<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:01:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723821" ref_strand="+" ref_description="SGN-E723821 [FC22AC08]">
      <seq>cggccaaatcggccgaattgggaagaataaccgaaccgttgttggaagaaggtgaatggattcgttgtctttacaatctcatcttagtttgaggaggtaatttatagttcttgtgttctcctgattcttcatgttgtaattatcatagaagttttattcttgattagtattagtagttcataaggcatatttaactgatagttcgtatgattaaattgatgttttctgtgttgttgaaatgatgaaagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatggctacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtaaaaaagagtccaatctcatgctaattttgatgataactgtcagatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcaaaaccatctatcaaagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggtatctttctttttatgtagtctgaattctcaagttgtgatagctgatgtagaatttgccgatgatgtatagtgctaggttttgacctgatatcagagttaaagccaaggaccttggtgaaaaggctttgatctttcacttttcaggatattccttcattaacagctgaagctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3201" stop="5200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3507" g_stop="3951" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="457" r_length="445" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3952" i_stop="4027" i_length="76">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.329" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="4108" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="538" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4613" g_stop="4900" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="826" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E723821" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3507" e_stop="3951"/>
          <exon e_start="4028" e_stop="4108"/>
          <exon e_start="4613" e_stop="4900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAATGGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAA</genome_strand>
        <mrna_strand>CCGAATTGGGAAGAATAACCGAACCGTTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAAAAAAGAGTCCAATCTCATGCTAA............................................................................TTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAAAACCATCTATCAAAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345600" ref_strand="+" ref_description="SGN-E345600 [cTOF-18-I19]">
      <seq>agaataaccgaagcggtgttggaagaaggtgaatggattcgttgtctttacaatctcatcttagtttgaggagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatgactacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtagaaaagagtccaatctcatgctaaatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcattaacagctgaagctgcaaaggagcatccaggagtaccatatgtcattacagcacctcttggccttcatgaattacttgttgatgttgtgaatgataggatcaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtttgtgctggaactggaaaatgtcagctccgccagtgacatacttgtgaagcttagcaagactttgttatgtagagagactttgttacctatgccagttgacttattanggtctgaatgctgagttactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3218" stop="6014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3518" g_stop="3590" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3743" g_stop="3951" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="282" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4047" g_stop="4108" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="344" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4613" g_stop="4723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="455" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="548" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5517" g_stop="5714" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="746" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E345600" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3518" e_stop="3590"/>
          <exon e_start="3743" e_stop="3951"/>
          <exon e_start="4047" e_stop="4108"/>
          <exon e_start="4613" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGC</genome_strand>
        <mrna_strand>AGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAG........................................................................................................................................................CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGACTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA...............................................................................................ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTANGGTCTGAATGCTGAGTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358437" ref_strand="+" ref_description="SGN-E358437 [cLHT-35-C8]">
      <seq>cgaagcggtgttggaagaaggtgaatggattcgttgtgtttacaatctcatcttagtttgaggagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcataagggtccttcaaaatccagatacttacctcagaggtattgtatggctacttcaagtagggagggtttgaaggggatagaagaaggcgatggagtgataattgtggatcatgggtcccgaagaaaagagtccaatctcatgctaaatgaatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcataacagctgaagctgcaaaggagcatccaggagtaccatatgtcattacagcacctcttggccttcatgaattacttgttgatgttgtgaatgataagatcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3226" stop="5842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3526" g_stop="3590" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3743" g_stop="3951" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="274" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4047" g_stop="4108" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="336" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4613" g_stop="4723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="447" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="539" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5517" g_stop="5542" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="565" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E358437" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3526" e_stop="3590"/>
          <exon e_start="3743" e_stop="3951"/>
          <exon e_start="4047" e_stop="4108"/>
          <exon e_start="4613" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCA</genome_strand>
        <mrna_strand>CGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTGTTTACAATCTCATCTTAGTTTGAGGAG........................................................................................................................................................CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCATAAGGGTCCTTCAAAATCCAGATACTTACCTCAGAGGTATTGTATGGCTACTTCAAGTAGGGAGGGTTTGAAGGGGATAGAAGAAGGCGATGGAGTGATAATTGTGGATCATGGGTCCCGAAGAAAAGAGTCCAATCTCATGCTAA...............................................................................................ATGAATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCA-TAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAAGATCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328407" ref_strand="+" ref_description="SGN-E328407 [cTOC-21-F19]">
      <seq>ttggaagaaggtgaatggattcgttgtctttacaatctcatcttagtttgaggagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatgactacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtagaaaagagtccaatctcatgctaaatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcattaacagctgaagctgcaaaggagcatccaggagtaccatatgtcattacagcacctcttggccttcatgaattacttngttgatgttgtgaatgataggatcaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtttgtgctggaactggaaaatgtcagctccgccagtgacatacttgtgaagcttagcaagactttgttatgtagagagactttgttacctatgccagttgacttattagggtctgaatgctgagttactggctccttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3236" stop="6024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3536" g_stop="3590" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3743" g_stop="3951" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="264" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4047" g_stop="4108" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="326" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4613" g_stop="4723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="437" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="531" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5517" g_stop="5724" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="740" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E328407" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3536" e_stop="3590"/>
          <exon e_start="3743" e_stop="3951"/>
          <exon e_start="4047" e_stop="4108"/>
          <exon e_start="4613" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTT-GTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCT-CTTGGCAG</genome_strand>
        <mrna_strand>TTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAG........................................................................................................................................................CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGACTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA...............................................................................................ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTNGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGGCTCCTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699225" ref_strand="+" ref_description="SGN-E699225 [FA09AG06]">
      <seq>ctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatggctacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtagaaaagagtccaatctcatgctaaatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcattaacagctgaagctgcaaaggagcatccaggagtaccatatgtcattaccgcacctcttggccttcatgaattacttgttgatgttgtgaatgataggatccaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtttgtgctggaactggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3443" stop="5904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3743" g_stop="3951" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4047" g_stop="4108" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="271" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4613" g_stop="4723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="382" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="475" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5517" g_stop="5604" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="564" r_length="89" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E699225" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3743" e_stop="3951"/>
          <exon e_start="4047" e_stop="4108"/>
          <exon e_start="4613" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGAT-CAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAAT</genome_strand>
        <mrna_strand>CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA...............................................................................................ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACCGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312217" ref_strand="+" ref_description="SGN-E312217 [cTOA-5-G13]">
      <seq>aaatactgtcgaggaaagaaactgcagtgcagaagggtaagaaatgagaagtcttgcaatatgtttggatgttaaagagcaaaagcaaagaaagaaaacaaaagcatacaccttttcagaaaagaaacaatagaaatgatataaatttgcgtatgagaaatcatcttaaaatatctcatgagaaaatctggcaaaataaaacaaagattgataggataaagggatccctttaaggttggatggttgggaagtggcaataggactaagaatgtgctaggagtaagaaaatcctaatatttgcatgttaatatctctattttcctttcttttaatactctcaaaaagttggaactttcattttgctttgtatatcttttatgacatttaggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggtatctttctttttatgtagtctgaattctcaagttgtgatagctgatgtagaatttgccgatgatgtatagtgctaggttttgacctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3925" stop="5115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4225" g_stop="4815" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E312217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4225" e_stop="4815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</genome_strand>
        <mrna_strand>AAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337372" ref_strand="+" ref_description="SGN-E337372 [cTOE-18-J10]">
      <seq>ttttatgacatttaggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcattaacagctgaagctgcaaaggagcatccaggagtaccatatgtcattacagcacctcttggccttcatgaattacttgttgatgttgtgaatgataggatcaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtttgtgctggaactgggaaatgtcagctccgccagtgacatacttgtgaagcttaccaagactttgttatgtagagagactttgttacctatgccagttgacttattagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="4298" stop="5996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4598" g_stop="4723" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="219" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5517" g_stop="5696" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="399" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E337372" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4598" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTC</genome_strand>
        <mrna_strand>TTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGGAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTACCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605038" ref_strand="+" ref_description="SGN-E605038 [57059]">
      <seq>acagcacctcttggccttcatgaattacttgttgatgttgtgaatgataggatcaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtctgtgctggaactggaaaatgtcggctccgccagtgacatactaatgaagcttagcaagacttcgttatgcagagagacttcgttacctatgccagttgacttattcggatctgaatgctgagttactgcctcttggcagtaggttcaattatctcccaaaactcaagttaccacgaggacattgatatttgggagttggtaatagcatttcaaatacaaatatcaactggaggatgcttagttactccccaccgctgatggagagttgcgagtgctggactgcagttctgattatcctcgtctgatgttaatcatttaactattgtaaatcatcatttgtgtcttactgaactcatggctgcccatcaggtgctggtgggttactctctattcctcaaaatatttggtttgagagttgcagtctaataatttgtgctgtagtgtcttcctttactcaattaccataaatctttgttgatttatggtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="4630" stop="6353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4930" g_stop="4962" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5517" g_stop="6040" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="558" r_length="525" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E605038" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4930" e_stop="4962"/>
          <exon e_start="5517" e_stop="6040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTA--TCCCAAAACTCAAGTTACTACGAGGACATTGATATTTGGGAGCTGGTAATAGCATTTCAAATACAAATATCAACTGGAGGATGCTTAGTTACACCCCACCGCTGATGGAGAGTTGTGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTTTTGTTAATCATTTAACTATTGTAAATCATCATTTGTTTCTTACTGAACTCATAGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCGAAACATTTGGTTTGAGAGTATTGCAGTCTAATAA-TTGTGATGTAGTGTCTTCCTCTACTC</genome_strand>
        <mrna_strand>ACAGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTCTGTGCTGGAACTGGAAAATGTCGGCTCCGCCAGTGACATACTAATGAAGCTTAGCAAGACTTCGTTATGCAGAGAGACTTCGTTACCTATGCCAGTTGACTTATTCGGATCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCTCCCAAAACTCAAGTTACCACGAGGACATTGATATTTGGGAGTTGGTAATAGCATTTCAAATACAAATATCAACTGGAGGATGCTTAGTTACTCCCCACCGCTGATGGAGAGTTGCGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTGATGTTAATCATTTAACTATTGTAAATCATCATTTGTGTCTTACTGAACTCATGGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCAAAATATTTGGTTTGAGAG--TTGCAGTCTAATAATTTGTGCTGTAGTGTCTTCCTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592821" ref_strand="+" ref_description="SGN-E592821 [36037]">
      <seq>agcaaatatcaactggaggatgcttattactccccaccgctgatggagagttgcgagtgctggactgcagttctgattatcctcgtctgatgttaatcatttaactattgtaaatcatcatttgtgtcttactgaactcatggctgcccatcaggtgctggtgggttactctctattcctcaaaatatttgggtttgaaattgcagtctaataaatttgtgctgtagtgtcttcctttactcaattaccataaatcaacaaagatttatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="5500" stop="6371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5798" g_stop="6059" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6060" i_stop="6344" i_length="285">
            <donor d_prob="0.000" d_score="0.81"/>
            <acceptor a_prob="0.896" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6345" g_stop="6363" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="281" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E592821" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5798" e_stop="6059"/>
          <exon e_start="6345" e_stop="6363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATATCAACTGGAGGATGCTTAGTTACACCCCACCGCTGATGGAGAGTTGTGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTTTTGTTAATCATTTAACTATTGTAAATCATCATTTGTTTCTTACTGAACTCATAGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCGAAACATTTGGTTTGAGAGTATTGCAGTCTAAT-AA-TTGTGATGTAGTGTCTTCCTCTACTC-ATTTCCATAAATCAACAAAGTTCTATTCACATGGGTTGTAGCTGAAATTGTTGGGTATTGTATTTAGCTTTTCTTGTCAATAAGAAGAATGTTCATGTTTCATATGATGAAATTTTTAGAATCCTTGATTTATGATCACCGTCCTCGCTTCTATACCGCGGCTATCTGTGTTTGAGTTTGGCACTATACATAGTTATGTGCAAAAGTGGATGACGCAGAACTTCATCTTTGCTCACCAACTCGAGCATGTGCTTTGCTGTAATTCATCCTGCTGCATTTTCATAAAATTGTGATAATTACGTAGAATTTGAGTAAAAGAAAAA</genome_strand>
        <mrna_strand>AGCAAATATCAACTGGAGGATGCTTA-TTACTCCCCACCGCTGATGGAGAGTTGCGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTGATGTTAATCATTTAACTATTGTAAATCATCATTTGTGTCTTACTGAACTCATGGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCAAAATATTTGGGTT-TGA-AATTGCAGTCTAATAAATTTGTGCTGTAGTGTCTTCCTTTACTCAATTACCATAAATCAACAAA.............................................................................................................................................................................................................................................................................................GATTTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368494" ref_strand="+" ref_description="SGN-E368494 [TUS-23-D14]">
      <seq>ttctttttctttttcatattcttcagattattaaatttagtcgaaccacccacacggaacttcgtcactccgaaaaacactttcataaaatgaaattccgaaatccagaattttcagcaatttgagaaacaacaaaaatcactttatttcactccaaagtattcaaatttgtattcatggttaactgcaaattttcaagtttcaaatatcatttttgtactttgatacaatgaaatatggccaaaaacgcatagtaacttgaaatcaagcattttactgcatcaaacgatcatctactacagcaaatataaccatagaaaatgaagaagaaggagaaaaaacagaggaagggaagaagcaaaccttagcaagcagatcggtgtaagacggttacgcaaaataacagggatacgagaaaaaaaggtttttggctgaattctagaagccaccgaaaagggtatatttggtaaaacgagctcactctatttatggcggtctacacgagaatggagaaccatctagtattttgatgaaatttgactaccatttgtatggccatttggataaatttttacgagtaattttcttaaatagtcccaaaaaatcatttaataatattattaatatttgttttatgattattaattatttaattttattttttttaaaaaaatatatttgacacacaaaaaaaatattgtcttttctattagaatgttatgtcactttttttaatttattaataatatttctttttagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="22009" stop="20650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21709" g_stop="20950" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="764" polyA_stop="776"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E368494" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21709" e_stop="20950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTA-TTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCAC-TTTTTTAATTTATTAATAATATTTC-TTTTAGATAA</genome_strand>
        <mrna_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATTAATTATTTAATTTTATTTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTTAATTTATTAATAATATTTCTTTTTAGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368493" ref_strand="+" ref_description="SGN-E368493 [TUS-23-D14](-)">
      <seq>aaccacccacacggaacttcgtcactccgaaaaacactttcataaaatgaaattccgaaatccagaattttcagcaatttgagaaacaacaaaaatcactttatttcactccaaagtattcaaatttgtattcatggttaactgcaaattttcaagtttcaaatatcatttttgtactttgatacaatgaaatatggccaaaaacgcatagtaacttgaaatcaagcattttactgcatcaaacgatcatctactacagcaaatataaccatagaaaatgaagaagaaggagaaaaaacagaggaagggaagaagcaaaccttagcaagcagatcggtgtaagacggttacgcaaaataacagggatacgagaaaaaaaggtttttggctgaattctagaagccaccgaaaagggtatatttggtaaaacgagctcactctatttatggcggtctacacgagaatggagaaccatctagtattttgatgaaatttgactaccatttgtatggccatttggataaatttttacgagtaattttcttaaatagtcccaaaaaatcatttaataatattattaatatttgttttatgattataaattatttaattttatttttttaaaaaaatatatttgacacacaaaaaaaatattgtcttttctattagaatgttatgtcacttttttaatttattaataatatttcttttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="21966" stop="20650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21666" g_stop="20950" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="729"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E368493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21666" e_stop="20950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTATTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAATTTATTAATAATATTTCTTTTAGATAA</genome_strand>
        <mrna_strand>AACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTATTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAATTTATTAATAATATTTCTTTTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241548" ref_strand="+" ref_description="SGN-E241548 [cLED-28-L2]">
      <seq>ttctttttctttttcatattcttcagattattaaatttagtcgaaccacccacacggagcttcgtcactccgaaaaacactttcataaaatgaaattccgaaatccagaattttcagcaatttgagaaacaacaaaaatcactttatttcactccaaagtattcaaatttgtattcatggttaactgcaaattttcaaggttcaaatatcatttttgtactttgatacaatgaaatatggccaaaaacgcatagtaacttgaaatcaagcattttactgcatcaaacgatcatctactacagcaaatataaccatagaaaatgaagaagaaggagaaaaaacagaggaagggaagaagcaaaccttagcaagcagatcggtgtaagacggttacgcaaaataacagggatacgagaaaaaaaggtttttggctgaattctagaagccaccgaaaagggtatatttggtaaaacgagctcactctatttatggcggtctacacgagaatggagaaccatctagtattttgatgaaatttgactaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="22009" stop="20863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21709" g_stop="21163" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E241548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21709" e_stop="21163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCAT</genome_strand>
        <mrna_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAGCTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGGTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242604" ref_strand="+" ref_description="SGN-E242604 [cLED-30-N10]">
      <seq>ttctttttctttttcatattcttcagattattaaatttagtcgaaccacccacacggaacttcgtcactccgaaaaacactttcataaaatgaaattccgaaatccagaattttcagcaatttgagaaacaacaaaaatcactttatttcactccaaagtattcaaatttgtattcatggttaactgcaaattttcaagtttcaaatatcatttttgtactttgatacaatgaaatatggccaaaaacgcatagtaacttgaaatcaagcattttactgcatcaaacgatcatctactacagcaaatataaccatagaaaatgaagaagaaggagaaaaaacagaggaagggaagaagcaaaccttagcaagcagatcggtgtaagacggttacgcaaaataacagggatacgagaaaaaaaggtttttggctgaattctagaagccaccgaaaagggtatatttggtaaaacgagctcactctatttatggcggtctacacgagaatggagaaccatctagtattttgatgaaatttgactacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="22009" stop="20864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21709" g_stop="21164" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E242604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21709" e_stop="21164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCA</genome_strand>
        <mrna_strand>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338568" ref_strand="+" ref_description="SGN-E338568 [cTOE-15-A2]">
      <seq>agaattcagccaaaaacctttttttctcgtatccctgttattttgcgtaaccgtcttacaccgatctgcttgctaagggaaaaatggcaggttcccatattgcacatgctgcatacaagggtccaagtgtagtgaaggagattatgatagggattgctcttggaatggttgccggaggtttgtggaagaagcaccattggaacaaccagaggagaactaaggaattctatgatctgcttgagaaaaatgagatcagtgttgtggtgaatgaccagtaactgaaagtctggtcagatactattcgaattttaatgtgttgttttctcacttggaattataatgaataatgatagttcatttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="20970" stop="22491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21270" g_stop="21346" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21347" i_stop="21899" i_length="553">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21900" g_stop="22197" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="375" r_length="298" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E338568" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21270" e_stop="21346"/>
          <exon e_start="21900" e_stop="22197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCTGAAGAATATGAAAAAGAAAAAGAAAAAGAAAACGTCTCTTTAATATCCGGGAAGTCAAATTTGCTTTACGAGAATATACACGAGTTGCTGAGGAAAGGGATTGAATGAAGGTAAAGGGGGAGAGGGTTATTCAATGATTTGTTTACTGTTGCTACTTTTTGTTTTTTTCTCTTACATTGGAGCTTCGTGGTTGACGCCTTTTCTTTAAAAGAAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAATATATATTCATG</genome_strand>
        <mrna_strand>AGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725076" ref_strand="+" ref_description="SGN-E725076 [FC26AA05]">
      <seq>gggcgattggcggccaatcggccgaattggtcttacaccgatctgcttgctaagaagggaaaaatggcaggttcccatattgcacatgctgcatacaagggtccaagtgtagtgaaggagattatgatagggattgctcttggaatggttgccggaggtttgtggaagaagcaccattggaacaaccagaggagaactaaggaattctatgatctgcttgagaaaaatgagatcagtgttgtggtgaatgaccagtaactgaaagtctggtcagatactattcgaattttaatgtgttgttttctcacttggaattataatgaataatgatagttcatttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="21022" stop="105756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21321" g_stop="21346" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="54" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21347" i_stop="21896" i_length="550">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.321" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21897" g_stop="22186" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="344" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22187" i_stop="22649" i_length="463">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22650" g_stop="22703" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="398" r_length="54" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E725076" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21321" e_stop="21346"/>
          <exon e_start="21897" e_stop="22186"/>
          <exon e_start="22650" e_stop="22703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTACACCGATCTGCTTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCTGAAGAATATGAAAAAGAAAAAGAAAAAGAAAACGTCTCTTTAATATCCGGGAAGTCAAATTTGCTTTACGAGAATATACACGAGTTGCTGAGGAAAGGGATTGAATGAAGGTAAAGGGGGAGAGGGTTATTCAATGATTTGTTTACTGTTGCTACTTTTTGTTTTTTTCTCTTACATTGGAGCTTCGTGGTTGACGCCTTTTCTTTAAAAGAAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAATATATATTCATGAGACATACATTAAAGTTGGGAAATGTTTGACTTGATTTGGTGGGGTGCGCCAGGCCTGGGCTGTAGTGCAACACCAAGGCGACGCGTGAAGGCCCAAGTAGCAAGCTACTTTCATGGACCTCCCGCTTAAAAAATTGAGTTAATATCGTGTGAGCCAATGGCTCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCCTTATTCAGAGAATGGGCCTTGATTTTTATAGCAAATCTTGGCTATATAGGCACTAATTATTTCTGATATGGGATGAGAATAGACTAATACAAAAACAATCTCCTTTGCTTTCTAAAGAATGTGTAAGAGCTTTTTTAGTTCTTATAGAAAGACCTATTCGTAATAATTTGAGTTTATTCATTCCGTCTTTCTTTATGAATTTTGAGAATCTATGGATAAAAGAAATACGATAAAAACCAATATGAATATTATAAAGACAATAAAAAAAA</genome_strand>
        <mrna_strand>GGTCTTACACCGATCTGCTTGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275770" ref_strand="+" ref_description="SGN-E275770 [cLEN-18-E6]">
      <seq>ttgctaaggtttgcttcttcccttcctctgttttttctccttcttcttcattttctatggttatatttgctgtagtagatgatcgtttgatgcagtaaaatgcttgatttcaagttactatgcgtttttggccatatttcattgtatcaaagtacaaaaatgatatttgaaacttgaaaatttgcagttaaccatgaatacaaatttgaatactttggagtgaaataaagtgatttttgttgtttctcaaattgctgaaaattctggatttcggaatttcattttatgaaagtgtttttcggagtgacgaagttccgtgtgggtggttcgactaaatttaataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="21039" stop="21985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21339" g_stop="21685" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E275770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21339" e_stop="21685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCT</genome_strand>
        <mrna_strand>TTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586977" ref_strand="+" ref_description="SGN-E586977 [75814]">
      <seq>taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggtcatcgattcacacgatattaacttaattttttaaggggaagagtccattaaggtagcttgctacctgggctcttgcgcgtcgcccatgcgttgcactactgcttgggcctggcgcaccccaccaaataaaaaaaaaaaaaaaagaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="24125" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23825" g_stop="23644" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23643" i_stop="21854" i_length="1790">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21853" g_stop="21832" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="203" r_length="21" r_score="0.773"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21831" i_stop="21408" i_length="424">
            <donor d_prob="0.407" d_score="0.00"/>
            <acceptor a_prob="0.683" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21407" g_stop="21370" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="241" r_length="38" r_score="0.658"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E586977" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23825" e_stop="23644"/>
          <exon e_start="21853" e_stop="21832"/>
          <exon e_start="21407" e_stop="21370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGATCATTGATTCACACGATATTAACTTAATTTTTTAAGGGGAAAAGCCCATTAAGGTAGCTTGCTACCTGGGCTTTTACGCGTCGTCCATGCGTTGCACTACTGCTCGGGCCTGGCGCACCCCACCTAATCGAGTACAACCTTTCAAATATAACATTTTTCTGCTTAATTCAATTATTTGGAAATAAACAATTAATGTTGCAATAAATTTGGCAGGATGTTTAACCATTAATCTCCAACACAACTCACTTTGATGATAGAATGTGATTAATACAAAAATAACATCTTACAATTTTCACAATCATCTAAACCATGACTAACAAATATACTTTGCACTGGAGAAATCTATTTGCTAGCAGTGTAAAACACATAGAAGTATGAAATGTGCCCTCTCGGTTTAGGAAGCAAAACTATAATCTGCTTCACAATAGCCAAATGATAAGAGTACAAGTGATATGTATATTATGCTCATGTCACAAGTTTGAACTCTGTTGCATACAATTGCTAGCCCAAGAACAGGGATTTCTTCCTGATCGAATGCAGTAAATATAAATAGGATAACAAAAAAACACAGAACATACTCATGTTAGAGAGCCTACAATGCTTAGAAGATCCACAGTATGACATTGAAGTGAAATAAGCAAATCCCAATATGTTTAAATCTGCATAGCAAATTCTATACCATTTACCAGCCAGACAATACTCGAATCATCACCATCAGCTGTTCATTTTATTATTAAGTAAAATCTGATATACAAGCCAACCATAAATTATTCTAATTGATAATAGTAATATGAATCCCCTCAAAAATGGATCTAATTGCACTTCAAGCTCCAAATTTTTGATGATTCAATTTATCTTTCTTGGGCGAAACGGGGGATATCTCGATCGGGGGAGAGAACGGAGAAATACCATATAACCCAATATTTCTGACAAGTCGCACTATATCTCAACCCAAGATGAAATTGGATCTCCAGGATTTCGGAATACAACTCTTGGAACACCAATAGGCATTAAATGAAAGAACGAATTGAATTAAATACTATATTTCACTTTGAGGTGAAAACGTAACAATTTTTTTTATTGTCTTTATAATATTCATATTGGTTTTTATCGTATTTCTTTTATCCATAGATTCTCAAAATTCATAAAGAAAGACGGAATGAATAAACTCAAATTATTACGAATAGGTCTTTCTATAAGAACTAAAAAAGCTCTTACACATTCTTTAGAAAGCAAAGGAGATTGTTTTTGTATTAGTCTATTCTCATCCCATATCAGAAATAATTAGTGCCTATATAGCCAAGATTTGCTATAAAAATCAAGGCCCATTCTCTGAATAAGGCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAGCCATTGGCTCACACGATATTAACTCAATTTTTTAAGCGGGAGGTCCATGAAAGTAGCTTGCTACTTGGGCCTTCACGCGTCGCCTTGGTGTTGCACTACAGCCCAGGCCTGGCGCACCCCACCAAATCAAGTCAAACATTTCCCAACTTTAATGTATGTCTCATGAATATATATTCAAATGAACTATCATTATTCATTATAATTCCAAGTGAGAAAACAACACATTAAAATTCGAATAGTATCTGACCAGACTTTCAGTTACTGGTCATTCACCACAACACTGATCTCATTTTTCTCAAGCAGATCATAGAATTCCTTAGTTCTCCTCTGGTTGTTCCAATGGTGCTTCTTCCACAAACCTCCGGCAACCATTCCAAGAGCAATCCCTATCATAATCTCCTTCACTACACTTGGACCCTTGTATGCAGCATGTGCAATATGGGAACCTGCCATTTTTCCCTTCTTTTAAAGAAAAGGCGTCAACCACGAAGCTCCAATGTAAGAGAAAAAAACAAAAAGTAGCAACAGTAAACAAATCATTGAATAACCCTCTCCCCCTTTACCTTCATTCAATCCCTTTCCTCAGCAACTCGTGTATATTCTCGTAAAGCAAATTTGACTTCCCGGATATTAAAGAGACGTTTTCTTTTTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAA</genome_strand>
        <mrna_strand>TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGTCATCGATTCACACGATATTAACTTAATTTTTTAAGGGGAAGAGTCCATTAAGGTAGCTTGCTACCTGGGCTCTTGCGCGTCGCCCATGCGTTGCACTACTGCTTGGGCCTGGCGCACCCCACCAAATAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAG-AAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544945" ref_strand="+" ref_description="SGN-E544945 [TUS-67-I16](-)">
      <seq>agaagtttagtctcaaatgcactctataaacttgatgaatcatcatcttatgccaccaccactgagtccttaagtatgcaaagctcatcaactggaccacacaaaagtgatgaattccttttaaaagagtctgaaaatacgaaataattgcaaggacataatatagaaatggaagttttgggagattttttatcagtacattttttgtacagtaatagaattagtatgatttcatttttgaatttttggtgagtgataatacaagcaagtgtagacagaagcatagatactttatcattttcaaataggttcatgaattgcttaatgctaattcgtttgtcctggctttttgtcattatgaaatgctatcatataattaaattatgtggatatagccggttcatttggaccccattttgaactaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="26394" stop="25366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25659" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E544945" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCAGATGCCGAC</genome_strand>
        <mrna_strand>AGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544946" ref_strand="+" ref_description="SGN-E544946 [TUS-67-I16]">
      <seq>agaagtttagtctcaaatgcactctataaacttgatgaatcatcatcttatgccaccaccactgagtccttaagtatgcaaagctcatcaactggaccacacaaaagtgatgaattccttttaaaagagtctgaaaatacgaaataattgcaaggacataatatagaaatggaagttttgggagattttttatcagtacattttttgtacagtaatagaattagtatgatttcatttttgaatttttggtgagtgataatacaagcaagtgtagacagaagcatagatactttatcattttcaaataggttcatgaattgcttaatgctaattcgtttgtcctggctttttgtcattatgaaatgctatcatataattaaattatgtggatatagccggttcatttggaccccattttgaactaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="26394" stop="25366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25659" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E544946" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCAGATGCCGAC</genome_strand>
        <mrna_strand>AGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309298" ref_strand="+" ref_description="SGN-E309298 [cLEY-22-P17]">
      <seq>gaagtttagtctcaaatgcactctataaacttgatgaatcatcatgttatgccaccaccactgagtccttaagtatgcaaagctcatcaactggaccacacaaaagtgatgaattccttttaaaagagtctgaaaatacgaaataattgcaaggacataatatagaaatggaagttttgggagattttttatcagtgcattttttgtacagtaatagaattagtatgatttcatttttgaatttttggtgagtgataatacaagcaagtgtagacagaagcatagatactttatcattttcaaataggttcatgaattgcttaatgctaattcgtttgtcctggctttttgtcattatgaaatgctatcatataattaaattatgtggatatagccggttcatttggaccccattttgaactacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="26393" stop="25368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26093" g_stop="25668" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E309298" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26093" e_stop="25668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCA</genome_strand>
        <mrna_strand>GAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATGTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTGCATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421706" ref_strand="-" ref_description="SGN-E421706 [STM-33-E24]">
      <seq>gcaaaagttgctgattttggacttgctcggtgttttggagctgacaaaactcatctcagcactggaattgctggaacattaggatatatggctcctgaatacctcgtaaaaggacagctaacagagaaggctgatgtctatagctatggggtgcttgttcttgaaatcgttagtggcagaaaaagtattgcctttgcagaggactctggctctctactacaaacagtgtggaagctgtacacaacaaatcaggtaactgaagcattagatcctctattgaaaggcgattttccgccagaagaggcatcaaaggtactaaaagtggggttgttgtgcactcaagcttctgtcgctttaagaccatcaatgagtgaagttgtccaaatgctaacgtgtgagggctatcaaattccagaaccatgccaaccaccattcttaaattcgaacttattagttggcggttcagtcaaatccagtataagaagtttagtctcaaatgcactctataaacttgatgaatcatcatcttatgccaccaccactgggtcctcaagtatgcaaagctcatcaactggaccacacaaaagtgacgaattccttttaaaagagtctgaaaataggaaataattgcaaagacaaatatagaaatggaaattttgagagatttatgatcagtacattttttgtacagtaatagaattgctgtagttgtgcatttttagggtgaatatttttgcatttttggcaaaaagattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="27083" stop="25563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26783" g_stop="26704" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26703" i_stop="26615" i_length="89">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26614" g_stop="26470" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="225" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26469" i_stop="26350" i_length="120">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26349" g_stop="25872" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="702" r_length="477" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E421706" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421706" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26783" e_stop="26704"/>
          <exon e_start="26614" e_stop="26470"/>
          <exon e_start="26349" e_stop="25872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAATTGCTGATTTTGGACTTGCTCGGTGTTTCGGAGCTGACAAGACTCATCTCAGCACTGGAATTGCTGGAACATTGTAAGTCAACAATTCACAAATACATATCAACACAATTCACATATATAAACTAGTTCCTTTCTTAAACTTAATCTGTGATCGGTGTACAGAGGATATATGGCTCCTGAATACCTCGTTAAAGGACAACTAACAGAGAAGGCTGATGTCTATAGCTACGGGGTGCTTGTTCTTGAAATTGTCAGTGGCAGAAAAAGTATTGCCTTTGCAGAGGACTCTGGCTCTCTACTACAAACAGTAAGAATGCTATAGATTTCTCTTTTGCATGGTCGTTATATGAGTATCATTGAACTTTAGTGGTAAAGTCACAAAACTATGTTTATCATATAGCTCAGTATATTGTCATTTTGGTTTCAGGTGTGGAAGCTGTACACAACAAATCAGGTAACTGAAGCATTGGACCCTCTACTGAAAGGCGATTTTCCGCGAGAAGAGGCATCAAAGGTACTAAAAGTGGGGTTGTTGTGCACTCAAGCTTCTGTCGCTTTAAGACCATCAATGAGTGAAGTTGTCCAAATGCTAACGTGTGAGGGCTATCAAATTCCAGAACCATGCCAACCACCATTCTTAAATTCGAACTTATTAGCTGGCGGTTCAATCAAATCCAGTATAAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTA</genome_strand>
        <mrna_strand>GCAAAAGTTGCTGATTTTGGACTTGCTCGGTGTTTTGGAGCTGACAAAACTCATCTCAGCACTGGAATTGCTGGAACATT.........................................................................................AGGATATATGGCTCCTGAATACCTCGTAAAAGGACAGCTAACAGAGAAGGCTGATGTCTATAGCTATGGGGTGCTTGTTCTTGAAATCGTTAGTGGCAGAAAAAGTATTGCCTTTGCAGAGGACTCTGGCTCTCTACTACAAACA........................................................................................................................GTGTGGAAGCTGTACACAACAAATCAGGTAACTGAAGCATTAGATCCTCTATTGAAAGGCGATTTTCCGCCAGAAGAGGCATCAAAGGTACTAAAAGTGGGGTTGTTGTGCACTCAAGCTTCTGTCGCTTTAAGACCATCAATGAGTGAAGTTGTCCAAATGCTAACGTGTGAGGGCTATCAAATTCCAGAACCATGCCAACCACCATTCTTAAATTCGAACTTATTAGTTGGCGGTTCAGTCAAATCCAGTATAAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGGGTCCTCAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGACGAATTCCTTTTAAAAGAGTCTGAAAATAGGAAATAATTGCAAAGACA-AATATAGAAATGGAAATTTTGAGAGATTTATGATCAGTACATTTTTTGTACAGTAATAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563204" ref_strand="+" ref_description="SGN-E563204 [1565]">
      <seq>caacaaactactttgatccttcaacaaaagtaggtcaagggaggaaatggttctgtatacaaaggaactctgcctaatgggaatgttattgcagttaagagactttttttcaatacaagacaatgggttgatgacttcttcaatgaggttaatctcatccatgggaattgaacacaaaaatcttgtcaagttgttgggttgcagcattgaaggccccgagagcctgctcgtatacgagtttgtgaccaataagagtctagatcaatacctctttgataaggacaaggtaaagattctaagttgggaagaacgtttccgtattatagttggaacagcacaaggcattgatttccttcatggaggttcagagatcagaatcatccatagggacatcaagagctccaatgtacttcttgatgaaaatcttgaagcaaaagttgctgattttggacttgctcggtgttttggagctgacaaaactcatctcagcactggaattgctggaacattaggatatatggctccctgaatacctccgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="27748" stop="26401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27448" g_stop="27176" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27175" i_stop="26939" i_length="237">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26938" g_stop="26704" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="510" r_length="235" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26703" i_stop="26615" i_length="89">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26614" g_stop="26584" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="542" r_length="32" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E563204" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27448" e_stop="27176"/>
          <exon e_start="26938" e_stop="26704"/>
          <exon e_start="26614" e_stop="26584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAA-GGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCAT-GGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTGGTAATTATCTTTCTTTCTTATTCCATACATAAAAGGGTGAGTTTAGAATTCAACTGTCAAGACATCTTTCTGGTAAAACCCAAAGTGACCAAAAGCTGAGGCCCCAAAGGTTGGGGCAGAGCGGAAAATACCCTGACAGTTGAACCTGGACTTTGACACAGCATTATTCTTACCTATACATTTCTATGTTGTGATAGTTATATACTTACTGATTGAGTTGTTGAACTTTTTTTGTAGATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTCTTGATGAAAATCTTGAAGCAAAAATTGCTGATTTTGGACTTGCTCGGTGTTTCGGAGCTGACAAGACTCATCTCAGCACTGGAATTGCTGGAACATTGTAAGTCAACAATTCACAAATACATATCAACACAATTCACATATATAAACTAGTTCCTTTCTTAAACTTAATCTGTGATCGGTGTACAGAGGATATATGGCT-CCTGAATACCTCGTTAAA</genome_strand>
        <mrna_strand>CAACAAACTACTTTGATCCTTCAACAAAAGTAGGTCAAGGGAGGAAATGGTTCTGTATACAAAGGAACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTTTTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTTAATCTCATCCATGGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTG.............................................................................................................................................................................................................................................ATAAGGACAAGGTAAAGATTCTAAGTTGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTTCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTCTTGATGAAAATCTTGAAGCAAAAGTTGCTGATTTTGGACTTGCTCGGTGTTTTGGAGCTGACAAAACTCATCTCAGCACTGGAATTGCTGGAACATT.........................................................................................AGGATATATGGCTCCCTGAATACCTCCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689204" ref_strand="+" ref_description="SGN-E689204 [t3_tus_80_I23]">
