<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:06:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG373-R" ref_strand="+" ref_description="TG373-R">
      <seq>ggagacaagcttgcatgcctgcagccaagttacatcaagctcgacatccacggcagcagagacaaaagacttcatctctttgatggaagaagaaccaatatcactgttttcgagcctctttacaacattcacaaaccagatcaagaagggaagctatggaagccaatgatgtatagtgacagttgactgcaatgtcatcatactcggcaaaaatggcagtaaatgtgggagcactggttacttttacttttggagttaaattatgctgcatggtcctacataaaatgttgttcagctggaatcacattctttatggggtctaaatgtgatataaataacttccactgttggaggagtctgatgatcagttgcttttccctgccaagttttcgagcatagaaaggtgttatgaaataaatactaatattaagtttttgagatttctatcacttcgccatgcatgctttctgggttcactttctcatctaaacttccgtagcagtttgccattcacaatggcacactgaacactagagaccagaatggttgtcgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="59612" stop="60758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59927" g_stop="60458" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="556" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="TG373-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="TG373-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59927" e_stop="60458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTACATCAAGCTTGACATCCACGGCAGCAGAGACAAAAGACTTCATCTCTTTGATGGAAGAAGAACCAATATCACTGTTTTCGAGCCTCTTTACAACATTCACAAACCAGATCAAGAAGGGAAGCTATGGAAGCCAATGATGTATAGTGACAGTTGACTGCAATGTCATCATACTCGGCAAAAATGGCAGTAAATGTGGGAGCACTGGTTACTTTTACTTTTGGAGTTAAATTATGCTGCATGGTCCTACATAAAATGTTGTTCAGCTGGAATCACATTCTTTATGGGGTCTAAATGTGATATAAATAACTTCCACTGTTGGAGGAGTCTGATGATCAGTTGCTTTTCCCTGCCAAGTTTTCGAGCATAGAAAGGTGTTATGAAATAAATACTAATATTAAGTTTTTGAGATTTCTATCACTTCGCCATGCATGCTTTCTGGGTTCACTTTCTCATCTAAACTTCCGTAGCAGTTTGCCATTCACAATGGCACACTGAACACTAGAGACCAGAATGGTTGTCGTGCA</genome_strand>
        <mrna_strand>CCAAGTTACATCAAGCTCGACATCCACGGCAGCAGAGACAAAAGACTTCATCTCTTTGATGGAAGAAGAACCAATATCACTGTTTTCGAGCCTCTTTACAACATTCACAAACCAGATCAAGAAGGGAAGCTATGGAAGCCAATGATGTATAGTGACAGTTGACTGCAATGTCATCATACTCGGCAAAAATGGCAGTAAATGTGGGAGCACTGGTTACTTTTACTTTTGGAGTTAAATTATGCTGCATGGTCCTACATAAAATGTTGTTCAGCTGGAATCACATTCTTTATGGGGTCTAAATGTGATATAAATAACTTCCACTGTTGGAGGAGTCTGATGATCAGTTGCTTTTCCCTGCCAAGTTTTCGAGCATAGAAAGGTGTTATGAAATAAATACTAATATTAAGTTTTTGAGATTTCTATCACTTCGCCATGCATGCTTTCTGGGTTCACTTTCTCATCTAAACTTCCGTAGCAGTTTGCCATTCACAATGGCACACTGAACACTAGAGACCAGAATGGTTGTCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG373-F" ref_strand="+" ref_description="TG373-F">
      <seq>ctgagagatcctcacacaccaaagaaagcaattcccaaaatccagtaaaaaacaacgtaaaaggaagaactcgccatcacaagaagaggtaaacttatgttgatcattaattcaatctggcttttagttattaatattagccaacgtacagtaagtgcttactaaagtgtgaatgtaggttttttggaatattatgtcaatccaagtgaagtgttttttctatcccttatttctcctcaagcttctttgaaactcaaactgattctaaatggaagttctcctaggcattaatttatgataattggatctttttatatcctcttaaattagtcctttttaccctgcacgacaaccattctggtctctagtgttcagtgtgccattgtgaatggcaaactgctacggaagtttacatgagaaagtgaacccataaagcatgcatggcgaagtgatagaaatctcaaaaacttagtattagtatttatttcataacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="61099" stop="60003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60799" g_stop="60303" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="TG373-F" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="TG373-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60799" e_stop="60303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAGATCCTCAAACACCAAAGAAAGCAATTCCCAAAATCCAGTAAAAAACAACGTAAAAGGAAGAACTCGCCATCACAAGAAGAGGTAAACTTATGTT-ATCATTAATTCGATCTGGCTTTTAGTTATTAATATTAGCCAACGTACAGTAAGTGCTTACTAAAGTGTGAATGTAGTTTTTTTGGAATATTATGTCAATCCAAGTGAAGTGTTTTTTCTATCCCTTATTTCTCCTCAACCTTCTTTGAAACTCAAACTGATTCTAAATGTAAGTTCTCCTAGGCATTAATTTATGATAATTGGTTCTTTTTATATCCTCTTAAATTAGTCCTTTTTACCCTGCACGACAACCATTCTGGTCTCTAGTGTTCAGTGTGCCATTGTGAATGGCAAACTGCTACGGAAGTTTAGATGAGAAAGTGAACCCAGAAAGCATGCATGGCGAAGTGATAGAAATCTCAAAAACTTAATATTAGTATTTATTTCATAACACCTT</genome_strand>
