.1 66380 15503 21214 2 625,28, 0,625, 15503,21186, 704 1 0 0 0 0 2 965 + SGN-E377514 712 0 705 C02HBa0075D08.1 66380 59434 61104 3 62,106,537, 0,62,168, 59434,60145,60567, 627 0 0 0 0 0 1 87 + SGN-E377515 704 77 704 C02HBa0075D08.1 66380 58775 59489 2 105,522, 77,182, 58775,58967, 648 8 0 0 0 0 0 0 + SGN-E391716 671 0 656 C02HBa0075D08.1 66380 43604 44260 1 656, 0, 43604, 393 11 0 0 0 0 0 0 + SGN-E391717 421 6 410 C02HBa0075D08.1 66380 43332 43736 1 404, 6, 43332, 728 1 0 1 0 0 4 1131 - SGN-E541230 730 0 730 C02HBa0075D08.1 66380 33240 35101 5 11,41,15,306,357, 0,11,52,67,373, 33240,33563,33605,33956,34744, 724 5 0 1 1 1 2 604 + SGN-E543786 741 10 741 C02HBa0075D08.1 66380 42616 43950 4 117,582,8,23, 10,127,710,718, 42616,43336,43918,43927, 687 1 0 0 0 0 0 0 + SGN-E545264 698 0 688 C02HBa0075D08.1 66380 38883 39571 1 688, 0, 38883, 811 2 0 0 0 0 0 0 + SGN-E545265 813 0 813 C02HBa0075D08.1 66380 37944 38757 1 813, 0, 37944, 373 16 0 0 1 3 1 18 - SGN-E546180 719 253 645 C02HBa0075D08.1 66380 57426 57833 3 13,197,179, 74,87,287, 57426,57457,57654, 558 9 0 0 5 56 2 488 - SGN-E547225 749 0 623 C02HBa0075D08.1 66380 45073 46128 7 20,12,94,198,43,96,104, 126,150,177,272,484,527,645, 45073,45093,45105,45199,45397,45915,46024, 659 0 0 0 0 0 2 736 + SGN-E550124 736 77 736 C02HBa0075D08.1 66380 58775 60170 3 105,529,25, 77,182,711, 58775,58967,60145, 681 2 0 0 1 1 4 968 + SGN-E550125 684 0 684 C02HBa0075D08.1 66380 59427 61078 5 69,106,487,13,8, 0,69,175,663,676, 59427,60145,60567,61056,61070, 602 0 0 0 0 0 3 1021 + SGN-E550717 602 0 602 C02HBa0075D08.1 66380 2145 3768 4 266,101,50,185, 0,266,367,417, 2145,2491,2725,3583, 583 1 0 0 0 0 0 0 + SGN-E203298 591 7 591 C02HBa0075D08.1 66380 18182 18766 1 584, 7, 18182, 457 0 0 0 0 0 1 430 + SGN-E203299 472 0 457 C02HBa0075D08.1 66380 21394 22281 2 93,364, 0,93, 21394,21917, 501 0 0 0 0 0 1 87 + SGN-E231933 578 77 578 C02HBa0075D08.1 66380 58775 59363 2 105,396, 77,182, 58775,58967, 908 3 0 0 0 0 0 0 + SGN-E730484 930 8 919 C02HBa0075D08.1 66380 43332 44243 1 911, 8, 43332, 847 3 0 0 0 0 0 0 + SGN-E731291 858 8 858 C02HBa0075D08.1 66380 43332 44182 1 850, 8, 43332, 698 2 0 0 1 1 0 0 + SGN-E720887 704 3 704 C02HBa0075D08.1 66380 38059 38759 2 673,27, 3,677, 38059,38732, 832 0 0 0 0 0 1 3084 + SGN-E721998 846 14 846 C02HBa0075D08.1 66380 40177 44093 2 75,757, 14,89, 40177,43336, 590 0 0 0 0 0 4 887 + SGN-E740737 789 198 788 C02HBa0075D08.1 66380 19 1496 5 127,158,64,182,59, 198,325,483,547,729, 19,679,912,1157,1437, 753 2 0 0 0 0 1 3084 + SGN-E697748 755 0 