      <seq>gaggtttttgtgacctacaatttaaacttttcaaagaaatggtcccaggaagatgacttcgtttcataaattgtatttcttattttgagattttttatatataaaaggaaaaatcttctataaaagaaacacgaaatttagattaaatttatgaaagaatacaaaatcaattgacttttgtgagcctgttttgactttatcttctgcattttgtactgaaaaaaatgctgttattttcaggaataagcaaaggggtgatagtagctatagttcttggagtgacagctttcaccatgcttgctctctcagcggcttacacagctcgtaaaagatcattaaggcgaaaacgagcacgcattaatcttggcaaaatatcgaattcatacaagaagtcgagcttgaattttaaatatgaaaatcttgagaaggcaacaaactactttgatccttcaacaaaagtaggacaaggaggaaatggttctgtatacaaagggactctgcctaatgggaatgttattgcagttaagagactatttttcaatacaagacaatgggttgatgacttcttcaatgaggtcaatctcatccatggaattgaacacaaaaatcttgtcaagttgttgggttgcagcattgaaggccccgagagcctgctcgtatacaagtttgtgaccaataagagtctagatcaatacctctttgataaagacaaggtaaagattctaagatgggaagaacgtttccgtattatagttggaacagcacaaggcattgatttcctccatggaggttcagagatcagaatcatccatagggacatcaagagctcccatgtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="28291" stop="26501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27996" g_stop="27646" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27645" i_stop="27527" i_length="119">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27526" g_stop="27176" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="702" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27175" i_stop="26939" i_length="237">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26938" g_stop="26801" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="840" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E689204" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27996" e_stop="27646"/>
          <exon e_start="27526" e_stop="27176"/>
          <exon e_start="26938" e_stop="26801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAGGTATAGTTTGATGAAAAAAATAAAATAGTTTCGTAGCTTTACTGCTACGATTACTAACGTTCAATGACTATATTGTAACTTTAGAACTATTGTAACTTTTTTTGGTTGCATTGTTGCAGCACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTGGTAATTATCTTTCTTTCTTATTCCATACATAAAAGGGTGAGTTTAGAATTCAACTGTCAAGACATCTTTCTGGTAAAACCCAAAGTGACCAAAAGCTGAGGCCCCAAAGGTTGGGGCAGAGCGGAAAATACCCTGACAGTTGAACCTGGACTTTGACACAGCATTATTCTTACCTATACATTTCTATGTTGTGATAGTTATATACTTACTGATTGAGTTGTTGAACTTTTTTTGTAGATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTC</genome_strand>
        <mrna_strand>GAGGTTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAG.......................................................................................................................CACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACAAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTG.............................................................................................................................................................................................................................................ATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCCATGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480569" ref_strand="+" ref_description="SGN-E480569 [cSTD-14-M8]">
      <seq>gagagaactagtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggcgtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcctcttacatatttcagaattgtcacacgacccggtttccagagtttcagatgtggtatctgtgggacagcaactttctttaatgtgtataggacaggacgttcgtggtaatattaatttatcattaaaagccaccctgcctagacctaaatctaagacagacatttctgttgatgaacctgttgctcctactagtcaagaggttaatgtttgggctgccattgaggatgtatccaatgagctagaaaaccaaggtgctactgtgggacctgaaactaatgattcaactttgaagtcagctacaccagcagttctaatcccaagtgcggcatagtgtgatgaggatgaaaaaagcgatgctctgaatttgaaagtgataatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="39568" stop="37519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39259" g_stop="39180" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38855" g_stop="38712" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38711" i_stop="38172" i_length="540">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38171" g_stop="37819" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="586" r_length="352" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E480569" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39259" e_stop="39180"/>
          <exon e_start="38855" e_stop="38712"/>
          <exon e_start="38171" e_stop="37819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCGGTAAGTTCTCTTTTTTCCTCCTTCGCTATCAAAACTTTATACTGCCAAGGATCTTAGCAGTTTAAAACTTAATGCTTTTTGAACTCGCTCAGTCATAGTAATTAGTACTCACTCTACAGGAGTCGATATTACCTTACTAATTTGCAACTGCTCACCCGTACCATGCAAATAGAGCTTGAGACTATTTGCAGAAAATAATCATGACCTCCTGTGGCAGTAGATCATTGCTTTCAAGGGCAAGTGTAAAATTTTTCTTTGAAACTTTGAAATTTAACTAGAATATTGCTTGCAGTCTGTGCCATGTTCCTCTCAAATTTTTTTTCTTTCAGCAAAGGTTAATGTCTATTTGTAAAAATTGTGTAAATCATGCATCAATTTATAGTTTCTAAAGCTATGTTAAACGCATAAGTCAAATAGTTAATTTTGTCCTTTCTGTACTTGAGGAACAAAGTTTGAGGCATGGAGGTTTAGGCTAGACTGGCTATTCCTTCCATGTTATCGTTTTGTGATTTATTTGTGTCTTTTTTTTTTTACTTTTAGGTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGGACCTGTAACTAATGATTCAACTTTGAATTCAGCTACACCAGCAGTTCTAATCCGTAGTGCGGCGGAGTGTGATGAGGAGGAAAAAAGTGATGCTCTGAATTCGAAAAGTGATAATGGATC</genome_strand>
        <mrna_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGCGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTGTCACACGACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTCTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCCATTGAGGATGTATCCAATGAGCTAGAAAACCAAGGTGCTACTGTGGGACCTGAAACTAATGATTCAACTTTGAAGTCAGCTACACCAGCAGTTCTAATCCCAAGTGCGGCATAGTGTGATGAGGATGAAAAAAGCGATGCTCTGAATTTG-AAAGTGATAATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428619" ref_strand="+" ref_description="SGN-E428619 [STM-50-L15]">
      <seq>gagagaactagtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggcgtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcctcttacatatttcagaattgtcacacgacccggtttccagagtttcagatgtggtatctgtgggacagcaactttctttaatgtgtataggacaggacgttcgtggtaatattaatttatcattaaaagccaccctgcctagacctaaatctaagacagacatttctgttgatgaacctgttgctcctactagtcaagaggttaatgtttgggctgccattgaggatgtatccaatgagctaggaaacaaggtgctactgtgggtacctgaactaatgattctactttgaagtcagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="39568" stop="37604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39259" g_stop="39180" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38855" g_stop="38712" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38711" i_stop="38172" i_length="540">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38171" g_stop="37904" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="501" r_length="267" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E428619" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39259" e_stop="39180"/>
          <exon e_start="38855" e_stop="38712"/>
          <exon e_start="38171" e_stop="37904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCGGTAAGTTCTCTTTTTTCCTCCTTCGCTATCAAAACTTTATACTGCCAAGGATCTTAGCAGTTTAAAACTTAATGCTTTTTGAACTCGCTCAGTCATAGTAATTAGTACTCACTCTACAGGAGTCGATATTACCTTACTAATTTGCAACTGCTCACCCGTACCATGCAAATAGAGCTTGAGACTATTTGCAGAAAATAATCATGACCTCCTGTGGCAGTAGATCATTGCTTTCAAGGGCAAGTGTAAAATTTTTCTTTGAAACTTTGAAATTTAACTAGAATATTGCTTGCAGTCTGTGCCATGTTCCTCTCAAATTTTTTTTCTTTCAGCAAAGGTTAATGTCTATTTGTAAAAATTGTGTAAATCATGCATCAATTTATAGTTTCTAAAGCTATGTTAAACGCATAAGTCAAATAGTTAATTTTGTCCTTTCTGTACTTGAGGAACAAAGTTTGAGGCATGGAGGTTTAGGCTAGACTGGCTATTCCTTCCATGTTATCGTTTTGTGATTTATTTGTGTCTTTTTTTTTTTACTTTTAGGTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGG-ACCTGTAACTAATGATTCAACTTTGAATTCAGCTA</genome_strand>
        <mrna_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGCGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTGTCACACGACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTCTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCCATTGAGGATGTATCCAATGAGCTAGGAAA-CAAGGTGCTACTGTGGGTACCTG-AACTAATGATTCTACTTTGAAGTCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318221" ref_strand="+" ref_description="SGN-E318221 [cTOA-29-N8]">
      <seq>gaaatcaaggattatcgtttattgactgatattctgggtctggaggatcatctgggtgacatggattttaagattgctggtacccgtaatggtgtaacggccatacaattagatattaaacctgctggaattcctttggatatcatatgtgagagtctagatcctgcacttaaagggaggcttcaaatcctcgagcacatggagcgtgagataagtgctccacgtattcaggataacatatattctcctcggctagttacgtcaaaatacagcaatgatgcacttcgtcgcttgattggtcctgttggtgctttgaagaggaaaattgaagatgaaacaggtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggagtatataaaggtattgttgtatctgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="41404" stop="38487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41104" g_stop="41069" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41068" i_stop="40197" i_length="872">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40196" g_stop="39977" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="256" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39976" i_stop="39885" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39884" g_stop="39801" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="340" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39800" i_stop="39260" i_length="541">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39259" g_stop="39180" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="420" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38855" g_stop="38787" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="489" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E318221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41104" e_stop="41069"/>
          <exon e_start="40196" e_stop="39977"/>
          <exon e_start="39884" e_stop="39801"/>
          <exon e_start="39259" e_stop="39180"/>
          <exon e_start="38855" e_stop="38787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAGGATTATCGTTTATTGACTGATATTCTGGTGAGGACTGTTGTTTCAATCTTTTTGAATGTTTGTCTTAGCTCTGTGAAGTTCAGTGAAGGGGACAAAAAAGAGGGAAAGAAGCATCTTCTAATGAATTCTCAAGGGATGAAAAAACAAACAAATTAGTTTCGGTAAATATCGTGTAGGCTTGGTGGTAAAATTTACCTTGTTCAGTATTCCAAATGGATATTAGGATTTGGATCTTTTTTTCAAGACAATAATTGGAAGCTCATAAACTATTGCTCTATACCGGCAGCTGGAGTAGGTTCAATTTATTTGGTCACCTTGAAAGTGTGCTTTAAAGTTGTGAAATCATCCGATCACTAAAGGCCTAGGCTTTAAGAGGTGTATCTTCTATTTAGCCAACACTTGCTTGCATAATTATGATTGTAATATGAAATTCTTGACTTCTCATATGACCTTTTATCTCCTCTTGGATTTCACCAAATATATGAAAACCTGCTATTTCTTGCTTTGGTATAAACTTAGATTCAACTGTTGTGTGTCTCCATTTGGTTCATGTTCTAGCTTGGTCTTGTGTTTTTGCATCCGTTTGACTTGAGAAGCCCCCAGTCTGAACCTTGTCTTTCTGCCTTACTTGCATTGGCATGAATAGATTTTACTTCACACCGGAAGTCCAGAACTATATGCTCATAAAACTTATGTCATTGAAAACTGCAAATCATGTAAACAAGAGTTATCAACTTCAAAACTTTACTTACCATCACCAATTGTATAGTCTATATTACTGCTCTTCCTCTGGCTTATTGGTTTAAGTTATATCCTAAGTTTCTTTTGTCTGAAGCTGGTCTCTATCTTTCTCTAAATTTGGTGCGAGTTTTACTTACCTGATTAAGTAACTCCTCTAGGGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAGGTAATTAGCTTCAGTCATTGATCTTATGTTTCTCTAACTCCTTAGTTTCACTTCATTTAACATGTCTCTTTTGATGAATGCTTCAAATACAGTTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAGGTGCAGTCAACAGTTTGCATTAGACTTCTCTGTTACTTTTACCTGGTTACTTTGGGTGATCTTTGACATGAAGGCGTGGTTAATAATATTCTTTTTCATTCCTCTCTTGTGTATGATCATTGATGTAACTCTAATGCCAACTGTTCTTGACTTTCTAAGTAGAATTTTCTTCCCTTCAAACTTGTTGCAGGAATACTTGGTAATATGCTAATTGTAAACCAGTTTTTTCTTTTGCTTCATATTGCTTATACACATTATCGCTTTGCCTTGTTAAGTTTTGTAAAGATATGAAACTTGTGCCCAACTTAGCCTCAAAAGCTGACTCATGAGGGAAGGACTCTAACCTCCCTAACAAATGGATACACACAGAGACACACACATAGAGACAGATAATGTGTATCTTACAGCACTGTATTTTCATATGTAAACACTTTCTAATGGTGTTCTTTCCAGGCCGTAGTTTTCATTTTTAATTTCTCCAGCTGATTCCTTTGTTACTCCTAAGATTGCGTTCATTTCTCCTTGCTGATTCATAATGTAGGTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAA</genome_strand>
        <mrna_strand>GAAATCAAGGATTATCGTTTATTGACTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG............................................................................................TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706545" ref_strand="+" ref_description="SGN-E706545 [FA30BA11]">
      <seq>ccacgaggtgcaggtaatggcaagtgtgctttcatctgacgggaaacaagatccagatatattggcagctaatgcatcatctgctgctctaatgttgtcagatattccttggggtgggccaattggagtaatacgtattggaaggatttcaggtcaatttgttgtaaatccaagcatggaggagcttagcatcagtgatcttaacttggtatatgcatgtacgagggataaaactttgatgatagatgtccaagctcgtgaaatatctgaaaaggatttggaagctgctttgagacttgctcatccagaggctgttaagtatcttgaccctcaaattagactcgcagctaaagctgaccctacttatggaaagttcgagcgtggagaagctttggaaaaaatcacacaggacgttaaaagagctcttgaggaagaaggtgatgaggaaggcctaaaaattctaccaaagacagttgatacagtaaggaaacaggttgttcgcagaaggatcatttctgaagggcttagagtggacggaaggtgtcttgatgaagttaggcctttgtactgtgaagctggtaatttacctgtattacatggatctgcaattttttcaagaggggatactcaggtcctttgcactgttacccttggagcacctggggatgctcaacgtctggattccctggtcggtccttcaagcaagcgtttcatgctgcattatagctttccaccgttttgtacaaatgaagttggcaaacgaactggcctgaataggcgtgaagttggtcatggcactcttgctgaaaaggctctgcttgctgtattacccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="44521" stop="41192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44221" g_stop="44209" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44208" i_stop="44122" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44121" g_stop="43951" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="184" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43950" i_stop="43518" i_length="433">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43517" g_stop="43392" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="310" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43391" i_stop="43312" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43311" g_stop="43266" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="356" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43265" i_stop="43167" i_length="99">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43166" g_stop="43150" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="373" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43149" i_stop="43015" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43014" g_stop="42895" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="493" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42894" i_stop="42493" i_length="402">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42492" g_stop="42355" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="631" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42354" i_stop="42239" i_length="116">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42238" g_stop="42076" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="794" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42075" i_stop="41533" i_length="543">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41532" g_stop="41492" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="835" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E706545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44221" e_stop="44209"/>
          <exon e_start="44121" e_stop="43951"/>
          <exon e_start="43517" e_stop="43392"/>
          <exon e_start="43311" e_stop="43266"/>
          <exon e_start="43166" e_stop="43150"/>
          <exon e_start="43014" e_stop="42895"/>
          <exon e_start="42492" e_stop="42355"/>
          <exon e_start="42238" e_stop="42076"/>
          <exon e_start="41532" e_stop="41492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGAGGTGCAGGTAAGCTGGTGTCTTTTTATTGCAATTAACTTGATAGTAGTAGTTTGTTTGGCGGCTATAAGCTTCGCTGACTCACATTCTCCCCAGGTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAGGTAATATCTTATATCAGTTGGCATCCTCAGGATAAATTTAGAACGTTAATGCTTTCCAATTTCAGCAAGTTGACTTTCATTCTGGTGGCAGTTACGACCCTGGCATCTTGAGAACTTAGGCCATATCCTTGGGTGCTGTACTTGTTTACACTCTTAACAGAAGATGGTTGAATTAAGTGTAAGAAATGGAGCTTTGGGGCTCATGCAGAAGTTGTAGTTTCTTGATTATATAGCCACTGCTGGGTGTCAATAGTGGATAACTAGCTTAATTTCCAAGAATTTGCATACTAGGCAAACTATTTCTCTTCCATAATATTAGGAAGAACTACATAGTAAGAATATAACAAATGTTGTTGTCACTGATGCCAATTATGTCCACCAGTAATTGCAGTCCTGTCCCTTGATTGAAGTCTTCTTATTGGATGTCATGCAGCTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAGGTGAGACATTGCTGGCTATCAATTTGTCACTGCTTCTCCATAACTCCAAACCAATAATTTTGATTTTTTTGAATATTCAGGCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTGGTAAGCAGAAGAAAGAGTATAAGCTGTCTATGGTATCAGAAAAAACATTTGAAAAGATTCAGAATCTGGCCAAAGAACCTATAGAAGCTGTTTTTACAGACCCTACTTATGGAAAGGTATCTATTTTCTTACTGGAAGATGAATTTAGGAACTTCACTGTTTTTCACTATTCATGTTATATAGTCTATTGATAAAGGCTGCAGGTACCTTCTTTTCACCTCATTAATACTATGTTTTCCATTCTTATTCAGTTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAGGTAAGCTTGTAGATGCTGAAGTTTATCTTTTGTGCTTCTGATTTTGAGGTTTTATGTTTACATCATTAATAAACAGAAAATTTTTGTTTCTTCTTTTCCTTTTGTTGATTGCAGAGGATCACATGATCAATGATTGACCTTCTAGGTTATTTCCTCATGCATTTTATCTTTGGCAAACTAATGTGTATTTCCCTCATGATTGGTCAATAGTAGGTTGCATGTGTTTTTTGGCTATATAAGTCCATTAGCAAACATTGACATATTCTAAATAAAGACTTCAATACTTCAGTTACTGCATTTTAAGGACTATTTGTTTGGGCTTCTTTTTACATCCTAAACTAAGGTTTTAGTCTTTTAATTCATTTTGTGATATTAACCTCCTCAAGTTTCTGACAACATCAGGTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAGGTCAGTATATTCATTTTTCACTAAGAATACATGATGTACTATGATTAAGGGTTATCATCACTTGCAAATATGCAATCTTGTTGTCATTCATTATCCCTTATGAGATGTTTATACAGGTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATGGTAAGCCGTTCAGTTCTCAGGTTTATAATATGGTCTGCTCCTGAAGTTAGTGAAAGCTGTAAATGGACCTTAATACTAGATTGTCAATTTGCAGTTGTAACTTGTAATCAACCTCAGTATGTGGAAACATTTATGCCATTTTGTACCAACAACGAGGGAAGAGAAATGTTGATAATGTACTCTCTTCCCTTTCCCATTAACCTTATTTTTCTTGTTTTATTGTTGTTTCCTTGTTTCATGTAAAAACCAAATACTGGCTAAAGGAAAAAAAGAGAAGATCTTATGTCTCTCTCATGCAATATCGTAAAGTAGGGGTTGGGTTTCCTGCATTGTTCTTTATGTTTGATTAATAAATATTTATATCGTCTGGTATAACTGGTTCTAGTTTTTGAGTCTCTGTCCACTTGGATCATCTTTTGGGTTTCTTGGTCTTTCTGTTCATTTGCTACGTAATTTATGTTCGTGGTATCTTTTTCTAATTACGGCATCTCCAGGGTAATTTGTGGATCATTTTCTTGATACTAGATGCTTAATCTTCTACAGGCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</genome_strand>
        <mrna_strand>CCACGAGGTGCAG.......................................................................................GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG................................................................................GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG...................................................................................................ACCCTACTTATGGAAAG.......................................................................................................................................TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG....................................................................................................................GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449898" ref_strand="+" ref_description="SGN-E449898 [cSTS-7-H6]">
      <seq>cgcacggcggacaaacacaactgagttttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcagactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagtaaaattctcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattntaaacggtactgttttccgggagcctatactatgcactaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48664" stop="51530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48964" g_stop="49288" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="373" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="483" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="521" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="599" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="653" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51230" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="706" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E449898" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48964" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGC----ATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGT</genome_strand>
        <mrna_strand>CGCACGGCGGACAAACACAACTGAGTTTTCTCACAGCGGCAGAAATTGGCAACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCAGACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGTAAAATTCTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTNTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACTAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449732" ref_strand="+" ref_description="SGN-E449732 [cSTS-7-I6]">
      <seq>cgcacggcggacaaacacaactgagttttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcacactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagtaaaattctcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccacagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagagacattttaaacggtactgttttccgggagcctatactatgcactaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48664" stop="51380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48964" g_stop="49288" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="373" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="483" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="521" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="599" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51080" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="635" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E449732" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48964" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGC----ATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACA</genome_strand>
        <mrna_strand>CGCACGGCGGACAAACACAACTGAGTTTTCTCACAGCGGCAGAAATTGGCAACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCACACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGTAAAATTCTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCACAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAGACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446300" ref_strand="+" ref_description="SGN-E446300 [cSTA-20-L13]">
      <seq>cgcacggcggacaaacacaactgagttttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcagactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagtaaaattctcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48664" stop="49856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48964" g_stop="49288" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="373" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49556" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="415" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E446300" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48964" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGC----ATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGAT</genome_strand>
        <mrna_strand>CGCACGGCGGACAAACACAACTGAGTTTTCTCACAGCGGCAGAAATTGGCAACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCAGACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGTAAAATTCTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449690" ref_strand="+" ref_description="SGN-E449690 [cSTS-7-A14]">
      <seq>gcacggcggacaaacacaactgagttttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcagactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagtaaaattctcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcactaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48665" stop="51510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48965" g_stop="49288" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="372" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="482" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="520" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="598" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="652" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51210" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="685" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E449690" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48965" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGC----ATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATG</genome_strand>
        <mrna_strand>GCACGGCGGACAAACACAACTGAGTTTTCTCACAGCGGCAGAAATTGGCAACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCAGACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGTAAAATTCTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACTAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573309" ref_strand="+" ref_description="SGN-E573309 [32600]">
      <seq>tgagtttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcagactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagcaaaattgtcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgacgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacatttcccaggattgttcctggttggaagaaacccatttgtattgcctaagcatgcttctggtgatcagtatcgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48686" stop="51532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49010" g_stop="49288" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="307" r_length="279" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="351" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="461" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="499" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="577" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="632" r_length="55" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.782" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51233" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="689" r_length="57" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E573309" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49010" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACA-TTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTG-GTAGGCATGCTTTTGGTGATCAGTATCGTGCC</genome_strand>
        <mrna_strand>AACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCAGACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGCAAAATTGTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGACGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGCCTAAGCATGCTTCTGGTGATCAGTATCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624060" ref_strand="+" ref_description="SGN-E624060 [GI|5738863]">
      <seq>cttttttaagccatctaaagtggtatgctggccgtccgactcagactccggtgttcctccatggccggcgttgcttcttttgtctcatcttcatcggcttctgcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcttcctctggtccgactagcaaaattcgcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatcgaattattaatgggcccggaaagctcaaaatggtttttgtgccagaaaatggggaatcccctatggagctggatgtttatgattttaaaggtccgggtattgcacttgccatgtacaatgttgaccagtcaattcgagcgtttgctgaatcatcaatgtcaatggcattttcaaagaaatggcctctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactctatatggtatgagcatagactgatagatgacatggtagcttatgcattaaaaagtgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatttgctcgctcaaggatttggttctctgggcctcatgacttctatattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaatacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaagggacttggacatagggctcagcttgatgggaatcaaaagttgttggaatttgttcacacccttgaagcttcttgcattgggacaatagaatccgggaagatgactaacttagctatattagctcatggatccaaggtgtcaagagaattctacttgaacactgaagagtttattgatgctgtagcacagaaacttcaagagaagcttcatgcctcggtgcctatttaagttatcctgaattatgtagtgagaacatgtatgagctgaagaagatcatgagcagcatccttttcacagtgaagcggccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48712" stop="54457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49012" g_stop="49288" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="321" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="431" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="469" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="547" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="601" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="703" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51385" g_stop="51473" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="792" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51575" g_stop="51678" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="896" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="965" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1081" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1082" r_stop="1116" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1259" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="53414" g_stop="53536" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1260" r_stop="1379" r_length="120" r_score="0.951"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="53988" g_stop="54152" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1380" r_stop="1541" r_length="162" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E624060" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>1547</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49012" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51279"/>
          <exon e_start="51385" e_stop="51473"/>
          <exon e_start="51575" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53536"/>
          <exon e_start="53988" e_stop="54152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTGGTGAGCTAGTTGATTTCAGTCTGTATTTATTTTATGAGGCAAAACATACACATACGAAGCATACTCATGCCAATACTCAACTTGTTTGTTGATTTTTATTTTCAGTGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAGGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAAGTAAGTGATGGTTTCCTGCTTCAGTGTCATCTGTACGGCATATATCATCCTGCTCTTTTTCTTTACTCCACACTTGGGATTTCTGATATCTCCTCTAACTGTCTGTCAACCCTTGCCCTACTCCTGGGTAAGGACAGAGTCCTCCTCCTCTTGGTATTTGCTACTCAAAATACCATGTATTTCGAGGTGCAAAAGATGTCCCTTACACCAATTTTATTTATTTTTTAATAAAGTGAACAATAAATTCTATAGCCTAAGCCACCTTGAATAATTATACTAAGAACTTTTCACCTTCTTACTGATAAATTCTTTATTATGAAAAATGTTTTTGACACAAAAACTTGATTCAGTTAGCAAGATAAACCAAATGAAGAGACGTTAACATGAATAGTCTGCGACTTCTCTCTTAATTTCAGTGAAACTCAGTATTTGAGTAATTATACTTTTGCAGGGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCC-TTTCACT</genome_strand>
        <mrna_strand>CTTTTTTAAGCCATCTAAAGTGGTATGCTGGCCGTCCGACTCAGACTCCGGTGTTCCTCCATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCTGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCTTCCTCTGGTCCGACTAGCAAAATTCGCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATCGAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG.........................................................................................................TGCCAGAAAATGGGGAATCCCCTATGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTTGACCAG.....................................................................................................TCAATTCGAGCGTTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCTATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTAGCTTATGCATTAAAAAGTGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATTTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTATATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAATACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAAGGGACTTGGACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAATCCGGGAAGATGACT-A--ACTTAGCTATATTAGCTCATGGATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCAAGAGAATTCTACTTGAACACTGAAGAGTTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGTGCCTATTTAAGTTATCCTGAATTATGTAGTGAG---A-ACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392135" ref_strand="+" ref_description="SGN-E392135 [TUS-24-J8]">
      <seq>ccatggccggcgtcgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaattctattttcaagtcaattccaatcggcagctcttcaataacagagtatctctcactacgcgaatccctaatgcctccattcggtgcttcgcttccacctctggtccgactagcaaaatcctcgttcaaaatcccatagtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatctatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaaatacaatgttgctgtgaaatgctctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatgcaattattaatgggcccggaaagctcaaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48770" stop="51573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49070" g_stop="49288" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="263" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="373" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="411" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="489" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="543" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51273" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="639" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E392135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49070" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGG</genome_strand>
        <mrna_strand>CCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................ATACAATGTTGCTGTGAAATGCTCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247765" ref_strand="+" ref_description="SGN-E247765 [cLEF-42-P17]">
      <seq>catggccggcgtcgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaattctattttcaagtcaattccaatcggcagctcttcaataacagagtatctctcactacgcgaatccctaatgcctccattcggtgcttcgcttccacctctggtccgactagcaaaatcctcgttcaaaatcccatagtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatctatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaaatacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48771" stop="51383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49071" g_stop="49288" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="262" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="372" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="410" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="488" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51083" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="527" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E247765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49071" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTC</genome_strand>
        <mrna_strand>CATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................ATACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557644" ref_strand="+" ref_description="SGN-E557644 [16476]">
      <seq>ctggtccgactagcaaaattgtcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgacgaccaagttactgttgaaagtgctgaggcaaccctgaagtacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatgcaattattaatgggcccggaaagctcaaaatggtttttgtgccacgaaaatggggaatcccctatgtgagctgggatgtttatgattttaacaggtcccgggtattgcacttgccatgtacaaatgttgacccaggtcaaattcggagcgtttgctgaatcatcaatggtccatgggcatttcaaagaaatgggctcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48938" stop="51937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49238" g_stop="49288" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="95" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="205" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="243" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="321" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="375" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="477" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51385" g_stop="51473" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="574" r_length="97" r_score="0.787"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="0.76"/>
            <acceptor a_prob="0.935" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51575" g_stop="51632" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="635" r_length="61" r_score="0.793"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E557644" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49238" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51279"/>
          <exon e_start="51385" e_stop="51473"/>
          <exon e_start="51575" e_stop="51632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTGGTGAGCTAGTTGATTTCAGTCTGTATTTATTTTATGAGGCAAAACATACACATACGAAGCATACTCATGCCAATACTCAACTTGTTTGTTGATTTTTATTTTCAGTGCC-GGAAAATGGGGAATCCCCTACG-GAGCT-GGATGTTTATGATTTTAA-AGGT-CCGGGTATTGCACTTGCCATGTAC-AATGTCGA-CCA-GGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTC-AATTC-GAGCATTTGCTGAATCATCAAT-GTCAATGGCATTTTCAAAGAAATGGCCTC</genome_strand>
        <mrna_strand>CTGGTCCGACTAGCAAAATTGTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGACGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................GTACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG.........................................................................................................TGCCACGAAAATGGGGAATCCCCTATGTGAGCTGGGATGTTTATGATTTTAACAGGTCCCGGGTATTGCACTTGCCATGTACAAATGTTGACCCAGG.....................................................................................................TCAAATTCGGAGCGTTTGCTGAATCATCAATGGTCCATGGGCATTTCAAAGAAATGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348028" ref_strand="+" ref_description="SGN-E348028 [cTOF-31-O5]">
      <seq>cacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatgcaattattaatgggcccggaaagctcaaaatggtttttgtgccggaaaatggggaatcccctacggagctggatgtttatgattttaaaggtccgggtattgcacttgccatgtacaatgtcgaccagtcaattcgagcatttgctgaatcatcaatgtcaatggcattttcaaagaaatggcctctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactcaatatggtatgagcatagactgatagatgacatggtcgcttatgtgttaaaaagcgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatctgctcgctcaaggatttggttctctgggcctcatgacttctgtattggtatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="50193" stop="52737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50515" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="77" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51178" g_stop="51279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="179" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51385" g_stop="51473" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="268" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51575" g_stop="51678" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="372" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="557" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="592" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52355" g_stop="52437" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="675" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E348028" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51279"/>
          <exon e_start="51385" e_stop="51473"/>
          <exon e_start="51575" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTGGTGAGCTAGTTGATTTCAGTCTGTATTTATTTTATGAGGCAAAACATACACATACGAAGCATACTCATGCCAATACTCAACTTGTTTGTTGATTTTTATTTTCAGTGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAGGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCA</genome_strand>
        <mrna_strand>CACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG.........................................................................................................TGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG.....................................................................................................TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG..................................................................................GTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346176" ref_strand="+" ref_description="SGN-E346176 [cTOF-34-O17]">
      <seq>acaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatgcaattattaatgggcccggaaagctcaaaatggtttttgtgccggaaaatggggaatcccctacggagctggatgtttatgattttaaaggtccgggtattgcacttgccatgtacaatgtcgaccagtcaattcgagcatttgctgaatcatcaatgtcaatggcattttcaaagaaatggcctctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactcaatatggtatgagcatagactgatagatgacatggtcgcttatgtgttaaaaagcgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatctgctcgctcaaggatttggttctctgggcctcatgacttctgtattggtatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="50194" stop="52710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50494" g_stop="50515" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="76" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51178" g_stop="51279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="178" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51385" g_stop="51473" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51575" g_stop="51678" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="371" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="440" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="556" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="591" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52355" g_stop="52410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="647" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E346176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50494" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51279"/>
          <exon e_start="51385" e_stop="51473"/>
          <exon e_start="51575" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTGGTGAGCTAGTTGATTTCAGTCTGTATTTATTTTATGAGGCAAAACATACACATACGAAGCATACTCATGCCAATACTCAACTTGTTTGTTGATTTTTATTTTCAGTGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAGGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAG</genome_strand>
        <mrna_strand>ACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG.........................................................................................................TGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG.....................................................................................................TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG..................................................................................GTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276626" ref_strand="+" ref_description="SGN-E276626 [cLEN-17-P4]">
