<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:02:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337007" ref_strand="+" ref_description="SGN-E337007 [cTOE-20-J3]">
      <seq>tcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggctgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggtgaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32906" stop="31770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32606" g_stop="32070" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E337007" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32606" e_stop="32070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGC-GACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAAATGGCTACCACATCCAAGGAAGGCAGCAGGTGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCCATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGACAAG</genome_strand>
        <mrna_strand>TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCTGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGTGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336892" ref_strand="+" ref_description="SGN-E336892 [cTOE-5-J3]">
      <seq>tagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggggaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatcccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32909" stop="31792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32609" g_stop="32092" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E336892" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32609" e_stop="32092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAAATGGCTACCACATCCAAGGAAGGCAGCAGGTGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCCATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAA</genome_strand>
        <mrna_strand>TAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338003" ref_strand="+" ref_description="SGN-E338003 [cTOE-14-E10]">
      <seq>atatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggggaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatccctttggatcttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32904" stop="31794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32604" g_stop="32094" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E338003" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32604" e_stop="32094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAAATGGCTACCACATCCAAGGAAGGCAGCAGGTGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCCATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTT</genome_strand>
        <mrna_strand>ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337619" ref_strand="+" ref_description="SGN-E337619 [cTOE-11-P21]">
      <seq>gtagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32910" stop="31914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32610" g_stop="32214" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E337619" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32610" e_stop="32214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAAATGGCTACCACA</genome_strand>
        <mrna_strand>GTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336916" ref_strand="+" ref_description="SGN-E336916 [cTOE-5-L16]">
      <seq>tagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32909" stop="31926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32609" g_stop="32226" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E336916" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32609" e_stop="32226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAA</genome_strand>
        <mrna_strand>TAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336957" ref_strand="+" ref_description="SGN-E336957 [cTOE-5-K16]">
      <seq>tatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32903" stop="31982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32603" g_stop="32282" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E336957" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32603" e_stop="32282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCA</genome_strand>
        <mrna_strand>TATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337576" ref_strand="+" ref_description="SGN-E337576 [cTOE-11-B3]">
      <seq>ccagtagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="32913" stop="32002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32613" g_stop="32302" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E337576" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32613" e_stop="32302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAGTCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGAT</genome_strand>
        <mrna_strand>CCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337304" ref_strand="+" ref_description="SGN-E337304 [cTOE-7-H4]">
      <seq>ggaggcccgcagcgatactgacgtgcaaatcgttcgtctgacttgggtgtaggggcgaaagactaatcgaaccgtctagtagctggttccctccgaagtttccctcaggatagctggagctcgcgtgcgagttctatcgggtaaagccaatgattagaggcctcgggggcgcaacgccctcgacctattctcaaactttaaataggtaggacggcgcggctgctttgttgagccgcgccacggaatcaagagctgcaagtgggccatttttggtaagcagaactggcgatgcgggatgaaccggaagccgggttacggtgccaaactgcgcgctaacctatatcccacaaagggtgttggtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="48440" stop="47476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48140" g_stop="47776" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E337304" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48140" e_stop="47776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCCCGCAGCGATAGTGACGTGCAAATCGATCATCTGACTTGGGTATAGGGGCGAAAGACTAATAGAACCGTCTAATAGCTGGTTCCGTTCGAAGTTTCCATGAGTATAGCTGGAGCTCGCATGCGAGTTCTATCGGGTAAAGTCAATGATTAGAGGCCTCGGCGGCGCAACGCCCTCGACCTATTCTCAAACTTCAAATAGGTAGGACGGTGCGACTTCTTTGTTGAGCCGCGCCACATAATCAAGAGATCCAAGTGCGCCATTTTTGGTAAGCCGAACTGGCGATGCAGGATGAATCGGAAGCCGGGTTACGCTGCGAAACTGCGTGCTAACCTAGATCCCACAAAGGGTGTTGGTCAAT</genome_strand>
