psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1911 2 0 0 0 0 3 264 - SGN-E746193 1929 1 1914 C02HBa0303I24.2 133000 60080 62257 4 928,515,102,368, 15,943,1458,1560, 60080,61125,61710,61889, 463 1 0 0 0 0 0 0 - SGN-E688295 464 0 464 C02HBa0303I24.2 133000 46676 47140 1 464, 0, 46676, 546 0 0 0 0 0 0 0 + SGN-E201126 546 0 546 C02HBa0303I24.2 133000 54123 54669 1 546, 0, 54123, 424 33 0 0 0 0 0 0 + SGN-E319513 457 0 457 C02HBa0303I24.2 133000 54510 54967 1 457, 0, 54510, 201 8 0 2 4 156 4 425 - SGN-E320805 439 72 439 C02HBa0303I24.2 133000 30361 30997 6 128,14,7,44,4,14, 0,128,148,184,348,353, 30361,30497,30518,30543,30979,30983, 78 4 0 0 1 18 1 16 + SGN-E311034 559 97 197 C02HBa0303I24.2 133000 81601 81699 2 25,57, 97,140, 81601,81642, 30 0 0 0 0 0 0 0 - SGN-E378337 745 286 316 C02HBa0303I24.2 133000 104564 104594 1 30, 429, 104564, 646 0 0 0 1 1 0 0 - SGN-E367859 647 0 647 C02HBa0303I24.2 133000 46239 46885 2 69,577, 0,70, 46239,46308, 545 17 0 0 8 34 4 37 + SGN-E368232 618 14 610 C02HBa0303I24.2 133000 30165 30764 11 24,13,30,10,27,5,189,41,43,64,116, 14,39,55,86,98,126,139,328,369,426,494, 30165,30189,30219,30249,30259,30286,30296,30493,30541,30584,30648, 30 0 0 0 0 0 0 0 - SGN-E374379 719 649 679 C02HBa0303I24.2 133000 114699 114729 1 30, 40, 114699, 145 8 0 0 0 0 1 49 + SGN-E375221 716 0 153 C02HBa0303I24.2 133000 129435 129637 2 143,10, 0,143, 129435,129627, 85 5 0 0 0 0 0 0 - SGN-E374989 589 0 90 C02HBa0303I24.2 133000 25781 25871 1 90, 499, 25781, 640 17 0 0 0 0 0 0 - SGN-E375056 685 0 657 C02HBa0303I24.2 133000 44289 44946 1 657, 28, 44289, 619 0 0 0 0 0 0 0 - SGN-E375057 619 0 619 C02HBa0303I24.2 133000 45710 46329 1 619, 0, 45710, 231 2 0 0 0 0 0 0 - SGN-E376991 233 0 233 C02HBa0303I24.2 133000 46652 46885 1 233, 0, 46652, 105 6 0 0 1 1 3 13 + SGN-E377955 647 452 564 C02HBa0303I24.2 133000 78363 78487 4 19,29,36,27, 452,471,500,537, 78363,78392,78422,78460, 356 1 0 0 0 0 0 0 - SGN-E377087 357 0 357 C02HBa0303I24.2 133000 46528 46885 1 357, 0, 46528, 105 6 0 0 1 1 3 13 + SGN-E377794 657 443 555 C02HBa0303I24.2 133000 78363 78487 4 19,26,39,27, 443,462,488,528, 78363,78392,78419,78460, 517 3 0 0 1 1 0 0 - SGN-E389472 521 0 521 C02HBa0303I24.2 133000 45993 46513 2 13,507, 0,14, 45993,46006, 647 0 0 1 1 1 1 2 - SGN-E389544 649 0 649 C02HBa0303I24.2 133000 45963 46613 2 11,637, 0,12, 45963,45976, 725 1 0 0 0 0 0 0 - SGN-E389651 726 0 726 C02HBa0303I24.2 133000 45994 46720 1 726, 0, 45994, 703 1 0 0 1 1 3 3 - SGN-E389803 705 0 705 C02HBa0303I24.2 133000 46179 46886 5 4,6,10,666,18, 0,5,11,21,687, 46179,46183,46190,46201,46868, 699 0 0 0 1 1 1 1 - SGN-E389909 708 8 708 C02HBa0303I24.2 133000 46178 46878 3 23,5,671, 0,23,29, 46178,46202,46207, 743 1 0 0 0 0 