      <seq>ggagctggatgtttatgattttaaaggtccgggtattgcacttgccatgtacaatgtcgaccagtcaattcgagcatttgctgaatcatcaatgtcaatggcattttcaaagaaatggcctctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactcaatatggtatgagcatagactgatagatgacatggtcgcttatgtgttaaaaagcgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatctgctcgctcaaggatttggttctctgggcctcatgacttctgtattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaagggacttggacataaggctcagcttgatgggaatcaaaagttgttggaatttgttcacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="51110" stop="53761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51410" g_stop="51473" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51575" g_stop="51678" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="168" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="237" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="353" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="388" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="531" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53414" g_stop="53461" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="579" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E276626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51410" e_stop="51473"/>
          <exon e_start="51575" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAGGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCT</genome_strand>
        <mrna_strand>GGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG.....................................................................................................TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAAGGGACTTGGACATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604905" ref_strand="+" ref_description="SGN-E604905 [56922]">
      <seq>tgctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactctatatggtatgagcatagactgatagatgacatggtagcttatgcattaaaaagtgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatttgctcgctcaaggatttggttctctgggcctcatgacttctatattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaagggacttggacatagggctcagcttgatgggaatcaaaagttgttggaatttgttcacaccctttgaagctttcttgcattggggacataggaatccggggaagatgactaaggacttaggtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="51332" stop="53821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51630" g_stop="51678" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="118" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="234" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="269" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="412" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53414" g_stop="53521" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="524" r_length="112" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E604905" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51630" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCC-TTGAAGC-TTCTTGCATT-GGGACAATAGAGTCC-GGGAAGATGACTAAGGACTTAGCTATATT</genome_strand>
        <mrna_strand>TGCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCTATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTAGCTTATGCATTAAAAAGTGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATTTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTATATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAAGGGACTTGGACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTTGAAGCTTTCTTGCATTGGGGACATAGGAATCCGGGGAAGATGACTAAGGACTTAGGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392134" ref_strand="+" ref_description="SGN-E392134 [TUS-24-J8](-)">
      <seq>catagactgatagatgacatggtcgcttatgtgtaaaaaagcgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatctgctcgctcaaggatttggttctctgggcctcatgacttctgtattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaggggacttggacatagggctcagcttgatgggaatcaaaagttgttggaatttgttcacacccttgaagcttcttgcattgggacaatagagtccgggaagatgactaaggacttagctatattagctcacggacccaaggtgtcaagagaattctacttgaacactgaagaatttattgatgctgtagcacagaaacttcaagagaagcttcatgcctcggcgcctatttaagttgtactggattatgtagtgagaacatacatgtatgagctgaagaagatcatgagcagcatcctttcactgttaacataactctactcacactgcccgttgagacattctttactctagtttttgtagttgttcaggtacaagataacaggttgttgagtggtcccttcatactgatctacaatgggttgtgtatattattgtctcgttttatttaggatccttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="51688" stop="54614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51988" g_stop="52096" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="144" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="287" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53414" g_stop="53536" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="410" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53988" g_stop="54321" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="744" r_length="334" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E392134" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51988" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53536"/>
          <exon e_start="53988" e_stop="54321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAAGTAAGTGATGGTTTCCTGCTTCAGTGTCATCTGTACGGCATATATCATCCTGCTCTTTTTCTTTACTCCACACTTGGGATTTCTGATATCTCCTCTAACTGTCTGTCAACCCTTGCCCTACTCCTGGGTAAGGACAGAGTCCTCCTCCTCTTGGTATTTGCTACTCAAAATACCATGTATTTCGAGGTGCAAAAGATGTCCCTTACACCAATTTTATTTATTTTTTAATAAAGTGAACAATAAATTCTATAGCCTAAGCCACCTTGAATAATTATACTAAGAACTTTTCACCTTCTTACTGATAAATTCTTTATTATGAAAAATGTTTTTGACACAAAAACTTGATTCAGTTAGCAAGATAAACCAAATGAAGAGACGTTAACATGAATAGTCTGCGACTTCTCTCTTAATTTCAGTGAAACTCAGTATTTGAGTAATTATACTTTTGCAGGGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTTCAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCATAAAAATCCATTT</genome_strand>
        <mrna_strand>CATAGACTGATAGATGACATGGTCGCTTATGTGTAAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTACAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459439" ref_strand="+" ref_description="SGN-E459439 [cPRO-27-J24]">
      <seq>tgatagatgacatggtagcttatgcattaaaaagtgagggtggatatgtttgggcatgcaagaactatgatggagatgtccatagtgatttgctcgctcaaggatttggttctttgggcctcatgacttctgtattgttatcttctgatggcaagacattaaaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagggttgcttccatttttgcatggacaaggggacttggacatatggctcagcttgatgggaatcaaaagttgttggaatttgttcacacccttgaagcttcttgcattgggacaatagagtccgggaagatgactaaagacttagctatattagctcatggacccaaggagtcaagagaattctacttgaacactgaagaatttattgatgctgtatcacagaaacttcaagagaagcttcatgcctcggtgcctatttaagttatcctggattatgtactgagaacatgtatgagctgaagaagatcatgagcagcatccttttcacagtgaacataaccctatgcacttcccgttgacattctttactctagtatttgtagtcgttcagctatgagatatcaggtggctgagtgttccatttgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="51695" stop="54557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51995" g_stop="52096" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="137" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="280" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53414" g_stop="53536" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="403" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53988" g_stop="54257" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="666" r_length="263" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E459439" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51995" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53536"/>
          <exon e_start="53988" e_stop="54257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAAGTAAGTGATGGTTTCCTGCTTCAGTGTCATCTGTACGGCATATATCATCCTGCTCTTTTTCTTTACTCCACACTTGGGATTTCTGATATCTCCTCTAACTGTCTGTCAACCCTTGCCCTACTCCTGGGTAAGGACAGAGTCCTCCTCCTCTTGGTATTTGCTACTCAAAATACCATGTATTTCGAGGTGCAAAAGATGTCCCTTACACCAATTTTATTTATTTTTTAATAAAGTGAACAATAAATTCTATAGCCTAAGCCACCTTGAATAATTATACTAAGAACTTTTCACCTTCTTACTGATAAATTCTTTATTATGAAAAATGTTTTTGACACAAAAACTTGATTCAGTTAGCAAGATAAACCAAATGAAGAGACGTTAACATGAATAGTCTGCGACTTCTCTCTTAATTTCAGTGAAACTCAGTATTTGAGTAATTATACTTTTGCAGGGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCC-TTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTG</genome_strand>
        <mrna_strand>TGATAGATGACATGGTAGCTTATGCATTAAAAAGTGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCATAGTGATTTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTTTGGGCCTCATGACTTCTGTATTG..................................................................................TTATCTTCTGATGGCAAGACATTAAAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGGGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAAGACTTAGCTATATTAGCTCATGGACCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTATCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGTGCCTATTTAAGTTATCCTGGATTATGTACTGAG---A-ACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTTCACAGTGAACATAACCCTA-T-GCACTTCCCGTT--GACATTCTTTACTCTAGTATTTGTAGTCGTTCAGCTATGAGATATCAGGTGGCTGAGTGTTCCATTTGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604004" ref_strand="-" ref_description="SGN-E604004 [67194]">
      <seq>agtgatttgctcgctcaaggatttggttctctgggcctcatgacttctatattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaagggacttggacatagggctcagcttgatgggaatcaaaagttgttggaatttgttcacacccttgaagcttcttgcattgggacaatagaatccgggaagatgactaaggacttagctatattagctcatggacccaaggtgtcaagagaattctacttgaacactgaagagtttattgatgctgtagcacagaaacttcaagagaagcttcatgcctcggtgcctatttaagttatcctgaattatgtagtgagaacatgtatgagctgaagaagatcatgagcagcatccttttcacagtgaacataaccctatgcacttcccgttgacattctttactctagtttttgtagtcgttcagatacgagatagcaggtggctgagtgttccatttgtactgctcctcaatgggttgtgtatattgtctcgtttgaattaggatccttcataaaaatccatttttcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="51936" stop="58273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52078" g_stop="52096" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="54" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="197" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53414" g_stop="53536" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="320" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53988" g_stop="54326" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="649" r_length="329" r_score="0.891"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54327" i_stop="54611" i_length="285">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54612" g_stop="54644" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="682" r_length="33" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E604004" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604004" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52078" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53536"/>
          <exon e_start="53988" e_stop="54326"/>
          <exon e_start="54612" e_stop="54644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAAGTAAGTGATGGTTTCCTGCTTCAGTGTCATCTGTACGGCATATATCATCCTGCTCTTTTTCTTTACTCCACACTTGGGATTTCTGATATCTCCTCTAACTGTCTGTCAACCCTTGCCCTACTCCTGGGTAAGGACAGAGTCCTCCTCCTCTTGGTATTTGCTACTCAAAATACCATGTATTTCGAGGTGCAAAAGATGTCCCTTACACCAATTTTATTTATTTTTTAATAAAGTGAACAATAAATTCTATAGCCTAAGCCACCTTGAATAATTATACTAAGAACTTTTCACCTTCTTACTGATAAATTCTTTATTATGAAAAATGTTTTTGACACAAAAACTTGATTCAGTTAGCAAGATAAACCAAATGAAGAGACGTTAACATGAATAGTCTGCGACTTCTCTCTTAATTTCAGTGAAACTCAGTATTTGAGTAATTATACTTTTGCAGGGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCC-TTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTTCAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCATAAAAATCCATTTTTCGAGTCATCTGTCAGCATTGTCATTGTGCTGGTGTTCCTGAAACACGCTTGGTTAACTGAGGTTGCTATTGCAAAAATCAGTCAAGCTCAACAAGAAGGAATAATTCTTTTGAATAGAAAGAATCATATGATTACTTCAATATATCGTCTTCTCGACTTTTTTTGGCTGTTAGCTCAGTTGTTAAAGCGCAATTAGGTTTTTGTCACTGTTACTTTGTTTGTTGCAAACTAAAGCGTCATTGACTCCAACAGTCTGGCAGTACTTGCACCTTGTCTCTTTTAATGAACTAATAAACACAACATAACTAGGAATTAGAATAT</genome_strand>
        <mrna_strand>AGTGATTTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTATATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAAGGGACTTGGACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAATCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCATGGACCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCAAGAGAATTCTACTTGAACACTGAAGAGTTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGTGCCTATTTAAGTTATCCTGAATTATGTAGTGAG---A-ACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTTCACAGTGAACATAACCCTA-T-GCACTTCCCGTT--GACATTCTTTACTCTAGTTTTTGTAGTCGTTCAGATACGAGATAGCAGGTGGCTGAGTGTTCCATTTGTACTGCTCCTCAATGGGTTGTG--TA-TATTGTCTCGTTTGAATTAGGATCCTTCATAAAAATCCATTTTTCGA.............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437385" ref_strand="+" ref_description="SGN-E437385 [cSTA-3-J3]">
      <seq>caacccaccaataccgaacaacaatacataccgtatacccccagaccccgcctcgtcttcttcctcgaacccaccagtgcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcggtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcattcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75052" stop="77861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75352" g_stop="75510" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="76885" i_length="1375">
            <donor d_prob="0.986" d_score="0.79"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76886" g_stop="76891" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="170" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76892" i_stop="77158" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77561" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="573" r_length="403" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E437385" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75352" e_stop="75510"/>
          <exon e_start="76886" e_stop="76891"/>
          <exon e_start="77159" e_stop="77561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCACCAATA-CGAACAACAATACATTACGTATA-CCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATC-G-GGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGC</genome_strand>
        <mrna_strand>CAACCCACCAATACCGAACAACAATACATACCGTATACCCCCAGACCCCGCCTCGTCTTCTTCCTCGAACCCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCTGTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCGGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCATTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569740" ref_strand="+" ref_description="SGN-E569740 [14218]">
      <seq>aatacgaacaacaatacatacggtataccccagacccgggctcgccttcttcctcggaagccaccagtgcgaaactcagcaagcccagaccccggcgtctattcgctcttcgtacagtattccgggcttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccaggcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaagggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctgggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaaggggctgttgcctccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75061" stop="77885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75361" g_stop="75510" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="76885" i_length="1375">
            <donor d_prob="0.986" d_score="0.77"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76886" g_stop="76891" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="161" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76892" i_stop="77158" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77585" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="592" r_length="431" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E569740" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75361" e_stop="75510"/>
          <exon e_start="76886" e_stop="76891"/>
          <exon e_start="77159" e_stop="77585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTC-GAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCC-GC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATC-G-GGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCA-GCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAA-GGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCT-GGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAA-GGGCTGTTGCCCCCACTG</genome_strand>
        <mrna_strand>AATACGAACAACAATACATACGGTATACCCCAGACCCGGGCTCGCCTTCTTCCTCGGAAGCCACCAGTGCGAAACTCAGCAAGCCCAGACCCCGGCGTCTATTCGCTCTTCGTACAGTATTCCGGGCTTCATCGTCGGAAGAATCTGTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGGCTGTTGCCTCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617116" ref_strand="+" ref_description="SGN-E617116 [90590]">
      <seq>gcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatgggagatttggtcattgtgtatgagaggcacgacacaatgaaaagcagtgaaaggtcagtgaggattggggttctgcaaaaatcgttttgggggctttaaagcatttctgaattggataggtaaaccttttgggtccaagttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaaagggttccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaacctgtggctgtgccattccttctgctggcaaaatgtttgaaaccagatgggggtattgtgctccttctctcccatgcattgaaccaagtaccaacgctcatgttggaagttctcaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75128" stop="79046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75428" g_stop="75510" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="75760" i_length="250">
            <donor d_prob="0.986" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75761" g_stop="75776" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="97" r_length="14" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75777" i_stop="77158" i_length="1382">
            <donor d_prob="0.196" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="579" r_length="482" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78511" g_stop="78711" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="787" r_length="208" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E617116" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75428" e_stop="75510"/>
          <exon e_start="75761" e_stop="75776"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGAT-GGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATG-AAAGCAGTGAAA-GTCAGTGAGGA-TGGGGTTCTGC-AGAATCGTTTT-GGTGCTTTTAAGCA-TTCTGAA-TGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCG-AGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTC-AACCT-TGGCT-TGTCATTCCTTCTGCTGGCAAAATG-TTGAAACCAGAT-GGGGTATTGTGCTCCTTCTCT-CCATGCATTGA</genome_strand>
        <mrna_strand>GCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCAATC-TGT..........................................................................................................................................................................................................................................................AGCATCG--GCATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAAGCAGTGAAAGGTCAGTGAGGATTGGGGTTCTGCAAAAATCGTTTTGGGGGCTTTAAAGCATTTCTGAATTGGATAGGTAAACCTTTTGGGTCCAA-GTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAAGGGTTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAAACCTGTGGCTGTGCCATTCCTTCTGCTGGCAAAATGTTTGAAACCAGATGGGGGTATTGTGCTCCTTCTCTCCCATGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454378" ref_strand="+" ref_description="SGN-E454378 [cSTS-23-G17]">
      <seq>gcgaaacccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaaaggttccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75128" stop="78889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75428" g_stop="75510" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="75760" i_length="250">
            <donor d_prob="0.986" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75761" g_stop="75776" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="97" r_length="14" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75777" i_stop="77158" i_length="1382">
            <donor d_prob="0.196" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="572" r_length="475" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78511" g_stop="78589" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="651" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E454378" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75428" e_stop="75510"/>
          <exon e_start="75761" e_stop="75776"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGAT</genome_strand>
        <mrna_strand>GCGAAACCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCAATC-TGT..........................................................................................................................................................................................................................................................AGCATCG--GCATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAAGGTTCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449642" ref_strand="+" ref_description="SGN-E449642 [cSTS-7-I1]">
      <seq>gaaaacccagcaagcccagaccccgcttctattcgctcttcgtacagtattccggccttcatcgtcggaagaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgaattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgttagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatgtttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtangagtaagagatatacagggcgaagggttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75131" stop="78887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75429" g_stop="75510" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="76885" i_length="1375">
            <donor d_prob="0.986" d_score="0.79"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76886" g_stop="76891" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="91" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76892" i_stop="77158" i_length="267">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="568" r_length="477" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78511" g_stop="78587" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="645" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E449642" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75429" e_stop="75510"/>
          <exon e_start="76886" e_stop="76891"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATC-G-GGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATG-ATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTG</genome_strand>
        <mrna_strand>GAAAACCCAGCAAGCCCAGACCCCGCTTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCTGTAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCT...........................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGAATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGTTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATGTTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTANGAGTAAGAGATATACAGGGCGAAGGGTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618808" ref_strand="+" ref_description="SGN-E618808 [69490]">
      <seq>taagcccagcaagcccagaccccgcgtctattcgctcttcgtacagtattccggccttcatcgtcggaagaatcaatctgtagcatcggcatctgtaattaagattcaaccattctaaatgattcttccgattgacccagcaaataaattatcgtttaagcgctttattaaagatggagatttggtcattgtgtatgagaggcacgacacaatgaaagcagtgaaggtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaacgcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacaacttcgcttgcaagggctgttgcctccactggccatatttatacctttgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgaagggttccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaccttggcttgccaattccttctgctggcaaaatgttgaaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacaacggctcaatgtgaaggctctcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75131" stop="79043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75430" g_stop="75510" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="75760" i_length="250">
            <donor d_prob="0.986" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75761" g_stop="75776" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="94" r_length="13" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75777" i_stop="77158" i_length="1382">
            <donor d_prob="0.196" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="570" r_length="476" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78511" g_stop="78745" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="810" r_length="240" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E618808" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75430" e_stop="75510"/>
          <exon e_start="75761" e_stop="75776"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCAGCAAGCCCAGACCCCGC-TCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTC-ATTCCTTCTGCTGGCAAAATGTTG-AAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGC-GCTC-ATGTGAA-GCACTCAAATCA</genome_strand>
        <mrna_strand>TAAGCCCAGCAAGCCCAGACCCCGCGTCTATTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGAAGAATCAATC-TGT..........................................................................................................................................................................................................................................................AGCATCG--GCATCT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTAAGATTCAACCATTCTAAATGATTCTTCCGATTGACCCAGCAAATAAATTATCGTTTAAGCGCTTTATTAAAGATGGAGATTTGGTCATTGTGTATGAGAGGCACGACACAATGAAAGCAGTGAAGGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACGCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACAACTTCGCTTGCAAGGGCTGTTGCCTCCACTGGCCATATTTATACCTTTGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAAGGGTTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGCCAATTCCTTCTGCTGGCAAAATGTTGAAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAACGGCTCAATGTGAAGGCTCTCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270804" ref_strand="+" ref_description="SGN-E270804 [cLEM-6-I17]">
      <seq>aaacccagcaagcccagaccccgctctactcgctcttcgtacagtattccggccttcatcgtcggtagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcaaataaattatcgtttaagcgttttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacgacttcgcttgcaagggctgttgcccccactggccatgtttataccttcgatttccatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75131" stop="77915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75431" g_stop="75510" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77159" g_stop="77615" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="536" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E270804" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75431" e_stop="75510"/>
          <exon e_start="77159" e_stop="77615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAAC</genome_strand>
        <mrna_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATCGG-CATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370701" ref_strand="+" ref_description="SGN-E370701 [TUS-28-F2]">
      <seq>aaacccagcacgcccagaccccgctctactcgctcttcgtacagcattccggccttcatcgacggcagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcacataaattatcgtgtaagcgtcttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggggcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccacattctttatatagctgatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75131" stop="77778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75431" g_stop="75510" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77159" g_stop="77478" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="399" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E370701" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75431" e_stop="75510"/>
          <exon e_start="77159" e_stop="77478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAG</genome_strand>
        <mrna_strand>AAACCCAGCACGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGCATTCCGGCCTTCATCGACGGCAGCATC-GGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCACATAAATTATCGTGTAAGCGTCTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGGGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCACATTCTTTATATAGCTGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746610" ref_strand="+" ref_description="SGN-E746610 [GI|47104140]">
      <seq>aacccagcaagcccagaccccgctctactcgctcttcgtacagtattccggccttcatcgtcggtagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcaaataaattatcgtttaagcgttttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacgacttcgcttgcaagggctgttgcccccactggccatgtttataccttcgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgagggattccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaccttggcttgtcattccttctgctggcaaaatgttgaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacagcgctcatgtgaagcactcaaatcacagtttacagatataagaacatttgaagtacttcttcgcacctatgaagttagacaaaagatactagagagctgcccagtaaatgaaggagattctattgagcgtcctccacggaagaggaggcagggttctgctgaaggaagcaatgggactgaatgctcctcttctcctgcggtggtgattaggccttctggtgaggcaagaggtcatacaggctatttgacatttgccagactcaaatgttttgtgtaatgtgttttgatgaatatccagttcttgtggtcgagtacactgttcgttctttagatgttgtgcttatttttcttcttgattctacaattagatatcagacaattttgtcttgagatttaacaaaaaggaaaagaatcgcttctattcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75132" stop="79542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75432" g_stop="75510" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="554" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78511" g_stop="78755" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="799" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78851" g_stop="79244" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="1193" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1194" polyA_stop="1204"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E746610" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1194</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75432" e_stop="75510"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78755"/>
          <exon e_start="78851" e_stop="79244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAGGTAAGTTATTTTCCTGGAATCTTGGTCTCATTCAGTTTAAAACACTGCTATAGGAACTACAGACTCTCATGTGGCAAGTGTTTTTGATTTCGTAGATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</genome_strand>
        <mrna_strand>AACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATC-GGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG...............................................................................................ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370700" ref_strand="+" ref_description="SGN-E370700 [TUS-28-F2](-)">
      <seq>cctcaaccatggcttgtcattccttctgctggcaaaatgttgaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacagcgctcatgtaaagcactcaaatcacagtttacacatataagaacgtttacaggacttcttcgcacctatgaagttagacaaaagatactagagagctgcccagtaaatgaaggagattttattgagcgtcctccacggaagaggaggcagggttttgctgaaggaagcaatgggactgaatgctcctcttctcctgcggtggtgattaggccttctggtgaggcaagaggtcatacaggctatttgacatttgccagactcaaatgttttgtgtaatgtgttttgatgaatatccagttcttgtggtcgagtacactggtcgttctttagatgttgtgcttatttttcttcttgattctacaattagatatcagacaattttgtcttgagatttaacaaaaaggaaaagaatcgctaaaattcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="78329" stop="79532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78629" g_stop="78755" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.473" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78851" g_stop="79244" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="521" r_length="394" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E370700" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78629" e_stop="78755"/>
          <exon e_start="78851" e_stop="79244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAGGTAAGTTATTTTCCTGGAATCTTGGTCTCATTCAGTTTAAAACACTGCTATAGGAACTACAGACTCTCATGTGGCAAGTGTTTTTGATTTCGTAGATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</genome_strand>
        <mrna_strand>CCTCAACCATGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTAAAGCACTCAAATCACAGTTTACAC...............................................................................................ATATAAGAACGTTTACAGGACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTTTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTTTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGGTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTAAAATTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738586" ref_strand="+" ref_description="SGN-E738586 [LC14AH07]">
      <seq>ggttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcaattgaatttccagtttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttngtggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggctttcaatctgactaaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82654" stop="85350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82954" g_stop="83556" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83557" i_stop="84224" i_length="668">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84225" g_stop="84390" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="769" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84716" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="855" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85007" g_stop="85050" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="899" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E738586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82954" e_stop="83556"/>
          <exon e_start="84225" e_stop="84390"/>
          <exon e_start="84631" e_stop="84716"/>
          <exon e_start="85007" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAAT</genome_strand>
        <mrna_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTNGTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTTCAATCTGACTAACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736628" ref_strand="+" ref_description="SGN-E736628 [LC06CB03]">
      <seq>ggttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcaattgaatttccagtttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82654" stop="84998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82954" g_stop="83556" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83557" i_stop="84224" i_length="668">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84225" g_stop="84390" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="769" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84698" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="837" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E736628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82954" e_stop="83556"/>
          <exon e_start="84225" e_stop="84390"/>
          <exon e_start="84631" e_stop="84698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGAC</genome_strand>
        <mrna_strand>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348124" ref_strand="+" ref_description="SGN-E348124 [cTOF-27-C1]">
      <seq>ttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctntatgtggggatttcgtcttcatccgatacaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82656" stop="84576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82956" g_stop="83567" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84276" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="650" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E348124" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82956" e_stop="83567"/>
          <exon e_start="84238" e_stop="84276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</genome_strand>
        <mrna_strand>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTNTATGTGGGGATTTCGTCTTCATCCGATA-CAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271602" ref_strand="+" ref_description="SGN-E271602 [cLEM-23-F10]">
      <seq>tcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82663" stop="84557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82963" g_stop="83567" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84257" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="625" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E271602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82963" e_stop="83567"/>
          <exon e_start="84238" e_stop="84257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACT</genome_strand>
        <mrna_strand>TCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346302" ref_strand="+" ref_description="SGN-E346302 [cTOF-23-B24]">
      <seq>gtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaagttactctttctcctctccgcttcttcatgtgttntatttttattggtattttgaaaattcagtattttcctttctatcctgctttgattgctgntattgtgcatacatctttgatcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82680" stop="83988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82980" g_stop="83688" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E346302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82980" e_stop="83688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTAC</genome_strand>
        <mrna_strand>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTNTATTTTTATTGGTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGNTATTGTGCATACATCTTTGATCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476027" ref_strand="+" ref_description="SGN-E476027 [cSTB-43-G19]">
      <seq>cctacctgctgccaatataaacagcagatatatgtataattgaatgtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaacgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctgtagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82707" stop="83700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83017" g_stop="83400" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="416" r_length="385" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E476027" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83017" e_stop="83400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAA</genome_strand>
        <mrna_strand>ATGTATAATTGAATGTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAACGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTGTAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414425" ref_strand="+" ref_description="SGN-E414425 [STM-19-D1]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctgtagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctntatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaaatgttttaacgaacatcagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82732" stop="84604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83031" g_stop="83567" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84304" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="606" r_length="68" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E414425" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83031" e_stop="83567"/>
          <exon e_start="84238" e_stop="84304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGT-AATGTTCTAACGAACATCAGTCTTG</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTGTAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTNTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAAATGTTTTAACGAACATCAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472569" ref_strand="+" ref_description="SGN-E472569 [cSTB-29-O17]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82732" stop="84574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83031" g_stop="83567" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84274" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="575" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E472569" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83031" e_stop="83567"/>
          <exon e_start="84238" e_stop="84274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACAT</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473825" ref_strand="+" ref_description="SGN-E473825 [cSTB-33-L12]">
      <seq>gtccaatggaagaatgtcaaccatcaatgtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82732" stop="83601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83031" g_stop="83301" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E473825" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83031" e_stop="83301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATC</genome_strand>
        <mrna_strand>GTCCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456172" ref_strand="+" ref_description="SGN-E456172 [cSTS-28-B18]">
      <seq>gtcaaccatcaatggtcgatataagctgattcgaactagatttagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcaccccattgggtaatgttttaacgaacatcagtcttgggagagttagcagtttccttcactcacacaatcaaagccatggaaccatttttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttgggattgtatcttctctggttcccattgttggntggagtagcattagcatcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82746" stop="84997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83046" g_stop="83567" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84390" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="679" r_length="155" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84697" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="748" r_length="69" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E456172" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83046" e_stop="83567"/>
          <exon e_start="84238" e_stop="84390"/>
          <exon e_start="84631" e_stop="84697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCATCAAT-GTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCA-CACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAG-TAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTT-GGATTGTATCTTCTCTGGTTCCCGTTGTTGG-TGGAGTAGCATTAGCATCAATGA</genome_strand>
        <mrna_strand>GTCAACCATCAATGGTCGATATAAGCTGATTCGAACTAGATTTAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACCCCATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGGATTGTATCTTCTCTGGTTCCCATTGTTGGNTGGAGTAGCATTAGCATCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468646" ref_strand="+" ref_description="SGN-E468646 [cSTB-5-O8]">