        <mrna_strand>GGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTGTAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGCGTGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCCTCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCCGCGCCACGGAATCAAGAGCTGCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCAAACTGCGCGCTAACCTATATCCCACAAAGGGTGTTGGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337751" ref_strand="-" ref_description="SGN-E337751 [cTOE-17-B21]">
      <seq>aatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtccctgttaatcattactccgatcccgaaggccaacgtaataggaccgaaatcctataatgttatcccatgctaatgtatacagagcgtaggcttgctttgagcactctaatttcttcaaagtaacagcgccggaggcacgacccggccaattaaggccaggagcgcatcgccgacagaagggacgagacgaccggtgcacacctagggcggaccggccggcccatcccaaagtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgctggcaccagacttgccctccaatggatcctcgttaagggatttagattgtactcattccaattaccagactcatagagcccggtattgttatttattgtcactacctccccgtgtcaggattgggtaatttgcgcgcctgctgccttccttggatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="+" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="25349" stop="128035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73189" g_stop="73351" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73352" i_stop="73912" i_length="561">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73913" g_stop="74286" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="538" r_length="374" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="+" ref_id="SGN-E337751" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337751" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73189" e_stop="73351"/>
          <exon e_start="73913" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTT-GCAGTTGTTCATCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCTGACTATCCTTGTTAATCATTACTCCTATCCTGAAGGCCAACGTAATATGATCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGCATAGTGTCACGGACTTTTTTATTCGGACAATACTCCGTGCGGCACTTGACAGTTTACTCACGATTCTTGCACGTTCTTGCAAACTCAAGTTAGCCTCTCACTCGGATTGCTAAGAAAATAAGAAGTAGACAGAATTTTGGAAGAAGGAACTTCTATTACTTGCTGAAATTATTGGATGCTTTACAAGTAAAATGAACTACTATTTATACTACTCTAATGCCTAAGAGTTAGTAAATGCTACACTATAGAAGTTCCTAAGTCTATGCCTACAAGACATGCTTCTAAGTCTTCCAAAAAGGACTCCTAGATGCTCCTAGTCTGCCCTAACGCCTAGAGGCCTTGAACAACCTCTTCAATGCTTGTAACTGCCGCCCCACTACCTGCTGTAACAGCTGTAACGGGTGTAACATCCGTAACAGCTGAAACTGTTGTAACGGCTGCCTCTCCAACTGCTGCCTGCCCATTGGCCTGCTGGCCGGCTTGTGCTATATGCCCCCTTGCGCCTGCTGCTGGCTGCCAGGTTGGGTGGCGTTCTGCCTGGATGGATGGCGGGACGTCATAGTAGGATTTCATTGAGCACTCTAA-TTCTTCAAAGTAACAGCGTCGGAGGCATGACCCGACCACTAAACGCCATGAGCGCATCACCCGACAGAAGGGACGAGACGACCGGTGCACATCTAGGGCGGACCGGCCGGCCCATCCCAAAGTCCAACTACGAGCTTTTTAATTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGACTGCTTGCACCAGACTTGCCCTCCAATGGATCCTTGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATGGAGCCTAGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGGTTGGGTAATTTGCACACCTACTGCCTTCCTTGGATGTGG</genome_strand>
        <mrna_strand>AATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATC-GCCGACAGAAGGGACGAGACGACCGGTGCACACCTAGGGCGGACCGGCCGGCCCATCCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337395" ref_strand="-" ref_description="SGN-E337395 [cTOE-18-E24]">
      <seq>tacgaatgcccccgactgtccctgttaatcattactccgatcccgaaggccaacgtaataggaccgaaatcctataatgttatcccatgctaatgtatacagagcgtaggcttgctttgagcactctaatttcttcaaagtaacagcgccggaggcacgacccggccaattaaggccaggagcgcatcgccgacagaagggacgagacgaccggtgcacacctagggcggaccggccggcccatcccaaagtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgctggcaccagacttgccctccaatggatcctcgttaagggatttagattgtactcattccaattaccagactcatagagcccggtattgttatttattgtcactacctccccgtgtcaggattgggtaatttgcgcgcctgctgccttccttggatgtggtagccgtttctcaggctccctctccggaatcgaaccctaattctccgtcacccgtcaccaccatggtaggccactatcctaccatcgaaagttgatagggcagaaatttgaatgatgcgtcgccggcacgatggccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="+" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="25408" stop="128175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73247" g_stop="73351" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73352" i_stop="73912" i_length="561">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73913" g_stop="74425" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="618" r_length="513" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="+" ref_id="SGN-E337395" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337395" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73247" e_stop="73351"/>
          <exon e_start="73913" e_stop="74425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAATGCCCCTGACTATCCTTGTTAATCATTACTCCTATCCTGAAGGCCAACGTAATATGATCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGCATAGTGTCACGGACTTTTTTATTCGGACAATACTCCGTGCGGCACTTGACAGTTTACTCACGATTCTTGCACGTTCTTGCAAACTCAAGTTAGCCTCTCACTCGGATTGCTAAGAAAATAAGAAGTAGACAGAATTTTGGAAGAAGGAACTTCTATTACTTGCTGAAATTATTGGATGCTTTACAAGTAAAATGAACTACTATTTATACTACTCTAATGCCTAAGAGTTAGTAAATGCTACACTATAGAAGTTCCTAAGTCTATGCCTACAAGACATGCTTCTAAGTCTTCCAAAAAGGACTCCTAGATGCTCCTAGTCTGCCCTAACGCCTAGAGGCCTTGAACAACCTCTTCAATGCTTGTAACTGCCGCCCCACTACCTGCTGTAACAGCTGTAACGGGTGTAACATCCGTAACAGCTGAAACTGTTGTAACGGCTGCCTCTCCAACTGCTGCCTGCCCATTGGCCTGCTGGCCGGCTTGTGCTATATGCCCCCTTGCGCCTGCTGCTGGCTGCCAGGTTGGGTGGCGTTCTGCCTGGATGGATGGCGGGACGTCATAGTAGGATTTCATTGAGCACTCTAA-TTCTTCAAAGTAACAGCGTCGGAGGCATGACCCGACCACTAAACGCCATGAGCGCATCACCCGACAGAAGGGACGAGACGACCGGTGCACATCTAGGGCGGACCGGCCGGCCCATCCCAAAGTCCAACTACGAGCTTTTTAATTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGACTGCTTGCACCAGACTTGCCCTCCAATGGATCCTTGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATGGAGCCTAGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGGTTGGGTAATTTGCACACCTACTGCCTTCCTTGGATGTGGTAGCCATTTCACAGGCTCCCTCTTCGGAATCGAACCCTAATTCTCCGTCACACTTCACCACCATGGTAGGCCACTATCCTATCATCAAAAGTTCATAGGGCAGAAATTTGAATGATGCGTCGCCGGCATGATGGCCGTG</genome_strand>