0 0 - SGN-E389982 744 0 744 C02HBa0303I24.2 133000 46142 46886 1 744, 0, 46142, 33 0 0 0 1 1 0 0 + SGN-E394591 221 147 181 C02HBa0303I24.2 133000 104565 104598 2 29,4, 147,177, 104565,104594, 48 0 0 0 1 165 1 110931 - SGN-E395485 595 360 573 C02HBa0303I24.2 133000 3748 114727 2 20,28, 22,207, 3748,114699, 30 0 0 0 0 0 0 0 + SGN-E398265 576 147 177 C02HBa0303I24.2 133000 104564 104594 1 30, 147, 104564, 58 0 0 0 2 13 6 92 + SGN-E540310 665 513 584 C02HBa0303I24.2 133000 3750 3900 7 18,6,9,4,4,6,11, 513,532,538,559,563,567,573, 3750,3773,3801,3869,3874,3879,3889, 31 0 0 0 0 0 0 0 + SGN-E546018 675 562 593 C02HBa0303I24.2 133000 51264 51295 1 31, 562, 51264, 69 3 0 0 1 3 0 0 - SGN-E547448 654 78 153 C02HBa0303I24.2 133000 26449 26521 2 6,66, 501,510, 26449,26455, 710 0 0 0 0 0 0 0 - SGN-E549694 710 0 710 C02HBa0303I24.2 133000 46176 46886 1 710, 0, 46176, 762 0 0 0 0 0 0 0 - SGN-E549699 762 0 762 C02HBa0303I24.2 133000 45964 46726 1 762, 0, 45964, 718 0 0 0 0 0 0 0 - SGN-E549965 718 0 718 C02HBa0303I24.2 133000 46168 46886 1 718, 0, 46168, 652 2 0 0 0 0 1 1 - SGN-E550126 654 0 654 C02HBa0303I24.2 133000 45962 46617 2 15,639, 0,15, 45962,45978, 696 0 0 0 1 1 1 1 - SGN-E550150 703 6 703 C02HBa0303I24.2 133000 46183 46880 3 18,9,669, 0,18,28, 46183,46202,46211, 702 0 0 0 1 1 1 1 - SGN-E550265 703 0 703 C02HBa0303I24.2 133000 45954 46657 3 21,130,551, 0,21,152, 45954,45976,46106, 696 1 0 0 1 2 2 2 - SGN-E550320 707 8 707 C02HBa0303I24.2 133000 46179 46878 3 33,4,660, 0,33,39, 46179,46213,46218, 665 1 0 0 0 0 0 0 - SGN-E550402 666 0 666 C02HBa0303I24.2 133000 45991 46657 1 666, 0, 45991, 463 1 0 0 0 0 0 0 - SGN-E551270 464 0 464 C02HBa0303I24.2 133000 46676 47140 1 464, 0, 46676, 154 8 0 0 2 112 2 150 + SGN-E203150 480 109 383 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 109,283,326, 81387,81601,81642, 447 2 0 0 0 0 0 0 - SGN-E235295 449 0 449 C02HBa0303I24.2 133000 45880 46329 1 449, 0, 45880, 389 3 0 0 0 0 0 0 - SGN-E236475 392 0 392 C02HBa0303I24.2 133000 46493 46885 1 392, 0, 46493, 409 1 0 0 0 0 0 0 - SGN-E240894 414 0 410 C02HBa0303I24.2 133000 46475 46885 1 410, 4, 46475, 492 9 0 0 0 0 0 0 - SGN-E241149 501 0 501 C02HBa0303I24.2 133000 46384 46885 1 501, 0, 46384, 538 0 0 0 0 0 0 0 - SGN-E228277 538 0 538 C02HBa0303I24.2 133000 45791 46329 1 538, 0, 45791, 87 5 0 0 0 0 0 0 - SGN-E228212 223 3 95 C02HBa0303I24.2 133000 25781 25873 1 92, 128, 25781, 84 6 0 0 0 0 0 0 - SGN-E228026 567 0 90 C02HBa0303I24.2 133000 25781 25871 1 90, 477, 25781, 277 0 0 0 0 0 0 0 - SGN-E228109 277 0 277 C02HBa0303I24.2 133000 46608 46885 1 277, 0, 46608, 490 1 0 0 0 0 0 0 - SGN-E240029 491 0 491 C02HBa0303I24.2 133000 46394 46885 1 491, 0, 46394, 83 5 0 0 0 0 0 0 - SGN-E243942 336 0 