      <seq>aaccatcaatgtccatataagctgattcgaactacatatagctctcaacaaaaaaaaaatgggaacctctacattttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcaacattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgttaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccagcgactgttacggcctcacaatttggctgtgggactttgctaatactctatatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactatctgcaattcacacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82799" stop="84576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83049" g_stop="83567" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84276" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="559" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E468646" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83049" e_stop="83567"/>
          <exon e_start="84238" e_stop="84276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAAC-CATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTG</genome_strand>
        <mrna_strand>AACCATCAATGTCCATATAAGCTGATTCGAACTACATATAGCTCTCAACAAAAAAAAAATGGGAACCTCTACATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAACATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTTAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCAGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTATATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTATCTGCAATTCACACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290782" ref_strand="+" ref_description="SGN-E290782 [cLET-10-E19]">
      <seq>tcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82793" stop="84686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83093" g_stop="83567" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84386" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="624" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E290782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83093" e_stop="83567"/>
          <exon e_start="84238" e_stop="84386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGC</genome_strand>
        <mrna_strand>TCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470534" ref_strand="+" ref_description="SGN-E470534 [cSTB-18-J9]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82820" stop="84658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83120" g_stop="83567" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84358" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="569" r_length="121" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E470534" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83120" e_stop="83567"/>
          <exon e_start="84238" e_stop="84358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCA</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470486" ref_strand="+" ref_description="SGN-E470486 [cSTB-18-M10]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctcaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82820" stop="84657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83120" g_stop="83567" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84357" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="568" r_length="120" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E470486" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83120" e_stop="83567"/>
          <exon e_start="84238" e_stop="84357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTC</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470415" ref_strand="+" ref_description="SGN-E470415 [cSTB-18-K21]">
      <seq>attttacacgtctcttcccacaccatttctaaagcctgaaaaaccttccaatcaaatctttattaccagtaataataaattcaactcagctcttcagcattatgctttgcataagccaaaaagttgttcgattcatagaactagtgttcctattctggtaaaaaattcatgtaaactggatctgttcaaagttagggctatagcagaaagtgcaggagaatctgaggctgtgaagcccaaggaagtgatacagactctgcaactgggcgcgatgtttggaatttggtaccttttgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82820" stop="83803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83120" g_stop="83503" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E470415" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83120" e_stop="83503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGAC</genome_strand>
        <mrna_strand>ATTTTACACGTCTCTTCCCACACCATTTCTAAAGCCTGAAAAACCTTCCAATCAAATCTTTATTACCAGTAATAATAAATTCAACTCAGCTCTTCAGCATTATGCTTTGCATAAGCCAAAAAGTTGTTCGATTCATAGAACTAGTGTTCCTATTCTGGTAAAAAATTCATGTAAACTGGATCTGTTCAAAGTTAGGGCTATAGCAGAAAGTGCAGGAGAATCTGAGGCTGTGAAGCCCAAGGAAGTGATACAGACTCTGCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285222" ref_strand="+" ref_description="SGN-E285222 [cLER-20-P9]">
      <seq>acatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82825" stop="84632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83125" g_stop="83567" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84332" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="538" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E285222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83125" e_stop="83567"/>
          <exon e_start="84238" e_stop="84332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACAC</genome_strand>
        <mrna_strand>ACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278178" ref_strand="+" ref_description="SGN-E278178 [cLER-9-M5]">
      <seq>cgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="83074" stop="85329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83374" g_stop="83567" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84390" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="347" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84716" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="433" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85007" g_stop="85029" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="456" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E278178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83374" e_stop="83567"/>
          <exon e_start="84238" e_stop="84390"/>
          <exon e_start="84631" e_stop="84716"/>
          <exon e_start="85007" e_stop="85029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGG</genome_strand>
        <mrna_strand>CGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469671" ref_strand="+" ref_description="SGN-E469671 [cSTB-13-J7]">
      <seq>tgaatatctgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgctaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcacactagctgcaattcacacattgggtaatgttttaacgaacatcagtcttgggagagtagcagtttccttcactcacacaatcaaagccatggaaccatttttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccattgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaatcaatcgcgtaatgtatttagcaaaaaattcatggataaagaggaggaggcattggacaatatcaatttgttctctacgatcacaatcatttcattcatccttttggtacctgttgccattttgatggaaggggtcaagcttactccatcctatctacaatatactgctgcaagccatggtttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="83113" stop="85776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83413" g_stop="83567" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84390" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="308" r_length="153" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84716" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="394" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="479" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="602" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85564" g_stop="85582" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="621" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E469671" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83413" e_stop="83567"/>
          <exon e_start="84238" e_stop="84390"/>
          <exon e_start="84631" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATG</genome_strand>
        <mrna_strand>TGAATATCTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGCTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCACACTAGCTGCAATTCACACATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCAGTTTCCTTCACTCACACAATCAAAGCCATGGAACCATTTTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCATTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAATCAATCGCGTAATGTATTTAGCAAAAAATTCATGGATAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTACGATCACAATCATTTCATTCATCCTTTTGGTACCTGTTGCCATTTTGATGGAAGGGGTCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGCCATGGTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690254" ref_strand="+" ref_description="SGN-E690254 [LH_Ea03A12]">
      <seq>catgtaaattgggtaatgttttaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttctgcgctgtttcttgcagagcggccatctccttggattgtgtcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccagtcgcgtaatgtatttagcaaaaaattcatggtcaaagaggaggaggcaatggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtctcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgtgtgacaagtgaagaaagtcgtcaaatcctgtagtcataatgctctgtaaagaaaaggtaaaccaaaaacaggaactcgtggattgggttcgagttataggaagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="83971" stop="86727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84264" g_stop="84390" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.732" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84631" g_stop="84716" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="296" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="419" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="497" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="627" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86246" g_stop="86427" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="809" r_length="182" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E690254" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84264" e_stop="84390"/>
          <exon e_start="84631" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGG</genome_strand>
        <mrna_strand>CATGTA-A-ATTGGGTAATGTTTTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCTGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTGTCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAGTCGCGTAATGTATTTAGCAAAAAATTCATGGTCAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCAATGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTCTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGTGTGACAAGTGAAGAAAGTCGTCAAATCCTGTAGTCATAATGCTCTGTAAAGAAAAGGTAAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376887" ref_strand="+" ref_description="SGN-E376887 [TUS-19-H3]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84357" stop="86751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84657" g_stop="84716" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86246" g_stop="86451" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="682" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E376887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84657" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAG</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235541" ref_strand="+" ref_description="SGN-E235541 [cLED-11-P11]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84357" stop="86698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84657" g_stop="84716" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86246" g_stop="86398" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="629" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E235541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84657" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTG</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243541" ref_strand="+" ref_description="SGN-E243541 [cLED-34-A19]">
      <seq>tctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84357" stop="86670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84657" g_stop="84716" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="346" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="476" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86246" g_stop="86370" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="601" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E243541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84657" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGA</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231182" ref_strand="+" ref_description="SGN-E231182 [cLED-5-G8]">
      <seq>tctggttcccgttgtggggagtacattagcatcaatgacagaggcctttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaattgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84357" stop="85936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84657" g_stop="84716" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="140" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="262" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85564" g_stop="85636" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="335" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E231182" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84657" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACC</genome_strand>
        <mrna_strand>TCTGGTTCCCGTTG-TGG-GGAGTA-CATTAGCATCAATGACAGAGGCCT-TTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGT-ATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAA-TTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694094" ref_strand="+" ref_description="SGN-E694094 [LH_Ea03A12](-)">
      <seq>ttagcaaaaaattcatggtcaaagaggaggaggcaatggccaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtctcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgtgtgacaagtgaagaaagtcgtcaaatcctgtagtcataatgctctgtaaagaaaaggtaaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcagaatagtttgagaatccctgtcaataatggaaggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaatactaaaatcaactactaagcgcctatgactgaaacgtgaattattctgatctggctcaaaaagttttggaaattccatgtatcaaaaccaggataccctttaaaagagggaatataatttcaatcctctctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84763" stop="124578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85063" g_stop="85091" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="152" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="230" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="360" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86246" g_stop="86613" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="727" r_length="367" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86614" i_stop="87466" i_length="853">
            <donor d_prob="0.674" d_score="0.81"/>
            <acceptor a_prob="0.000" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87467" g_stop="87555" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="815" r_length="88" r_score="0.506"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E694094" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85063" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86613"/>
          <exon e_start="87467" e_stop="87555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCA-AGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAG-GCCTATGACTGAAAC-TGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTTATCGTTTGATCATTGTCGATCAGTCCTTTGTTCATACAATAATACCAAGGTCTTAATATGAAAACCATTAATCTACTATTTATTTGCGTTCTTCATGAATACTTTGACTTGAGTTATCCCTTCCATACTAATAGTGAATAGTTTTATAGAAAACCTGTATACCTCCGGGGGAGGAGTAAATTCTGCTTTCCCTACATGGAAGGAGTAAAAGTAATGCATTAACTAGAGAAATTTGCTCAACACTTAGAAGTGGGCTGATTCCATTAAACAAAGTTTGACGGTAAAATACTTTACATTTACATCCGTCAAAAACTTCCCATTTGCAGATTTTCAGCTATCTATTTCCAGTAATACGCTAAAAGCTTCTTCTATCCGAGAACACTGTTTGCCAAAACATGTAGTGGTTAAAGTTTAACAAAAATGACCCCTTTTTCTTCCAGCATTTCCTACAACACATCAAAAATCAACACAGGCTCTCCTTTACCTTCTTACTCCTCCCAATTGTTAGCACGGGGTCCATCGCCAGATTTCCCATCACCTTGGGATCTTTCTTTTTCCCAGTCCTTTCGGGAATCACCAGCTGATGATCTAGTGAAGCCCATCATGGCTTCATGGAAACTGCCACCTACTGGAACTTGAATACGAGTCCGCTCAGATCTTTCAGCACTACGGCTACGACTTCGCTCCCTGCCTTTTCTGTCACCCCATCCAGAACCTCTATTAGGGCTTCTGCTCCTACTTCTATCACGTCTCTGTGAACCCTGCATCATAGTTTCATGGAAGCTTCGACCATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</genome_strand>
        <mrna_strand>TTAGCAAAAAATTCATGGTCAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCAATGGCCAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTCTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGTGTGACAAGTGAAGAAAGTCGTCAAATCCTGTAGTCATAATGCTCTGTAAAGAAAAGGTAAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAGAATAGTTTGAGAATCCCTGTCAATAATGG-A--A-GGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACTAAAATCAACTACTAAGCGCCTATGACTGAAACGTGAATTATTCTGATCTGGCTCAAAAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAATTCCATGTATCAAAACCAGGATACCCTTTAAAAGAGGGAATATAATTTCAATC-CTCTCTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200468" ref_strand="+" ref_description="SGN-E200468 [cLEB-8-N1]">
      <seq>gcacgaggatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="85075" stop="86716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85374" g_stop="85471" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="176" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="306" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86246" g_stop="86416" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="477" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E200468" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85374" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATA</genome_strand>
        <mrna_strand>GCACGAGGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376886" ref_strand="+" ref_description="SGN-E376886 [TUS-19-H3](-)">
      <seq>tcattcaacctttgggtaccttctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgagaatccctgtcaataatggaaggatggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaataccaaaatcaactactaaggcctatgactgaaactgaattattctgatctggcggaaaatcatgtattaaaacaggaaaccctttcatataggaatataatttcaatcctctcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="85094" stop="86965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85394" g_stop="85471" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="156" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="286" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86246" g_stop="86665" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="706" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E376886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85394" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTT</genome_strand>
        <mrna_strand>TCATTCAACCTTTGGGTACCTTCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217448" ref_strand="+" ref_description="SGN-E217448 [cLEL-21-P9](-)">
      <seq>atcttcttccaaaacaaccgtttcaccaattaactcccttgggactgctatggctctagcgggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaaaaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgagaatccctgtcaataatggaaggatggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaataccaaaatcaactactaaggcctatgactgaaactgaattattctgatctggcggaaaatcatgtattaaaacaggaaaccctttcatataggaatataatttcaatcctctcttcttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="85769" stop="105756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86069" g_stop="86108" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86246" g_stop="86675" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="471" r_length="430" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86676" i_stop="87543" i_length="868">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87544" g_stop="87561" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="489" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E217448" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86069" e_stop="86108"/>
          <exon e_start="86246" e_stop="86675"/>
          <exon e_start="87544" e_stop="87561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCC-AAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTTATCGTTTGATCATTGTCGATCAGTCCTTTGTTCATACAATAATACCAAGGTCTTAATATGAAAACCATTAATCTACTATTTATTTGCGTTCTTCATGAATACTTTGACTTGAGTTATCCCTTCCATACTAATAGTGAATAGTTTTATAGAAAACCTGTATACCTCCGGGGGAGGAGTAAATTCTGCTTTCCCTACATGGAAGGAGTAAAAGTAATGCATTAACTAGAGAAATTTGCTCAACACTTAGAAGTGGGCTGATTCCATTAAACAAAGTTTGACGGTAAAATACTTTACATTTACATCCGTCAAAAACTTCCCATTTGCAGATTTTCAGCTATCTATTTCCAGTAATACGCTAAAAGCTTCTTCTATCCGAGAACACTGTTTGCCAAAACATGTAGTGGTTAAAGTTTAACAAAAATGACCCCTTTTTCTTCCAGCATTTCCTACAACACATCAAAAATCAACACAGGCTCTCCTTTACCTTCTTACTCCTCCCAATTGTTAGCACGGGGTCCATCGCCAGATTTCCCATCACCTTGGGATCTTTCTTTTTCCCAGTCCTTTCGGGAATCACCAGCTGATGATCTAGTGAAGCCCATCATGGCTTCATGGAAACTGCCACCTACTGGAACTTGAATACGAGTCCGCTCAGATCTTTCAGCACTACGGCTACGACTTCGCTCCCTGCCTTTTCTGTCACCCCATCCAGAACCTCTATTAGGGCTTCTGCTCCTACTTCTATCACGTCTCTGTGAACCCTGCATCATAGTTTCATGGAAGCTTCGACCATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGAAAATAA</genome_strand>
        <mrna_strand>ATCTTCTTCCAAAACAACCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCGGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAAAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708795" ref_strand="+" ref_description="SGN-E708795 [FA36DB08]">
      <seq>cgtggtcaactatgattttccaactggtatagaggactatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattttttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggctaggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgccaatgggaattttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaaatcaccccacttctaagtgttgagcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="88263" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87964" g_stop="87593" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="86908" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="975" r_length="603" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="976" polyA_stop="997"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E708795" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>974</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87964" e_stop="87593"/>
          <exon e_start="87509" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGG-AATCAGCCCACTTCTAAGTGTTGAGCAA</genome_strand>
        <mrna_strand>CGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCCAATGGGAATTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAAATCACCCCACTTCTAAGTGTTGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745763" ref_strand="+" ref_description="SGN-E745763 [GI|47105107]">
      <seq>gagggagaacggacgggagacatcgtcggaggtgggaatcgtttgtatcagcttcttttatcgtcatcggaaagactttgtcagaggtaattggatactgaagcttgagatggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacccttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaatccagagaccaatactacccaatacgagaagcctgttgctactcctcatgtgggtgctgcacaacataaatcctctgtatctgtaagttcatcagttgagaggccttctcaaagtcaatgttctgaccatggtgacaacagaggtaccaatggtgccttgagcaaactttcctctggagagggtattcagactgcaagagcaaatgagctttcccgcgatgaaacatctgcgcctaaaggttatagtgcttcagctgccgcgagtgacatatctccagatgcctatcgccgtcagcatgaaatttctgtctcaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggtttccttcagagattttgagggagatacatcaagctgggtttcctgctccttccccaatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactgggtctggaaaaactctaggtttcttgcttcctggctttattcttctaaagcaacgtcggagtaatcctcaatcaggccctactattttggttctctcgccaacaagagaattagccacacagatacaagatgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatatggaggcgccccaaaaggccctcagctacgagatctggataggggagttgatattgttgttgctacccctggtcgattgaatgatattttggagatgagaagagttaggctggatcaagtttcttacttggtgttagatgaagcggatcgtatgctggacatgggattcgaacctcagataaggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatggcctaaggaggtccgtagaattgcagctgatctattggttaatccagttcaggttaacattgggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtcatatatggataaacaaaagcgtctagaccagatcttgagatcccaagagcctggatcaaaaatcattatcttctgttcaactaagaaaatgtgtgaccaacttgctcgcaatcttacacacccatttggagctgctgctattcatggtgataaatctcagggtgagagggatcatgtactgagccagttccgcactggcaagtcccccgttcttgttgcaactgatgttgctgctcggggcttggatgtcaaagatatcagggtggtggtcaactatgattttccaactggtatagaggactatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattttttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggctaggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatntgcaaatgggaagtttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaatcagcccacttctaagtgttgaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="97234" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96934" g_stop="96851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96850" i_stop="93313" i_length="3538">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93312" g_stop="92979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="418" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92004" g_stop="91882" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="541" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91195" g_stop="91127" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="610" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91126" i_stop="90614" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90613" g_stop="90344" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="880" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90343" i_stop="89673" i_length="671">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89672" g_stop="89322" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="1231" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89321" i_stop="89126" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89125" g_stop="88848" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1509" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88847" i_stop="87968" i_length="880">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87967" g_stop="87593" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1884" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="87509" g_stop="86912" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1885" r_stop="2482" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2483" polyA_stop="2499"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E745763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2482</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96934" e_stop="96851"/>
          <exon e_start="93312" e_stop="92979"/>
          <exon e_start="92004" e_stop="91882"/>
          <exon e_start="91195" e_stop="91127"/>
          <exon e_start="90613" e_stop="90344"/>
          <exon e_start="89672" e_stop="89322"/>
          <exon e_start="89125" e_stop="88848"/>
          <exon e_start="87967" e_stop="87593"/>
          <exon e_start="87509" e_stop="86912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAGGTATCATATCTCATTTATACTCGCGATGATTCAGATCTGAGTTGAACTTGCTAGGTTTGGTATTTGACCCCTGATATGTGTTGGTTAACCAGAATGCAGGGTTTTAGATGTTTTATTTTTTTGATTGTCTGGCCTCGATATTGTCGTTATTTTGAAGCTGAACTAGATAGGTTTTGCCTTGAGCTGAAGTTGTTTGGCATTTGAACCCTGTTATGTGTTAATAAATAAAAATTTAGGGTTTTAGATTTTTTTTATCTTTTTGATTGTTTGGCCTCGATGTTCTTGTCCTTTTGAAGTTGAACATGGTAGGTTTGGCCGAGAAGTTGAACTTGTTTGGCATTTGACCGCTGATATGTGTGATAAATAATAATGTAGGGTTTTAGATGGTTTTTAAAAATTGTTTGGCCCCGAAATTGTCATCCTTTGGAAGTTGAACTTGCTATGTTTGCCATTTGACACCTGCTATGTGTTAGTAAACGAGAATGTAGGGGTTTTAGAATGTTTCTTTTATTGTTTGGCCTTGAGTTGAACTTGTTTAGCATTTGACCTCTGCTGTGTGTTAAAAAATTAAAAATGTAGGGGTTTAGTTTTTTAAAATTGTTTGGCCTCGATGTTGTTGTCCTTTTGAAGTTGAACTTGATAGGTTTGACATTTGACCCCTCCTGTGTTTAATAAATAACCATGTAGGGTTTAGATAATTTTTCTTTCGATGTTTGGCCTTGAAATTGTCGTCCTTTTGAAGTTGAACTCGCTAGGTTTGGCATATGACCCCTGCTATGTGTTAATAAACAATAATGTAGGGTTTTAGATTGTTCTTATTTTAAAAATTATTTAGCCTCAATGTTATCGTCCCTTTGAAGTTGAACTTGATAGATCTGGCATTTGATCCCAGCTATGTGTCATTAAATAATAATGTAGAGTTTTAGATGATTTTTTAAGAAAATTGTTTGGCCTCGATGTTGTAGTCCTTTTGAAGTTGAACTTGCTTGGTTTGGCATTTGACCCCATTTACGTGTTAGTAAATGACAATGTAGGTTTTTAGATCGATTTATTTCATTGTTTGGCCTCAATGTTGTGGTTGTTTTGAAGTTGAAGTTACTAGGTTTGGCATTTTGACCCCTGCTACGTGTTTGTGAATGATGATGTAGGGTTTTAGATCATTCTTTTGTTTGTTTTAGGTTTTTGTGACTTTTTTTGTTATTGCTTTGTGTTCCAACAGTTCAAAAGCCTTTGAACTAGTGCAGTGTTGTGAAAAGCGCAGAAAAGAACGCTTAAAGCGCGTTTCAAAGCGAAGCGATACCAGTGCCCTTCTTTCTCCTGAGGCGATGCGATCTGAAAAAGGCGCTCGCTTCAGATAACGTTGCGAGAAGCGACACTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAGCGACAATTAGTTTTTTTTTTTAAAAAATTAGTTAAAAAAATCTGAAATATACAATATAACTTAATTTTTCTTTCATGACTCTTCTTTCGCTTCTTCTCTCTTCACGACCACGACTGAGACTGCGTCTCTCTTCACACATCGACTGCGACTGCATGTAAGTGTTAGCCGATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATACAATCTTCGCCTTTGTTTCATCTCTGTGAGTTTCTTTTCTCTTCAAGAAATGTACGAAGGAGAAAGTCTCACTTATGGTGATGTTTCTGTGGCAAGTGGTGTTGAGGAGAATATTTATAGTTTTAGGGGGAGTACTTTAAGGGGCAAGGAAAGAGGAGTTGGAGGTTCTAGTTCAACTCGAAACCTTGTTGATGAGCCTTCTGATGATGAAGAAGATGATGACCAAGTAGAACCCTTGGTTATGGCACTTGAAGAGTTTGAGGATCTTGTTGAAGAATAGGAGTTTGAGTCTTCGTGATTTAATTATGTTTTTATTTTTGCTTTATATGTTATGACTTATGAGTATTATTGACTATCTATTTTCTTTTAATCTAAGACTATATTACCTCTATTTAGTTATTTTTTTATTTTTATTTTTATACTAATTTCGCTTTTTTTTAAAAAAGCGTGCGCTTTGCTTCACGCTTCTCGCTTCTGTGAAGCAAGCCCTCGTCGCTTTTTTCCGCTTATCGCTTCCCAAAACACTGAACTAGTGCCACTTGCGTGAATATAATGCTTTTGTGCATGTTTGAGTTGAGAGTAGTCCACTTTCGTGTTATTGTAGTCAGTAGCGTATGCAAGATTTTTCAAAAGTGATGTTGACATTTAAAGAAGAGAACGGATTAGATGAAATAATGAAATTTTTTAACCTTAGGGTCTTAAATCTATATTGACTAATCAAGTTAAAAATTGGTTAAATAAATTTAATGTTTACAATTTATGCAAAAGCGGAGAGCTTGGTTGATGGGTTTTGATTTGATCCTTTAACAATTAAGCGCTTCAAATTAAAAGAATCACAGAATCACACGAATTCACTGAGTAGGAGGTTCAAAGTCGGGGAAAATGCAACATAAGTTATGAGCTTAACCAGGGACCATAGAGCACTGTGTGTTATCATTCAATAATATATGTTCACGTACTCTATTTTTTCAGGTTTTATATATATAAGAAATTTTTGATGAATCAGTGTCAGATGACACCCCTTGCCACAAGGTGCATCCAGCCTGTAGTCTCAAGGGAAAACGGCAGTCATGTTAATTTATTCCCATAGATAGTTAGTGTTCCTGCTCTCCGAGTGTTGTGTAATGGCCATCCATTTATTCAGTTTTACGTATTTGACCTCAAGTGTTTTGTTGTCTAGGGGGAGGGTAGCGTAATGGTCAGACCCTTTACCCTACGGTATTATTGGAGGATTGAATCACCATGGTAGCAAGGTCGGAAGGGGTCACAGTTGGTTGTCTGGGTTGGGTTTCTTTGGTTAGTAAGGGGGTTGGTATGCAAAACAATTGTGTGCTGCCTTTTGCTTTTATCAGTATAACTGTGCGAGGGGCACAGTTACTTGTGTTGCTTTGTCTCTGTTAAGAACATATCTACTACTCTTGAAGTAACATGTTCTCTTCCCTTGTGTAGTTCATCTTCTTCTCTCTTTTGCGCAGCCTTATTTAGCTGTTTTGGCTGTAGTACATTTTTAGTACTCCCTCTGTTTCAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAATAAAAGAAAGAAGACTTTTAATCTTGTGATTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTGATCTTGTGGTCTTAAACATGCCACGTGGAAATTTAAAGTTAAAGTGTTGCAAAAAAAAGAAATGCGTCATTCTTTTTGAAACAGACTAAAAAGAAAATAGGGTCATTTTCTCGAAACTGAGGGAGTTCCATCTTATAAACACTGTCAATCATTCAGGTGATGGAATATAACACATGAAAAATGTGATTCATGGATTTCTTTATAGTATTATTGCTTTGTTTAACTCTTATTCTCATTTCATGCTTTAAAGTCGTTTCGTCTTTTCTGGTGCCAGAGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAGGTATTACTGTAGTCCGTTATTTTGTTTTAATCTCTTTTGGAACATCTGTAGCGAAGAGTTTACTTATTCATAAAGGGTCAAGTGTTCTTCTGTTAATTTCAATGGCTGCTGGAGGTCCATTGCAGTACTCATACAATTTTTCCCTCTGTACCTTGACGCAGATGCGATATTTGCTCCAGTGTGGAGCTAAATGTCGTACGCTGTGCAACCCTCTTTTTGGTCTTCCTTGTATTTGGAATTCCCTTATTTGGTGGACCAAATTTTGAAGGGCTTTCTGAATCATCCTTGTTCATGGCTGGGACTGCTGTTGGTGGTGTTAGTCTGCCACATGGTTTGACATGAAGAAGAGGCTTCCTCCTGCTCTTGCTTGCATATGCAAGTGTTGGCTGCCTGCGTAAGGGGGATATGCTTCTTCTTGTGTTAGCCACTTAAAAAAAACGTAGAAATAATCTAGGTGTAACTTCTTAGCTTGTATAATTGCTGACAGAGGTTTTCCAACTTTTACATTTCCAGATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACGGTATGAATTGTTATTTGACTATGTTTTGTAAAAAGTTTGATTCCAGAAGTAGATTTATCTTTTGATTTCCAATTACTGATGCAGGGCTAACTAATGGTTTAATTGTAAAAACCAAAAGTTAGCTTGGTCTGTCACATTTTTTTGCTATACTCCTTTACCATAATTTTCCTGTTAAGTCTGATTCTAAAGATCTCATCTTTTCGAATAGTTGTCTGGCCAAAAGTGAAACTTAGAGGGTAATCATTGTGTTTCTCATTTTGTGGTATCAAACACATATCTGCTTAATCCTATGCAATCTCTTTAAACGGTTATATGCTTCTTTTTCGTCAAACATAATTTTTGTTAACGTAAATAACCATGCACGAAGATAATGTTGTGCACTATTACGAAAAGGGGAAGGCCCCATTTACATTACTTGACAAAAAAACGAATGATTTTATTAAAACCTTTACAGAAGTATACTATTTTACACCTTCCCGTAGAACAATCAACAAATGTTGACATGCTAATGTTCAGGTCAGATGAACCAAGTGAATGTGTGTTTTAATTTTTTTGAAAATTGGCAATGCTGTATGGTTTTTGGTTAGTGTCTATATAGAGGGGGGACCCAACAGGCCCTCTGCTTTGACAATTTTCTTGAGAATTGACAATGCTGTATGTTTTTTGGTTAGTGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAGGTGCATTTCTGTTCTGTTCTCTTTTCTTGGACCGTGCTCATTAAAAATGCCTAAGAGTCTCTCTCTCCTCTAAATTGGATTAGAGGACTGAGATGTCATGGTAGAATGTGCGTCCCTTATTATCCCTGAGCACCAAGGGAGAACCTGTACTTGACATAATGAGGTTACATCATGTTTAATTAATTGTCATGTGCAGTACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAGGTTGGTGGAACTAAGAATCTTATAGTGTGCTTGATTATTTGTGGGTCACGTTTAATTCTCTTTTAATGGCTAACTGAATTAAAGAATATATATGCCTTCAACTTTTTATGGAGCGAGCATTTGGACCGACATATATTCCTTGCATGCTCTTCCCATGTTATTTCCCGTTAATCGATGGGGTGCAAACAGGCGTGTGGGGGTGGAGTTGTGTTTCTGATTTTGTTTTGGGTACCATTTGGTGATTTTGGGAGAGTGTAGGCCAAAAGTTACAACTTTGTACCTTTCATGTGTGATGTCATGATTTAGTTTGCAATGTAGATGGATGAGTAAAGTTCACATGGTATCCTTTCAATAAGATCTACTCTCCTAAGCTCCTTTCTTTTTCCATTTAGCTTTTATTGTTTGTTTGGGTTTGTAACTATGTGACCACTGAAAGTGGAAGAGCTATTTGATGAGACTTCATCAGATGATTGTACAAGAAGGAACTAGATAGATTAGAGAGAAAAAAAGAACAGATAAGAAAAAATGATAAATAAATAAAGGAATTTTGGGTTAGGTTAGCATCCGAGTTTGGGGCGGTATGGCATGGTTTGACATCATGCTGGAATTTTGTGGTTTTGACATTTGAAATATGCTCGAGCAGAGGTACCTCCAGAAACATTTTCTCTACCTTCATAAGGTAGAGGTAAGGTCTATGTACACTCTACCCACCCATCCCCTACCAGACCCCATGTGGGATTTCACTGGGTTATGTTATTGTACAATTAAAATATTTATGCATTCTTATAAATACTCTTTAAAGAGTAGTTTCTCCTAATATTTTTGGTAGTGGGATTTCTCTTCTATATAAGTTAAACAATTGATGAAACATTTGTGGCAGGGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</genome_strand>
        <mrna_strand>GAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG....................................................................................................................................................................................................TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATYTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540459" ref_strand="+" ref_description="SGN-E540459 [TUS-60-L24](-)">
      <seq>atgatgctggttacggtggacgagatggagcaaggggtggttgggaagccccttcatctgaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctatgatgctcccgctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagctaagtcgtagccgtagtgctgaaagatctgagcggacttgtattcaagttccagtaggtggcagtttccaggaagccatgatgggcttccctagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctatcaattgggaggggtaagaaggtaaaggggagcccgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaacccctacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgcaaatgggaagtttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaatcagcccacttctaagtgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="87992" stop="86607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87692" g_stop="87593" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="86912" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="698" r_length="598" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="739"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E540459" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87692" e_stop="87593"/>
          <exon e_start="87509" e_stop="86912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</genome_strand>
        <mrna_strand>ATGATGCTGGTTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCTGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTATGATGCTCCCGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCTAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTTGTATTCAAGTTCCAGTAGGTGGCAGTTTCCAGGAAGCCATGATGGGCTTCCCTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTATCAATTGGGAGGGGTAAGAAGGTAAAGGGGAGCCCGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCCCTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540462" ref_strand="+" ref_description="SGN-E540462 [TUS-60-L24]">
      <seq>atgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaagggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgcaaatgggaagtgtttgacggatgttaatgtaaagtattttaccgtcaaactttggttaatgggatcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="87992" stop="86628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87692" g_stop="87593" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="86928" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="682" r_length="582" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E540462" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87692" e_stop="87593"/>
          <exon e_start="87509" e_stop="86928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCC</genome_strand>
        <mrna_strand>ATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAAGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTGTTTGACGGATGTTAATGTAAAGTATTTTACCGTCAAACTTTGGTTAATGGGATCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288762" ref_strand="+" ref_description="SGN-E288762 [cLES-17-G21]">
      <seq>tgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaagaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="87991" stop="86766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87691" g_stop="87593" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="87066" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="543" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E288762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87691" e_stop="87593"/>
          <exon e_start="87509" e_stop="87066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTT</genome_strand>
        <mrna_strand>TGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAAGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440529" ref_strand="+" ref_description="SGN-E440529 [cSTA-17-E16]">
      <seq>cttatttggtgttagatgaagcggatcgtatgctggacatgggattgggacctgagataaggaagattgtgaaggacgtgcctacgcgacggcagacactgatgtacacagcaacatggccaaaggaggtccgcaaaattgcagctgatctattggttaatccagttcaggttaacattgggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtcatatatggataaacaaaagcggctagaccagatcttgagatcccaagaacctggatcaaaaatcattatcttctgttcaacaaagaaaatgtgtgaccaacttgctcgcaatcttacacgcccatttggagctgctgcaattcatggtgataaatctcagggtgagagggatcatgtactgagccagttccgcactggcaagtcccccgttcttgttgccactgatgttgctgctcggggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="89842" stop="88563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89542" g_stop="89322" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89321" i_stop="89126" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89125" g_stop="88863" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="484" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E440529" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89542" e_stop="89322"/>
          <exon e_start="89125" e_stop="88863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAGGTGCATTTCTGTTCTGTTCTCTTTTCTTGGACCGTGCTCATTAAAAATGCCTAAGAGTCTCTCTCTCCTCTAAATTGGATTAGAGGACTGAGATGTCATGGTAGAATGTGCGTCCCTTATTATCCCTGAGCACCAAGGGAGAACCTGTACTTGACATAATGAGGTTACATCATGTTTAATTAATTGTCATGTGCAGTACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGA</genome_strand>
        <mrna_strand>CTTATTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTGGGACCTGAGATAAGGAAGATTGTGAAGGACGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCAAAGGAGGTCCGCAAAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG....................................................................................................................................................................................................TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGGCTAGACCAGATCTTGAGATCCCAAGAACCTGGATCAAAAATCATTATCTTCTGTTCAACAAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACGCCCATTTGGAGCTGCTGCAATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCCACTGATGTTGCTGCTCGGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571299" ref_strand="+" ref_description="SGN-E571299 [12333]">
      <seq>atactacccaatacgagaggcctgttgctacttctcatgtgggtgctgcacaacataaatcgtctgtatctgtaagttcatcagttgagaagccttctcaaagtgaatgtcctggaccgtggtgacaacagaggtaccaatggtgcattgagcaaactttcctctggagagggcattcagactgcaaaagtaagtgagctttcccgcgatgaaacatctgcgccaaaaggttatagtgctccagctgctgcaagtgacatatctccagatgcctatcgccgtcagcatgaaatttctgtcacaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggtttccttcggagattttgagggagatacatcaagctgggtttcctgctccttccccaatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactgggtctggaaaaactttgggtttcttgcttcctggcttttttcttctaaagcaacgtcggagtaatcctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="93457" stop="90146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93157" g_stop="92979" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92004" g_stop="91882" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="303" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91195" g_stop="91127" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91126" i_stop="90614" i_length="513">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90613" g_stop="90446" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="540" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E571299" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93157" e_stop="92979"/>
          <exon e_start="92004" e_stop="91882"/>
          <exon e_start="91195" e_stop="91127"/>
          <exon e_start="90613" e_stop="90446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCT-GACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAGGTATTACTGTAGTCCGTTATTTTGTTTTAATCTCTTTTGGAACATCTGTAGCGAAGAGTTTACTTATTCATAAAGGGTCAAGTGTTCTTCTGTTAATTTCAATGGCTGCTGGAGGTCCATTGCAGTACTCATACAATTTTTCCCTCTGTACCTTGACGCAGATGCGATATTTGCTCCAGTGTGGAGCTAAATGTCGTACGCTGTGCAACCCTCTTTTTGGTCTTCCTTGTATTTGGAATTCCCTTATTTGGTGGACCAAATTTTGAAGGGCTTTCTGAATCATCCTTGTTCATGGCTGGGACTGCTGTTGGTGGTGTTAGTCTGCCACATGGTTTGACATGAAGAAGAGGCTTCCTCCTGCTCTTGCTTGCATATGCAAGTGTTGGCTGCCTGCGTAAGGGGGATATGCTTCTTCTTGTGTTAGCCACTTAAAAAAAACGTAGAAATAATCTAGGTGTAACTTCTTAGCTTGTATAATTGCTGACAGAGGTTTTCCAACTTTTACATTTCCAGATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAA</genome_strand>