        <mrna_strand>TACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATC-GCCGACAGAAGGGACGAGACGACCGGTGCACACCTAGGGCGGACCGGCCGGCCCATCCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338035" ref_strand="+" ref_description="SGN-E338035 [cTOE-14-D2]">
      <seq>atgggccggccggtccgccctaggtgtgcaccggtcgtctcgtcccttctgtcggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctgtatacattagcatgggataacattataggatttcggtcctattacgttggccttcgggatcggagtaatgattaacagggacagtcgggggcattcgtatttcatagtcagaggtgaaattcttggatttatgaaagacgaacaactgcgaaagcatttgccaaggatgttttcattaatcaagaacgaaagttgggggctcgaagacgatcagataccgtcctagtctcaaccataaacgatgccgaccagggatcggcggatgttgcttttaggactccgccggcaccttatgagaaatcaaagtttttgggttccggggggagtatggtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="127800" stop="49972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96054" g_stop="95920" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95919" i_stop="89994" i_length="5926">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89993" g_stop="89649" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="480" r_length="345" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E338035" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96054" e_stop="95920"/>
          <exon e_start="89993" e_stop="89649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGCCGACCGGTCCACCCTAGATGTGCACCGGTCATCTCGTCCCTTCTGTCGGGCGATGCGCTCATGGCATTTAGTGGCTGGGTCATGCCTCCGACGCTGTTACTTTGAAG-AATTGGAGTGCTCAATGAAAGCGTACTGTGACGTCCCGCCATCCATCCAGGAAGAACGCCACCCAACCTGGCAGCCACCAGCAGGCGCAAGGGGGGAGACAGCCCAAGCCGTCCAGTAGGCCAAGGGGCAGGCAGCAGTTGGAGAGGCAGCCATTACAACAGTTACGGCAGTTACAGCTGTTAAAGCAAGTAGTGGGGCGGCAATTACAAGCATTGAAGAGGCTTGTTCAAGGCCTCTAGGCGTTAGGGCATACTAGGAGCATCTAGGAGTCATTTTTGGAAGAGGTAGAAGCATGTCTTGTAGGCATAGACTTAAGAACTTGTATAGTGTAGCATTTACTAACTCTTAGGCATTAGAGTAGTATAAATAGTAGTTCATTTTACTTGTAAAGCATCCAATAATTTCAGCAAGTAATAGAAGTTCCTTCTTCCAAATTTCTGTCTACTTATTAGTTTCTTAGCGATCCGAGTGAGAGGCTAACTTGAGTTTGCCAGAACGTGCAAGAATCGTGAGTATACCGTCAAGTGCCGCACGGAGTATTGTCCGAATCAAAAAGTCCGTGACAATTGGTATCAGAGCAGGTTCATCGTAATAGAATGACAAACGAAGGATACGGAAGCGGCGCTAGCAACACCCCTAACGTTCAGGTAGTAAAGAAGAACAAGAAAGGGAAGAAGCATCAGAAGGGAAATGAACCCAATCTGTGCAATCTGCCCAATCTTCCACCCACTGATCCTCCACCAACTGATCTTCCACTAGGCGGTCTTCCATCAGGCAATCTTCCACCAGGCTTTCTTCCACCAGGCGGTCTTCCATCAGGCGGTCTACCACCAGACAATCCTCCACCAAGCGATGGACAAACATCTTTCCAGCATAATATTGTCGATGGAAGTGACGACGACGACAACGAAGATACCATCGACGTCACTTTTGGACATCAATGTCTTACAAGCGTCGAGAGGGCAAGGCTAGCTGTTGAGATTTTAGGCCAGCGCTTGAATGGGTTGGACAGTGATGTCAAAGACCTGGAGAGCACTCCCTTGAGCAAGTTGACGCCATTCGGAAGGAGTTGGAGGTACGCAAGCGGTCTCTATTAGCGATGAAGGAAACCATTAATTCCTTGGAGTTCAGATTTTTGGACGCCCTTACGACGATCCAGACGCTGAAGAACAAGGTAGAAGCTCTTGAAGAAGAGAGGGAGGTCAGAGCATCAACATCACTTGGCCAGGAAAGGGAGTCCAGAGTCGAGGTTCTCAAGCCACCAACATTCAAGGGTGTCCGCGACGCCCTAGAGGTAGGAAATTTCCTATGGCACTTCGAAAATTATTTCAGGTGTAATCGGGTCAGGAGCGATGCAAACAAGATCAACACTGTCGTGTTGTATCTTTTGGATGTAGCCATGTTGTGGTGGAAACGCAAAGATGCCGAGATCAAGAGGGGCACACGCACCATCAATACATTGCAACAATTCCTTGAGGAATTCAAGAAAGATTTCTTCCCCAACAATGCTATTTATGAAATGAAACGCAAACTCCAGGAGTTGAAGCAGACGGGAAGTATTAGGGCATATATGAAAGAGTTCACAATCTTGACCCTCAAAATTCCCTAACTCACGGAAGATGATAGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAATCATTGATGAGGCCATCACTCAAGCCGAAACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGCAAGGAGGCAGGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGTAGAGACACGCCCAAGCCCGATGGCAGACGGTTTGAACGTCAGAAGTACTCGGAGAAGCGGACGCATTCCAGCAATGGAGACAGGTGCTATATATGCGGCGGACCACACGGTTATGCCAGGTGCCCAGATATGAAGAGCCTTAGTGCCATCGTTCGTGAGCAGAAGGAAAAGGAGGCACAAGACAAGGCGAAATCGGCAGACACCCTTCAGTTGGGGCATGGTTGGAATCTGTGGAGCCATAGCCAAACAGGCCTTCCACTCGAGGGATTTCAGTACGCAATATATGGATATCTCTATCAATGGGCAACTAGTTCGGGCCATGGTAGATTCCGGGGATGAAGCTAATATCATGACCAAGACGGCGGCAGAGAAATTGGGACTGAAAATTGTTCCAAGTAACAATCGCCTCAAGACGGTCAACGCCCCACCAACTCTCGTGTGTCGAATTGCTCATGGGGTCAGCATCACTTTAGGACGGTGGAGAGGTAATACGAATTTTACCGTAGCTCCTTTGGACATATCCGATGTTATTCTTGGACAGGAATTCTTTCAGTGTTGCCACACGATGATTGATCCCTACCTTCAACAACTCATGGTGATGGAAGGGGAAGGGTTTTGTATGGTGCCTCTTGTTAGGGTGCCGAACAAAGACGGATATGCCCAATTGTCGGCCATGCAGATTGTGAAGGGCCTGAAGAAAGGAGCACCAACCTTCTTAGTCACCATCGCAAGTTCGGGTGAAGACCATGGTGCTATGGAGCCATTGCCACCTATCATAGAAACTGTTTTGCAGGAAAACAGTGATGTGATGCCGGAGGAGCTGCCAAAAACTCTACCTCCAAGGCGTGAGGTAGACCACATGATCGAGTTGGAGGCGGGAGCCAAGCCACCTGCGCTTGCACCTTATCGCATGGCTTCACCTGAGTTAGAGGAACTTAGGAAGCAGTTGAAAGAGCTCCTCAAAGCAGGTCACATTTGTCCATCCAAGGCACCCTATGGAGCGTCGGTGCTGTTTCAGAAAAAGAAAGATGGATCGATGCGTCTATGCATTGACTACAGAGCTCTCAACAAGATCACTATTCGGAACAAGTATCCAATCCCGCTGATCGCAGATTTGTTTGATCGTCTTGGAGAGGCCAAGTACTTCACCAAGATGGATCTTCGAAAAGTCTACTATCAAGTGCGCATTGCAGAGGGGATGAGCCAAAGACAGCATGCGTGACCAGGTATGGAGAATTTGAATGGTTAGTGATTCCCTTCGGCTTAACCAACGCACCTACCATATTTTGCACGCTAATGAACGAGATTTTATGTCCCTACTTGGACCAGTTCATTGTAGTGTACTTAGATGACATAGTCGTCTATAGTAGCACTTTGCAGGAACATGTGGAGCACTTGAAGAAGGTCTTCAAAGTCTTGCGGGAGAATCAGCTTTATGTCAAGCGGGAGAAGTGCGAGTTCGCCCAACCAAAGATACACTTCTTGGGCCATGTGATCAGATAAGGTGAACTTCGTATGGATGAGGCAAAGGTAAAGGCGATCCAAGATTGGGAAGCGCCGACGAAAGTGACCGAGCTACGTTCTTTTCTTGGACTTGCTAATTATTATCGCAGGTTCATTAGCGGGTACTCCACTATAGCTTCCCCACTGACCGAGCTGCTGAAGAAGAACAGTCTTTGGCTGTGTAGCGAGGAGTGCCAGGAAGCATTTGAAGGTCTAAAGGTTGCGGTTACTGAAGAACCGGTATTGATGCTGCCTGACTTCACCAAGACCTTCGAGATCCATGCGGATGCTTCTAATTTTTCCATTGGGGGAGTCTTTATGCAGGAGAAGCACCCATAGCTTTTGAAAGCCGGAAGCTGAATGAAGCTGAACGACAGTACACTGTGCAGGAGAAGGAGATGATGGTCATTGTGCATTGTCTACGTACATGGAGACACTATCTACTAGGCTCCAAATTTGTAGTGAAAACCGACAACATTGCCACTAGCTATTTTCAATAACAGAAGAAGATCACACCAAAGCAGGCTCGTTGGCAGGAATTCTTGGCCAAATTTGACTACAACTTGGAGCACAAACCAGGAAGGGGCAATGTGGTAACTGATGCATTGAGCAGGAAGACTGATTTAGCGGCCATCTCCTCAGTCCGTAGTGAATTTGAAGGTGCAATCAATGATGGTATGCAATGCGATACGGAAGCCAAAAAAGATTATGCAGTTGGCTGCTCAAGGCCAAACCAAACGGTTTTGGGTAGAAGACGGATTCTTGCTTACCACTGGCTGGAGGATTTATGTACCAAAGTTTGGATTCATCAGGCGGCGAATTATCAAAGAAAGCCACAACACTCCGTGGGCTGGGCATCCTGGACAGAAGAGAACGAGGGCATTAGTGGAGGCCTTCTATTTCTTTCCATGAATGCGGGAAGAAATCGAGCAGTATGTGCAGACTTTTCTTGTGTGCCAGCAAGACAAGGTGGAGCAAAGGCAACAAGGAGGGCTGTTGGAGCCATTACCCATAGCTGGATCGTCCATGGGAGAGTATATCTATGGATTTCATCACTTCTTTGACGAAGTCAAACGGGTTTGGCACGGTTATGGTCGTAGTGGATAGATTCTCCAAGTGTGCTACTTTCATGCCTGCCACAGCTGGTTGTACTGCTAAGGAAGCTGCACAATAGTTTTTCAAAAATGTTGTGAAGTATTGGGGGCTGCCGAGGTTCATCATTAGCCATCGGGATCCTCGTTTCACAGGGAACTTTTGGAGTGAACTCTTTGAAATTCTTGGTTCAAAACTTCACTTCTCCACCAGTTTCCACCCCTAACCTGATGGCCAAACTGAACGCGTCAACGCCTTGTTGCAATGCTATCTTAGGCACTATGTCAGTGCACATCAGAAAGATTGGGCTAAGCTCCTAGACATGGCGCAATTTTCTTACAATTTGCAGAGGAGTGAATCTACAGGGCACACACCGTTCGAGTTAGCAATAGGCCAGCAACCCCAAACTCCGCACTTACTGCCAACCTGTTTTGAAGGGAAGAGTTTGGGCGCTTACAACCTTGCCAAGGGTTGGGAAGAACAACTCGACCTTGCTAAATCTTATTTGGGCAAGGCGGCAGGTTTTGGTAAATTTTAATCTGAGGCAGTTTAAGGCACATAGAGGCGTACATCACAATTTGGTGCGGAAATATGAGGGTCCTTTCAAAATTGTTGCCAAGGTGGGTAAAACTTCATACAAGTTGGAGTTACCTCCACACTTAAGGATCCACCCGGTCTTTCTTGCAAGCGTTCTTAAGACTTATCATGAGGATAAGGACGATCCCAGCCAAAACAAATCACAACGGGCCCCTATCACCATTACTGCCTCCCATGATCGAGAAATTGAAGCTATAATAGATTACCAAGCCAAACGGAAACGAGGACAGCAGGCCAGTGCCATGTTTCTCGTACATTGGAAGGGACAACATCCTGAACAAGCCACTTGGGAATAGTACGAAGACTTGTGGCATTTCAAAGACAAAATTCAGGAGTTCTTGCCGCAATGCATCGCGGTCGTCGAATCATGGGTGGGGGAGATTGTGACGTCCCTCCATCCATCCAGGCAGAACGCCACCAAACCTGGCAGCCAGCAGCAGGCGCAAGTGGGCAGACAGCCCAAGCCGGCTAGCAGGCCAATGGGCAGGCAGCAGTTGGAGAGGCAGCCGTTACAACAGTTTCAGCTGTTACGGCAGTTACAGCCGTTACAGCTGTCACAGCAGGTAGTGGGGCGGCAGTTACAAGCATTGAAGAGGCTTATTCAAGGCTTCTATGCGTTAGGGCAGACTAGGAGCATCTAGGAGTCCTTTTTGGAAGACTTAGAAGCATGTCTTGTAGGCATAGACTTAGGAACTTGTATAGTGTAGCATTTACTAACTCTTAGGCATTAGAGTAGTATAAATAGTAGTTCATTTTACTTGTAAAGAATCCTATAGTTACAGCAAGTAATAGAAGTTCCTTCTTCCAAAATTCTGTCTACTTCTTATTTTCTTAGTGATCCGAGTGAGAGGCTAACTTGAGTTTGCAAGAACGTGCAAGACTCGTGAGTACCGTCAAGTGCCGCACGGAGTATTGTCCGAATCAAAAAGTCCATGACACTACGCTCTGTATACATTAGCATGGGATAAAATTATAGGATTTTGGTCATATTACGTTGGCCTTCAGGATCGGAGTAATGATTAACAAGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGATGAACAACTGCGAAAGCATTTACCAAGAATATTTTCATTAACCAAGAATGAAATTAGGGGGCTCGAAGATGATCAGATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGATGGATGTTGCTTTTAGGACTCTGCCGCCACCTTATGAGAAATAAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGC</genome_strand>
        <mrna_strand>ATGGGCCGGCCGGTCCGCCCTAGGTGTGCACCGGTCGTCTCGTCCCTTCTGTC-GGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTTCGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586418" ref_strand="+" ref_description="SGN-E586418 [60473]">
      <seq>gatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101029" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100730" g_stop="100576" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586418" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100730" e_stop="100576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGC</genome_strand>
        <mrna_strand>GATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568103" ref_strand="+" ref_description="SGN-E568103 [12332]">
      <seq>cggcaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatactgggtgtgaattgcagaatcccgtggaaccatcgagtctttgaacgcaagttgcgcccggaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101034" stop="100280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100738" g_stop="100581" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="162" polyA_stop="175"/>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E568103" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100738" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACGAATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGT-GAACCATCGAGTCTTTGAACGCAAGTTGCGCCC-GAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTGGGTGTGAATTGCAGAATCCCGTGGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586436" ref_strand="+" ref_description="SGN-E586436 [60491]">
      <seq>cggcaacggatatctcnggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101034" stop="100280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100738" g_stop="100581" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586436" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100738" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACGAATATCTC-GGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGCAACGGATATCTCNGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587176" ref_strand="+" ref_description="SGN-E587176 [78290]">
      <seq>cggcaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtcgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101034" stop="100276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100738" g_stop="100581" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="164" polyA_stop="173"/>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E587176" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100738" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACGAATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586921" ref_strand="+" ref_description="SGN-E586921 [75757]">