88 C02HBa0303I24.2 133000 25781 25869 1 88, 248, 25781, 459 31 0 0 4 25 6 43 - SGN-E241665 515 0 515 C02HBa0303I24.2 133000 25820 26353 10 101,95,28,13,30,14,9,4,157,39, 0,110,205,234,247,289,303,312,316,476, 25820,25929,26027,26055,26071,26101,26116,26128,26157,26314, 85 5 0 0 0 0 0 0 - SGN-E228353 538 0 90 C02HBa0303I24.2 133000 25781 25871 1 90, 448, 25781, 580 0 0 0 0 0 0 0 - SGN-E233081 580 0 580 C02HBa0303I24.2 133000 46305 46885 1 580, 0, 46305, 58 4 0 0 0 0 1 17 - SGN-E726528 638 562 624 C02HBa0303I24.2 133000 66533 66612 2 54,8, 14,68, 66533,66604, 73 2 0 0 0 0 0 0 - SGN-E731745 835 6 81 C02HBa0303I24.2 133000 81525 81600 1 75, 754, 81525, 32 1 0 0 0 0 0 0 + SGN-E720715 648 374 407 C02HBa0303I24.2 133000 114693 114726 1 33, 374, 114693, 844 3 0 0 0 0 4 1019 + SGN-E740175 850 3 850 C02HBa0303I24.2 133000 52049 53915 5 65,67,254,354,107, 3,68,135,389,743, 52049,52410,52850,53380,53808, 813 4 0 0 0 0 1 476 + SGN-E698904 828 11 828 C02HBa0303I24.2 133000 54098 55391 2 617,200, 11,628, 54098,55191, 78 4 0 0 1 18 1 16 + SGN-E700757 842 104 204 C02HBa0303I24.2 133000 81601 81699 2 25,57, 104,147, 81601,81642, 154 8 0 0 2 112 2 150 + SGN-E700953 843 95 369 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 95,269,312, 81387,81601,81642, 853 2 0 0 0 0 3 697 + SGN-E702009 855 0 855 C02HBa0303I24.2 133000 53648 55200 4 43,137,666,9, 0,43,180,846, 53648,53808,54049,55191, 154 8 0 0 2 112 2 150 + SGN-E706142 826 95 369 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 95,269,312, 81387,81601,81642, 32 1 0 0 0 0 0 0 + SGN-E711651 620 453 486 C02HBa0303I24.2 133000 114693 114726 1 33, 453, 114693, 795 1 0 1 0 0 4 521 + SGN-E713484 797 0 797 C02HBa0303I24.2 133000 55341 56659 5 291,195,57,63,191, 0,291,486,543,606, 55341,55759,56129,56320,56468, 51 0 0 3 1 7 2 19 + SGN-E713544 663 592 653 C02HBa0303I24.2 133000 124913 124986 3 11,17,26, 592,610,627, 124913,124930,124960, 31 0 0 0 0 0 0 0 + SGN-E244201 560 298 329 C02HBa0303I24.2 133000 114699 114730 1 31, 298, 114699, 31 0 0 0 0 0 0 0 - SGN-E244201 560 298 329 C02HBa0303I24.2 133000 104561 104592 1 31, 231, 104561, 37 0 0 1 1 6 1 16 - SGN-E242278 536 483 527 C02HBa0303I24.2 133000 51261 51315 2 30,8, 9,45, 51261,51307, 606 0 0 0 0 0 2 350 + SGN-E248994 606 0 606 C02HBa0303I24.2 133000 52914 53870 3 190,354,62, 0,190,544, 52914,53380,53808, 91 7 0 0 0 0 0 0 + SGN-E250041 458 10 108 C02HBa0303I24.2 133000 129504 129602 1 98, 10, 129504, 234 16 0 0 0 0 1 49 + SGN-E250127 421 0 250 C02HBa0303I24.2 133000 129338 129637 2 240,10, 0,240, 129338,129627, 229 14 0 0 0 0 1 49 + SGN-E248730 546 0 243 C02HBa0303I24.2 133000 129345 129637 2 233,10, 0,233, 129345,129627, 145 8 0 0 0 0 1 49 + SGN-E251501 608 0 153 C02HBa0303I24.2 