        <mrna_strand>ATACTACCCAATACGAGAGGCCTGTTGCTACTTCTCATGTGGGTGCTGCACAACATAAATCGTCTGTATCTGTAAGTTCATCAGTTGAGAAGCCTTCTCAAAGTGAATGTCCTGGACCGTGGTGACAACAGAGGTACCAATGGTGCATTGAGCAAACTTTCCTCTGGAGAGGGCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAAAGTAAGTGAGCTTTCCCGCGATGAAACATCTGCGCCAAAAGGTTATAGTGCTCCAGCTGCTGCAAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCGGAGATTTTGAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTTTGGGTTTCTTGCTTCCTGGCTTTTTTCTTCTAAAGCAACGTCGGAGTAATCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584084" ref_strand="+" ref_description="SGN-E584084 [9905]">
      <seq>ttctcaaagtgaatgtcctgaccgtggtgacaacagaggtaccaatggtgcattgagcaaactttcctctggagagggcattcagactgcaaaagtaagtgagctttcccgcgatgaaacatctgcgccaaaaggttatagtgctccatctgctgcaagtgacatatctccagatgtctatcgccggcagcatgaaatttctgtcacaggaggtgatgtgccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="93363" stop="90879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93063" g_stop="92979" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92004" g_stop="91882" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="208" r_length="123" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91195" g_stop="91179" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="225" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E584084" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93063" e_stop="92979"/>
          <exon e_start="92004" e_stop="91882"/>
          <exon e_start="91195" e_stop="91179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCC</genome_strand>
        <mrna_strand>TTCTCAAAGTGAATGTCCTGACCGTGGTGACAACAGAGGTACCAATGGTGCATTGAGCAAACTTTCCTCTGGAGAGGGCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAAAGTAAGTGAGCTTTCCCGCGATGAAACATCTGCGCCAAAAGGTTATAGTGCTCCATCTGCTGCAAGTGACATATCTCCAGATGTCTATCGCCGGCAGCATGAAATTTCTGTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300691" ref_strand="+" ref_description="SGN-E300691 [cLEW-8-C9]">
      <seq>tcactcataccttcgtatacttttatatataaattatttagcatagtgagtgggagggagaacggacgggagacatcgtcggaggtgggaatcgtttgtatcagcttcttttatcgtcatcggaaagactatgtcagaggtaattggatactgaagcttgagatggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacccttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttctggaatccagagaccaatactacccaatacgagaagcctgacgctactcctcatgtgggtgctgcacaacataaatcctctgcatctgtaagttcatcagttgagaggccttctcaaagtcaatgttctgaccatggtgacaacagaggtaccaatggtgcctagagcaaactttcctctggagagggtcttcagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="97287" stop="92679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96987" g_stop="96851" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96850" i_stop="93313" i_length="3538">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93312" g_stop="92980" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="470" r_length="333" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E300691" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96987" e_stop="96851"/>
          <exon e_start="93312" e_stop="92980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAGGTATCATATCTCATTTATACTCGCGATGATTCAGATCTGAGTTGAACTTGCTAGGTTTGGTATTTGACCCCTGATATGTGTTGGTTAACCAGAATGCAGGGTTTTAGATGTTTTATTTTTTTGATTGTCTGGCCTCGATATTGTCGTTATTTTGAAGCTGAACTAGATAGGTTTTGCCTTGAGCTGAAGTTGTTTGGCATTTGAACCCTGTTATGTGTTAATAAATAAAAATTTAGGGTTTTAGATTTTTTTTATCTTTTTGATTGTTTGGCCTCGATGTTCTTGTCCTTTTGAAGTTGAACATGGTAGGTTTGGCCGAGAAGTTGAACTTGTTTGGCATTTGACCGCTGATATGTGTGATAAATAATAATGTAGGGTTTTAGATGGTTTTTAAAAATTGTTTGGCCCCGAAATTGTCATCCTTTGGAAGTTGAACTTGCTATGTTTGCCATTTGACACCTGCTATGTGTTAGTAAACGAGAATGTAGGGGTTTTAGAATGTTTCTTTTATTGTTTGGCCTTGAGTTGAACTTGTTTAGCATTTGACCTCTGCTGTGTGTTAAAAAATTAAAAATGTAGGGGTTTAGTTTTTTAAAATTGTTTGGCCTCGATGTTGTTGTCCTTTTGAAGTTGAACTTGATAGGTTTGACATTTGACCCCTCCTGTGTTTAATAAATAACCATGTAGGGTTTAGATAATTTTTCTTTCGATGTTTGGCCTTGAAATTGTCGTCCTTTTGAAGTTGAACTCGCTAGGTTTGGCATATGACCCCTGCTATGTGTTAATAAACAATAATGTAGGGTTTTAGATTGTTCTTATTTTAAAAATTATTTAGCCTCAATGTTATCGTCCCTTTGAAGTTGAACTTGATAGATCTGGCATTTGATCCCAGCTATGTGTCATTAAATAATAATGTAGAGTTTTAGATGATTTTTTAAGAAAATTGTTTGGCCTCGATGTTGTAGTCCTTTTGAAGTTGAACTTGCTTGGTTTGGCATTTGACCCCATTTACGTGTTAGTAAATGACAATGTAGGTTTTTAGATCGATTTATTTCATTGTTTGGCCTCAATGTTGTGGTTGTTTTGAAGTTGAAGTTACTAGGTTTGGCATTTTGACCCCTGCTACGTGTTTGTGAATGATGATGTAGGGTTTTAGATCATTCTTTTGTTTGTTTTAGGTTTTTGTGACTTTTTTTGTTATTGCTTTGTGTTCCAACAGTTCAAAAGCCTTTGAACTAGTGCAGTGTTGTGAAAAGCGCAGAAAAGAACGCTTAAAGCGCGTTTCAAAGCGAAGCGATACCAGTGCCCTTCTTTCTCCTGAGGCGATGCGATCTGAAAAAGGCGCTCGCTTCAGATAACGTTGCGAGAAGCGACACTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAGCGACAATTAGTTTTTTTTTTTAAAAAATTAGTTAAAAAAATCTGAAATATACAATATAACTTAATTTTTCTTTCATGACTCTTCTTTCGCTTCTTCTCTCTTCACGACCACGACTGAGACTGCGTCTCTCTTCACACATCGACTGCGACTGCATGTAAGTGTTAGCCGATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATACAATCTTCGCCTTTGTTTCATCTCTGTGAGTTTCTTTTCTCTTCAAGAAATGTACGAAGGAGAAAGTCTCACTTATGGTGATGTTTCTGTGGCAAGTGGTGTTGAGGAGAATATTTATAGTTTTAGGGGGAGTACTTTAAGGGGCAAGGAAAGAGGAGTTGGAGGTTCTAGTTCAACTCGAAACCTTGTTGATGAGCCTTCTGATGATGAAGAAGATGATGACCAAGTAGAACCCTTGGTTATGGCACTTGAAGAGTTTGAGGATCTTGTTGAAGAATAGGAGTTTGAGTCTTCGTGATTTAATTATGTTTTTATTTTTGCTTTATATGTTATGACTTATGAGTATTATTGACTATCTATTTTCTTTTAATCTAAGACTATATTACCTCTATTTAGTTATTTTTTTATTTTTATTTTTATACTAATTTCGCTTTTTTTTAAAAAAGCGTGCGCTTTGCTTCACGCTTCTCGCTTCTGTGAAGCAAGCCCTCGTCGCTTTTTTCCGCTTATCGCTTCCCAAAACACTGAACTAGTGCCACTTGCGTGAATATAATGCTTTTGTGCATGTTTGAGTTGAGAGTAGTCCACTTTCGTGTTATTGTAGTCAGTAGCGTATGCAAGATTTTTCAAAAGTGATGTTGACATTTAAAGAAGAGAACGGATTAGATGAAATAATGAAATTTTTTAACCTTAGGGTCTTAAATCTATATTGACTAATCAAGTTAAAAATTGGTTAAATAAATTTAATGTTTACAATTTATGCAAAAGCGGAGAGCTTGGTTGATGGGTTTTGATTTGATCCTTTAACAATTAAGCGCTTCAAATTAAAAGAATCACAGAATCACACGAATTCACTGAGTAGGAGGTTCAAAGTCGGGGAAAATGCAACATAAGTTATGAGCTTAACCAGGGACCATAGAGCACTGTGTGTTATCATTCAATAATATATGTTCACGTACTCTATTTTTTCAGGTTTTATATATATAAGAAATTTTTGATGAATCAGTGTCAGATGACACCCCTTGCCACAAGGTGCATCCAGCCTGTAGTCTCAAGGGAAAACGGCAGTCATGTTAATTTATTCCCATAGATAGTTAGTGTTCCTGCTCTCCGAGTGTTGTGTAATGGCCATCCATTTATTCAGTTTTACGTATTTGACCTCAAGTGTTTTGTTGTCTAGGGGGAGGGTAGCGTAATGGTCAGACCCTTTACCCTACGGTATTATTGGAGGATTGAATCACCATGGTAGCAAGGTCGGAAGGGGTCACAGTTGGTTGTCTGGGTTGGGTTTCTTTGGTTAGTAAGGGGGTTGGTATGCAAAACAATTGTGTGCTGCCTTTTGCTTTTATCAGTATAACTGTGCGAGGGGCACAGTTACTTGTGTTGCTTTGTCTCTGTTAAGAACATATCTACTACTCTTGAAGTAACATGTTCTCTTCCCTTGTGTAGTTCATCTTCTTCTCTCTTTTGCGCAGCCTTATTTAGCTGTTTTGGCTGTAGTACATTTTTAGTACTCCCTCTGTTTCAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAATAAAAGAAAGAAGACTTTTAATCTTGTGATTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTGATCTTGTGGTCTTAAACATGCCACGTGGAAATTTAAAGTTAAAGTGTTGCAAAAAAAAGAAATGCGTCATTCTTTTTGAAACAGACTAAAAAGAAAATAGGGTCATTTTCTCGAAACTGAGGGAGTTCCATCTTATAAACACTGTCAATCATTCAGGTGATGGAATATAACACATGAAAAATGTGATTCATGGATTTCTTTATAGTATTATTGCTTTGTTTAACTCTTATTCTCATTTCATGCTTTAAAGTCGTTTCGTCTTTTCTGGTGCCAGAGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCA</genome_strand>
        <mrna_strand>TCACTCATACCTTCGTATACTTTTATATATAAATTATTTAGCATAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTATGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTCTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGACGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGCATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTAGAGCAAACTTTCCTCTGGAGAGGGTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395514" ref_strand="+" ref_description="SGN-E395514 [TUS-43-C2](-)">
      <seq>aggggggttttacaaaatttttaaacaaagtgttaccagaacatgctaaaaagcagtgtcccttacttggagtttagtgtgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatttccattagtttattatataccactttttcgccaattatgtaatcagctgattccccccgtactttacttaattatttgtaaatagtaaggtattacgggatttaccttattccttatggacaattttatttttgtatgcacattttagtttgcattttttactgcattttggtcgattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="100694" stop="24981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100394" g_stop="100061" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100060" i_stop="99793" i_length="268">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.097" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99792" g_stop="99757" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="371" r_length="36" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E395514" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100394" e_stop="100061"/>
          <exon e_start="99792" e_stop="99757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCGTCTT-CAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCTATTACACTTTGTTTGGATCATTGTTACCCATTGCTTTATAATGTATTCTATTGTATTATATTGTATGGTAGATACAATGTTTGGTTAGATTGTATTGTTTGTTGTTGCTTAATAACATTTTAATTGTTTGGTTTGATTGTTTCGTACAATATTGTAATTTATAAATTTACTAAAATATCCTTAATTATTCTAGGGTAGTAGGTTTGACTAGATTTAAATAAATAAGGTAAAGGGTAAAATAGTATTTTGAAATATTATGTGAAGATATAATTAAAAAAAGAAATTAAGTAAAAACAAAAA</genome_strand>
        <mrna_strand>AGGGGGGTTTTACAAAATTTTTAAACAAAGTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTTTAGTGTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATTTCCATTAGTTTATTATATACCACTTTTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTTTACTTAATTATTTGTAAATAGTAAGGTATTACGGGATTTACCTTATTCCTTATGGACAATTTTATTTTTGTATGCACATTTTAGTTTGCATTTTTTACTGCATTTTGGTCGA............................................................................................................................................................................................................................................................................TTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299681" ref_strand="+" ref_description="SGN-E299681 [cLEW-1-O13](-)">
      <seq>tcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgcaaaaaaagggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="101362" stop="99795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101062" g_stop="100984" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="163" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100608" g_stop="100506" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="266" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100401" g_stop="100096" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="572" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E299681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101062" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100506"/>
          <exon e_start="100401" e_stop="100096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCAC</genome_strand>
        <mrna_strand>TCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554606" ref_strand="+" ref_description="SGN-E554606 [cTSC-4-N16]">
      <seq>gtagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="101506" stop="99798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101206" g_stop="101152" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="151" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="235" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100608" g_stop="100506" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="338" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100401" g_stop="100098" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="642" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E554606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101206" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100506"/>
          <exon e_start="100401" e_stop="100098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</genome_strand>
        <mrna_strand>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554293" ref_strand="+" ref_description="SGN-E554293 [cTSC-3-N16]">
      <seq>gagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="101487" stop="99798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101187" g_stop="101152" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="132" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="216" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100608" g_stop="100506" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="319" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100401" g_stop="100098" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="623" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E554293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101187" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100506"/>
          <exon e_start="100401" e_stop="100098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</genome_strand>
        <mrna_strand>GAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244869" ref_strand="-" ref_description="SGN-E244869 [cLEF-2-J1]">
      <seq>agttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="101318" stop="99814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101018" g_stop="100984" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100608" g_stop="100506" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="222" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100401" g_stop="100115" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="509" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="527"/>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E244869" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101018" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100506"/>
          <exon e_start="100401" e_stop="100115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACA</genome_strand>
        <mrna_strand>AGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319853" ref_strand="+" ref_description="SGN-E319853 [cTOB-12-P16]">
      <seq>ggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="102609" stop="100247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102309" g_stop="102285" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="82" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="274" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="370" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="454" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100608" g_stop="100547" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="516" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E319853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102309" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAA</genome_strand>
        <mrna_strand>GGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346980" ref_strand="+" ref_description="SGN-E346980 [cTOF-25-K21]">
      <seq>agacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctncgtgaccctaatgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103723" stop="100256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103423" g_stop="103361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="135" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="192" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="333" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="384" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="480" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="564" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100608" g_stop="100556" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="617" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E346980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103423" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCG</genome_strand>
        <mrna_strand>AGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTNCGTGACCCTAATGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368632" ref_strand="+" ref_description="SGN-E368632 [TUS-22-B24]">
      <seq>tttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagcttttggtcacgcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103776" stop="100487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103476" g_stop="103361" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="188" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="386" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="437" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="617" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100608" g_stop="100582" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="644" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E368632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103476" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTT</genome_strand>
        <mrna_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTTTTGGTCACGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204867" ref_strand="+" ref_description="SGN-E204867 [cLEC-14-P11]">
      <seq>ttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcacctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="102639" stop="100547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102339" g_stop="102285" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="112" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="253" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="304" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="400" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100878" g_stop="100847" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="432" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E204867" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102339" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGT</genome_strand>
        <mrna_strand>TTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCACCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232839" ref_strand="+" ref_description="SGN-E232839 [cLED-8-I9]">
      <seq>tttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103776" stop="100682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103476" g_stop="103361" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="188" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="386" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="437" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E232839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103476" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG</genome_strand>
        <mrna_strand>TTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572969" ref_strand="+" ref_description="SGN-E572969 [32206]">
      <seq>aaaaangtctgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatatttggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggtcagcccctctttcctggtgagagtggtgtcgatcagctcgtcgaaataatcaaggttcttggaacaccaacgcgtgaagaaatcaagtgtatgaatccaaattacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103897" stop="100726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103597" g_stop="103361" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="308" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="365" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="506" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="557" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101079" g_stop="101026" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="611" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E572969" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103597" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="101026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACC</genome_strand>
        <mrna_strand>AAAAANGTC-TGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTTGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGTCAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTCGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACGCGTGAAGAAATCAAGTGTATGAATCCAAATTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395542" ref_strand="+" ref_description="SGN-E395542 [TUS-43-E18]">
      <seq>cttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaattacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="102640" stop="100727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102340" g_stop="102285" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="113" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="254" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="305" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101079" g_stop="101027" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E395542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102340" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="101027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACAC</genome_strand>
        <mrna_strand>CTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCC-AATTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244639" ref_strand="+" ref_description="SGN-E244639 [cLED-38-A11]">
      <seq>aagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103870" stop="100739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103570" g_stop="103361" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="282" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="339" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="480" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101079" g_stop="101039" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E244639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103570" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="101039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAA</genome_strand>
        <mrna_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727179" ref_strand="+" ref_description="SGN-E727179 [LA13DH01]">
      <seq>gaaataaatgcaatgaagatcaacgatgacaaagaaagaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtctcatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcgggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggataaaccgtggcaataaaaaaggtcttgcaggacaatagatacaagaatcgggaattgcacactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacaaaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacatacaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttaaagctttggcttacatacatgggataggagtctgccacagggacatcatacctcagaatttactggtcgacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggactgtgggttgtgtcctagctgaactgcttcttgaacaccccctctttcctggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="106480" stop="100885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106180" g_stop="106139" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="135" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="196" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="469" r_length="273" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="541" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="598" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="739" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101202" g_stop="101185" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E727179" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106180" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGC-GGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAG</genome_strand>
        <mrna_strand>GAAATAAATGCAATGAAGATCAACGATGACAAAGAAAGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCTCATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGATAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAATAGATACAAGAATCGGGAATTGCACACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAAAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACATACAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAAAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCATACCTCAGAATTTACTG........................................................................GTCGACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGACTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGAACAC..................................................................................................CCCCTCTTTCCTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263724" ref_strand="+" ref_description="SGN-E263724 [cLEG-60-O24]">
      <seq>gtgacaactattgggggcaaaaatggtgagcctaagcagaccattagttacatggccgagcgtgttgttggacagggttcctttggaattgtgtttcaggccaaatgccttgaaactggagaaactgtggcaataaaaaaagttctacaggataagcgatacaagaatcgggaattgcaaacaatacgccttcttgaccatcctaatgttgtttcactgagacactgcttcttttcaaccacagaaaaggatgagctttatcttaatttggttcttgaatatgtacctgagactgtctaccgtgtgttgagacattacagcaaagcaaaccaacggatgccaatgatttatgtcaagctctatacatatcagattttcagagctttggcttacatacatgggataggagtctgccacagggacatcaagcctcagaatttactggtcaacccacatactcaccagcttaagctctgtgattttgggagtgcaaaagttctggtcaaaggcgagccaaatatttcatacatttgttctcgttactatcgtgcgcctgaacttatatttggagcaacagaatacacatttgcaattgacatttggtctgtgggttgtgtccttgctgaactgcttcttgggcagcccctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="104102" stop="101001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="372" r_length="273" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="444" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="501" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="0.88"/>
            <acceptor a_prob="0.947" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="642" r_length="141" r_score="0.894"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101202" g_stop="101195" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="650" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E263724" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTT</genome_strand>
        <mrna_strand>ACCATTAGTTACATGGCCGAGCGTGTTGTTGGACAGGGTTCCTTTGGAATTGTGTTTCAG....................................................................................................GCCAAATGCCTTGAAACTGGAGAAACTGTGGCAATAAAAAAAGTTCTACAGGATAAGCGATACAAGAATCGGGAATTGCAAACAATACGCCTTCTTGACCATCCTAATGTTGTTTCACTGAGACACTGCTTCTTTTCAACCACAGAAAAGGATGAGCTTTATCTTAATTTGGTTCTTGAATATGTACCTGAGACTGTCTACCGTGTGTTGAGACATTACAGCAAAGCAAACCAACGGATGCCAATGATTTATGTCAAGCTCTATACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAGCCTCAGAATTTACTG........................................................................GTCAACCCACATACTCACCAGCTTAAGCTCTGTGATTTTGGGAGTGCAAAAGTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAATATTTCATACATTTGTTCTCGTTACTATCGTGCGCCTGAACTTATATTTGGAGCAACAGAATACACATTTGCAATTGACATTTGGTCTGTGGGTTGTGTCCTTGCTGAACTGCTTCTTGGGCAG..................................................................................................CCCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252168" ref_strand="+" ref_description="SGN-E252168 [cLEG-8-F7]">
      <seq>gaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagcttttgggggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccattgcaattgacatttggtctgtgggttgtgtcctagctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="106279" stop="101015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105979" g_stop="105958" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="355" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="0.889"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="488" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101441" g_stop="101315" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="615" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E252168" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105979" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGC-TTT---GGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAAC</genome_strand>
        <mrna_strand>GAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTTGGGGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCATTGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238589" ref_strand="+" ref_description="SGN-E238589 [cLED-17-D22]">
      <seq>aatttgtccctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103755" stop="101039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103455" g_stop="103361" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="167" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="224" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101339" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="327" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E238589" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103455" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGT</genome_strand>
        <mrna_strand>AATTTGTCCCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306199" ref_strand="+" ref_description="SGN-E306199 [cLEY-13-F9]">
      <seq>ttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="104085" stop="101041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103785" g_stop="103734" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="325" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="397" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="454" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101441" g_stop="101341" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="555" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E306199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103785" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTG</genome_strand>
        <mrna_strand>TTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237538" ref_strand="+" ref_description="SGN-E237538 [cLED-19-H3]">
      <seq>aagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103870" stop="101043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103570" g_stop="103361" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="282" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="339" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101441" g_stop="101343" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="438" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E237538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103570" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATT</genome_strand>
        <mrna_strand>AAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254778" ref_strand="+" ref_description="SGN-E254778 [cLEG-33-O7]">
      <seq>ccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="104096" stop="101061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="69" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="342" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101441" g_stop="101361" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="552" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E254778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTAC</genome_strand>
        <mrna_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474520" ref_strand="+" ref_description="SGN-E474520 [cSTB-36-F16]">
      <seq>cgaggtggaaatggaacctgaaaccaggtcacatcattgtgacaacctattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacataccatgggataggagtctgccacagggaccatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgccagaactaatatttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="106332" stop="101072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106033" g_stop="105958" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="138" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="411" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="542" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101441" g_stop="101372" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="612" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E474520" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106033" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGGGAATGGAAC-TGAAA-CAGGTCACATCATTGTGACGA-CTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATA-CATGGGATAGGAGTCTGCCACAGGGA-CATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAG</genome_strand>
        <mrna_strand>CGAGG-TGGAAATGGAACCTGAAACCAGGTCACATCATTGTGACAACCTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACCATGGGATAGGAGTCTGCCACAGGGACCATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCAGAACTAATATTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258097" ref_strand="+" ref_description="SGN-E258097 [cLEG-48-O24]">
      <seq>tcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="104102" stop="101110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="73" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="346" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101441" g_stop="101410" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="507" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E258097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTG</genome_strand>
        <mrna_strand>ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401566" ref_strand="+" ref_description="SGN-E401566 [PPC-4-J11]">
      <seq>gagctctatctaaatttggttctcgaatttgtacctgaaactgtctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatgatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="103780" stop="101871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103480" g_stop="103361" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="192" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102212" g_stop="102171" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E401566" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103480" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGG</genome_strand>
        <mrna_strand>GAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213855" ref_strand="+" ref_description="SGN-E213855 [cLEC-76-N15]">
      <seq>agcattgcagaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107503" stop="102027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107203" g_stop="107058" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106263" i_length="795">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106262" g_stop="106139" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="269" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="362" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="422" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="695" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102356" g_stop="102327" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="725" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E213855" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107203" e_stop="107058"/>
          <exon e_start="106262" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGG</genome_strand>
        <mrna_strand>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316363" ref_strand="+" ref_description="SGN-E316363 [cTOA-25-I6]">
      <seq>tgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgntnagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107474" stop="103074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107174" g_stop="107058" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="317" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103374" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="730" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E316363" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107174" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACT</genome_strand>
        <mrna_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGNTNAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477847" ref_strand="+" ref_description="SGN-E477847 [cSTD-1-N20]">
      <seq>gaaagaagagcagtatcgcagaagtctataacctgaaaacttggccatacgccattttcacttccactttatttctttcgcgcttagggttttgctgtttcactcacaatttttcgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattgggggaaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgcnttcttttcgaccacagaanaggatgagctctatctaaatttggttctcgaatttgtacctgaaactgtctanccgtgtgttaagacattacagcaaagcaaaccaacggatgcctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107485" stop="103087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107214" g_stop="107058" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="351" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="444" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="504" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103387" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="753" r_length="249" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E477847" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107214" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGC-TTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTA-CCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTA</genome_strand>
        <mrna_strand>GAAAGAAGAGCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTTCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGAAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCNTTCTTTTCGACCACAGAANAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTGAAACTGTCTANCCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453533" ref_strand="+" ref_description="SGN-E453533 [cSTS-20-G6]">
      <seq>aaagtgagaaaaaggaaagaagagccagtatcgcagaagtctataacctgaaaacttggccatacgccattttcaccttccactttatttctttcgcgcttagggttttgctgtttcacccacaattttccgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgaacttcttgatcatcctaagtattgtttcactgaaacactgcttcttttcgaccacagaaaaggatgagctctatctaaatttggttctcgaatttgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107485" stop="103144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107228" g_stop="107058" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="367" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="460" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103444" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="712" r_length="192" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E453533" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107228" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAGAAAAATGAAAGAAGAG-CAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCA-CTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG-ACTTCTTGATCATCCT-AGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTG</genome_strand>
        <mrna_strand>AAAGTGAGAAAAAGGAAAGAAGAGCCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACCTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACCCACAATTTTCCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGAACTTCTTGATCATCCTAAGTATTGTTTCACTGAAACACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409345" ref_strand="+" ref_description="SGN-E409345 [PPI-13-H6]">
      <seq>agcatccaaagtgagaaaaaggaaagaagagcagtatcgcagaagtctataacctgaaaacttggccatacgccattttcacttccactttatttctttcgcgcttagggttttgctgtttcacccacaattttccgtcgcccatgcgagcaattcacttcaccgttgcaggttttgagaagctgataatctgtcatttaagtcgtaaccatttatcagtactataaggaagattgtttgtaattcagtgatatggcttctggcagtattatgtcttcagcagctggcaaacctattactgatgctatgcttattgacaacctacctaaagaaataaatgaaatgaagatcaatgatgacaaagaaggaaaggaaatggaagcaactgttgtggatggaaatggaactgaaacaggtcacatcattgtgacaactattgggggggaaaatggtcagccaaagcagaccataagttacatggcggagcgagttgttggacaggggtcctttggaattgtgttccaggccaaatgccttgaaaccggagaaactgtggcaatannaaaggtcttgcaggacaagagatacaagaatcgagaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaaacactgctttctttcgacacagaaaaggatgagctctatctaaatttggttctcgaatttgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107485" stop="103145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107237" g_stop="107058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="372" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="465" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="525" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103445" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="713" r_length="188" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E409345" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107237" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCCACAAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCT</genome_strand>
        <mrna_strand>AGCAT-C-CAAAGTGAGAAAAAGGAAAGAAGAGCAGTATCGCAGAAGTCTAT-------AACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTTCGCGCTTAGGGTTTTGCTGTTTCACCCACAATTTTCCGTCGCCCATGCGAGCAATTCACTTCACCGTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCTGATAATCTGTCATTTAAGTCGTAACCATTTATCAGTACTATAAGGAAGATTGTTTGTAATTCAGTGATATGGCTTCTGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGCTATGCTTATTGACAACCTACCTAAAGAAATAAATGAAATGAAGATCAATGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCAACTGTTGTGGATGGAAATGGAACTGAAACAGGTCACATCATTGTGACAACTATTGGGGGGGAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGAGTTGTTGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACCGGAGAAACTGTGGCAATANNAAAGGTCTTGCAGGACAAGAGATACAAGAATCGAGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAACACTGCTTTCTTTCGA-CACAGAAAAGGATGAGCTCTATCTAAATTTGGTTCTCGAATTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316343" ref_strand="+" ref_description="SGN-E316343 [cTOA-25-A6]">
      <seq>tgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaagtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttttctttcgacacagaaaaagatgagctttatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107474" stop="103167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107174" g_stop="107058" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="317" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103467" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="637" r_length="167" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E316343" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107174" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCT-TTTCGACCACAGAAAAGGATGAGCTTTATCTAAA</genome_strand>