      <seq>ggcaacggatatctcgggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101034" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100737" g_stop="100581" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="161" polyA_stop="173"/>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586921" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100737" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGAATATCTC-GGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>GGCAACGGATATCTCGGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586526" ref_strand="+" ref_description="SGN-E586526 [60583]">
      <seq>cggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101032" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100732" g_stop="100581" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586526" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100732" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586957" ref_strand="+" ref_description="SGN-E586957 [75794]">
      <seq>ctcggctctcgcatcgatgaatgaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcggagtctttgaacagcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtgaaacagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101025" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100725" g_stop="100581" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586957" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>145</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100725" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGCTCTCAAATCGATGAA-GAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATC-GAGTCTTTGAAC-GCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CTCGGCTCTCGCATCGATGAATGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGGAGTCTTTGAACAGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586791" ref_strand="+" ref_description="SGN-E586791 [75626]">
      <seq>cggctctcgcatcgatgaagaacgtagcgaaatgcgaatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101023" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100723" g_stop="100581" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586791" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100723" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCG-ATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGAATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586597" ref_strand="+" ref_description="SGN-E586597 [75430]">
      <seq>cggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcgcgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101023" stop="100279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100723" g_stop="100581" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E586597" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100723" e_stop="100581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</genome_strand>
        <mrna_strand>CGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612455" ref_strand="+" ref_description="SGN-E612455 [62218]">
      <seq>cggaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggccgagggcacgtctgcctgggcgtcacgcatcagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101034" stop="100283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100737" g_stop="100583" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E612455" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100737" e_stop="100583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGAATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATC</genome_strand>
        <mrna_strand>CGGAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337856" ref_strand="+" ref_description="SGN-E337856 [cTOE-14-A2]">
      <seq>aggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaactagctatgcggaggtatcccttcgcggccagcttcttagagggactacggccttttaggccgcggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagcttatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcatgcttctagtcccagtgcgccagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0007F24-NDki9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0007F24.3" temp_strand="-" temp_description="C02HBa0007F24.3  AC215351.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0007F24 sequenced_by:kribb upload_account_name:korea">
        <position start="101859" stop="100907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101559" g_stop="101224" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0007F24.3" gen_strand="-" ref_id="SGN-E337856" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0007F24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101559" e_stop="101224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCACACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTACGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGAAGCGATTTGTCATGTTAATTCTATTAACGAACGAGACCTCATCCTGCTAACTAGCTATGCGAAGGTATCCCTTCGCGGCCAGCTTCTTAGAGGGACTACAACCTTTTAGGCCGCGGATGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTATGGGCCGCACGTGCGCTACACTGAT-TATTCAACGAGCTTATAGCCTTGGCCGACAGGACCGTGTAATCTTTGAAATTTTATCGTGATAGGGAT</genome_strand>