133000 129435 129637 2 143,10, 0,143, 129435,129627, 153 9 0 0 2 112 2 150 + SGN-E250153 613 52 326 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 52,226,269, 81387,81601,81642, 232 16 0 0 0 0 1 49 + SGN-E254688 314 0 248 C02HBa0303I24.2 133000 129340 129637 2 238,10, 0,238, 129340,129627, 163 11 0 0 0 0 0 0 + SGN-E255405 647 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 163 11 0 0 0 0 0 0 + SGN-E256408 584 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 71 4 0 0 1 1 1 16 + SGN-E259615 606 503 579 C02HBa0303I24.2 133000 30145 30236 2 57,18, 503,561, 30145,30218, 163 11 0 0 0 0 0 0 + SGN-E259955 605 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 163 11 0 0 0 0 0 0 + SGN-E260221 722 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 145 8 0 0 0 0 1 49 + SGN-E260587 778 0 153 C02HBa0303I24.2 133000 129435 129637 2 143,10, 0,143, 129435,129627, 145 8 0 0 0 0 1 49 + SGN-E260602 740 0 153 C02HBa0303I24.2 133000 129435 129637 2 143,10, 0,143, 129435,129627, 163 11 0 0 0 0 0 0 + SGN-E261435 827 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 163 11 0 0 0 0 0 0 + SGN-E263280 780 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 163 11 0 0 0 0 0 0 + SGN-E261191 281 0 174 C02HBa0303I24.2 133000 129428 129602 1 174, 0, 129428, 154 8 0 0 2 112 2 150 - SGN-E277246 418 34 308 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 110,284,327, 81387,81601,81642, 448 20 0 0 6 20 5 99 + SGN-E279240 501 0 488 C02HBa0303I24.2 133000 23949 24516 9 37,231,20,17,17,5,120,6,15, 0,42,273,293,311,330,336,466,473, 23949,23994,24242,24264,24281,24298,24303,24493,24501, 30 0 0 0 0 0 0 0 - SGN-E273474 498 370 400 C02HBa0303I24.2 133000 51259 51289 1 30, 98, 51259, 569 0 0 0 0 0 0 0 - SGN-E272159 569 0 569 C02HBa0303I24.2 133000 46665 47234 1 569, 0, 46665, 145 8 0 0 2 112 2 150 + SGN-E294913 360 95 360 C02HBa0303I24.2 133000 81387 81690 3 80,25,48, 95,269,312, 81387,81601,81642, 145 8 0 0 2 112 2 150 - SGN-E294914 360 0 265 C02HBa0303I24.2 133000 81387 81690 3 80,25,48, 95,269,312, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E292458 445 95 369 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 95,269,312, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E296621 445 95 369 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 95,269,312, 81387,81601,81642, 101 4 0 0 1 94 1 134 + SGN-E300142 304 73 272 C02HBa0303I24.2 133000 81387 81626 2 80,25, 73,247, 81387,81601, 154 8 0 0 2 112 2 150 + SGN-E306268 419 6 280 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 6,180,223, 81387,81601,81642, 199 14 0 0 1 9 1 8 - SGN-E332410 721 0 222 C02HBa0303I24.2 133000 25781 26002 2 140,73, 499,648, 25781,25929, 37 0 0 0 0 0 1 14 - SGN-E326023 496 126 163 