755 C02HBa0075D08.1 66380 40205 44044 2 47,708, 0,47, 40205,43336, 844 4 0 0 1 1 0 0 + SGN-E699568 865 16 865 C02HBa0075D08.1 66380 43332 44180 2 816,32, 16,833, 43332,44148, 768 1 0 0 0 0 1 3084 + SGN-E700106 775 6 775 C02HBa0075D08.1 66380 40216 44069 2 36,733, 6,42, 40216,43336, 908 0 0 0 0 0 5 3130 + SGN-E703037 908 0 908 C02HBa0075D08.1 66380 18258 22296 6 55,159,67,108,140,379, 0,55,214,281,389,529, 18258,20310,20555,21137,21347,21917, 931 2 0 0 0 0 1 3084 + SGN-E707503 945 4 937 C02HBa0075D08.1 66380 40213 44230 2 39,894, 4,43, 40213,43336, 846 5 0 0 0 0 9 5642 + SGN-E709050 851 0 851 C02HBa0075D08.1 66380 7947 14440 10 67,124,66,39,81,48,51,69,234,72, 0,67,191,257,296,377,425,476,545,779, 7947,9677,10378,11383,12205,12405,13139,13354,13967,14368, 739 4 0 0 0 0 2 193 + SGN-E709875 751 8 751 C02HBa0075D08.1 66380 1437 2373 3 58,332,353, 8,66,398, 1437,1573,2020, 691 2 0 0 0 0 1 167 + SGN-E710316 698 5 698 C02HBa0075D08.1 66380 13973 14833 2 228,465, 5,233, 13973,14368, 535 0 0 0 0 0 3 1021 + SGN-E249489 535 0 535 C02HBa0075D08.1 66380 2269 3825 4 142,101,50,242, 0,142,243,293, 2269,2491,2725,3583, 594 0 0 0 0 0 3 707 + SGN-E254592 594 0 594 C02HBa0075D08.1 66380 20131 21432 4 338,67,104,85, 0,338,405,509, 20131,20555,21141,21347, 445 0 0 0 0 0 2 605 + SGN-E254722 445 0 445 C02HBa0075D08.1 66380 20131 21181 3 338,67,40, 0,338,405, 20131,20555,21141, 593 0 0 0 0 0 0 0 + SGN-E267200 593 0 593 C02HBa0075D08.1 66380 13363 13956 1 593, 0, 13363, 208 10 0 0 0 0 0 0 - SGN-E216569 226 0 218 C02HBa0075D08.1 66380 37945 38163 1 218, 8, 37945, 352 8 0 0 0 0 0 0 + SGN-E217032 378 0 360 C02HBa0075D08.1 66380 39178 39538 1 360, 0, 39178, 311 4 0 1 0 0 0 0 + SGN-E216472 330 0 316 C02HBa0075D08.1 66380 39225 39541 1 316, 0, 39225, 110 0 0 0 0 0 0 0 + SGN-E226386 152 8 118 C02HBa0075D08.1 66380 44139 44249 1 110, 8, 44139, 109 1 0 0 0 0 0 0 + SGN-E226482 152 8 118 C02HBa0075D08.1 66380 44139 44249 1 110, 8, 44139, 390 1 0 0 1 1 0 0 + SGN-E239015 410 0 392 C02HBa0075D08.1 66380 43871 44262 2 62,329, 0,63, 43871,43933, 325 1 0 0 0 0 0 0 + SGN-E239253 349 0 326 C02HBa0075D08.1 66380 43931 44257 1 326, 0, 43931, 563 5 0 0 0 0 0 0 + SGN-E268786 568 0 568 C02HBa0075D08.1 66380 43337 43905 1 568, 0, 43337, 491 0 0 0 0 0 0 0 + SGN-E271286 496 5 496 C02HBa0075D08.1 66380 43332 43823 1 491, 5, 43332, 486 0 0 0 0 0 4 2005 + SGN-E273926 486 0 486 C02HBa0075D08.1 66380 2517 5008 5 75,50,187,145,29, 0,75,125,312,457, 2517,2725,3583,4508,4979, 433 0 0 0 0 0 0 0 + SGN-E289173 433 0 433 C02HBa0075D08.1 66380 15503 15936 