        <mrna_strand>AGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGGCCAGCTTCTTAGAGGGACTACGGCCTTTTAGGCCGCGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGCTTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="32613" PGL_stop="32070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32613" e_stop="32070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="32613" e_stop="32070" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32613" stop="32302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32610" stop="32214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32609" stop="32092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32609" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32606" stop="32070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32604" stop="32094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32603" stop="32282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTAGTCATATGCTTGTATCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATACTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTTGACGCGGGCTCTGCCAGTTGCTGCGATGATTCATGATAACTCGATGGATCGCACGTCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATGAACTTTTGATTGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGTGAATTAGTGTTCGATTTTGGAGAGGGAGCCTGTGAAATGGCTACCACATCCAAGGAAGGCAGCAGGTGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCCATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGACAAG</gDNA_template>
            <first_frame> Q  V  V  I  C  L  Y  Q  R  L  S  H  A  C  V  S  M  N  K  F  R  L  *  N  C  E  W  L  I  K  S  V  I  L  C  L  M  V  S  T  T  R  I  T  V  V  I  L  E  L  I  H  A  T  N  P  D  F  W  K  G  C  I  Y  *  I  K  G  *  R  G  L  C  Q  L  L  R  *  F  M  I  T  R  W  I  A  R  P  S  C  R  R  R  I  I  Q  I  S  A  L  *  T  F  D  C  R  I  V  A  Y  H  G  G  D  G  *  R  *  I  S  V  R  F  W  R  G  S  L  *  N  G  Y  H  I  Q  G  R  Q  Q  V  R  K  L  P  N  P  D  T  G  R  *  *  Q  *  I  T  I  L  G  S  M  S  L  V  I  G  M  S  T  I  *  I  P  *  R  G  S  I  G  G  Q  </first_frame>
            <second_frame>  K  *  S  Y  A  C  I  K  D  *  A  M  H  V  *  V  *  T  N  S  D  C  E  T  A  N  G  S  L  N  Q  L  Y  F  V  *  W  Y  L  L  L  G  *  P  *  *  F  *  S  *  Y  M  Q  Q  T  P  T  S  G  R  D  A  F  I  R  *  K  V  D  A  G  S  A  S  C  C  D  D  S  *  *  L  D  G  S  H  V  H  R  A  G  D  A  S  F  K  F  L  P  Y  E  L  L  I  V  G  *  W  P  T  M  V  V  T  G  D  G  E  L  V  F  D  F  G  E  G  A  C  E  M  A  T  T  S  K  E  G  S  R  C  A  N  Y  P  I  L  T  R  G  G  S  D  N  K  *  Q  Y  W  A  P  *  V  W  *  L  E  *  V  Q  S  K  S  L  N  E  D  P  L  E  D  K </second_frame>
            <third_frame>   S  S  H  M  L  V  S  K  I  K  P  C  M  C  K  Y  E  Q  I  Q  T  V  K  L  R  M  A  H  *  I  S  Y  T  L  F  D  G  I  Y  Y  S  D  N  R  S  N  S  R  A  N  T  C  N  K  P  R  L  L  E  G  M  H  L  L  D  K  R  L  T  R  A  L  P  V  A  A  M  I  H  D  N  S  M  D  R  T  S  I  V  P  A  T  H  H  S  N  F  C  P  M  N  F  *  L  *  D  S  G  L  P  W  W  *  R  V  T  V  N  *  C  S  I  L  E  R  E  P  V  K  W  L  P  H  P  R  K  A  A  G  A  Q  I  T  Q  S  *  H  G  E  V  V  T  I  N  N  N  T  G  L  H  E  S  G  N  W  N  E  Y  N  L  N  P  L  T  R  I  H  W  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0007F24.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32524" stop="32303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISYTLFDGIYYSDNRSNSRANTCNKPRLLEGMHLLDKRLTRALPVAAMIHDNSMDRTSIVPATHHSNFCPMNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="48140" PGL_stop="47776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48140" e_stop="47776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="48140" e_stop="47776" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48140" stop="47776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGCCCGCAGCGATAGTGACGTGCAAATCGATCATCTGACTTGGGTATAGGGGCGAAAGACTAATAGAACCGTCTAATAGCTGGTTCCGTTCGAAGTTTCCATGAGTATAGCTGGAGCTCGCATGCGAGTTCTATCGGGTAAAGTCAATGATTAGAGGCCTCGGCGGCGCAACGCCCTCGACCTATTCTCAAACTTCAAATAGGTAGGACGGTGCGACTTCTTTGTTGAGCCGCGCCACATAATCAAGAGATCCAAGTGCGCCATTTTTGGTAAGCCGAACTGGCGATGCAGGATGAATCGGAAGCCGGGTTACGCTGCGAAACTGCGTGCTAACCTAGATCCCACAAAGGGTGTTGGTCAAT</gDNA_template>
            <first_frame> G  G  P  Q  R  *  *  R  A  N  R  S  S  D  L  G  I  G  A  K  D  *  *  N  R  L  I  A  G  S  V  R  S  F  H  E  Y  S  W  S  S  H  A  S  S  I  G  *  S  Q  *  L  E  A  S  A  A  Q  R  P  R  P  I  L  K  L  Q  I  G  R  T  V  R  L  L  C  *  A  A  P  H  N  Q  E  I  Q  V  R  H  F  W  *  A  E  L  A  M  Q  D  E  S  E  A  G  L  R  C  E  T  A  C  *  P  R  S  H  K  G  C  W  S   </first_frame>
            <second_frame>  E  A  R  S  D  S  D  V  Q  I  D  H  L  T  W  V  *  G  R  K  T  N  R  T  V  *  *  L  V  P  F  E  V  S  M  S  I  A  G  A  R  M  R  V  L  S  G  K  V  N  D  *  R  P  R  R  R  N  A  L  D  L  F  S  N  F  K  *  V  G  R  C  D  F  F  V  E  P  R  H  I  I  K  R  S  K  C  A  I  F  G  K  P  N  W  R  C  R  M  N  R  K  P  G  Y  A  A  K  L  R  A  N  L  D  P  T  K  G  V  G  Q  </second_frame>
            <third_frame>   R  P  A  A  I  V  T  C  K  S  I  I  *  L  G  Y  R  G  E  R  L  I  E  P  S  N  S  W  F  R  S  K  F  P  *  V  *  L  E  L  A  C  E  F  Y  R  V  K  S  M  I  R  G  L  G  G  A  T  P  S  T  Y  S  Q  T  S  N  R  *  D  G  A  T  S  L  L  S  R  A  T  *  S  R  D  P  S  A  P  F  L  V  S  R  T  G  D  A  G  *  I  G  S  R  V  T  L  R  N  C  V  L  T  *  I  P  Q  R  V  L  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0007F24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="73189" PGL_stop="74425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73189" e_stop="73351"/>
            <exon e_start="73913" e_stop="74425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="73189" e_stop="73351" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73352" i_stop="73912" i_length="561"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="73913" e_stop="74425" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73189" stop="73351"/>