        <mrna_strand>TGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAAGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTTTCTTTCGA-CACAGAAAAAGATGAGCTTTATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395515" ref_strand="+" ref_description="SGN-E395515 [TUS-43-C2]">
      <seq>cagaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctaatattgtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107496" stop="103215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107196" g_stop="107058" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="339" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="432" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="492" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103515" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="611" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E395515" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107196" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACT</genome_strand>
        <mrna_strand>CAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAATATTGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299838" ref_strand="+" ref_description="SGN-E299838 [cLEW-1-O23]">
      <seq>aaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagggacatggcttcgggcagtattatgtcttcagcagctgagcaaacctattactgatgttgagcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagatggacaggggtcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcgggacaagagatacaagaatcgggaattgcagactatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107471" stop="103245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107171" g_stop="107058" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="315" r_length="202" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="408" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103545" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="557" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E299838" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107171" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTG-GCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG</genome_strand>
        <mrna_strand>AAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGGGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGAGCAAACCTATTACTGATGTTGAGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGATGGACAGGGGTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCGGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300907" ref_strand="+" ref_description="SGN-E300907 [cLEW-8-N10]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107495" stop="103438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107195" g_stop="107058" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103738" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="487" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E300907" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107195" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTT</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204276" ref_strand="+" ref_description="SGN-E204276 [cLEC-13-J6]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107495" stop="103444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107195" g_stop="107058" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103744" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="481" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E204276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107195" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAAT</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210417" ref_strand="+" ref_description="SGN-E210417 [cLEC-35-C15]">
      <seq>agaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107495" stop="103466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107195" g_stop="107058" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="338" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103766" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="459" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E210417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107195" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAG</genome_strand>
        <mrna_strand>AGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747187" ref_strand="+" ref_description="SGN-E747187 [GI|11320949]">
      <seq>acgaaggacaaaattagtaatatttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtctttcaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggatttggcaaatcatgaatttactgggatctatgaaatcttctcagtatttgtatgatgaagcacaaaatgggattgccagcttttgctgaactttggtatatgccattaatttagacacttgtgctttgtgaaactagccaaaagtgtggcctctgaggtttatccttgtactgatactgctctgtttaggaatgatagggttaccacagaaatttgtatggaaaaagaactgttaagtacatttgatcaaatattgaacaccaagtttgtcgtttaacacttgggttgttgtagttcagtgtggagaaaaacaactcaagagaagttccataagttccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112042" stop="107992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111742" g_stop="111445" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="437" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="630" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="741" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="804" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108671" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="935" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108670" i_stop="108592" i_length="79">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108591" g_stop="108292" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1235" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E747187" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111742" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108671"/>
          <exon e_start="108591" e_stop="108292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</genome_strand>
        <mrna_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTTCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG...............................................................................TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707164" ref_strand="+" ref_description="SGN-E707164 [FA32AH12]">
      <seq>cactaattagtaatatttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112031" stop="108412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111736" g_stop="111445" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="430" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="623" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="734" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="797" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108712" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="887" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E707164" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111736" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTT</genome_strand>
        <mrna_strand>CACTAA-TTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721089" ref_strand="+" ref_description="SGN-E721089 [FC12DA04]">
      <seq>tcggccgaattggttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111993" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111707" g_stop="111445" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="261" r_length="260" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="400" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="593" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="704" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="767" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108782" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="787" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E721089" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111707" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGA</genome_strand>
        <mrna_strand>CGGCCGAATTG---GTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576865" ref_strand="+" ref_description="SGN-E576865 [60150]">
      <seq>ggcaatggctgccgcaatttgggcatcttcttcttcgttcgctcgctctctccggcctctcctctgttggaactcgtctctctcccctatcaacttcactcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattggctgtttacgctcaagccaggcgagttttatcttccaaaaccaaaggagatgaaatagctactcctgctgatttgagcttcgaggtgccattgaaaattgtagagtatccagacccgattctaagagcgaagaataagaggattgacaaatttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagctggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatatatggtgatgttgagagaccagactcagttaaggttgacgcactggcacattaatggtgcaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacaggcagttcttttctttgacaaaatgactgacgaagttttggacaccatccgtgaacaatttagtggccgctagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111974" stop="108590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111674" g_stop="111445" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="369" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="562" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="674" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="738" r_length="64" r_score="0.889"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108791" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="750" r_length="12" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E576865" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111674" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGG-ACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAA-AAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGG-CGCTAGAAAA</genome_strand>
        <mrna_strand>GGCAATGGCTGCCGCAATTTGGGCATCTTCTTCTTCGTTCGCTCGCTCTCTCCGGCCTCTCCTCTGTTGGAACTCGTCTCTCTCCCCTATCAACTTCACTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTGGCTGTTTACGCTCAAGCCAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCTACTC..............................................................................................CTGCTGATTTGAGCTTCGAGGTGCCATTGAAAATTGTAGAGTATCCAGACCCGATTCTAAGAGCGAAGAATAAGAGGATTGACAAATTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCTGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATATATGGTGATGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGACTCAGTTAAGGTTGACGCACTGGCACATTAATGGTGCAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCTTTTCTTTGACAAAATGACTGACGAAGTTTTGGACACCATCCGTGAACAATTTAGTG.........................................................................................GCCGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559107" ref_strand="+" ref_description="SGN-E559107 [18552]">
      <seq>aaaaggagtaatatttgcatctttggaggtgaaattgcccgttttgttgtgaagcaaatggcaatggctgccgcaatttgggcatcttcttcttcgttcgctcgctctctccggcctctcctctgttggaactcgtctctctcccctatcaacttcactcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattggctgtttacgctcaagccaggcgagttttatcttccaaaaccaaaggagatgaaatagctactcctgctgatttgagcttcgaggtgccattgaaaattgtagagtatccagacccgattctaagagcgaagaataagaggattgacaaatttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagctggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatatatggtgatggttgagagaacagactccgttaaggttgacgcactggacattaatgggtgcaagggtttgacataaagcttgtctgctccttccagcacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112033" stop="109111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111733" g_stop="111445" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="428" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="622" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109411" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="708" r_length="86" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E559107" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111733" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGAT-GTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAAT-GGTACAA-GGTTTGAGAT-AAGCTTGTCTGCT-CTTCCAGCACGAG</genome_strand>
        <mrna_strand>AAAAGGAGTAATATTTGCATCTTTGGAGGTGAAATTGCCCGTTTTGTTGTGAAGCAAATGGCAATGGCTGCCGCAATTTGGGCATCTTCTTCTTCGTTCGCTCGCTCTCTCCGGCCTCTCCTCTGTTGGAACTCGTCTCTCTCCCCTATCAACTTCACTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTGGCTGTTTACGCTCAAGCCAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCTACTC..............................................................................................CTGCTGATTTGAGCTTCGAGGTGCCATTGAAAATTGTAGAGTATCCAGACCCGATTCTAAGAGCGAAGAATAAGAGGATTGACAAATTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCTGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATATATGGTGATGGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAGACTCCGTTAAGGTTGACGCACTGGACATTAATGGGTGCAAGGGTTTGACATAAAGCTTGTCTGCTCCTTCCAGCACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284285" ref_strand="+" ref_description="SGN-E284285 [cLER-16-N5]">
      <seq>gcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaagttgacgcacaggacattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111961" stop="109153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111661" g_stop="111445" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="356" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="549" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109453" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="589" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E284285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111661" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATG</genome_strand>
        <mrna_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAAGTTGACGCACAGGACATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314261" ref_strand="+" ref_description="SGN-E314261 [cTOA-21-F8]">
      <seq>atggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcanccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111970" stop="110254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111670" g_stop="111445" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="365" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110554" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="533" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E314261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111670" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTT</genome_strand>
        <mrna_strand>ATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCANCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274706" ref_strand="+" ref_description="SGN-E274706 [cLEN-13-D7]">
      <seq>cgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111962" stop="110271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111662" g_stop="111445" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="357" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110571" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="508" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E274706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111662" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAA</genome_strand>
        <mrna_strand>CGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318750" ref_strand="+" ref_description="SGN-E318750 [cTOB-11-A19]">
      <seq>gctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaagtccacgtgtcagtagatattctaggaggattataccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111967" stop="110274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111667" g_stop="111445" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="362" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110574" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="511" r_length="149" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E318750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111667" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAA-TCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTAT</genome_strand>
        <mrna_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAAGTCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310477" ref_strand="+" ref_description="SGN-E310477 [cTOA-9-A9]">
      <seq>tgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcggggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111965" stop="110327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111665" g_stop="111445" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="360" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110627" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="455" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E310477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111665" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGA</genome_strand>
        <mrna_strand>TGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGGGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315010" ref_strand="+" ref_description="SGN-E315010 [cTOB-4-C20]">
      <seq>gctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagccttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagaggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111967" stop="110332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111667" g_stop="111445" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="362" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E315010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111667" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGA</genome_strand>
        <mrna_strand>GCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGCCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289883" ref_strand="+" ref_description="SGN-E289883 [cLET-9-A6]">
      <seq>ttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgactattttgacgctaatttgaagaagttaggtgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacatgttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111636" stop="110341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111336" g_stop="111212" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110721" g_stop="110641" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="206" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E289883" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111336" e_stop="111212"/>
          <exon e_start="110721" e_stop="110641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGG</genome_strand>
        <mrna_strand>TTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACTATTTTGACGCTAATTTGAAGAAGTTAGGTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACATGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277988" ref_strand="+" ref_description="SGN-E277988 [cLER-4-O22]">
      <seq>gcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaatgaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="111961" stop="110400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111661" g_stop="111445" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="356" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110700" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="378" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E277988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111661" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCT</genome_strand>
        <mrna_strand>GCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATGAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338085" ref_strand="+" ref_description="SGN-E338085 [cTOE-13-C3]">
      <seq>gcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112017" stop="110404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111717" g_stop="111445" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="412" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110704" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="430" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-E338085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111717" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCT</genome_strand>
        <mrna_strand>GCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622939" ref_strand="+" ref_description="SGN-E622939 [73312]">
      <seq>aaatactttttttcttcacaacccatccctcttctcttctttattatataaaaaaaaatggataaaagaacatgtgagtctcaagatgttgaagttaggaaaggtccttggactatggaggaagatttaattctcatcaattacattgctaatcatggtgaaggtgtttggaattcccttggctcgatccgctggtttgaagcgtactggaaaaagttgtagacttcgatggcttaattatctccgacctgatgttcggaggggaaatattacaccggaagaacaactgttgatcatggaactacatgccaagtggggaaaccggtggtcgaaaattgcaaagcatttacctggaagaacagataatgagataaaaaacttctggagaacaagaattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="120699" stop="123941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120997" g_stop="121188" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121263" g_stop="121392" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="324" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121393" i_stop="123563" i_length="2171">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123564" g_stop="123641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="402" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E622939" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120997" e_stop="121188"/>
          <exon e_start="121263" e_stop="121392"/>
          <exon e_start="123564" e_stop="123641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATAT-AAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCC-TCGCTCGATCCGCTGGTACTAATTGATCGTCATGTTTAGATTGGGGCTTAATTATGTTGTATATATTTAATTTTTTTCGTGTGTAATAGGTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAATTTACAACGTGTTTAATGTAACCTAAAGTTTGGATTTTTTATTTATTTATGATTTCTTATTGGGTGTCAAAAGTATTCTTCTTAATAATTAATTTTTTTTATTGAGGATTAACTCATTTTCCCTTCTTTTCTTCCCTAAAATTTGTTGAAATCCTTAGTTTTTTTCCATTCAAAAAATTAATCCGATCATAATATCAAATTTATAATGAATAGACCTAATCTTCTATTACTCCTATCATTTTTTATCTTACTTTTATTTTTAATTTGTTTCAAAAAGTCTCTGTTATTGTTATTTTTTTAACAAAATTTTAATTCTAAATTTTCGTATGATATTTTTAAGATCACAATATTTTAATATATTACACATGTCTTTAGTTTATAATACATAATTCAAAAAAAAAATCTTAAAGTAACATATTTAAACAAAATCAAAGAAAGAAAAATTAAAACGGATAGGGTATTTTTGTCCCAACATAATTATTATTTTTTTGTTTTACGGCTTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGTAATTGGAAATGAAAGAAGTATATTTTAAACTAAAATGTTATATATAACATGTAATTTGCCTATTTTTTTCAGGTGGATACTATGAATTCTTTTAAAAGGTTATAATATAGACATAAAATTCCAATAAAATTAATTATTATGATATACAGGTGGTCGAAAATTGCAAAACATTTACCTGGTAGAACAGATAATGAGATAAAGAACTTATGGAGGACAAGAATTCAAAA</genome_strand>
        <mrna_strand>AAATACTTTTTTTCTTCACAACCCATCCCTCTTCTCTTCTTTATTATATAAAAAAAAATGGATAAAAGAACATGTGAGTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAGGAAGATTTAATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTTGGCTCGATCCGCTG..........................................................................GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTCGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAAGAACAACTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCGAAAATTGCAAAGCATTTACCTGGAAGAACAGATAATGAGATAAAAAACTTCTGGAGAACAAGAATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329771" ref_strand="+" ref_description="SGN-E329771 [cTOD-3-C6]">
      <seq>ttttcttcacatcccattcctcttctcttctttattatataaaaaaaatggataaaagaacatgtgattctcaagatgttgaagttaggaaaggtccttggactatggaagaagatttgattctcatcaattacattgctaatcatggtgaaggtgtttggaattccctcgctcgatccgctggtttgaagcgtactggaaaaagttgtagacttagatggcttaattatctccgacctgatgttcggaggggaaatattacaccggaggaacaattgttgatcatggaactacatgccaagtggggaaaccggtgagttgatttctttttctagctagggttttgataattaaataaaatgatgaaattatataaaagaaaatttggaaaattgtagaaatttctccttcatttttttaaaaatgaaaaataaaaaaaatctcccatgtgtttgtatgtgttggatggataaagaggaattgtcccaaaatctcttagaactagatttgacatcatgaaagagagtgatggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="120706" stop="121916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121006" g_stop="121188" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121263" g_stop="121616" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="537" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E329771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121006" e_stop="121188"/>
          <exon e_start="121263" e_stop="121616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTGGTACTAATTGATCGTCATGTTTAGATTGGGGCTTAATTATGTTGTATATATTTAATTTTTTTCGTGTGTAATAGGTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</genome_strand>
        <mrna_strand>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG..........................................................................GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549897" ref_strand="+" ref_description="SGN-E549897 [TUS-6-G15]">
      <seq>tttcatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaactaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaanaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggattttttttctttcaaaacctctctttataatccatttttttcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121816" stop="123140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122116" g_stop="122840" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E549897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122116" e_stop="122840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAA</genome_strand>
        <mrna_strand>TTTCATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAACTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAANAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTC-AAAACCTCTCTTTATAATCC-ATTTTTTTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549951" ref_strand="+" ref_description="SGN-E549951 [TUS-5-K20]">
      <seq>tttgacttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgtnaaaggggaattttttttctttcaaaacctctctttataatccatttttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121816" stop="123138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122116" g_stop="122838" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E549951" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122116" e_stop="122838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCAT</genome_strand>
        <mrna_strand>TTTGACTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTNAAAGGGGAATTTTTTTTCTTTC-AAAACCTCTCTTTATAATCC-ATTTTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398398" ref_strand="+" ref_description="SGN-E398398 [TUS-37-M1]">
      <seq>tttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcctaaaaattatgtttgaaacggagaaagtcattttccaagtaagtattaaaaagtcatttgctggtatgcatgtatttaactgttaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121816" stop="123090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122116" g_stop="122790" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E398398" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122116" e_stop="122790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGG</genome_strand>
        <mrna_strand>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCCTAAAAATTATGTTTGAAACGGAGAAAGTCATTTTCCAAGTAAGTATTAAAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369181" ref_strand="+" ref_description="SGN-E369181 [TUS-23-I2]">
      <seq>ttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121817" stop="123098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122117" g_stop="122798" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E369181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122117" e_stop="122798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTT</genome_strand>
        <mrna_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243532" ref_strand="+" ref_description="SGN-E243532 [cLED-34-P2]">
      <seq>ttgatctgacagtctaaaaatctttaagcttaatcatgttaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattgggtcaatatattattctctcttcctatacatataggtaaaataacaatgatataggtgctcattcagccaccataattagcaaagcaaggacaattgttcgacaggaatttggccttgcattattaccattgaatatgacatatgaatttaagtttgagaacttttgctttttgagcttttcacatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttatttcttcatattatcgatatatataaacaaatttaaaaaataattacggactgggctctatcaaatgaaaaatgattagaagcaatggcttgcaaatagctctgatcgaagtagacggataacttattgttttggttcatcacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121817" stop="122926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122117" g_stop="122626" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E243532" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122117" e_stop="122626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAA-AAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAA</genome_strand>
        <mrna_strand>TTGATCTGACAGTCTAAAAATCTTTAAGCTTAATCATGTTAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTGGGTCAATATATTATTCTCTCTTCCTATACATATAGGTAAAATAACAATGATATAGGTGCTCATTCAGCCACCATAATTAGCAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTGCATTATTACCATTGAATATGACATATGAATTTAAGTTTGAGAACTTTTGCTTTTTGAGCTTTTCACATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTCTTCATATTATCGATATATATAAACAAATTTAAAAAATAATTACGGACTGGGCTCTATCAAATGAAAAATGATTAGAAGCAATGGCTTGCAAATAGCTCTGATCGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231197" ref_strand="+" ref_description="SGN-E231197 [cLED-5-K20]">
      <seq>ttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaanaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121817" stop="122769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122117" g_stop="122470" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E231197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122117" e_stop="122470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAA</genome_strand>
        <mrna_strand>TTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAANAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389619" ref_strand="+" ref_description="SGN-E389619 [TUS-4-K20](-)">
      <seq>tttcatattatcaatatatataaaaaaaattaaaaaataattacggtccggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggattttttttctttcaaaaacctctctttataatccaatttttttcataattttaggatcgagaatatgaggtaattatcatttgagcaactctcggttatccctctctatatatagcaaaacattgaaactggttaaaatcacttccccttgaggatagtttaagttatgtatatataaattaagtttgatatgataactcacaaatagaaagaataaccttttacaatcaattaaattgagctgataatgtaaaatatcggtatatataactgaaatatgcatgtatacaagctctgggacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="122181" stop="123397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122481" g_stop="123097" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E389619" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122481" e_stop="123097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCA</genome_strand>
        <mrna_strand>TTTCATATTATCAATATATATAAAAAAAATTAAAAAATAATTACGGTC-CGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCTCTGGGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329764" ref_strand="+" ref_description="SGN-E329764 [cTOD-3-O17]">
      <seq>tcggttatccctctctatatatagcaaaacattgaaactggttaaaatcacttccccttgaggatagtttaagttatgtatatataaattaagtttgatatgataactcacaaatagaaagaataaccttttacaatcaattaaattgagctgataatgtaaaatatcggtatatataactgaaatatgcatgtatacaagcagtgggacttcaaatatcagccacagaacatgtatacaacctcgattctttaccaaaaattaaacgtgacttaaaagtttaatttcaatataatctgaaataagtagttttcattcatttcatatttagtgtcttaatttcactatacacaaaggttaaagaatgaaaagaagataatctgtgatcttaaatataattaataatgtatattttaaattttattatcttaaatttatcaggaaaaatattgaaattgaaatacttattaaatatatatataaaaaaaccactcttcttgtgataaactcaaaaaataaaataagaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="122584" stop="123714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122884" g_stop="123414" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E329764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122884" e_stop="123414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</genome_strand>
        <mrna_strand>TCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204898" ref_strand="+" ref_description="SGN-E204898 [cLEC-14-J4]">
      <seq>aaagtggaaatgggtagggcctttgtgtatgtaatattgggaggaggagttgctgctggttatgcacctcatgaatttgttaaacgaggtgtctctcatggcgaactatgcatcatctctgaagaacctgttgctccttatgaacgacctgcattaagcaagggttatttactaccagaagatcctgcacgtctgcctgcttttcattgttgtgttggttcaaatgaggaaaggttgacaccgaagtggtacaaggaaaacggcattgagctggtccttggaactcgtgtaaaatcagctgatgtgagaaggaagacattgttgaccgcaaccggtgaaaccataacctacaagattctcatagtggcaactggtgctcgggctatgaagcttgaagagtctggagtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="132191" stop="135151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132491" g_stop="132619" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132620" i_stop="133406" i_length="787">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133407" g_stop="133458" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="181" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133459" i_stop="133715" i_length="257">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133716" g_stop="133796" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133797" i_stop="134721" i_length="925">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134722" g_stop="134840" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="381" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-E204898" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132491" e_stop="132619"/>
          <exon e_start="133407" e_stop="133458"/>
          <exon e_start="133716" e_stop="133796"/>
          <exon e_start="134722" e_stop="134840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCTGTAAATATTACTTCTCTTGTATTACTTGATTCCTTACTTTTTTTTTCCTTCTTCGAGCTCAGTTTCAGCATTCTTTTGATGTTTTTATCTTCTTCTTGTTCTTTCTTTATCTGTGTGTTGCTGCTTATTTATTATAAAACGTTGTAAATGTTCAATTTTGTGAATTCTTATGCGTGTAATCCAATTTGAGTAGGTTTTTTCTTATCTGAGCTGAATTTGGGGTTTTGTGATGACTTTTCGAGTCTAGAATAAAGTTTAATTTATAATCACATTGAAACTGTAGCTTCTACATAGTTTTAGGAGGAACGTAGTGATACTTGAATTGGTAGGATGAATCCCAAAAATCTGTTCTGATTCCAATAACACTGTCACATGATAGAAATGCTAATAATCTGTAGATCTGATATTGAGTTTTTAGTGCATACCGCCTACTTGTGAAGTGCTGCTGGAATGGTTATTTCTTTTTCCTGTTCCTCCCTCTCCTCATTCATTTTCTAGGAGGCAAAAAGATGCATAAACTTATCAATTTATTTATCTCTGATCCAATTTAATGTCATTAGAAATAATAAAGATCATAGCTTCGAGTAATCTGCCTCTTTTATCTATCTTGATCTTTTACCTTCCTTGAGTTAAAACTAATGTCATTAACAAAGGAAGACCAAAATTCATCAGATGCTTCCTTATGGAGACAATCATTCAATGGATGGGTAACACATGATGGCTCTCTCTTGTTTGAGCTTCCTGAAGTTTCCTACCTCATCTTCTAAACTTCTGCTGTTCTTTTCAGGTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAGGTATCTCCCAGTCACCTCACCCCTGTTCAGATTTTTGTCTTAGACATCTTCCAAGTGGATGTTAATGCTTTCTTTAGATTTAAAGATAAGTTTTATTGTGCACTGTAACTTTGGGGAAATATCCTACAAGCATTAATGGTGGAATAATCCCTGGCTCTAGTTACAGTCACTTAACAAGAGTTATCTGGATGAATTGTTTCTTCTTTTCTCTCCTTTGTTCATTATTTTTTAACCTTTTGAGATTTTATTCTATGCAGATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACGGTAAATTTTAAATATCTTTTGCTTCCATTGGCTTTAAATATTTTAGCAGGCGTCATTGTAATTGATCAATTTTTATTTATGGTTGTCATAGATATATTTAGAATTGTCCAAAGTGAGCATTGCAGTTACTGACTGCCTTGAACGTATAAATGTTATTGAATTACTTGCATAGAGGTTTCACACTATGTGTTATTCTATTGTAGTTGATGTTGCAGCATCATTTTGTTGTTGGCATTTGCTTAAGGAATTAAAAAATCCAGAAGTAATCACATATACTTGACGACATGCCCATACACCTCATTTAAAAAATGTCTGAAGGATTACAAATTAAGAGCTTAACTGGACTGTTCCAATTAGTTTAATTCATCACATATGGATGTCTTCAGGGTCAAGTTTGATGTTTGTCTCACCTTTTGTATGACTACCTATTGAGAGGATAGTTGTTTCATAAAAGAAGAAAAAGGATTAACCTTTTCATTCAGAAGGTCATCTTTGCTTGATGTACTAGAAACCTTGTTATATAGGAAGACCATGAACTATTTCCTGATATTTAATATCTTCTTACGTTTCATGTTTAGCCAACATTTTGAAAGATTAGAATCAGGGGAAAAGATTTTGAGACTGAGATCCATGCTTTTCTTGGGCTGTAATTAGCTGCAGCAATACTGGTTTTTAAATCACGTAAAATGAAGCTTCAATAGCCATAGTCATCATAAGGTTTTGGAATTGATCTCTTTTCATGGAATGCACTAGCTGGGAACGGCAACGAAAAAATGCTGCTGGTATATGGCATCAGTGATCAGAATATGTTATTATGTTGAGCTATTTCTTTTTTTTTTTTGGTTACTTTTTAGTGCAAAAGAATGAGGTATTTAATATCTTTCCAAGGATATTGATTAGTCATTGATTGTTCTATTGCCTTTAGGCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG</genome_strand>
        <mrna_strand>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCACCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAG.................................................................................................................................................................................................................................................................ATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>148</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3507" PGL_stop="6363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3518" e_stop="3590"/>
            <exon e_start="3743" e_stop="3951"/>
            <exon e_start="4047" e_stop="4108"/>
            <exon e_start="4613" e_stop="4723"/>
            <exon e_start="4870" e_stop="4962"/>
            <exon e_start="5517" e_stop="6059"/>
            <exon e_start="6345" e_stop="6363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="0.945"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3518" e_stop="3590" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.893">
            <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3743" e_stop="3951" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.950">
            <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4047" e_stop="4108" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4613" e_stop="4723" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4962" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554"/>
          </intron>
          <exon e_serial="6" e_score="0.945">
            <gDNA_exon_boundary e_start="5517" e_stop="6059" e_length="543"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="6060" i_stop="6344" i_length="285"/>
          </intron>
          <exon e_serial="7" e_score="0.737">
            <gDNA_exon_boundary e_start="6345" e_stop="6363" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3518" stop="3590"/>
              <exon start="3743" stop="3951"/>
              <exon start="4047" stop="4108"/>
              <exon start="4613" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3526" stop="3590"/>
              <exon start="3743" stop="3951"/>
              <exon start="4047" stop="4108"/>
              <exon start="4613" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3536" stop="3590"/>
              <exon start="3743" stop="3951"/>
              <exon start="4047" stop="4108"/>
              <exon start="4613" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3743" stop="3951"/>
              <exon start="4047" stop="4108"/>
              <exon start="4613" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4930" stop="4962"/>
              <exon start="5517" stop="6040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5798" stop="6059"/>
              <exon start="6345" stop="6363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAG : CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA : ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG : GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG : GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT : GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCCCAAAACTCAAGTTACTACGAGGACATTGATATTTGGGAGCTGGTAATAGCATTTCAAATACAAATATCAACTGGAGGATGCTTAGTTACACCCCACCGCTGATGGAGAGTTGTGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTTTTGTTAATCATTTAACTATTGTAAATCATCATTTGTTTCTTACTGAACTCATAGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCGAAACATTTGGTTTGAGAGTATTGCAGTCTAATAATTGTGATGTAGTGTCTTCCTCTACTCATTTCCATAAATCAACAAA : AATTTGAGTAAAAGAAAAA</gDNA_template>
            <first_frame> R  I  T  E  A  V  L  E  E  G  E  W  I  R  C  L  Y  N  L  I  L  V  *  G   : A  Q  P  V  H  T  Q  L  E  D  Q  E  L  Q  F  L  N  L  *  N  C  L  R  V  L  Q  N  P  D  I  Y  L  R  G  I  V  W  L  L  Q  A  G  R  G  *  R  G  *  K  K  A  T  E  *  *  L  W  I  M  G  P  V  E  K  S  P  I  S  C  *  :  M  D  L  *  Q  C  L  E  R  E  P  N  T  P  L  W  S  L  H  T  W :   S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R :   I  F  L  H  *  Q  L  K  L  Q  R  S  I  Q  E  Y  H  M  S  L  Q  H  L  L  A  F  M  N  Y  L  L :   M  L  *  M  I  G  S  I  I  A  *  V  I  L  P  G  K  Q  M  S  V  Q  F  V  L  E  L  E  N  V  S  S  A  S  D  I  L  V  K  L  S  K  T  L  L  C  R  E  T  L  L  P  M  P  V  D  L  L  G  S  E  C  *  V  T  A  S  W  Q  *  V  Q  L  S  Q  N  S  S  Y  Y  E  D  I  D  I  W  E  L  V  I  A  F  Q  I  Q  I  S  T  G  G  C  L  V  T  P  H  R  *  W  R  V  V  S  A  G  L  Q  F  *  L  S  S  S  F  V  N  H  L  T  I  V  N  H  H  L  F  L  T  E  L  I  A  A  H  Q  V  L  V  G  Y  S  L  F  L  E  T  F  G  L  R  V  L  Q  S  N  N  C  D  V  V  S  S  S  T  H  F  H  K  S  T  K :   I  *  V  K  E  K </first_frame>
            <second_frame>  E  *  P  K  R  C  W  K  K  V  N  G  F  V  V  F  T  I  S  S  *  F  E  E  :  L  N  Q  Y  I  P  S  *  R  T  R  N  C  S  S  *  I  C  K  I  A  *  G  S  F  K  I  Q  I  F  T  S  E  V  L  Y  G  Y  F  K  Q  G  G  V  E  G  D  R  R  R  R  R  S  D  N  C  G  S  W  V  P  *  K  R  V  Q  S  H  A  K :   W  I  C  S  N  V  *  R  E  N  Q  I  P  H  C  G  A  C  T  H   : G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P   : G  Y  S  F  I  N  S  *  S  C  K  G  A  S  R  S  T  I  C  H  Y  S  T  S  W  P  S  *  I  T  C   : *  C  C  E  *  *  D  Q  S  L  P  K  S  Y  C  R  E  S  R  *  V  F  S  L  C  W  N  W  K  M  S  A  P  P  V  T  Y  L  *  S  L  A  R  L  C  Y  V  E  R  L  C  Y  L  C  Q  L  T  Y  *  G  L  N  A  E  L  L  P  L  G  S  R  F  N  Y  P  K  T  Q  V  T  T  R  T  L  I  F  G  S  W  *  *  H  F  K  Y  K  Y  Q  L  E  D  A  *  L  H  P  T  A  D  G  E  L  *  V  L  D  C  S  S  D  Y  P  R  L  L  L  I  I  *  L  L  *  I  I  I  C  F  L  L  N  S  *  L  P  I  R  C  W  W  V  T  L  Y  S  S  K  H  L  V  *  E  Y  C  S  L  I  I  V  M  *  C  L  P  L  L  I  S  I  N  Q  Q   : K  F  E  *  K  K   </second_frame>