1 433, 0, 15503, 410 0 0 0 0 0 1 482 - SGN-E295566 410 0 410 C02HBa0075D08.1 66380 34208 35100 2 54,356, 0,54, 34208,34744, 288 5 0 0 0 0 0 0 - SGN-E298770 332 39 332 C02HBa0075D08.1 66380 43968 44261 1 293, 0, 43968, 369 4 0 0 1 1 0 0 + SGN-E301087 374 0 374 C02HBa0075D08.1 66380 38482 38855 2 16,357, 0,17, 38482,38498, 541 0 0 1 0 0 0 0 + SGN-E301093 542 0 542 C02HBa0075D08.1 66380 38348 38890 1 542, 0, 38348, 237 1 0 0 0 0 0 0 + SGN-E304920 245 7 245 C02HBa0075D08.1 66380 43332 43570 1 238, 7, 43332, 487 0 0 0 0 0 1 603 + SGN-E306285 496 9 496 C02HBa0075D08.1 66380 42616 43706 2 117,370, 9,126, 42616,43336, 39 1 0 0 1 1 2 10 + SGN-E333993 355 113 154 C02HBa0075D08.1 66380 55876 55926 3 11,23,6, 113,124,148, 55876,55894,55920, 247 0 0 0 0 0 1 503 + SGN-E330186 470 223 470 C02HBa0075D08.1 66380 19 769 2 157,90, 223,380, 19,679, 256 1 0 0 0 0 2 3076 + SGN-E330690 257 0 257 C02HBa0075D08.1 66380 17020 20353 3 68,146,43, 0,68,214, 17020,18167,20310, 36 0 0 0 0 0 1 321 - SGN-E331338 442 64 100 C02HBa0075D08.1 66380 55895 56252 2 23,13, 342,365, 55895,56239, 702 1 0 0 0 0 12 3983 + SGN-E325633 703 0 703 C02HBa0075D08.1 66380 9725 14411 13 76,66,39,81,48,51,69,177,15,9,30,5,37, 0,76,142,181,262,310,361,430,607,622,631,661,666, 9725,10378,11383,12205,12405,13139,13354,13967,14145,14161,14171,14368,14374, 764 0 0 0 0 0 3 1429 + SGN-E326076 764 0 764 C02HBa0075D08.1 66380 48142 50335 4 386,90,134,154, 0,386,476,610, 48142,49733,49951,50181, 662 2 0 0 0 0 0 0 + SGN-E327699 675 11 675 C02HBa0075D08.1 66380 43332 43996 1 664, 11, 43332, 528 2 0 0 0 0 0 0 + SGN-E312202 530 0 530 C02HBa0075D08.1 66380 15539 16069 1 530, 0, 15539, 580 0 0 0 0 0 1 1 + SGN-E314133 580 0 580 C02HBa0075D08.1 66380 28414 28995 2 528,52, 0,528, 28414,28943, 711 0 0 0 2 2 1 1 + SGN-E318397 724 11 724 C02HBa0075D08.1 66380 43332 44044 4 582,100,4,25, 11,594,695,699, 43332,43914,44014,44019, 244 0 0 0 2 4 1 1 + SGN-E339583 248 0 248 C02HBa0075D08.1 66380 43417 43662 3 10,22,212, 0,13,36, 43417,43428,43450, 750 0 0 1 0 0 0 0 + SGN-E344206 765 14 765 C02HBa0075D08.1 66380 43332 44083 1 751, 14, 43332, 614 0 0 1 5 10 3 3088 + SGN-E345684 625 0 625 C02HBa0075D08.1 66380 40206 43909 7 6,34,6,394,15,78,82, 0,7,42,48,447,463,543, 40206,40212,40246,43336,43733,43748,43827, 723 1 0 1 0 0 1 1064 + SGN-E342821 725 0 725 C02HBa0075D08.1 66380 51418 53207 2 634,91, 0,634, 51418,53116, 265 1 0 0 0 0 0 0 + SGN-E350766 277 0 266 C02HBa0075D08.1 66380 43980 44246 1 266, 0, 43980, 693 2 0 0 0 0 0 0 + SGN-E352884 700 0 695 C02HBa0075D08.1 66380 