              <exon start="73913" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73247" stop="73351"/>
              <exon start="73913" stop="74425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337395" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCTTTGCAGTTGTTCATCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCTGACTATCCTTGTTAATCATTACTCCTATCCTGAAGGCCAACGTAATATGATCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGC : GTAGGATTTCATTGAGCACTCTAATTCTTCAAAGTAACAGCGTCGGAGGCATGACCCGACCACTAAACGCCATGAGCGCATCACCCGACAGAAGGGACGAGACGACCGGTGCACATCTAGGGCGGACCGGCCGGCCCATCCCAAAGTCCAACTACGAGCTTTTTAATTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGACTGCTTGCACCAGACTTGCCCTCCAATGGATCCTTGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATGGAGCCTAGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGGTTGGGTAATTTGCACACCTACTGCCTTCCTTGGATGTGGTAGCCATTTCACAGGCTCCCTCTTCGGAATCGAACCCTAATTCTCCGTCACACTTCACCACCATGGTAGGCCACTATCCTATCATCAAAAGTTCATAGGGCAGAAATTTGAATGATGCGTCGCCGGCATGATGGCCGTG</gDNA_template>
            <first_frame> N  A  L  Q  L  F  I  F  H  K  S  K  N  F  T  S  D  Y  E  I  R  M  P  L  T  I  L  V  N  H  Y  S  Y  P  E  G  Q  R  N  M  I  E  I  L  *  C  Y  P  M  L  M  Y  T  E   : R  R  I  S  L  S  T  L  I  L  Q  S  N  S  V  G  G  M  T  R  P  L  N  A  M  S  A  S  P  D  R  R  D  E  T  T  G  A  H  L  G  R  T  G  R  P  I  P  K  S  N  Y  E  L  F  N  C  N  N  L  N  I  R  Y  W  S  W  N  Y  R  D  C  L  H  Q  T  C  P  P  M  D  P  C  *  G  I  *  I  V  L  I  P  I  T  R  L  M  E  P  S  I  V  I  Y  C  H  Y  L  P  V  S  G  L  G  N  L  H  T  Y  C  L  P  W  M  W  *  P  F  H  R  L  P  L  R  N  R  T  L  I  L  R  H  T  S  P  P  W  *  A  T  I  L  S  S  K  V  H  R  A  E  I  *  M  M  R  R  R  H  D  G  R  </first_frame>
            <second_frame>  M  L  C  S  C  S  S  F  I  N  P  R  I  S  P  L  T  M  K  Y  E  C  P  *  L  S  L  L  I  I  T  P  I  L  K  A  N  V  I  *  S  K  S  Y  N  V  I  P  C  *  C  I  Q  S  :  V  G  F  H  *  A  L  *  F  F  K  V  T  A  S  E  A  *  P  D  H  *  T  P  *  A  H  H  P  T  E  G  T  R  R  P  V  H  I  *  G  G  P  A  G  P  S  Q  S  P  T  T  S  F  L  I  A  T  T  *  I  Y  A  I  G  A  G  I  T  A  T  A  C  T  R  L  A  L  Q  W  I  L  V  K  G  F  R  L  Y  S  F  Q  L  P  D  S  W  S  L  V  L  L  F  I  V  T  T  S  P  C  Q  G  W  V  I  C  T  P  T  A  F  L  G  C  G  S  H  F  T  G  S  L  F  G  I  E  P  *  F  S  V  T  L  H  H  H  G  R  P  L  S  Y  H  Q  K  F  I  G  Q  K  F  E  *  C  V  A  G  M  M  A  V </second_frame>
            <third_frame>   C  F  A  V  V  H  L  S  *  I  Q  E  F  H  L  *  L  *  N  T  N  A  P  D  Y  P  C  *  S  L  L  L  S  *  R  P  T  *  Y  D  R  N  P  I  M  L  S  H  A  N  V  Y  R  A :   *  D  F  I  E  H  S  N  S  S  K  *  Q  R  R  R  H  D  P  T  T  K  R  H  E  R  I  T  R  Q  K  G  R  D  D  R  C  T  S  R  A  D  R  P  A  H  P  K  V  Q  L  R  A  F  *  L  Q  Q  L  K  Y  T  L  L  E  L  E  L  P  R  L  L  A  P  D  L  P  S  N  G  S  L  L  R  D  L  D  C  T  H  S  N  Y  Q  T  H  G  A  *  Y  C  Y  L  L  S  L  P  P  R  V  R  V  G  *  F  A  H  L  L  P  S  L  D  V  V  A  I  S  Q  A  P  S  S  E  S  N  P  N  S  P  S  H  F  T  T  M  V  G  H  Y  P  I  I  K  S  S  *  G  R  N  L  N  D  A  S  P  A  *  W  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0007F24.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73324" stop="73351"/>
                    <exon start="73913" stop="74163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYPMLMYTERRISLSTLILQSNSVGGMTRPLNAMSASPDRRDETTGAHLGRTGRPIPKSNYELFNCNNLNIRYWSWNYRDCLHQTCPPMDPC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0007F24.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74093" stop="74326"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYAIGAGITATACTRLALQWILVKGFRLYSFQLPDSWSLVLLFIVTTSPCQGWVICTPTAFLGCGSHFTGSLFGIEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="96054" PGL_stop="89649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96054" e_stop="95920"/>
            <exon e_start="89993" e_stop="89649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.874"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="96054" e_stop="95920" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95919" i_stop="89994" i_length="5926"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="89993" e_stop="89649" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96054" stop="95920"/>
              <exon start="89993" stop="89649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGCCGACCGGTCCACCCTAGATGTGCACCGGTCATCTCGTCCCTTCTGTCGGGCGATGCGCTCATGGCATTTAGTGGCTGGGTCATGCCTCCGACGCTGTTACTTTGAAGAATTGGAGTGCTCAATGAAAGC : CTACGCTCTGTATACATTAGCATGGGATAAAATTATAGGATTTTGGTCATATTACGTTGGCCTTCAGGATCGGAGTAATGATTAACAAGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGATGAACAACTGCGAAAGCATTTACCAAGAATATTTTCATTAACCAAGAATGAAATTAGGGGGCTCGAAGATGATCAGATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGATGGATGTTGCTTTTAGGACTCTGCCGCCACCTTATGAGAAATAAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGC</gDNA_template>
            <first_frame> M  G  R  P  V  H  P  R  C  A  P  V  I  S  S  L  L  S  G  D  A  L  M  A  F  S  G  W  V  M  P  P  T  L  L  L  *  R  I  G  V  L  N  E  S  :  L  R  S  V  Y  I  S  M  G  *  N  Y  R  I  L  V  I  L  R  W  P  S  G  S  E  *  *  L  T  R  T  V  R  G  I  R  I  S  *  S  E  V  K  F  L  D  L  *  K  M  N  N  C  E  S  I  Y  Q  E  Y  F  H  *  P  R  M  K  L  G  G  S  K  M  I  R  Y  H  P  S  L  N  H  K  R  C  R  P  G  I  D  G  C  C  F  *  D  S  A  A  T  L  *  E  I  K  V  F  G  F  R  G  E  Y  G  R </first_frame>