            <third_frame>   N  N  R  S  G  V  G  R  R  *  M  D  S  L  S  L  Q  S  H  L  S  L  R  S :   S  T  S  T  Y  P  A  R  G  P  G  I  A  V  P  E  F  V  K  L  L  K  G  P  S  K  S  R  Y  L  P  Q  R  Y  C  M  A  T  S  S  R  E  G  L  K  G  I  E  E  G  D  G  V  I  I  V  D  H  G  S  R  R  K  E  S  N  L  M  L   : N  G  F  V  A  M  F  R  E  R  T  K  Y  P  I  V  E  P  A  H  M  :  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  :  D  I  P  S  L  T  A  E  A  A  K  E  H  P  G  V  P  Y  V  I  T  A  P  L  G  L  H  E  L  L  V  :  D  V  V  N  D  R  I  N  H  C  L  S  H  I  A  G  K  A  D  E  C  S  V  C  A  G  T  G  K  C  Q  L  R  Q  *  H  T  C  E  A  *  Q  D  F  V  M  *  R  D  F  V  T  Y  A  S  *  L  I  R  V  *  M  L  S  Y  C  L  L  A  V  G  S  I  I  P  K  L  K  L  L  R  G  H  *  Y  L  G  A  G  N  S  I  S  N  T  N  I  N  W  R  M  L  S  Y  T  P  P  L  M  E  S  C  E  C  W  T  A  V  L  I  I  L  V  F  C  *  S  F  N  Y  C  K  S  S  F  V  S  Y  *  T  H  S  C  P  S  G  A  G  G  L  L  S  I  P  R  N  I  W  F  E  S  I  A  V  *  *  L  *  C  S  V  F  L  Y  S  F  P  *  I  N  K  :  N  L  S  K  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3550" stop="3590"/>
                    <exon start="3743" stop="3951"/>
                    <exon start="4047" stop="4108"/>
                    <exon start="4613" stop="4723"/>
                    <exon start="4870" stop="4962"/>
                    <exon start="5517" stop="5621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDSLSLQSHLSLRSSTSTYPARGPGIAVPEFVKLLKGPSKSRYLPQRYCMATSSREGLKGIEEGDGVIIVDHGSRRKESNLMLNGFVAMFRERTKYPIVEPAHMELAEPSIRDAFSLCVQQGARRVIVSPFFLSPGRHWNQDIPSLTAEAAKEHPGVPYVITAPLGLHELLVDVVNDRINHCLSHIAGKADECSVCAGTGKCQLRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4598" e_stop="4723"/>
            <exon e_start="4870" e_stop="4962"/>
            <exon e_start="5517" e_stop="6059"/>
            <exon e_start="6345" e_stop="6363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="0.945"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4598" e_stop="4723" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4962" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="5517" e_stop="6059" e_length="543"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="6060" i_stop="6344" i_length="285"/>
          </intron>
          <exon e_serial="4" e_score="0.737">
            <gDNA_exon_boundary e_start="6345" e_stop="6363" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4598" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4930" stop="4962"/>
              <exon start="5517" stop="6040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5798" stop="6059"/>
              <exon start="6345" stop="6363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG : GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT : GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCCCAAAACTCAAGTTACTACGAGGACATTGATATTTGGGAGCTGGTAATAGCATTTCAAATACAAATATCAACTGGAGGATGCTTAGTTACACCCCACCGCTGATGGAGAGTTGTGAGTGCTGGACTGCAGTTCTGATTATCCTCGTCTTTTGTTAATCATTTAACTATTGTAAATCATCATTTGTTTCTTACTGAACTCATAGCTGCCCATCAGGTGCTGGTGGGTTACTCTCTATTCCTCGAAACATTTGGTTTGAGAGTATTGCAGTCTAATAATTGTGATGTAGTGTCTTCCTCTACTCATTTCCATAAATCAACAAA : AATTTGAGTAAAAGAAAAA</gDNA_template>
            <first_frame> F  Y  D  I  *  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  :  D  I  P  S  L  T  A  E  A  A  K  E  H  P  G  V  P  Y  V  I  T  A  P  L  G  L  H  E  L  L  V  :  D  V  V  N  D  R  I  N  H  C  L  S  H  I  A  G  K  A  D  E  C  S  V  C  A  G  T  G  K  C  Q  L  R  Q  *  H  T  C  E  A  *  Q  D  F  V  M  *  R  D  F  V  T  Y  A  S  *  L  I  R  V  *  M  L  S  Y  C  L  L  A  V  G  S  I  I  P  K  L  K  L  L  R  G  H  *  Y  L  G  A  G  N  S  I  S  N  T  N  I  N  W  R  M  L  S  Y  T  P  P  L  M  E  S  C  E  C  W  T  A  V  L  I  I  L  V  F  C  *  S  F  N  Y  C  K  S  S  F  V  S  Y  *  T  H  S  C  P  S  G  A  G  G  L  L  S  I  P  R  N  I  W  F  E  S  I  A  V  *  *  L  *  C  S  V  F  L  Y  S  F  P  *  I  N  K  :  N  L  S  K  R  K  </first_frame>
            <second_frame>  F  M  T  F  R  S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R :   I  F  L  H  *  Q  L  K  L  Q  R  S  I  Q  E  Y  H  M  S  L  Q  H  L  L  A  F  M  N  Y  L  L :   M  L  *  M  I  G  S  I  I  A  *  V  I  L  P  G  K  Q  M  S  V  Q  F  V  L  E  L  E  N  V  S  S  A  S  D  I  L  V  K  L  S  K  T  L  L  C  R  E  T  L  L  P  M  P  V  D  L  L  G  S  E  C  *  V  T  A  S  W  Q  *  V  Q  L  S  Q  N  S  S  Y  Y  E  D  I  D  I  W  E  L  V  I  A  F  Q  I  Q  I  S  T  G  G  C  L  V  T  P  H  R  *  W  R  V  V  S  A  G  L  Q  F  *  L  S  S  S  F  V  N  H  L  T  I  V  N  H  H  L  F  L  T  E  L  I  A  A  H  Q  V  L  V  G  Y  S  L  F  L  E  T  F  G  L  R  V  L  Q  S  N  N  C  D  V  V  S  S  S  T  H  F  H  K  S  T  K :   I  *  V  K  E  K </second_frame>
            <third_frame>   L  *  H  L  G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P   : G  Y  S  F  I  N  S  *  S  C  K  G  A  S  R  S  T  I  C  H  Y  S  T  S  W  P  S  *  I  T  C   : *  C  C  E  *  *  D  Q  S  L  P  K  S  Y  C  R  E  S  R  *  V  F  S  L  C  W  N  W  K  M  S  A  P  P  V  T  Y  L  *  S  L  A  R  L  C  Y  V  E  R  L  C  Y  L  C  Q  L  T  Y  *  G  L  N  A  E  L  L  P  L  G  S  R  F  N  Y  P  K  T  Q  V  T  T  R  T  L  I  F  G  S  W  *  *  H  F  K  Y  K  Y  Q  L  E  D  A  *  L  H  P  T  A  D  G  E  L  *  V  L  D  C  S  S  D  Y  P  R  L  L  L  I  I  *  L  L  *  I  I  I  C  F  L  L  N  S  *  L  P  I  R  C  W  W  V  T  L  Y  S  S  K  H  L  V  *  E  Y  C  S  L  I  I  V  M  *  C  L  P  L  L  I  S  I  N  Q  Q   : K  F  E  *  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4613" stop="4723"/>
                    <exon start="4870" stop="4962"/>
                    <exon start="5517" stop="5621"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELAEPSIRDAFSLCVQQGARRVIVSPFFLSPGRHWNQDIPSLTAEAAKEHPGVPYVITAPLGLHELLVDVVNDRINHCLSHIAGKADECSVCAGTGKCQLRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4225" e_stop="4815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4225" e_stop="4815" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4225" stop="4815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</gDNA_template>
            <first_frame> K  Y  C  R  G  K  K  L  Q  C  R  R  V  R  N  E  K  S  C  N  M  F  G  C  *  R  A  K  A  K  K  E  N  K  S  I  H  L  F  R  K  E  T  I  E  M  I  *  I  C  V  *  E  I  I  L  K  Y  L  M  R  K  S  G  K  I  K  Q  R  L  I  G  *  R  D  P  F  K  V  G  W  L  G  S  G  N  R  T  K  N  V  L  G  V  R  K  S  *  Y  L  H  V  N  I  S  I  F  L  S  F  N  T  L  K  K  L  E  L  S  F  C  F  V  Y  L  L  *  H  L  G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P  G  I  F  L  F  M  *  S  E  F  S  S  C  D  S  *  C  R  I  C  R  *  C  I  V  L  G  F  D  L  I </first_frame>
            <second_frame>  N  T  V  E  E  R  N  C  S  A  E  G  *  E  M  R  S  L  A  I  C  L  D  V  K  E  Q  K  Q  R  K  K  T  K  A  Y  T  F  S  E  K  K  Q  *  K  *  Y  K  F  A  Y  E  K  S  S  *  N  I  S  *  E  N  L  A  K  *  N  K  D  *  *  D  K  G  I  P  L  R  L  D  G  W  E  V  A  I  G  L  R  M  C  *  E  *  E  N  P  N  I  C  M  L  I  S  L  F  S  F  L  L  I  L  S  K  S  W  N  F  H  F  A  L  Y  I  F  Y  D  I  *  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  V  S  F  F  L  C  S  L  N  S  Q  V  V  I  A  D  V  E  F  A  D  D  V  *  C  *  V  L  T  *   </second_frame>
            <third_frame>   I  L  S  R  K  E  T  A  V  Q  K  G  K  K  *  E  V  L  Q  Y  V  W  M  L  K  S  K  S  K  E  R  K  Q  K  H  T  P  F  Q  K  R  N  N  R  N  D  I  N  L  R  M  R  N  H  L  K  I  S  H  E  K  I  W  Q  N  K  T  K  I  D  R  I  K  G  S  L  *  G  W  M  V  G  K  W  Q  *  D  *  E  C  A  R  S  K  K  I  L  I  F  A  C  *  Y  L  Y  F  P  F  F  *  Y  S  Q  K  V  G  T  F  I  L  L  C  I  S  F  M  T  F  R  S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R  Y  L  S  F  Y  V  V  *  I  L  K  L  *  *  L  M  *  N  L  P  M  M  Y  S  A  R  F  *  P  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="3507" e_stop="3951"/>
            <exon e_start="4028" e_stop="4108"/>
            <exon e_start="4613" e_stop="4900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.329" e_score="0.982"/>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="3507" e_stop="3951" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.329">
            <gDNA_intron_boundary i_start="3952" i_stop="4027" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4028" e_stop="4108" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="4613" e_stop="4900" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3507" stop="3951"/>
              <exon start="4028" stop="4108"/>
              <exon start="4613" stop="4900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAATGGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA : TTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG : GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAA</gDNA_template>
            <first_frame> L  K  M  E  E  *  P  K  R  C  W  K  K  V  N  G  F  V  V  F  T  I  S  S  *  F  E  E  V  I  Y  S  S  C  V  L  L  I  L  H  V  V  I  I  I  E  V  L  F  L  I  S  I  S  S  S  *  G  I  F  N  *  *  F  V  *  L  N  *  C  F  L  C  C  *  N  D  E  S  S  T  S  T  Y  P  A  R  G  P  G  I  A  V  P  E  F  V  K  L  L  K  G  P  S  K  S  R  Y  L  P  Q  R  Y  C  M  A  T  S  S  R  E  G  L  K  G  I  E  E  G  D  G  V  I  I  V  D  H  G  S  R  R  K  E  S  N  L  M  L   : I  L  M  I  T  V  R  W  I  C  S  N  V  *  R  E  N  Q  I  P  H  C  G  A  C  T  H   : G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P  G  I  F  L  F  M  *  S  E  F  S  S  C  D  S  *  C  R  I  C  R  *  C  I  V  L  G  F  D  L  I  S  E  L  K  P  R  T  L  V  K  R  L  *  S  F  T  F  Q  D  I  P  S  L  T  A  E  A  A  </first_frame>
            <second_frame>  *  K  W  K  N  N  R  S  G  V  G  R  R  *  M  D  S  L  S  L  Q  S  H  L  S  L  R  R  *  F  I  V  L  V  F  S  *  F  F  M  L  *  L  S  *  K  F  Y  S  *  L  V  L  V  V  H  K  A  Y  L  T  D  S  S  Y  D  *  I  D  V  F  C  V  V  E  M  M  K  A  Q  P  V  H  T  Q  L  E  D  Q  E  L  Q  F  L  N  L  *  N  C  L  R  V  L  Q  N  P  D  I  Y  L  R  G  I  V  W  L  L  Q  A  G  R  G  *  R  G  *  K  K  A  T  E  *  *  L  W  I  M  G  P  V  E  K  S  P  I  S  C  *  :  F  *  *  *  L  S  D  G  F  V  A  M  F  R  E  R  T  K  Y  P  I  V  E  P  A  H  M  :  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  V  S  F  F  L  C  S  L  N  S  Q  V  V  I  A  D  V  E  F  A  D  D  V  *  C  *  V  L  T  *  Y  Q  S  *  S  Q  G  P  W  *  K  G  F  D  L  S  L  F  R  I  F  L  H  *  Q  L  K  L  Q </second_frame>
            <third_frame>   E  N  G  R  I  T  E  A  V  L  E  E  G  E  W  I  R  C  L  Y  N  L  I  L  V  *  G  G  N  L  *  F  L  C  S  P  D  S  S  C  C  N  Y  H  R  S  F  I  L  D  *  Y  *  *  F  I  R  H  I  *  L  I  V  R  M  I  K  L  M  F  S  V  L  L  K  *  *  K  L  N  Q  Y  I  P  S  *  R  T  R  N  C  S  S  *  I  C  K  I  A  *  G  S  F  K  I  Q  I  F  T  S  E  V  L  Y  G  Y  F  K  Q  G  G  V  E  G  D  R  R  R  R  R  S  D  N  C  G  S  W  V  P  *  K  R  V  Q  S  H  A  N :   F  D  D  N  C  Q  M  D  L  *  Q  C  L  E  R  E  P  N  T  P  L  W  S  L  H  T  W :   S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R  Y  L  S  F  Y  V  V  *  I  L  K  L  *  *  L  M  *  N  L  P  M  M  Y  S  A  R  F  *  P  D  I  R  V  K  A  K  D  L  G  E  K  A  L  I  F  H  F  S  G  Y  S  F  I  N  S  *  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3732" stop="3951"/>
                    <exon start="4028" stop="4068"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDESSTSTYPARGPGIAVPEFVKLLKGPSKSRYLPQRYCMATSSREGLKGIEEGDGVIIVDHGSRRKESNLMLILMITVRWICSNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4040" stop="4108"/>
                    <exon start="4613" stop="4795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDGFVAMFRERTKYPIVEPAHMELAEPSIRDAFSLCVQQGARRVIVSPFFLSPGRHWNQVSFFLCSLNSQVVIADVEFADDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23825" PGL_stop="20950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21709" e_stop="20950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="21709" e_stop="20950" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21709" stop="20950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21709" stop="21163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21709" stop="21164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21666" stop="20950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTATTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAATTTATTAATAATATTTCTTTTAGATAA</gDNA_template>
            <first_frame> F  F  F  F  F  I  F  F  R  L  L  N  L  V  E  P  P  T  R  N  F  V  T  P  K  N  T  F  I  K  *  N  S  E  I  Q  N  F  Q  Q  F  E  K  Q  Q  K  S  L  Y  F  T  P  K  Y  S  N  L  Y  S  W  L  T  A  N  F  Q  V  S  N  I  I  F  V  L  *  Y  N  E  I  W  P  K  T  H  S  N  L  K  S  S  I  L  L  H  Q  T  I  I  Y  Y  S  K  Y  N  H  R  K  *  R  R  R  R  K  N  R  G  R  E  E  A  N  L  S  K  Q  I  G  V  R  R  L  R  K  I  T  G  I  R  E  K  K  V  F  G  *  I  L  E  A  T  E  K  G  I  F  G  K  T  S  S  L  Y  L  W  R  S  T  R  E  W  R  T  I  *  Y  F  D  E  I  *  L  P  F  V  W  P  F  G  *  I  F  T  S  N  F  L  K  *  S  Q  K  I  I  *  *  Y  Y  *  Y  L  F  Y  D  Y  K  L  F  N  F  I  F  L  K  K  Y  I  *  H  T  K  K  I  L  S  F  L  L  E  C  Y  V  T  F  L  I  Y  *  *  Y  F  F  *  I  </first_frame>
            <second_frame>  S  F  S  F  S  Y  S  S  D  Y  *  I  *  S  N  H  P  H  G  T  S  S  L  R  K  T  L  S  *  N  E  I  P  K  S  R  I  F  S  N  L  R  N  N  K  N  H  F  I  S  L  Q  S  I  Q  I  C  I  H  G  *  L  Q  I  F  K  F  Q  I  S  F  L  Y  F  D  T  M  K  Y  G  Q  K  R  I  V  T  *  N  Q  A  F  Y  C  I  K  R  S  S  T  T  A  N  I  T  I  E  N  E  E  E  G  E  K  T  E  E  G  K  K  Q  T  L  A  S  R  S  V  *  D  G  Y  A  K  *  Q  G  Y  E  K  K  R  F  L  A  E  F  *  K  P  P  K  R  V  Y  L  V  K  R  A  H  S  I  Y  G  G  L  H  E  N  G  E  P  S  S  I  L  M  K  F  D  Y  H  L  Y  G  H  L  D  K  F  L  R  V  I  F  L  N  S  P  K  K  S  F  N  N  I  I  N  I  C  F  M  I  I  N  Y  L  I  L  F  F  *  K  N  I  F  D  T  Q  K  K  Y  C  L  F  Y  *  N  V  M  S  L  F  *  F  I  N  N  I  S  F  R  * </second_frame>
            <third_frame>   L  F  L  F  H  I  L  Q  I  I  K  F  S  R  T  T  H  T  E  L  R  H  S  E  K  H  F  H  K  M  K  F  R  N  P  E  F  S  A  I  *  E  T  T  K  I  T  L  F  H  S  K  V  F  K  F  V  F  M  V  N  C  K  F  S  S  F  K  Y  H  F  C  T  L  I  Q  *  N  M  A  K  N  A  *  *  L  E  I  K  H  F  T  A  S  N  D  H  L  L  Q  Q  I  *  P  *  K  M  K  K  K  E  K  K  Q  R  K  G  R  S  K  P  *  Q  A  D  R  C  K  T  V  T  Q  N  N  R  D  T  R  K  K  G  F  W  L  N  S  R  S  H  R  K  G  Y  I  W  *  N  E  L  T  L  F  M  A  V  Y  T  R  M  E  N  H  L  V  F  *  *  N  L  T  T  I  C  M  A  I  W  I  N  F  Y  E  *  F  S  *  I  V  P  K  N  H  L  I  I  L  L  I  F  V  L  *  L  *  I  I  *  F  Y  F  F  K  K  I  Y  L  T  H  K  K  N  I  V  F  S  I  R  M  L  C  H  F  F  N  L  L  I  I  F  L  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21267" stop="21043"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPPKRVYLVKRAHSIYGGLHENGEPSSILMKFDYHLYGHLDKFLRVIFLNSPKKSFNNIINICFMIINYLILFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23825" e_stop="23644"/>
            <exon e_start="21853" e_stop="21832"/>
            <exon e_start="21407" e_stop="21370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.940"/>
          <exon-intron don_prob="0.407" acc_prob="0.683" e_score="0.773"/>
          <exon-only e_score="0.658"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="23825" e_stop="23644" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23643" i_stop="21854" i_length="1790"/>
          </intron>
          <exon e_serial="2" e_score="0.773">
            <gDNA_exon_boundary e_start="21853" e_stop="21832" e_length="22"/>
          </exon>
          <intron i_serial="2" don_prob="0.407" acc_prob="0.683">
            <gDNA_intron_boundary i_start="21831" i_stop="21408" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="0.658">
            <gDNA_exon_boundary e_start="21407" e_stop="21370" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23825" stop="23644"/>
              <exon start="21853" stop="21832"/>
              <exon start="21407" stop="21370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGATCATTGATTCACACGATATTAACTTAATTTTTTAAGGGGAAAAGCCCATTAAGGTAGCTTGCTACCTGGGCTTTTACGCGTCGTCCATGCGTTGCACTACTGCTCGGGCCTGGCGCACCCCACCTAATCGA : AAAAAAACAAAAAGTAGCAACA : CAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAA</gDNA_template>
            <first_frame> *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  G  S  L  I  H  T  I  L  T  *  F  F  K  G  K  S  P  L  R  *  L  A  T  W  A  F  T  R  R  P  C  V  A  L  L  L  G  P  G  A  P  H  L  I  E :   K  K  Q  K  V  A  T  :  Q  I  *  P  *  K  M  K  K  K  E  K   </first_frame>
            <second_frame>  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  D  H  *  F  T  R  Y  *  L  N  F  L  R  G  K  A  H  *  G  S  L  L  P  G  L  L  R  V  V  H  A  L  H  Y  C  S  G  L  A  H  P  T  *  S   : K  K  N  K  K  *  Q  H :   K  Y  N  H  R  K  *  R  R  R  R  K  </second_frame>
            <third_frame>   R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  W  I  I  D  S  H  D  I  N  L  I  F  *  G  E  K  P  I  K  V  A  C  Y  L  G  F  Y  A  S  S  M  R  C  T  T  A  R  A  W  R  T  P  P  N  R  :  K  K  T  K  S  S  N   : T  N  I  T  I  E  N  E  E  E  G  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21270" PGL_stop="22703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21270" e_stop="21346"/>
            <exon e_start="21900" e_stop="22197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.505" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21270" e_stop="21346" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.505">
            <gDNA_intron_boundary i_start="21347" i_stop="21899" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="21900" e_stop="22197" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21270" stop="21346"/>
              <exon start="21900" stop="22197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAG : GGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAATATATATTCATG</gDNA_template>
            <first_frame> R  I  Q  P  K  T  F  F  S  R  I  P  V  I  L  R  N  R  L  T  P  I  C  L  L  R :   E  K  W  Q  V  P  I  L  H  M  L  H  T  R  V  Q  V  *  *  R  R  L  *  *  G  L  L  L  E  W  L  P  E  V  C  G  R  S  T  I  G  T  T  R  G  E  L  R  N  S  M  I  C  L  R  K  M  R  S  V  L  W  *  M  T  S  N  *  K  S  G  Q  I  L  F  E  F  *  C  V  V  F  S  L  G  I  I  M  N  N  D  S  S  F  E  Y  I  F  M </first_frame>
            <second_frame>  E  F  S  Q  K  P  F  F  L  V  S  L  L  F  C  V  T  V  L  H  R  S  A  C  *   : G  K  N  G  R  F  P  Y  C  T  C  C  I  Q  G  S  K  C  S  E  G  D  Y  D  R  D  C  S  W  N  G  C  R  R  F  V  E  E  A  P  L  E  Q  P  E  E  N  *  G  I  L  *  S  A  *  E  K  *  D  Q  C  C  G  E  *  P  V  T  E  S  L  V  R  Y  Y  S  N  F  N  V  L  F  S  H  L  E  L  *  *  I  M  I  V  H  L  N  I  Y  S   </second_frame>
            <third_frame>   N  S  A  K  N  L  F  F  S  Y  P  C  Y  F  A  *  P  S  Y  T  D  L  L  A  K  :  G  K  M  A  G  S  H  I  A  H  A  A  Y  K  G  P  S  V  V  K  E  I  M  I  G  I  A  L  G  M  V  A  G  G  L  W  K  K  H  H  W  N  N  Q  R  R  T  K  E  F  Y  D  L  L  E  K  N  E  I  S  V  V  V  N  D  Q  *  L  K  V  W  S  D  T  I  R  I  L  M  C  C  F  L  T  W  N  Y  N  E  *  *  *  F  I  *  I  Y  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21320" stop="21346"/>
                    <exon start="21900" stop="22100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSYTDLLAKGKMAGSHIAHAAYKGPSVVKEIMIGIALGMVAGGLWKKHHWNNQRRTKEFYDLLEKNEISVVVNDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21339" e_stop="21685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21339" e_stop="21685" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21339" stop="21685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCT</gDNA_template>
            <first_frame> L  L  R  F  A  S  S  L  P  L  F  F  L  L  L  L  H  F  L  W  L  Y  L  L  *  *  M  I  V  *  C  S  K  M  L  D  F  K  L  L  C  V  F  G  H  I  S  L  Y  Q  S  T  K  M  I  F  E  T  *  K  F  A  V  N  H  E  Y  K  F  E  Y  F  G  V  K  *  S  D  F  C  C  F  S  N  C  *  K  F  W  I  S  E  F  H  F  M  K  V  F  F  G  V  T  K  F  R  V  G  G  S  T  K  F  N  N   </first_frame>
            <second_frame>  C  *  G  L  L  L  P  F  L  C  F  F  S  F  F  F  I  F  Y  G  Y  I  C  C  S  R  *  S  F  D  A  V  K  C  L  I  S  S  Y  Y  A  F  L  A  I  F  H  C  I  K  V  Q  K  *  Y  L  K  L  E  N  L  Q  L  T  M  N  T  N  L  N  T  L  E  *  N  K  V  I  F  V  V  S  Q  I  A  E  N  S  G  F  R  N  F  I  L  *  K  C  F  S  E  *  R  S  S  V  W  V  V  R  L  N  L  I  I  </second_frame>
            <third_frame>   A  K  V  C  F  F  P  S  S  V  F  S  P  S  S  S  F  S  M  V  I  F  A  V  V  D  D  R  L  M  Q  *  N  A  *  F  Q  V  T  M  R  F  W  P  Y  F  I  V  S  K  Y  K  N  D  I  *  N  L  K  I  C  S  *  P  *  I  Q  I  *  I  L  W  S  E  I  K  *  F  L  L  F  L  K  L  L  K  I  L  D  F  G  I  S  F  Y  E  S  V  F  R  S  D  E  V  P  C  G  W  F  D  *  I  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21321" e_stop="21346"/>
            <exon e_start="21897" e_stop="22186"/>
            <exon e_start="22650" e_stop="22703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.321" e_score="0.962"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="21321" e_stop="21346" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.321">
            <gDNA_intron_boundary i_start="21347" i_stop="21896" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="21897" e_stop="22186" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22187" i_stop="22649" i_length="463"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="22650" e_stop="22703" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21346"/>
              <exon start="21897" stop="22186"/>
              <exon start="22650" stop="22703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTTACACCGATCTGCTTGCTAAG : AAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTGAAT : ATAAAAGAAATACGATAAAAACCAATATGAATATTATAAAGACAATAAAAAAAA</gDNA_template>
            <first_frame> R  L  T  P  I  C  L  L  R :   R  E  K  W  Q  V  P  I  L  H  M  L  H  T  R  V  Q  V  *  *  R  R  L  *  *  G  L  L  L  E  W  L  P  E  V  C  G  R  S  T  I  G  T  T  R  G  E  L  R  N  S  M  I  C  L  R  K  M  R  S  V  L  W  *  M  T  S  N  *  K  S  G  Q  I  L  F  E  F  *  C  V  V  F  S  L  G  I  I  M  N  N  D  S  S  F  E   : Y  K  R  N  T  I  K  T  N  M  N  I  I  K  T  I  K  K  </first_frame>
            <second_frame>  V  L  H  R  S  A  C  *   : E  G  K  N  G  R  F  P  Y  C  T  C  C  I  Q  G  S  K  C  S  E  G  D  Y  D  R  D  C  S  W  N  G  C  R  R  F  V  E  E  A  P  L  E  Q  P  E  E  N  *  G  I  L  *  S  A  *  E  K  *  D  Q  C  C  G  E  *  P  V  T  E  S  L  V  R  Y  Y  S  N  F  N  V  L  F  S  H  L  E  L  *  *  I  M  I  V  H  L  N  :  I  K  E  I  R  *  K  P  I  *  I  L  *  R  Q  *  K  K </second_frame>
            <third_frame>   S  Y  T  D  L  L  A  K  :  K  G  K  M  A  G  S  H  I  A  H  A  A  Y  K  G  P  S  V  V  K  E  I  M  I  G  I  A  L  G  M  V  A  G  G  L  W  K  K  H  H  W  N  N  Q  R  R  T  K  E  F  Y  D  L  L  E  K  N  E  I  S  V  V  V  N  D  Q  *  L  K  V  W  S  D  T  I  R  I  L  M  C  C  F  L  T  W  N  Y  N  E  *  *  *  F  I  *  I :   *  K  K  Y  D  K  N  Q  Y  E  Y  Y  K  D  N  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21323" stop="21346"/>
                    <exon start="21897" stop="22100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYTDLLAKKGKMAGSHIAHAAYKGPSVVKEIMIGIALGMVAGGLWKKHHWNNQRRTKEFYDLLEKNEISVVVNDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27996" PGL_stop="25659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27996" e_stop="27646"/>
            <exon e_start="27526" e_stop="27176"/>
            <exon e_start="26938" e_stop="26704"/>
            <exon e_start="26614" e_stop="26470"/>
            <exon e_start="26349" e_stop="25659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.974"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.966"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="27996" e_stop="27646" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27645" i_stop="27527" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="27526" e_stop="27176" e_length="351"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27175" i_stop="26939" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="26938" e_stop="26704" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26703" i_stop="26615" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="26614" e_stop="26470" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26469" i_stop="26350" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="26349" e_stop="25659" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27996" stop="27646"/>
              <exon start="27526" stop="27176"/>
              <exon start="26938" stop="26801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27448" stop="27176"/>
              <exon start="26938" stop="26704"/>
              <exon start="26614" stop="26584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26783" stop="26704"/>
              <exon start="26614" stop="26470"/>
              <exon start="26349" stop="25872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421706" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26093" stop="25668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAG : CACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTG : ATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTCTTGATGAAAATCTTGAAGCAAAAATTGCTGATTTTGGACTTGCTCGGTGTTTCGGAGCTGACAAGACTCATCTCAGCACTGGAATTGCTGGAACATT : AGGATATATGGCTCCTGAATACCTCGTTAAAGGACAACTAACAGAGAAGGCTGATGTCTATAGCTACGGGGTGCTTGTTCTTGAAATTGTCAGTGGCAGAAAAAGTATTGCCTTTGCAGAGGACTCTGGCTCTCTACTACAAACA : GTGTGGAAGCTGTACACAACAAATCAGGTAACTGAAGCATTGGACCCTCTACTGAAAGGCGATTTTCCGCGAGAAGAGGCATCAAAGGTACTAAAAGTGGGGTTGTTGTGCACTCAAGCTTCTGTCGCTTTAAGACCATCAATGAGTGAAGTTGTCCAAATGCTAACGTGTGAGGGCTATCAAATTCCAGAACCATGCCAACCACCATTCTTAAATTCGAACTTATTAGCTGGCGGTTCAATCAAATCCAGTATAAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACCAGATGCCGAC</gDNA_template>
            <first_frame> P  T  F  V  T  Y  N  L  N  F  S  K  K  W  S  Q  E  D  D  F  V  S  *  I  V  F  L  I  L  R  F  F  I  Y  K  R  K  N  L  L  *  K  K  H  E  I  *  I  K  F  M  K  E  Y  K  I  N  *  L  L  *  A  C  F  D  F  I  F  C  I  L  Y  *  K  K  C  C  Y  F  Q  E  *  A  K  G  *  *  *  L  *  F  L  E  *  Q  L  S  P  C  L  L  S  Q  R  L  T  Q  L  V  K  D  H  *  G  E  N  E  :  H  A  L  I  L  A  K  Y  R  I  H  T  R  S  R  A  *  I  L  N  M  K  I  L  R  R  Q  Q  T  T  L  I  L  Q  Q  K  *  D  K  E  E  M  V  L  Y  T  K  G  L  C  L  M  G  M  L  L  Q  L  R  D  Y  F  S  I  Q  D  N  G  L  M  T  S  S  M  R  S  I  S  S  M  E  L  N  T  K  I  L  S  S  C  W  V  A  A  L  K  A  P  R  A  C  S  Y  T  S  L  *  P  I  R  V  *  I  N  T  S  L  :  I  K  T  R  *  R  F  *  D  G  K  N  V  S  V  L  *  L  E  Q  H  K  A  L  I  S  S  M  E  V  Q  R  S  E  S  S  I  G  T  S  R  A  P  M  Y  F  L  M  K  I  L  K  Q  K  L  L  I  L  D  L  L  G  V  S  E  L  T  R  L  I  S  A  L  E  L  L  E  H   : *  D  I  W  L  L  N  T  S  L  K  D  N  *  Q  R  R  L  M  S  I  A  T  G  C  L  F  L  K  L  S  V  A  E  K  V  L  P  L  Q  R  T  L  A  L  Y  Y  K  Q :   C  G  S  C  T  Q  Q  I  R  *  L  K  H  W  T  L  Y  *  K  A  I  F  R  E  K  R  H  Q  R  Y  *  K  W  G  C  C  A  L  K  L  L  S  L  *  D  H  Q  *  V  K  L  S  K  C  *  R  V  R  A  I  K  F  Q  N  H  A  N  H  H  S  *  I  R  T  Y  *  L  A  V  Q  S  N  P  V  *  E  V  *  S  Q  M  H  S  I  N  L  M  N  H  H  L  M  P  P  P  L  S  P  *  V  C  K  A  H  Q  L  D  H  T  K  V  M  N  S  F  *  K  S  L  K  I  R  N  N  C  K  D  I  I  *  K  W  K  F  W  E  I  F  Y  Q  Y  I  F  C  T  V  I  E  L  V  *  F  H  F  *  I  F  G  E  *  *  Y  K  Q  V  *  T  E  A  *  I  L  Y  H  F  Q  I  G  S  *  I  A  *  C  *  F  V  C  P  G  F  L  S  L  *  N  A  I  I  *  L  N  Y  V  D  I  A  G  S  F  G  P  H  F  E  L  P  D  A  D </first_frame>
            <second_frame>  Q  L  L  *  P  T  I  *  T  F  Q  R  N  G  P  R  K  M  T  S  F  H  K  L  Y  F  L  F  *  D  F  L  Y  I  K  G  K  I  F  Y  K  R  N  T  K  F  R  L  N  L  *  K  N  T  K  S  I  D  F  C  E  P  V  L  T  L  S  S  A  F  C  T  E  K  N  A  V  I  F  R  N  K  Q  R  G  D  S  S  Y  S  S  W  S  D  S  F  H  H  A  C  S  L  S  G  L  H  S  S  *  K  I  I  K  A  K  T  S :   T  H  *  S  W  Q  N  I  E  F  I  Q  E  V  E  L  E  F  *  I  *  K  S  *  E  G  N  K  L  L  *  S  F  N  K  S  R  T  R  R  K  W  F  C  I  Q  R  D  S  A  *  W  E  C  Y  C  S  *  E  T  I  F  Q  Y  K  T  M  G  *  *  L  L  Q  *  G  Q  S  H  P  W  N  *  T  Q  K  S  C  Q  V  V  G  L  Q  H  *  R  P  R  E  P  A  R  I  R  V  C  D  Q  *  E  S  R  S  I  P  L  * :   *  R  Q  G  K  D  S  K  M  G  R  T  F  P  Y  Y  S  W  N  S  T  R  H  *  F  P  P  W  R  F  R  D  Q  N  H  P  *  G  H  Q  E  L  Q  C  T  S  *  *  K  S  *  S  K  N  C  *  F  W  T  C  S  V  F  R  S  *  Q  D  S  S  Q  H  W  N  C  W  N  I  :  R  I  Y  G  S  *  I  P  R  *  R  T  T  N  R  E  G  *  C  L  *  L  R  G  A  C  S  *  N  C  Q  W  Q  K  K  Y  C  L  C  R  G  L  W  L  S  T  T  N   : S  V  E  A  V  H  N  K  S  G  N  *  S  I  G  P  S  T  E  R  R  F  S  A  R  R  G  I  K  G  T  K  S  G  V  V  V  H  S  S  F  C  R  F  K  T  I  N  E  *  S  C  P  N  A  N  V  *  G  L  S  N  S  R  T  M  P  T  T  I  L  K  F  E  L  I  S  W  R  F  N  Q  I  Q  Y  K  K  F  S  L  K  C  T  L  *  T  *  *  I  I  I  L  C  H  H  H  *  V  L  K  Y  A  K  L  I  N  W  T  T  Q  K  *  *  I  P  F  K  R  V  *  K  Y  E  I  I  A  R  T  *  Y  R  N  G  S  F  G  R  F  F  I  S  T  F  F  V  Q  *  *  N  *  Y  D  F  I  F  E  F  L  V  S  D  N  T  S  K  C  R  Q  K  H  R  Y  F  I  I  F  K  *  V  H  E  L  L  N  A  N  S  F  V  L  A  F  C  H  Y  E  M  L  S  Y  N  *  I  M  W  I  *  P  V  H  L  D  P  I  L  N  Y  Q  M  P   </second_frame>
            <third_frame>   N  F  C  D  L  Q  F  K  L  F  K  E  M  V  P  G  R  *  L  R  F  I  N  C  I  S  Y  F  E  I  F  Y  I  *  K  E  K  S  S  I  K  E  T  R  N  L  D  *  I  Y  E  R  I  Q  N  Q  L  T  F  V  S  L  F  *  L  Y  L  L  H  F  V  L  K  K  M  L  L  F  S  G  I  S  K  G  V  I  V  A  I  V  L  G  V  T  A  F  T  M  L  A  L  S  A  A  Y  T  A  R  K  R  S  L  R  R  K  R   : A  R  I  N  L  G  K  I  S  N  S  Y  K  K  S  S  L  N  F  K  Y  E  N  L  E  K  A  T  N  Y  F  D  P  S  T  K  V  G  Q  G  G  N  G  S  V  Y  K  G  T  L  P  N  G  N  V  I  A  V  K  R  L  F  F  N  T  R  Q  W  V  D  D  F  F  N  E  V  N  L  I  H  G  I  E  H  K  N  L  V  K  L  L  G  C  S  I  E  G  P  E  S  L  L  V  Y  E  F  V  T  N  K  S  L  D  Q  Y  L  F   : D  K  D  K  V  K  I  L  R  W  E  E  R  F  R  I  I  V  G  T  A  Q  G  I  D  F  L  H  G  G  S  E  I  R  I  I  H  R  D  I  K  S  S  N  V  L  L  D  E  N  L  E  A  K  I  A  D  F  G  L  A  R  C  F  G  A  D  K  T  H  L  S  T  G  I  A  G  T  L :   G  Y  M  A  P  E  Y  L  V  K  G  Q  L  T  E  K  A  D  V  Y  S  Y  G  V  L  V  L  E  I  V  S  G  R  K  S  I  A  F  A  E  D  S  G  S  L  L  Q  T  :  V  W  K  L  Y  T  T  N  Q  V  T  E  A  L  D  P  L  L  K  G  D  F  P  R  E  E  A  S  K  V  L  K  V  G  L  L  C  T  Q  A  S  V  A  L  R  P  S  M  S  E  V  V  Q  M  L  T  C  E  G  Y  Q  I  P  E  P  C  Q  P  P  F  L  N  S  N  L  L  A  G  G  S  I  K  S  S  I  R  S  L  V  S  N  A  L  Y  K  L  D  E  S  S  S  Y  A  T  T  T  E  S  L  S  M  Q  S  S  S  T  G  P  H  K  S  D  E  F  L  L  K  E  S  E  N  T  K  *  L  Q  G  H  N  I  E  M  E  V  L  G  D  F  L  S  V  H  F  L  Y  S  N  R  I  S  M  I  S  F  L  N  F  W  *  V  I  I  Q  A  S  V  D  R  S  I  D  T  L  S  F  S  N  R  F  M  N  C  L  M  L  I  R  L  S  W  L  F  V  I  M  K  C  Y  H  I  I  K  L  C  G  Y  S  R  F  I  W  T  P  F  *  T  T  R  C  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27802" stop="27646"/>
                    <exon start="27526" stop="27176"/>
                    <exon start="26938" stop="26704"/>
                    <exon start="26614" stop="26470"/>
                    <exon start="26349" stop="25948"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLLHFVLKKMLLFSGISKGVIVAIVLGVTAFTMLALSAAYTARKRSLRRKRARINLGKISNSYKKSSLNFKYENLEKATNYFDPSTKVGQGGNGSVYKGTLPNGNVIAVKRLFFNTRQWVDDFFNEVNLIHGIEHKNLVKLLGCSIEGPESLLVYEFVTNKSLDQYLFDKDKVKILRWEERFRIIVGTAQGIDFLHGGSEIRIIHRDIKSSNVLLDENLEAKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLVKGQLTEKADVYSYGVLVLEIVSGRKSIAFAEDSGSLLQTVWKLYTTNQVTEALDPLLKGDFPREEASKVLKVGLLCTQASVALRPSMSEVVQMLTCEGYQIPEPCQPPFLNSNLLAGGSIKSSIRSLVSNALYKLDESSSYATTTESLSMQSSSTGPHKSDEFLLKESENTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41104" PGL_stop="37819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41104" e_stop="41069"/>
            <exon e_start="40196" e_stop="39977"/>
            <exon e_start="39884" e_stop="39801"/>
            <exon e_start="39259" e_stop="39180"/>
            <exon e_start="38855" e_stop="38712"/>
            <exon e_start="38171" e_stop="37819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.904" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.986"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41104" e_stop="41069" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.904" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41068" i_stop="40197" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40196" e_stop="39977" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="39976" i_stop="39885" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39884" e_stop="39801" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.473" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39800" i_stop="39260" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39259" e_stop="39180" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.983">
            <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="38855" e_stop="38712" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38711" i_stop="38172" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="38171" e_stop="37819" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41104" stop="41069"/>
              <exon start="40196" stop="39977"/>
              <exon start="39884" stop="39801"/>
              <exon start="39259" stop="39180"/>
              <exon start="38855" stop="38787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39259" stop="39180"/>
              <exon start="38855" stop="38712"/>
              <exon start="38171" stop="37819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39259" stop="39180"/>
              <exon start="38855" stop="38712"/>
              <exon start="38171" stop="37904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATCAAGGATTATCGTTTATTGACTGATATTCTG : GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG : TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG : GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG : GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCG : GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGGACCTGTAACTAATGATTCAACTTTGAATTCAGCTACACCAGCAGTTCTAATCCGTAGTGCGGCGGAGTGTGATGAGGAGGAAAAAAGTGATGCTCTGAATTCGAAAAGTGATAATGGATC</gDNA_template>
            <first_frame> E  I  K  D  Y  R  L  L  T  D  I  L  :  G  L  E  D  H  L  G  D  M  D  F  K  I  A  G  T  R  N  G  V  T  A  I  Q  L  D  I  K  P  A  G  I  P  L  D  I  I  C  E  S  L  D  P  A  L  K  G  R  L  Q  I  L  E  H  M  E  R  E  I  S  A  P  R  I  Q  D  N  I  Y  S  P  R  L   : V  T  S  K  Y  S  N  D  A  L  R  R  L  I  G  P  V  G  A  L  K  R  K  I  E  D  E  T   : G  A  R  I  S  V  S  D  G  T  L  T  I  I  A  K  N  Q  S  V  M  E  K  V  Q  E  K  :  V  D  F  I  I  G  R  E  I  E  I  G  G  V  Y  K  G  I  V  V  S  V  K  E  Y  G  A  F  V  E  F  N  G  G  Q  Q  G  L  L  H  I  S  E  L  S  H  D  P  :  V  S  R  V  S  D  V  V  S  V  G  Q  Q  L  S  L  M  C  I  G  Q  D  V  R  G  N  I  N  L  S  L  K  A  T  L  P  R  P  K  S  K  T  D  I  C  V  D  E  P  V  A  P  T  S  Q  E  V  N  V  W  A  A  I  E  D  K  S  N  E  Q  E  N  Q  G  A  S  M  G  P  V  T  N  D  S  T  L  N  S  A  T  P  A  V  L  I  R  S  A  A  E  C  D  E  E  E  K  S  D  A  L  N  S  K  S  D  N  G   </first_frame>
            <second_frame>  K  S  R  I  I  V  Y  *  L  I  F  W :   V  W  R  I  I  W  V  T  W  I  L  R  L  L  V  P  V  M  V  *  R  P  Y  N  *  I  L  N  L  L  E  F  L  W  I  S  Y  V  R  V  *  I  L  H  L  K  G  G  F  K  S  S  S  T  W  S  V  R  *  V  L  H  V  F  R  I  T  Y  I  L  L  G  *  :  L  R  Q  N  T  A  M  M  H  F  V  A  *  L  V  L  L  V  L  *  R  G  K  L  K  M  K  Q  :  V  H  G  S  R  L  V  M  E  H  L  L  *  L  P  K  I  S  R  *  W  R  K  Y  R  R  R :   L  I  L  *  L  D  V  K  L  R  L  E  E  Y  I  K  V  L  L  Y  L  L  K  N  M  A  P  L  W  S  L  M  V  D  N  R  A  S  Y  I  F  Q  N  Y  H  T  T  R :   F  P  E  F  Q  M  W  Y  L  W  D  S  N  F  L  *  C  V  *  D  R  T  F  V  V  I  L  I  Y  H  *  K  P  P  C  L  D  L  N  L  R  Q  T  F  V  L  M  N  L  L  L  L  L  V  K  R  L  M  F  G  L  L  L  R  I  N  P  M  S  K  K  T  K  V  L  L  W  D  L  *  L  M  I  Q  L  *  I  Q  L  H  Q  Q  F  *  S  V  V  R  R  S  V  M  R  R  K  K  V  M  L  *  I  R  K  V  I  M  D  </second_frame>
            <third_frame>   N  Q  G  L  S  F  I  D  *  Y  S   : G  S  G  G  S  S  G  *  H  G  F  *  D  C  W  Y  P  *  W  C  N  G  H  T  I  R  Y  *  T  C  W  N  S  F  G  Y  H  M  *  E  S  R  S  C  T  *  R  E  A  S  N  P  R  A  H  G  A  *  D  K  C  S  T  Y  S  G  *  H  I  F  S  S  A  S :   Y  V  K  I  Q  Q  *  C  T  S  S  L  D  W  S  C  W  C  F  E  E  E  N  *  R  *  N  R :   C  T  D  L  G  *  *  W  N  T  Y  Y  N  C  Q  K  S  V  G  D  G  E  S  T  G  E   : G  *  F  Y  N  W  T  *  N  *  D  W  R  S  I  *  R  Y  C  C  I  C  *  R  I  W  R  L  C  G  V  *  W  W  T  T  G  P  L  T  Y  F  R  I  I  T  R  P   : G  F  Q  S  F  R  C  G  I  C  G  T  A  T  F  F  N  V  Y  R  T  G  R  S  W  *  Y  *  F  I  I  K  S  H  P  A  *  T  *  I  *  D  R  H  L  C  *  *  T  C  C  S  Y  *  S  R  G  *  C  L  G  C  Y  *  G  *  I  Q  *  A  R  K  P  R  C  F  Y  G  T  C  N  *  *  F  N  F  E  F  S  Y  T  S  S  S  N  P  *  C  G  G  V  *  *  G  G  K  K  *  C  S  E  F  E  K  *  *  W  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41104" stop="41069"/>
                    <exon start="40196" stop="39977"/>
                    <exon start="39884" stop="39801"/>
                    <exon start="39259" stop="39180"/>
                    <exon start="38855" stop="38712"/>
                    <exon start="38171" stop="37821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKDYRLLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICESLDPALKGRLQILEHMEREISAPRIQDNIYSPRLVTSKYSNDALRRLIGPVGALKRKIEDETGARISVSDGTLTIIAKNQSVMEKVQEKVDFIIGREIEIGGVYKGIVVSVKEYGAFVEFNGGQQGLLHISELSHDPVSRVSDVVSVGQQLSLMCIGQDVRGNINLSLKATLPRPKSKTDICVDEPVAPTSQEVNVWAAIEDKSNEQENQGASMGPVTNDSTLNSATPAVLIRSAAECDEEEKSDALNSKSDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44221" PGL_stop="41492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44221" e_stop="44209"/>
            <exon e_start="44121" e_stop="43951"/>
            <exon e_start="43517" e_stop="43392"/>
            <exon e_start="43311" e_stop="43266"/>
            <exon e_start="43166" e_stop="43150"/>
            <exon e_start="43014" e_stop="42895"/>
            <exon e_start="42492" e_stop="42355"/>
            <exon e_start="42238" e_stop="42076"/>
            <exon e_start="41532" e_stop="41492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44221" e_stop="44209" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44208" i_stop="44122" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44121" e_stop="43951" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.898">
            <gDNA_intron_boundary i_start="43950" i_stop="43518" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43517" e_stop="43392" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43391" i_stop="43312" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43311" e_stop="43266" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.477" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43265" i_stop="43167" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43166" e_stop="43150" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="43149" i_stop="43015" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43014" e_stop="42895" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42894" i_stop="42493" i_length="402"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42492" e_stop="42355" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="42354" i_stop="42239" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42238" e_stop="42076" e_length="163"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.983">