C02HBa0303I24.2 133000 104541 104592 2 7,30, 333,340, 104541,104562, 33 0 0 0 1 1 0 0 + SGN-E333458 581 127 161 C02HBa0303I24.2 133000 104565 104598 2 29,4, 127,157, 104565,104594, 33 0 0 0 1 1 0 0 + SGN-E334222 677 127 161 C02HBa0303I24.2 133000 104565 104598 2 29,4, 127,157, 104565,104594, 36 0 0 0 1 1 0 0 - SGN-E333750 440 195 232 C02HBa0303I24.2 133000 51263 51299 2 29,7, 208,238, 51263,51292, 154 8 0 0 2 112 2 150 + SGN-E330481 626 93 367 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 93,267,310, 81387,81601,81642, 37 0 0 0 0 0 1 14 - SGN-E331093 512 142 179 C02HBa0303I24.2 133000 104541 104592 2 7,30, 333,340, 104541,104562, 367 16 0 2 7 176 8 447 - SGN-E327106 628 65 626 C02HBa0303I24.2 133000 30165 30997 11 7,5,48,9,118,115,14,7,44,4,14, 2,9,15,77,86,209,324,344,380,544,549, 30165,30173,30178,30241,30252,30374,30497,30518,30543,30979,30983, 154 8 0 0 2 112 2 150 + SGN-E323599 571 92 366 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 92,266,309, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E313955 546 148 422 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 148,322,365, 81387,81601,81642, 78 4 0 0 1 18 1 16 + SGN-E314074 559 76 176 C02HBa0303I24.2 133000 81601 81699 2 25,57, 76,119, 81601,81642, 154 8 0 0 2 112 2 150 + SGN-E315123 478 100 374 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 100,274,317, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E312729 644 95 369 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 95,269,312, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E338278 436 84 358 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 84,258,301, 81387,81601,81642, 154 8 0 0 2 112 2 150 + SGN-E337667 478 93 367 C02HBa0303I24.2 133000 81387 81699 3 80,25,57, 93,267,310, 81387,81601,81642, 96 4 0 0 1 52 1 4 - SGN-E343709 734 464 616 C02HBa0303I24.2 133000 81496 81600 2 25,75, 118,195, 81496,81525, 378 0 0 0 0 0 0 0 - SGN-E355272 388 0 378 C02HBa0303I24.2 133000 69825 70203 1 378, 10, 69825, 493 0 0 0 0 0 0 0 - SGN-E357593 505 0 493 C02HBa0303I24.2 133000 59942 60435 1 493, 12, 59942, 58 0 0 0 2 13 6 92 + SGN-E350440 353 179 250 C02HBa0303I24.2 133000 3750 3900 7 18,6,9,4,4,6,11, 179,198,204,225,229,233,239, 3750,3773,3801,3869,3874,3879,3889, 583 8 0 0 0 0 2 649 + SGN-E366263 591 0 591 C02HBa0303I24.2 133000 52415 53655 3 62,254,275, 0,62,316, 52415,52850,53380, 559 8 0 0 0 0 2 649 + SGN-E366431 567 0 567 C02HBa0303I24.2 133000 52415 53631 3 62,254,251, 0,62,316, 52415,52850,53380, 69 3 0 0 1 3 0 0 - SGN-E361117 727 77 152 C02HBa0303I24.2 133000 26449 26521 2 6,66, 575,584, 26449,26455, 149 8 0 0 2 115 2 153 - SGN-E694602 814 74 346 C02HBa0303I24.2 133000 81389 81699 3 78,25,54, 468,640,686, 81389,81601,81645,