        <mrna_strand>CTGAGAGATCCTCACACACCAAAGAAAGCAATTCCCAAAATCCAGTAAAAAACAACGTAAAAGGAAGAACTCGCCATCACAAGAAGAGGTAAACTTATGTTGATCATTAATTCAATCTGGCTTTTAGTTATTAATATTAGCCAACGTACAGTAAGTGCTTACTAAAGTGTGAATGTAGGTTTTTTGGAATATTATGTCAATCCAAGTGAAGTGTTTTTTCTATCCCTTATTTCTCCTCAAGCTTCTTTGAAACTCAAACTGATTCTAAATGGAAGTTCTCCTAGGCATTAATTTATGATAATTGGATCTTTTTATATCCTCTTAAATTAGTCCTTTTTACCCTGCACGACAACCATTCTGGTCTCTAGTGTTCAGTGTGCCATTGTGAATGGCAAACTGCTACGGAAGTTTACATGAGAAAGTGAACCCATAAAGCATGCATGGCGAAGTGATAGAAATCTCAAAAACTTAGTATTAGTATTTATTTCATAACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g14660" ref_strand="+" ref_description="C2_At5g14660">
      <seq>aaaaggagtaatatttgcatctttggaggtgaaattgcccgttttgttgtgaagcaaatggcaatggctgccgcaatttgggcatcttcttcttcgttcgctcgctctctccggcctctcctctgttggaactcgtctctctcccctatcaacttcactcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattggctgtttacgctcaagccaggcgagttttatcttccaaaaccaaaggagatgaaatagctactcctgctgatttgagcttcgaggtgccattgaaaattgtagagtatccagacccgattctaagagcgaagaataagaggattgacaaatttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagctggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatatatggtgatgttgagagaccagactcagttaaggttgacgcactggacattaatggtgcaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacaggcagttcttttctttgacaaaatgactgacgaagttttggacaccatccgtgaacaatttagtggccgctagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112033" stop="108590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111733" g_stop="111445" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="428" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="621" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="732" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="796" r_length="64" r_score="0.889"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108791" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="808" r_length="12" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="C2_At5g14660" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g14660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111733" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAA-AAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGG-CGCTAGAAAA</genome_strand>
        <mrna_strand>AAAAGGAGTAATATTTGCATCTTTGGAGGTGAAATTGCCCGTTTTGTTGTGAAGCAAATGGCAATGGCTGCCGCAATTTGGGCATCTTCTTCTTCGTTCGCTCGCTCTCTCCGGCCTCTCCTCTGTTGGAACTCGTCTCTCTCCCCTATCAACTTCACTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTGGCTGTTTACGCTCAAGCCAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCTACTC..............................................................................................CTGCTGATTTGAGCTTCGAGGTGCCATTGAAAATTGTAGAGTATCCAGACCCGATTCTAAGAGCGAAGAATAAGAGGATTGACAAATTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCTGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATATATGGTGATGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGACTCAGTTAAGGTTGACGCACTGGACATTAATGGTGCAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCTTTTCTTTGACAAAATGACTGACGAAGTTTTGGACACCATCCGTGAACAATTTAGTG.........................................................................................GCCGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="59927" PGL_stop="60458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59927" e_stop="60458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="59927" e_stop="60458" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59927" stop="60458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG373-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTTACATCAAGCTTGACATCCACGGCAGCAGAGACAAAAGACTTCATCTCTTTGATGGAAGAAGAACCAATATCACTGTTTTCGAGCCTCTTTACAACATTCACAAACCAGATCAAGAAGGGAAGCTATGGAAGCCAATGATGTATAGTGACAGTTGACTGCAATGTCATCATACTCGGCAAAAATGGCAGTAAATGTGGGAGCACTGGTTACTTTTACTTTTGGAGTTAAATTATGCTGCATGGTCCTACATAAAATGTTGTTCAGCTGGAATCACATTCTTTATGGGGTCTAAATGTGATATAAATAACTTCCACTGTTGGAGGAGTCTGATGATCAGTTGCTTTTCCCTGCCAAGTTTTCGAGCATAGAAAGGTGTTATGAAATAAATACTAATATTAAGTTTTTGAGATTTCTATCACTTCGCCATGCATGCTTTCTGGGTTCACTTTCTCATCTAAACTTCCGTAGCAGTTTGCCATTCACAATGGCACACTGAACACTAGAGACCAGAATGGTTGTCGTGCA</gDNA_template>
            <first_frame> P  S  Y  I  K  L  D  I  H  G  S  R  D  K  R  L  H  L  F  D  G  R  R  T  N  I  T  V  F  E  P  L  Y  N  I  H  K  P  D  Q  E  G  K  L  W  K  P  M  M  Y  S  D  S  *  L  Q  C  H  H  T  R  Q  K  W  Q  *  M  W  E  H  W  L  L  L  L  L  E  L  N  Y  A  A  W  S  Y  I  K  C  C  S  A  G  I  T  F  F  M  G  S  K  C  D  I  N  N  F  H  C  W  R  S  L  M  I  S  C  F  S  L  P  S  F  R  A  *  K  G  V  M  K  *  I  L  I  L  S  F  *  D  F  Y  H  F  A  M  H  A  F  W  V  H  F  L  I  *  T  S  V  A  V  C  H  S  Q  W  H  T  E  H  *  R  P  E  W  L  S  C  </first_frame>
            <second_frame>  Q  V  T  S  S  L  T  S  T  A  A  E  T  K  D  F  I  S  L  M  E  E  E  P  I  S  L  F  S  S  L  F  T  T  F  T  N  Q  I  K  K  G  S  Y  G  S  Q  *  C  I  V  T  V  D  C  N  V  I  I  L  G  K  N  G  S  K  C  G  S  T  G  Y  F  Y  F  W  S  *  I  M  L  H  G  P  T  *  N  V  V  Q  L  E  S  H  S  L  W  G  L  N  V  I  *  I  T  S  T  V  G  G  V  *  *  S  V  A  F  P  C  Q  V  F  E  H  R  K  V  L  *  N  K  Y  *  Y  *  V  F  E  I  S  I  T  S  P  C  M  L  S  G  F  T  F  S  S  K  L  P  *  Q  F  A  I  H  N  G  T  L  N  T  R  D  Q  N  G  C  R  A </second_frame>
            <third_frame>   K  L  H  Q  A  *  H  P  R  Q  Q  R  Q  K  T  S  S  L  *  W  K  K  N  Q  Y  H  C  F  R  A  S  L  Q  H  S  Q  T  R  S  R  R  E  A  M  E  A  N  D  V  *  *  Q  L  T  A  M  S  S  Y  S  A  K  M  A  V  N  V  G  A  L  V  T  F  T  F  G  V  K  L  C  C  M  V  L  H  K  M  L  F  S  W  N  H  I  L  Y  G  V  *  M  *  Y  K  *  L  P  L  L  E  E  S  D  D  Q  L  L  F  P  A  K  F  S  S  I  E  R  C  Y  E  I  N  T  N  I  K  F  L  R  F  L  S  L  R  H  A  C  F  L  G  S  L  S  H  L  N  F  R  S  S  L  P  F  T  M  A  H  *  T  L  E  T  R  M  V  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="60799" PGL_stop="60303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60799" e_stop="60303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="60799" e_stop="60303" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60799" stop="60303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG373-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGAGATCCTCAAACACCAAAGAAAGCAATTCCCAAAATCCAGTAAAAAACAACGTAAAAGGAAGAACTCGCCATCACAAGAAGAGGTAAACTTATGTTATCATTAATTCGATCTGGCTTTTAGTTATTAATATTAGCCAACGTACAGTAAGTGCTTACTAAAGTGTGAATGTAGTTTTTTTGGAATATTATGTCAATCCAAGTGAAGTGTTTTTTCTATCCCTTATTTCTCCTCAACCTTCTTTGAAACTCAAACTGATTCTAAATGTAAGTTCTCCTAGGCATTAATTTATGATAATTGGTTCTTTTTATATCCTCTTAAATTAGTCCTTTTTACCCTGCACGACAACCATTCTGGTCTCTAGTGTTCAGTGTGCCATTGTGAATGGCAAACTGCTACGGAAGTTTAGATGAGAAAGTGAACCCAGAAAGCATGCATGGCGAAGTGATAGAAATCTCAAAAACTTAATATTAGTATTTATTTCATAACACCTT</gDNA_template>