44017 44712 1 695, 0, 44017, 667 0 0 0 0 0 2 532 + SGN-E349485 667 0 667 C02HBa0075D08.1 66380 21183 22382 3 62,140,465, 0,62,202, 21183,21347,21917, 265 1 0 0 0 0 0 0 + SGN-E356561 277 0 266 C02HBa0075D08.1 66380 43980 44246 1 266, 0, 43980, 565 0 0 0 0 0 1 159 - SGN-E349075 570 0 565 C02HBa0075D08.1 66380 31011 31735 2 534,31, 5,539, 31011,31704, 565 0 0 0 0 0 1 159 - SGN-E350583 574 0 565 C02HBa0075D08.1 66380 31011 31735 2 534,31, 9,543, 31011,31704, 565 0 0 0 0 0 1 159 - SGN-E351120 574 0 565 C02HBa0075D08.1 66380 31011 31735 2 534,31, 9,543, 31011,31704, 542 0 0 0 0 0 2 632 + SGN-E350922 555 0 542 C02HBa0075D08.1 66380 4512 5686 3 141,131,270, 0,141,272, 4512,4979,5416, 412 5 0 1 2 36 2 488 - SGN-E362008 476 22 476 C02HBa0075D08.1 66380 45202 46108 4 195,43,96,84, 0,209,252,370, 45202,45397,45915,46024, 413 7 0 0 3 37 3 489 - SGN-E360647 457 0 457 C02HBa0075D08.1 66380 45215 46124 6 182,43,96,86,6,7, 0,196,239,357,443,450, 45215,45397,45915,46024,46111,46117, 413 7 0 0 2 36 2 488 - SGN-E359943 456 0 456 C02HBa0075D08.1 66380 45219 46127 4 178,43,96,103, 0,192,235,353, 45219,45397,45915,46024, 366 18 0 0 1 11 2 26 - SGN-E690437 734 291 686 C02HBa0075D08.1 66380 57423 57833 3 16,189,179, 48,64,264, 57423,57457,57654, 366 18 0 0 1 11 2 26 - SGN-E694277 839 246 641 C02HBa0075D08.1 66380 57423 57833 3 16,189,179, 198,214,414, 57423,57457,57654, 41 0 0 0 1 1 2 13 - SGN-E692360 530 409 451 C02HBa0075D08.1 66380 55873 55927 3 9,26,6, 79,89,115, 55873,55891,55921, 783 16 0 0 6 30 11 2442 + SGN-E696371 844 0 829 C02HBa0075D08.1 66380 52010 55251 16 42,199,90,18,59,8,70,34,137,40,26,14,44,9,5,4, 0,42,241,334,352,412,420,490,524,670,710,747,763,811,820,825, 52010,53116,53811,53901,54583,54642,54837,54916,54952,55089,55140,55172,55186,55231,55241,55247, 645 32 0 0 2 4 5 3719 + SGN-E692531 691 10 691 C02HBa0075D08.1 66380 50244 54640 7 108,126,80,199,91,18,55, 10,118,244,324,523,617,636, 50244,50649,51972,53116,53811,53902,54585, 280 14 0 0 1 3 1 18 - SGN-E696644 504 24 321 C02HBa0075D08.1 66380 57423 57735 3 16,197,81, 183,199,399, 57423,57457,57654, 280 14 0 0 1 3 1 18 - SGN-E692804 500 24 321 C02HBa0075D08.1 66380 57423 57735 3 16,197,81, 179,195,395, 57423,57457,57654, 520 10 0 0 4 4 0 0 + SGN-E359149 538 4 538 C02HBa0075D08.1 66380 15516 16046 5 21,8,37,188,276, 4,26,35,73,262, 15516,15537,15545,15582,15770, 558 8 0 0 0 0 0 0 + SGN-E359187 566 0 566 C02HBa0075D08.1 66380 15517 16083 1 566, 0, 15517, 484 7 0 0 0 0 0 0 + SGN-E358990 508 17 508 C02HBa0075D08.1 66380 43332 43823 1 491, 17, 43332,