            <second_frame>  W  A  D  R  S  T  L  D  V  H  R  S  S  R  P  F  C  R  A  M  R  S  W  H  L  V  A  G  S  C  L  R  R  C  Y  F  E  E  L  E  C  S  M  K  A :   Y  A  L  Y  T  L  A  W  D  K  I  I  G  F  W  S  Y  Y  V  G  L  Q  D  R  S  N  D  *  Q  G  Q  S  G  A  F  V  F  H  S  Q  R  *  N  S  W  I  Y  E  R  *  T  T  A  K  A  F  T  K  N  I  F  I  N  Q  E  *  N  *  G  A  R  R  *  S  D  T  I  L  V  S  T  I  N  D  A  D  Q  G  S  M  D  V  A  F  R  T  L  P  P  P  Y  E  K  *  K  F  L  G  S  G  G  S  M  V   </second_frame>
            <third_frame>   G  P  T  G  P  P  *  M  C  T  G  H  L  V  P  S  V  G  R  C  A  H  G  I  *  W  L  G  H  A  S  D  A  V  T  L  K  N  W  S  A  Q  *  K   : P  T  L  C  I  H  *  H  G  I  K  L  *  D  F  G  H  I  T  L  A  F  R  I  G  V  M  I  N  K  D  S  Q  G  H  S  Y  F  I  V  R  G  E  I  L  G  F  M  K  D  E  Q  L  R  K  H  L  P  R  I  F  S  L  T  K  N  E  I  R  G  L  E  D  D  Q  I  P  S  *  S  Q  P  *  T  M  P  T  R  D  R  W  M  L  L  L  G  L  C  R  H  L  M  R  N  K  S  F  W  V  P  G  G  V  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0007F24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96053" stop="95920"/>
                    <exon start="89993" stop="89909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WADRSTLDVHRSSRPFCRAMRSWHLVAGSCLRRCYFEELECSMKAYALYTLAWDKIIGFWSYYVGLQDRSND*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0007F24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89955" stop="89758"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGHITLAFRIGVMINKDSQGHSYFIVRGEILGFMKDEQLRKHLPRIFSLTKNEIRGLEDDQIPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="100738" PGL_stop="100576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100738" e_stop="100576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="100738" e_stop="100576" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100737" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100737" stop="100583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100732" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100730" stop="100576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100725" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100723" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100723" stop="100581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAACGAATATCTCGGCTCTCAAATCGATGAAGAAGGTAGCGAAATGCGATGCTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGC</gDNA_template>
            <first_frame> *  K  R  I  S  R  L  S  N  R  *  R  R  *  R  N  A  M  L  G  V  N  C  R  I  P  *  T  I  E  S  L  N  A  S  C  A  R  S  H  L  A  E  G  T  S  A  W  A  S  R  I  A  L  </first_frame>
            <second_frame>  E  N  E  Y  L  G  S  Q  I  D  E  E  G  S  E  M  R  C  L  V  *  I  A  E  S  R  E  P  S  S  L  *  T  Q  V  A  P  E  A  I  W  P  R  A  R  L  P  G  R  H  A  S  R  C </second_frame>
            <third_frame>   K  T  N  I  S  A  L  K  S  M  K  K  V  A  K  C  D  A  W  C  E  L  Q  N  P  V  N  H  R  V  F  E  R  K  L  R  P  K  P  F  G  R  G  H  V  C  L  G  V  T  H  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0007F24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="101559" PGL_stop="101224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101559" e_stop="101224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="101559" e_stop="101224" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101559" stop="101224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTCCACACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTACGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGAAGCGATTTGTCATGTTAATTCTATTAACGAACGAGACCTCATCCTGCTAACTAGCTATGCGAAGGTATCCCTTCGCGGCCAGCTTCTTAGAGGGACTACAACCTTTTAGGCCGCGGATGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTATGGGCCGCACGTGCGCTACACTGATTATTCAACGAGCTTATAGCCTTGGCCGACAGGACCGTGTAATCTTTGAAATTTTATCGTGATAGGGAT</gDNA_template>
            <first_frame> R  S  T  H  S  K  D  *  Q  T  E  S  S  F  L  I  L  R  V  V  V  H  G  R  S  *  L  V  K  R  F  V  M  L  I  L  L  T  N  E  T  S  S  C  *  L  A  M  R  R  Y  P  F  A  A  S  F  L  E  G  L  Q  P  F  R  P  R  M  F  E  A  I  T  G  L  *  C  P  *  M  L  W  A  A  R  A  L  H  *  L  F  N  E  L  I  A  L  A  D  R  T  V  *  S  L  K  F  Y  R  D  R  D </first_frame>
            <second_frame>  G  P  H  I  V  R  I  D  R  L  R  A  L  S  *  F  Y  G  W  W  C  M  A  V  L  S  W  *  S  D  L  S  C  *  F  Y  *  R  T  R  P  H  P  A  N  *  L  C  E  G  I  P  S  R  P  A  S  *  R  D  Y  N  L  L  G  R  G  C  L  R  Q  *  Q  V  C  D  A  L  R  C  Y  G  P  H  V  R  Y  T  D  Y  S  T  S  L  *  P  W  P  T  G  P  C  N  L  *  N  F  I  V  I  G   </second_frame>
            <third_frame>   V  H  T  *  *  G  L  T  D  *  E  L  F  L  D  S  T  G  G  G  A  W  P  F  L  V  G  E  A  I  C  H  V  N  S  I  N  E  R  D  L  I  L  L  T  S  Y  A  K  V  S  L  R  G  Q  L  L  R  G  T  T  T  F  *  A  A  D  V  *  G  N  N  R  S  V  M  P  L  D  V  M  G  R  T  C  A  T  L  I  I  Q  R  A  Y  S  L  G  R  Q  D  R  V  I  F  E  I  L  S  *  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0007F24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 586784 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 26672 bytes was the average size of a spliced alignment
$ 11536 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1922 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:38
-->