            <first_frame> L  R  D  P  Q  T  P  K  K  A  I  P  K  I  Q  *  K  T  T  *  K  E  E  L  A  I  T  R  R  G  K  L  M  L  S  L  I  R  S  G  F  *  L  L  I  L  A  N  V  Q  *  V  L  T  K  V  *  M  *  F  F  W  N  I  M  S  I  Q  V  K  C  F  F  Y  P  L  F  L  L  N  L  L  *  N  S  N  *  F  *  M  *  V  L  L  G  I  N  L  *  *  L  V  L  F  I  S  S  *  I  S  P  F  Y  P  A  R  Q  P  F  W  S  L  V  F  S  V  P  L  *  M  A  N  C  Y  G  S  L  D  E  K  V  N  P  E  S  M  H  G  E  V  I  E  I  S  K  T  *  Y  *  Y  L  F  H  N  T   </first_frame>
            <second_frame>  *  E  I  L  K  H  Q  R  K  Q  F  P  K  S  S  K  K  Q  R  K  R  K  N  S  P  S  Q  E  E  V  N  L  C  Y  H  *  F  D  L  A  F  S  Y  *  Y  *  P  T  Y  S  K  C  L  L  K  C  E  C  S  F  F  G  I  L  C  Q  S  K  *  S  V  F  S  I  P  Y  F  S  S  T  F  F  E  T  Q  T  D  S  K  C  K  F  S  *  A  L  I  Y  D  N  W  F  F  L  Y  P  L  K  L  V  L  F  T  L  H  D  N  H  S  G  L  *  C  S  V  C  H  C  E  W  Q  T  A  T  E  V  *  M  R  K  *  T  Q  K  A  C  M  A  K  *  *  K  S  Q  K  L  N  I  S  I  Y  F  I  T  P  </second_frame>
            <third_frame>   E  R  S  S  N  T  K  E  S  N  S  Q  N  P  V  K  N  N  V  K  G  R  T  R  H  H  K  K  R  *  T  Y  V  I  I  N  S  I  W  L  L  V  I  N  I  S  Q  R  T  V  S  A  Y  *  S  V  N  V  V  F  L  E  Y  Y  V  N  P  S  E  V  F  F  L  S  L  I  S  P  Q  P  S  L  K  L  K  L  I  L  N  V  S  S  P  R  H  *  F  M  I  I  G  S  F  Y  I  L  L  N  *  S  F  L  P  C  T  T  T  I  L  V  S  S  V  Q  C  A  I  V  N  G  K  L  L  R  K  F  R  *  E  S  E  P  R  K  H  A  W  R  S  D  R  N  L  K  N  L  I  L  V  F  I  S  *  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="111733" PGL_stop="108791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111733" e_stop="111445"/>
            <exon e_start="111350" e_stop="111212"/>
            <exon e_start="110721" e_stop="110529"/>
            <exon e_start="109492" e_stop="109382"/>
            <exon e_start="108953" e_stop="108891"/>
            <exon e_start="108801" e_stop="108791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="0.927"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.957"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.977" acc_prob="0.448" e_score="0.973"/>
          <exon-intron don_prob="0.537" acc_prob="0.999" e_score="0.889"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="111733" e_stop="111445" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="111350" e_stop="111212" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="110721" e_stop="110529" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="109492" e_stop="109382" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.448">
            <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="0.889">
            <gDNA_exon_boundary e_start="108953" e_stop="108891" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.537" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="0.818">
            <gDNA_exon_boundary e_start="108801" e_stop="108791" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111733" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g14660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC : CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA : AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG : AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG : GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG : GCGCTAGAAAA</gDNA_template>
            <first_frame> K  I  S  N  I  C  I  C  R  G  E  I  V  R  F  V  V  W  Q  M  A  M  A  A  A  S  W  A  S  S  S  S  F  T  R  F  L  R  P  L  L  S  R  N  S  S  P  S  P  I  S  Y  S  L  H  R  Y  K  S  A  N  C  L  F  F  S  A  S  S  N  K  P  P  K  L  A  V  Y  A  Q  A  R  R  V  L  S  S  K  T  K  G  D  E  I  A  T   : P  A  D  L  S  F  V  V  P  L  K  I  V  E  Y  P  D  P  I  L  R  A  K  N  K  R  I  D  N  F  D  A  N  L  K  K  L  V  D  E  M  F  D  I  M  Y  K :   T  D  G  I  G  L  S  A  P  Q  V  G  M  N  V  Q  L  M  V  F  N  A  A  G  E  R  G  E  G  E  E  I  V  L  V  N  P  R  V  S  R  Y  S  R  R  I  I  P  Y  E  E  G  C  L  S  F  P  M  I  H  G  D  V  K  :  R  P  E  S  V  K  V  D  A  Q  D  I  N  G  T  R  F  E  I  S  L  S  A  L  P  A  R  V  F  Q  H  E  F  D  H  L  Q  :  G  V  L  F  F  D  K  M  T  D  E  V  L  D  T  I  R  E  K  L  V  :  A  L  E   </first_frame>
            <second_frame>  K  L  V  I  F  A  S  V  E  V  K  L  S  V  L  L  C  G  K  W  Q  W  L  P  Q  V  G  H  L  L  L  R  S  L  A  F  S  G  L  S  S  V  G  T  R  L  P  P  L  S  V  T  V  F  I  D  I  N  Q  L  T  V  Y  F  S  P  Q  A  V  I  N  L  Q  N  *  L  F  M  L  K  L  G  E  F  Y  L  P  K  P  K  E  M  K  *  Q  L  :  L  L  T  *  A  S  W  F  H  *  K  L  W  S  I  Q  T  R  F  *  E  R  R  I  R  G  L  T  I  L  T  L  I  *  R  S  *  L  M  K  C  S  I  L  C  T   : K  L  M  A  L  G  C  L  H  H  K  L  E  *  M  F  N  *  W  Y  L  M  Q  P  V  N  V  E  R  G  R  R  L  F  S  S  I  H  V  S  V  D  I  L  G  G  L  Y  L  M  K  K  V  A  Y  L  F  Q  *  Y  M  V  M  L  R :   D  Q  S  Q  L  R  L  T  H  R  T  L  M  V  Q  G  L  R  *  A  C  L  L  F  Q  H  E  S  S  N  M  N  L  I  T  Y  R :   E  F  F  S  L  T  K  *  L  T  K  S  W  T  P  F  V  K  N  *  W :   R  *  K  </second_frame>
            <third_frame>   N  *  *  Y  L  H  L  *  R  *  N  C  P  F  C  C  V  A  N  G  N  G  C  R  K  L  G  I  F  F  F  V  H  S  L  S  P  A  S  P  Q  S  E  L  V  S  L  P  Y  Q  L  Q  S  S  S  I  *  I  S  *  L  F  I  F  L  R  K  Q  *  *  T  S  K  I  S  C  L  C  S  S  *  A  S  F  I  F  Q  N  Q  R  R  *  N  S  N  S :   C  *  L  E  L  R  G  S  I  E  N  C  G  V  S  R  P  D  F  K  S  E  E  *  E  D  *  Q  F  *  R  *  F  E  E  V  S  *  *  N  V  R  Y  Y  V  Q  :  N  *  W  H  W  A  V  C  T  T  S  W  N  E  C  S  T  N  G  I  *  C  S  R  *  T  W  R  G  G  G  D  C  S  R  Q  S  T  C  Q  *  I  F  *  E  D  Y  T  L  *  R  R  L  L  I  F  S  N  D  T  W  *  C  *   : E  T  R  V  S  *  G  *  R  T  G  H  *  W  Y  K  V  *  D  K  L  V  C  S  S  S  T  S  L  P  T  *  I  *  S  P  T   : G  S  S  F  L  *  Q  N  D  *  R  S  P  G  H  H  S  *  K  I  S   : G  A  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111733" stop="111445"/>
                    <exon start="111350" stop="111212"/>
                    <exon start="110721" stop="110529"/>
                    <exon start="109492" stop="109382"/>
                    <exon start="108953" stop="108891"/>
                    <exon start="108801" stop="108793"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISNICICRGEIVRFVVWQMAMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 139 chains have been computed
$ 
$ memory statistics:
$ 5848 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1949 bytes was the average size of a spliced alignment
$ 8040 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 139 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:15
-->