            <gDNA_intron_boundary i_start="42075" i_stop="41533" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41532" e_stop="41492" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44221" stop="44209"/>
              <exon start="44121" stop="43951"/>
              <exon start="43517" stop="43392"/>
              <exon start="43311" stop="43266"/>
              <exon start="43166" stop="43150"/>
              <exon start="43014" stop="42895"/>
              <exon start="42492" stop="42355"/>
              <exon start="42238" stop="42076"/>
              <exon start="41532" stop="41492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACGAGGTGCAG : GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG : CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG : GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG : ACCCTACTTATGGAAAG : TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG : GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG : GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG : GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</gDNA_template>
            <first_frame> P  R  G  A   : G  N  G  K  C  A  F  I  *  R  E  T  R  S  R  Y  I  G  S  *  C  I  I  C  C  S  N  V  V  R  Y  S  L  G  W  A  N  W  S  N  T  Y  W  K  D  F  R  S  I  C  C  K  S  K  H  G  G   : A  *  H  Q  *  S  *  L  G  I  C  M  Y  E  G  *  N  F  D  D  R  C  P  S  S  *  N  I  *  K  G  F  G  S  C  F  E  T  C  S  S  R   : G  C  *  V  S  *  P  S  N  *  T  R  S  *  S  * :   P  Y  L  W  K   : V  R  A  W  R  S  F  G  K  N  H  T  G  R  *  K  S  S  *  G  R  R  *  *  G  R  P  K  N  S  T  K  D  S  *  Y  S  K  E  T   : G  C  S  Q  K  D  H  F  *  R  A  *  S  G  R  K  V  S  *  *  S  *  A  F  V  L  *  S  W  *  F  T  C  I  T  W  I  C  N  F  F  K  R  G  Y  S   : G  P  L  H  C  Y  P  W  S  T  W  G  C  S  T  S  G  F  P  G  R  S  F  K  Q  A  F  H  A  A  L  *  L  S  T  V  L  Y  K  *  S  W  Q  T  N  W  P  E  *  A  *  S  W  S  W :   H  S  C  *  K  G  S  A  C  C  I  T  P  </first_frame>
            <second_frame>  H  E  V  Q  :  V  M  A  S  V  L  S  S  D  G  K  Q  D  P  D  I  L  A  A  N  A  S  S  A  A  L  M  L  S  D  I  P  W  G  G  P  I  G  V  I  R  I  G  R  I  S  G  Q  F  V  V  N  P  S  M  E  E  :  L  S  I  S  D  L  N  L  V  Y  A  C  T  R  D  K  T  L  M  I  D  V  Q  A  R  E  I  S  E  K  D  L  E  A  A  L  R  L  A  H  P  E  :  A  V  K  Y  L  D  P  Q  I  R  L  A  A  K  A   : D  P  T  Y  G  K  :  F  E  R  G  E  A  L  E  K  I  T  Q  D  V  K  R  A  L  E  E  E  G  D  E  E  G  L  K  I  L  P  K  T  V  D  T  V  R  K  Q  :  V  V  R  R  R  I  I  S  E  G  L  R  V  D  G  R  C  L  D  E  V  R  P  L  Y  C  E  A  G  N  L  P  V  L  H  G  S  A  I  F  S  R  G  D  T  Q  :  V  L  C  T  V  T  L  G  A  P  G  D  A  Q  R  L  D  S  L  V  G  P  S  S  K  R  F  M  L  H  Y  S  F  P  P  F  C  T  N  E  V  G  K  R  T  G  L  N  R  R  E  V  G  H   : G  T  L  A  E  K  A  L  L  A  V  L  P  P </second_frame>
            <third_frame>   T  R  C  R :   *  W  Q  V  C  F  H  L  T  G  N  K  I  Q  I  Y  W  Q  L  M  H  H  L  L  L  *  C  C  Q  I  F  L  G  V  G  Q  L  E  *  Y  V  L  E  G  F  Q  V  N  L  L  *  I  Q  A  W  R  S :   L  A  S  V  I  L  T  W  Y  M  H  V  R  G  I  K  L  *  *  *  M  S  K  L  V  K  Y  L  K  R  I  W  K  L  L  *  D  L  L  I  Q  R :   L  L  S  I  L  T  L  K  L  D  S  Q  L  K  L  :  T  L  L  M  E  S :   S  S  V  E  K  L  W  K  K  S  H  R  T  L  K  E  L  L  R  K  K  V  M  R  K  A  *  K  F  Y  Q  R  Q  L  I  Q  *  G  N  R :   L  F  A  E  G  S  F  L  K  G  L  E  W  T  E  G  V  L  M  K  L  G  L  C  T  V  K  L  V  I  Y  L  Y  Y  M  D  L  Q  F  F  Q  E  G  I  L  R :   S  F  A  L  L  P  L  E  H  L  G  M  L  N  V  W  I  P  W  S  V  L  Q  A  S  V  S  C  C  I  I  A  F  H  R  F  V  Q  M  K  L  A  N  E  L  A  *  I  G  V  K  L  V  M  :  A  L  L  L  K  R  L  C  L  L  Y  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44220" stop="44209"/>
                    <exon start="44121" stop="43951"/>
                    <exon start="43517" stop="43392"/>
                    <exon start="43311" stop="43266"/>
                    <exon start="43166" stop="43150"/>
                    <exon start="43014" stop="42895"/>
                    <exon start="42492" stop="42355"/>
                    <exon start="42238" stop="42076"/>
                    <exon start="41532" stop="41492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEVQVMASVLSSDGKQDPDILAANASSAALMLSDIPWGGPIGVIRIGRISGQFVVNPSMEELSISDLNLVYACTRDKTLMIDVQAREISEKDLEAALRLAHPEAVKYLDPQIRLAAKADPTYGKFERGEALEKITQDVKRALEEEGDEEGLKILPKTVDTVRKQVVRRRIISEGLRVDGRCLDEVRPLYCEAGNLPVLHGSAIFSRGDTQVLCTVTLGAPGDAQRLDSLVGPSSKRFMLHYSFPPFCTNEVGKRTGLNRREVGHGTLAEKALLAVLPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48964" PGL_stop="54644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48964" e_stop="49288"/>
            <exon e_start="49366" e_stop="49409"/>
            <exon e_start="49515" e_stop="49624"/>
            <exon e_start="49926" e_stop="49963"/>
            <exon e_start="50438" e_stop="50515"/>
            <exon e_start="51045" e_stop="51098"/>
            <exon e_start="51178" e_stop="51279"/>
            <exon e_start="51385" e_stop="51473"/>
            <exon e_start="51575" e_stop="51678"/>
            <exon e_start="51821" e_stop="51889"/>
            <exon e_start="51981" e_stop="52096"/>
            <exon e_start="52238" e_stop="52272"/>
            <exon e_start="52355" e_stop="52497"/>
            <exon e_start="53414" e_stop="53536"/>
            <exon e_start="53988" e_stop="54326"/>
            <exon e_start="54612" e_stop="54644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="0.929"/>
          <exon-intron don_prob="0.997" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.108" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.400" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="48964" e_stop="49288" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49366" e_stop="49409" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.768">
            <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49515" e_stop="49624" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49926" e_stop="49963" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.108" acc_prob="0.958">
            <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50438" e_stop="50515" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.717" acc_prob="0.922">
            <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51045" e_stop="51098" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.782">
            <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51178" e_stop="51279" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51385" e_stop="51473" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.935">
            <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51575" e_stop="51678" e_length="104"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51821" e_stop="51889" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.400" acc_prob="0.937">
            <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="51981" e_stop="52096" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="52238" e_stop="52272" e_length="35"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="52355" e_stop="52497" e_length="143"/>
          </exon>
          <intron i_serial="13" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="53414" e_stop="53536" e_length="123"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451"/>
          </intron>
          <exon e_serial="15" e_score="0.979">
            <gDNA_exon_boundary e_start="53988" e_stop="54326" e_length="339"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54327" i_stop="54611" i_length="285"/>
          </intron>
          <exon e_serial="16" e_score="0.545">
            <gDNA_exon_boundary e_start="54612" e_stop="54644" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48964" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48964" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48964" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48965" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49010" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49012" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51279"/>
              <exon start="51385" stop="51473"/>
              <exon start="51575" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53536"/>
              <exon start="53988" stop="54152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49070" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49071" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51279"/>
              <exon start="51385" stop="51473"/>
              <exon start="51575" stop="51632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51279"/>
              <exon start="51385" stop="51473"/>
              <exon start="51575" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50494" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51279"/>
              <exon start="51385" stop="51473"/>
              <exon start="51575" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51410" stop="51473"/>
              <exon start="51575" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51630" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51988" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53536"/>
              <exon start="53988" stop="54321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51995" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53536"/>
              <exon start="53988" stop="54257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52078" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53536"/>
              <exon start="53988" stop="54326"/>
              <exon start="54612" stop="54644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604004" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGCATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG : GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG : CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA : ATACAATGTTGCTGTGAAATGCGCTACTATAACACCTG : ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG : GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG : GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG : TGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG : TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG : GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG : GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG : GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG : TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAG : GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAA : GGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTTCAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCATAAAAATCCATTTTTCGA : TAATAAACACAACATAACTAGGAATTAGAATAT</gDNA_template>
            <first_frame> R  T  A  D  K  H  N  R  V  F  S  Q  R  H  *  Q  L  L  K  A  N  *  S  V  M  L  A  V  R  P  R  L  R  C  S  S  M  A  G  V  A  S  F  V  S  S  S  S  A  S  A  S  S  I  A  S  K  K  F  Y  F  Q  V  N  S  N  R  Q  L  F  N  N  R  V  S  L  T  T  R  I  P  N  A  S  I  R  C  F  A  S  T  S  G  P  T  S  K  I  L  V  Q  N  P  I  V  E  M  D   : G  D  E  M  T  R  V  I  W  K  M  I  K  D  K  :  L  I  Y  P  Y  L  E  L  D  T  K  Y  Y  D  L  G  I  L  N  R  D  A  T  D  D  Q  V  T  V  E  S  A  E  A  T  L  K :   Y  N  V  A  V  K  C  A  T  I  T  P   : D  E  T  R  V  K  E  F  G  L  K  S  M  W  K  S  P  N  G  T  I  R  N  I  L  N   : G  T  V  F  R  E  P  I  L  C  T  N  I  P  R  I  V  P   : G  W  K  K  P  I  C  I  G  R  H  A  F  G  D  Q  Y  R  A  T  D  A  I  I  N  G  P  G  K  L  K  M  V  F   : V  P  E  N  G  E  S  P  T  E  L  D  V  Y  D  F  K  G  P  G  I  A  L  A  M  Y  N  V  D  Q  :  S  I  R  A  F  A  E  S  S  M  S  M  A  F  S  K  K  W  P  L  Y  L  S  T  K  N  T  I  L  K  K  Y  D  G  R :   F  K  D  I  F  Q  E  V  Y  E  E  K  W  K  Q  Q  F  E  E  H  S  I  W :   Y  E  H  R  L  I  D  D  M  V  A  Y  V  L  K  S  E  G  G  Y  V  W  A  C  K  N  Y  D  G  D  V  Q  S  D  L  L  A  Q   : G  F  G  S  L  G  L  M  T  S  V  L  :  L  S  S  D  G  K  T  L  E  A  E  A  A  H  G  T  V  T  R  H  F  R  L  H  Q  K  G  Q  E  T  S  T  N  S  V  A  S  I  F  A  W  T  R  G  L  G  H  R :   A  Q  L  D  G  N  Q  K  L  L  E  F  V  H  T  L  E  A  S  C  I  G  T  I  E  S  G  K  M  T  K  D  L  A  I  L  A  H  G  P  K :   V  S  R  E  F  Y  L  N  T  E  E  F  I  D  A  V  A  Q  K  L  Q  E  K  L  H  A  S  A  P  I  *  V  V  L  D  Y  V  V  R  T  Y  M  Y  E  L  K  K  I  M  S  S  I  L  S  L  L  T  *  L  Y  S  H  C  P  L  R  H  S  L  L  *  F  L  *  L  F  R  Y  K  I  T  G  C  *  V  V  P  S  Y  *  S  S  M  G  C  V  Y  Y  C  L  V  L  F  R  I  L  H  K  N  P  F  F  D :   N  K  H  N  I  T  R  N  *  N   </first_frame>
            <second_frame>  A  R  R  T  N  T  T  E  F  S  H  S  G  I  D  N  F  L  K  P  T  K  V  L  C  S  P  S  D  P  D  S  G  V  P  P  W  P  A  S  L  L  L  S  H  L  H  R  L  Q  H  H  L  *  L  V  K  N  S  I  F  K  S  I  P  I  G  S  S  S  I  T  E  Y  L  S  L  R  E  S  L  M  P  P  F  G  A  S  L  P  P  L  V  R  L  A  K  S  S  F  K  I  P  *  S  K  W  T  :  V  M  K  *  R  G  L  Y  G  K  *  S  K  T  S :   *  S  I  L  I  *  S  W  I  Q  S  I  M  I  *  V  Y  *  T  V  M  P  L  M  T  K  L  L  L  K  V  L  R  Q  P  *   : N  T  M  L  L  *  N  A  L  L  *  H  L  :  M  R  P  E  S  R  N  L  G  *  S  L  C  G  K  V  P  M  A  Q  S  E  T  F  *  T  :  V  L  F  S  G  S  L  Y  Y  A  R  T  F  P  G  L  F  L  :  V  G  R  N  P  F  V  L  V  G  M  L  L  V  I  S  I  V  P  Q  M  Q  L  L  M  G  P  E  S  S  K  W  F  L  :  C  R  K  M  G  N  P  L  R  S  W  M  F  M  I  L  K  V  R  V  L  H  L  P  C  T  M  S  T  S :   Q  F  E  H  L  L  N  H  Q  C  Q  W  H  F  Q  R  N  G  L  F  T  *  V  Q  K  T  Q  F  *  R  N  T  M  E   : G  L  R  T  F  F  K  R  Y  T  K  R  S  G  S  N  S  L  R  N  T  Q  Y   : G  M  S  I  D  *  *  M  T  W  S  L  M  C  *  K  A  R  V  D  M  F  G  H  A  R  T  M  M  E  M  S  R  V  I  C  S  L  K  :  D  L  V  L  W  A  S  *  L  L  Y  C :   Y  L  L  M  A  R  H  *  K  L  K  Q  L  T  A  L  *  Q  D  I  F  G  C  I  K  R  V  K  K  L  V  Q  T  V  L  L  P  F  L  H  G  Q  G  D  L  D  I   : G  L  S  L  M  G  I  K  S  C  W  N  L  F  T  P  L  K  L  L  A  L  G  Q  *  S  P  G  R  *  L  R  T  *  L  Y  *  L  T  D  P   : R  C  Q  E  N  S  T  *  T  L  K  N  L  L  M  L  *  H  R  N  F  K  R  S  F  M  P  R  R  L  F  K  L  Y  W  I  M  *  *  E  H  T  C  M  S  *  R  R  S  *  A  A  S  F  H  C  *  H  N  S  T  H  T  A  R  *  D  I  L  Y  S  S  F  C  S  C  S  G  T  R  *  Q  V  V  E  W  S  L  H  T  D  L  Q  W  V  V  Y  I  I  V  S  F  Y  L  G  S  F  I  K  I  H  F  S   : I  I  N  T  T  *  L  G  I  R  I  </second_frame>
            <third_frame>   H  G  G  Q  T  Q  P  S  F  L  T  A  A  L  T  T  S  *  S  Q  L  K  C  Y  A  R  R  P  T  Q  T  P  V  F  L  H  G  R  R  R  F  F  C  L  I  F  I  G  F  S  I  I  Y  S  *  *  K  I  L  F  S  S  Q  F  Q  S  A  A  L  Q  *  Q  S  I  S  H  Y  A  N  P  *  C  L  H  S  V  L  R  F  H  L  W  S  D  *  Q  N  P  R  S  K  S  H  S  R  N  G  R :   *  *  N  D  E  G  Y  M  E  N  D  Q  R  Q   : A  N  L  S  L  S  R  V  G  Y  K  V  L  *  F  R  Y  I  E  P  *  C  H  *  *  P  S  Y  C  *  K  C  *  G  N  P  E  :  I  Q  C  C  C  E  M  R  Y  Y  N  T  * :   *  D  Q  S  Q  G  I  W  A  E  V  Y  V  E  K  S  Q  W  H  N  Q  K  H  F  K  R :   Y  C  F  P  G  A  Y  T  M  H  E  H  S  Q  D  C  S  W :   L  E  E  T  H  L  Y  W  *  A  C  F  W  *  S  V  S  C  H  R  C  N  Y  *  W  A  R  K  A  Q  N  G  F  C :   A  G  K  W  G  I  P  Y  G  A  G  C  L  *  F  *  R  S  G  Y  C  T  C  H  V  Q  C  R  P   : V  N  S  S  I  C  *  I  I  N  V  N  G  I  F  K  E  M  A  S  L  L  E  Y  K  K  H  N  F  K  E  I  R  W  K  :  V  *  G  H  F  S  R  G  I  R  R  E  V  E  A  T  V  *  G  T  L  N  M  :  V  *  A  *  T  D  R  *  H  G  R  L  C  V  K  K  R  G  W  I  C  L  G  M  Q  E  L  *  W  R  C  P  E  *  S  A  R  S  R :   I  W  F  S  G  P  H  D  F  C  I   : V  I  F  *  W  Q  D  I  R  S  *  S  S  S  R  H  C  N  K  T  F  S  A  A  S  K  G  S  R  N  *  Y  K  Q  C  C  F  H  F  C  M  D  K  G  T  W  T  *  :  G  S  A  *  W  E  S  K  V  V  G  I  C  S  H  P  *  S  F  L  H  W  D  N  R  V  R  E  D  D  *  G  L  S  Y  I  S  S  R  T  Q  :  G  V  K  R  I  L  L  E  H  *  R  I  Y  *  C  C  S  T  E  T  S  R  E  A  S  C  L  G  A  Y  L  S  C  T  G  L  C  S  E  N  I  H  V  *  A  E  E  D  H  E  Q  H  P  F  T  V  N  I  T  L  L  T  L  P  V  E  T  F  F  T  L  V  F  V  V  V  Q  V  Q  D  N  R  L  L  S  G  P  F  I  L  I  F  N  G  L  C  I  L  L  S  R  F  I  *  D  P  S  *  K  S  I  F  R  :  *  *  T  Q  H  N  *  E  L  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49030" stop="49288"/>
                    <exon start="49366" stop="49409"/>
                    <exon start="49515" stop="49624"/>
                    <exon start="49926" stop="49963"/>
                    <exon start="50438" stop="50515"/>
                    <exon start="51045" stop="51098"/>
                    <exon start="51178" stop="51279"/>
                    <exon start="51385" stop="51473"/>
                    <exon start="51575" stop="51678"/>
                    <exon start="51821" stop="51889"/>
                    <exon start="51981" stop="52096"/>
                    <exon start="52238" stop="52272"/>
                    <exon start="52355" stop="52497"/>
                    <exon start="53414" stop="53536"/>
                    <exon start="53988" stop="54081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMLAVRPRLRCSSMAGVASFVSSSSASASSIASKKFYFQVNSNRQLFNNRVSLTTRIPNASIRCFASTSGPTSKILVQNPIVEMDGDEMTRVIWKMIKDKLIYPYLELDTKYYDLGILNRDATDDQVTVESAEATLKYNVAVKCATITPDETRVKEFGLKSMWKSPNGTIRNILNGTVFREPILCTNIPRIVPGWKKPICIGRHAFGDQYRATDAIINGPGKLKMVFVPENGESPTELDVYDFKGPGIALAMYNVDQSIRAFAESSMSMAFSKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQQFEEHSIWYEHRLIDDMVAYVLKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSVASIFAWTRGLGHRAQLDGNQKLLEFVHTLEASCIGTIESGKMTKDLAILAHGPKVSREFYLNTEEFIDAVAQKLQEKLHASAPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="75352" PGL_stop="79244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75431" e_stop="75510"/>
            <exon e_start="77159" e_stop="77634"/>
            <exon e_start="78511" e_stop="78755"/>
            <exon e_start="78851" e_stop="79244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.992" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.473" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="75431" e_stop="75510" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77159" e_stop="77634" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78511" e_stop="78755" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.473">
            <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="78851" e_stop="79244" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75431" stop="75510"/>
              <exon start="77159" stop="77615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75431" stop="75510"/>
              <exon start="77159" stop="77478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75432" stop="75510"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78755"/>
              <exon start="78851" stop="79244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78629" stop="78755"/>
              <exon start="78851" stop="79244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCT : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG : ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</gDNA_template>
            <first_frame> K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  G  I  G  H  L :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L  M  S  F  V  G  E  Q  I  Q  Y  S  *  T  F  L  N  L  G  L  S  F  L  L  L  A  K  C  *  N  Q  M  G  Y  C  A  P  S  L  H  A  L  S  K  Y  S  A  H  V  K  H  S  N  H  S  L  Q  :  I  *  E  H  L  K  Y  F  F  A  P  M  K  L  D  K  R  Y  *  R  A  A  Q  *  M  K  E  I  L  L  S  V  L  H  G  R  G  G  R  V  L  L  K  E  A  M  G  L  N  A  P  L  L  L  R  W  *  L  G  L  L  V  R  Q  E  V  I  Q  A  I  *  H  L  P  D  S  N  V  L  C  N  V  F  *  *  I  S  S  S  C  G  R  V  H  C  S  F  F  R  C  C  A  Y  F  S  S  *  F  Y  N  *  I  S  D  N  F  V  L  R  F  N  K  K  E  K  N  R  F  Y  S  E  </first_frame>
            <second_frame>  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  W  V  A  S  G  I   : Y  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P  *  *  V  L  W  E  S  R  F  S  I  L  R  P  S  S  T  L  A  C  H  S  F  C  W  Q  N  V  E  T  R  W  G  I  V  L  L  L  S  M  H  *  A  S  T  A  L  M  *  S  T  Q  I  T  V  Y  R :   Y  K  N  I  *  S  T  S  S  H  L  *  S  *  T  K  D  T  R  E  L  P  S  K  *  R  R  F  Y  *  A  S  S  T  E  E  E  A  G  F  C  *  R  K  Q  W  D  *  M  L  L  F  S  C  G  G  D  *  A  F  W  *  G  K  R  S  Y  R  L  F  D  I  C  Q  T  Q  M  F  C  V  M  C  F  D  E  Y  P  V  L  V  V  E  Y  T  V  R  S  L  D  V  V  L  I  F  L  L  D  S  T  I  R  Y  Q  T  I  L  S  *  D  L  T  K  R  K  R  I  A  S  I  R  R </second_frame>
            <third_frame>   T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  G  W  H  R  A  S  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  D  E  F  C  G  R  A  D  S  V  F  L  D  L  P  Q  P  W  L  V  I  P  S  A  G  K  M  L  K  P  D  G  V  L  C  S  F  S  P  C  I  E  Q  V  Q  R  S  C  E  A  L  K  S  Q  F  T   : D  I  R  T  F  E  V  L  L  R  T  Y  E  V  R  Q  K  I  L  E  S  C  P  V  N  E  G  D  S  I  E  R  P  P  R  K  R  R  Q  G  S  A  E  G  S  N  G  T  E  C  S  S  S  P  A  V  V  I  R  P  S  G  E  A  R  G  H  T  G  Y  L  T  F  A  R  L  K  C  F  V  *  C  V  L  M  N  I  Q  F  L  W  S  S  T  L  F  V  L  *  M  L  C  L  F  F  F  L  I  L  Q  L  D  I  R  Q  F  C  L  E  I  *  Q  K  G  K  E  S  L  L  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75433" stop="75510"/>
                    <exon start="77159" stop="77634"/>
                    <exon start="78511" stop="78755"/>
                    <exon start="78851" stop="79092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQQAQTPLYSLFVQYSGLHRGWHRASIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFPDEFCGRADSVFLDLPQPWLVIPSAGKMLKPDGVLCSFSPCIEQVQRSCEALKSQFTDIRTFEVLLRTYEVRQKILESCPVNEGDSIERPPRKRRQGSAEGSNGTECSSSPAVVIRPSGEARGHTGYLTFARLKCFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75428" e_stop="75510"/>
            <exon e_start="75761" e_stop="75776"/>
            <exon e_start="77159" e_stop="77634"/>
            <exon e_start="78511" e_stop="78755"/>
            <exon e_start="78851" e_stop="79244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.855"/>
          <exon-intron don_prob="0.196" acc_prob="0.992" e_score="0.688"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.473" e_score="0.928"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.855">
            <gDNA_exon_boundary e_start="75428" e_stop="75510" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75511" i_stop="75760" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="0.688">
            <gDNA_exon_boundary e_start="75761" e_stop="75776" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.196" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75777" i_stop="77158" i_length="1382"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="77159" e_stop="77634" e_length="476"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876"/>
          </intron>
          <exon e_serial="4" e_score="0.928">
            <gDNA_exon_boundary e_start="78511" e_stop="78755" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.473">
            <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="78851" e_stop="79244" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75428" stop="75510"/>
              <exon start="75761" stop="75776"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75428" stop="75510"/>
              <exon start="75761" stop="75776"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75430" stop="75510"/>
              <exon start="75761" stop="75776"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78629" stop="78755"/>
              <exon start="78851" stop="79244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCT : AGCATAGAAGAATCTC : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG : ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCGGAGG</gDNA_template>
            <first_frame> A  K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  G  I  G  H  L :   A  *  K  N  L  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  D  E  F  C  G  R  A  D  S  V  F  L  D  L  P  Q  P  W  L  V  I  P  S  A  G  K  M  L  K  P  D  G  V  L  C  S  F  S  P  C  I  E  Q  V  Q  R  S  C  E  A  L  K  S  Q  F  T   : D  I  R  T  F  E  V  L  L  R  T  Y  E  V  R  Q  K  I  L  E  S  C  P  V  N  E  G  D  S  I  E  R  P  P  R  K  R  R  Q  G  S  A  E  G  S  N  G  T  E  C  S  S  S  P  A  V  V  I  R  P  S  G  E  A  R  G  H  T  G  Y  L  T  F  A  R  L  K  C  F  V  *  C  V  L  M  N  I  Q  F  L  W  S  S  T  L  F  V  L  *  M  L  C  L  F  F  F  L  I  L  Q  L  D  I  R  Q  F  C  L  E  I  *  Q  K  G  K  E  S  L  L  F  G   </first_frame>
            <second_frame>  R  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  W  V  A  S  G  I   : *  H  R  R  I  S :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L  M  S  F  V  G  E  Q  I  Q  Y  S  *  T  F  L  N  L  G  L  S  F  L  L  L  A  K  C  *  N  Q  M  G  Y  C  A  P  S  L  H  A  L  S  K  Y  S  A  H  V  K  H  S  N  H  S  L  Q  :  I  *  E  H  L  K  Y  F  F  A  P  M  K  L  D  K  R  Y  *  R  A  A  Q  *  M  K  E  I  L  L  S  V  L  H  G  R  G  G  R  V  L  L  K  E  A  M  G  L  N  A  P  L  L  L  R  W  *  L  G  L  L  V  R  Q  E  V  I  Q  A  I  *  H  L  P  D  S  N  V  L  C  N  V  F  *  *  I  S  S  S  C  G  R  V  H  C  S  F  F  R  C  C  A  Y  F  S  S  *  F  Y  N  *  I  S  D  N  F  V  L  R  F  N  K  K  E  K  N  R  F  Y  S  E  </second_frame>
            <third_frame>   E  T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  G  W  H  R  A  S  :  S  I  E  E  S   : H  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P  *  *  V  L  W  E  S  R  F  S  I  L  R  P  S  S  T  L  A  C  H  S  F  C  W  Q  N  V  E  T  R  W  G  I  V  L  L  L  S  M  H  *  A  S  T  A  L  M  *  S  T  Q  I  T  V  Y  R :   Y  K  N  I  *  S  T  S  S  H  L  *  S  *  T  K  D  T  R  E  L  P  S  K  *  R  R  F  Y  *  A  S  S  T  E  E  E  A  G  F  C  *  R  K  Q  W  D  *  M  L  L  F  S  C  G  G  D  *  A  F  W  *  G  K  R  S  Y  R  L  F  D  I  C  Q  T  Q  M  F  C  V  M  C  F  D  E  Y  P  V  L  V  V  E  Y  T  V  R  S  L  D  V  V  L  I  F  L  L  D  S  T  I  R  Y  Q  T  I  L  S  *  D  L  T  K  R  K  R  I  A  S  I  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75768" stop="75776"/>
                    <exon start="77159" stop="77634"/>
                    <exon start="78511" stop="78755"/>
                    <exon start="78851" stop="79092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFPDEFCGRADSVFLDLPQPWLVIPSAGKMLKPDGVLCSFSPCIEQVQRSCEALKSQFTDIRTFEVLLRTYEVRQKILESCPVNEGDSIERPPRKRRQGSAEGSNGTECSSSPAVVIRPSGEARGHTGYLTFARLKCFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75352" e_stop="75510"/>
            <exon e_start="76886" e_stop="76891"/>
            <exon e_start="77159" e_stop="77634"/>
            <exon e_start="78511" e_stop="78587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.940" e_score="0.874"/>
          <exon-intron don_prob="0.659" acc_prob="0.992" e_score="0.333"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.975"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="75352" e_stop="75510" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.940">
            <gDNA_intron_boundary i_start="75511" i_stop="76885" i_length="1375"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="76886" e_stop="76891" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76892" i_stop="77158" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="77159" e_stop="77634" e_length="476"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="78511" e_stop="78587" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75352" stop="75510"/>
              <exon start="76886" stop="76891"/>
              <exon start="77159" stop="77561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75361" stop="75510"/>
              <exon start="76886" stop="76891"/>
              <exon start="77159" stop="77585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75429" stop="75510"/>
              <exon start="76886" stop="76891"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCCACCAATACGAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCT : GAAAAG : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTG</gDNA_template>
            <first_frame> Q  P  T  N  T  N  N  N  T  L  R  I  P  Q  T  P  P  R  L  L  P  R  T  H  Q  C  E  T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  G  W  H  R  A  S  :  E  K  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  </first_frame>
            <second_frame>  N  P  P  I  R  T  T  I  H  Y  V  Y  P  R  P  R  L  V  F  F  L  E  L  T  S  A  K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  G  I  G  H  L :   K  R :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L </second_frame>
            <third_frame>   T  H  Q  Y  E  Q  Q  Y  I  T  Y  T  P  D  P  A  S  S  S  S  S  N  S  P  V  R  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  W  V  A  S  G  I   : *  K   : D  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75352" stop="75510"/>
                    <exon start="76886" stop="76891"/>
                    <exon start="77159" stop="77634"/>
                    <exon start="78511" stop="78586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPTNTNNNTLRIPQTPPRLLPRTHQCETQQAQTPLYSLFVQYSGLHRGWHRASEKIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="82954" PGL_stop="87561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82956" e_stop="83567"/>
            <exon e_start="84238" e_stop="84390"/>
            <exon e_start="84631" e_stop="84716"/>
            <exon e_start="85007" e_stop="85091"/>
            <exon e_start="85349" e_stop="85471"/>
            <exon e_start="85564" e_stop="85641"/>
            <exon e_start="85979" e_stop="86108"/>
            <exon e_start="86246" e_stop="86675"/>
            <exon e_start="87544" e_stop="87561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82956" e_stop="83567" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84238" e_stop="84390" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84631" e_stop="84716" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85007" e_stop="85091" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85349" e_stop="85471" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85564" e_stop="85641" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85979" e_stop="86108" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86246" e_stop="86675" e_length="430"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86676" i_stop="87543" i_length="868"/>
          </intron>
          <exon e_serial="9" e_score="0.833">
            <gDNA_exon_boundary e_start="87544" e_stop="87561" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82956" stop="83567"/>
              <exon start="84238" stop="84276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82963" stop="83567"/>
              <exon start="84238" stop="84257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="83400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83567"/>
              <exon start="84238" stop="84304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83567"/>
              <exon start="84238" stop="84274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83046" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83049" stop="83567"/>
              <exon start="84238" stop="84276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83093" stop="83567"/>
              <exon start="84238" stop="84386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83567"/>
              <exon start="84238" stop="84358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83567"/>
              <exon start="84238" stop="84357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83125" stop="83567"/>
              <exon start="84238" stop="84332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83374" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83413" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84264" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85374" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85394" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86069" stop="86108"/>
              <exon start="86246" stop="86675"/>
              <exon start="87544" stop="87561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA : TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTT : AAAAAAAAAGGAAAATAA</gDNA_template>
            <first_frame> L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  :  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  V  L  K  Q  E  T  L  S  Y  R  N  I  I  S  I  L  S  S  S  F  L :   K  K  K  E  N   </first_frame>
            <second_frame>  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  N :   L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  M  Y  *  N  R  K  P  F  H  I  G  I  *  F  Q  S  S  L  L  L  F   : *  K  K  R  K  I  </second_frame>
            <third_frame>   V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S   : I  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S  C  I  K  T  G  N  P  F  I  *  E  Y  N  F  N  P  L  F  F  F  F  :  K  K  K  G  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83103" stop="83567"/>
                    <exon start="84238" stop="84390"/>
                    <exon start="84631" stop="84716"/>
                    <exon start="85007" stop="85091"/>
                    <exon start="85349" stop="85471"/>
                    <exon start="85564" stop="85641"/>
                    <exon start="85979" stop="86108"/>
                    <exon start="86246" stop="86322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86330" stop="86581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82956" e_stop="83567"/>
            <exon e_start="84238" e_stop="84390"/>
            <exon e_start="84631" e_stop="84716"/>
            <exon e_start="85007" e_stop="85091"/>
            <exon e_start="85349" e_stop="85471"/>
            <exon e_start="85564" e_stop="85641"/>
            <exon e_start="85979" e_stop="86108"/>
            <exon e_start="86246" e_stop="86613"/>
            <exon e_start="87467" e_stop="87555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.506"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82956" e_stop="83567" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84238" e_stop="84390" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84631" e_stop="84716" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85007" e_stop="85091" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85349" e_stop="85471" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85564" e_stop="85641" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85979" e_stop="86108" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="0.943">
            <gDNA_exon_boundary e_start="86246" e_stop="86613" e_length="368"/>
          </exon>
          <intron i_serial="8" don_prob="0.674" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86614" i_stop="87466" i_length="853"/>
          </intron>
          <exon e_serial="9" e_score="0.506">
            <gDNA_exon_boundary e_start="87467" e_stop="87555" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82956" stop="83567"/>
              <exon start="84238" stop="84276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82963" stop="83567"/>
              <exon start="84238" stop="84257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="83400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83567"/>
              <exon start="84238" stop="84304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83567"/>
              <exon start="84238" stop="84274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83046" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83049" stop="83567"/>
              <exon start="84238" stop="84276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83093" stop="83567"/>
              <exon start="84238" stop="84386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83567"/>
              <exon start="84238" stop="84358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83567"/>
              <exon start="84238" stop="84357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83125" stop="83567"/>
              <exon start="84238" stop="84332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83374" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83413" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84264" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85063" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86613"/>
              <exon start="87467" stop="87555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85374" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA : TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCAT : ATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</gDNA_template>
            <first_frame> L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  :  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  :  M  E  T  S  W  S  I  R  A  M  T  M  S  I  S  K  Q  I  T  T  N  *  S  E  H  G  K  K  K   </first_frame>
            <second_frame>  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  N :   L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  I :   W  K  L  A  G  A  S  E  P  *  P  C  L  S  L  N  K  S  Q  P  I  S  Q  N  M  E  K  K  R  </second_frame>
            <third_frame>   V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S   : I  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S   : Y  G  N  *  L  E  H  Q  S  H  D  H  V  Y  L  *  T  N  H  N  Q  L  V  R  T  W  K  K  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83103" stop="83567"/>
                    <exon start="84238" stop="84390"/>
                    <exon start="84631" stop="84716"/>
                    <exon start="85007" stop="85091"/>
                    <exon start="85349" stop="85471"/>
                    <exon start="85564" stop="85641"/>
                    <exon start="85979" stop="86108"/>
                    <exon start="86246" stop="86322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86330" stop="86581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="82954" e_stop="83556"/>
            <exon e_start="84225" e_stop="84390"/>
            <exon e_start="84631" e_stop="84716"/>
            <exon e_start="85007" e_stop="85091"/>
            <exon e_start="85349" e_stop="85471"/>
            <exon e_start="85564" e_stop="85641"/>
            <exon e_start="85979" e_stop="86108"/>
            <exon e_start="86246" e_stop="86675"/>
            <exon e_start="87544" e_stop="87561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82954" e_stop="83556" e_length="603"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83557" i_stop="84224" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84225" e_stop="84390" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84631" e_stop="84716" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85007" e_stop="85091" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85349" e_stop="85471" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85564" e_stop="85641" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85979" e_stop="86108" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86246" e_stop="86675" e_length="430"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86676" i_stop="87543" i_length="868"/>
          </intron>
          <exon e_serial="9" e_score="0.833">
            <gDNA_exon_boundary e_start="87544" e_stop="87561" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82954" stop="83556"/>
              <exon start="84225" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82954" stop="83556"/>
              <exon start="84225" stop="84390"/>
              <exon start="84631" stop="84698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="83400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84264" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84657" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85374" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85394" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86069" stop="86108"/>
              <exon start="86246" stop="86675"/>
              <exon start="87544" stop="87561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCA : ATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTT : AAAAAAAAAGGAAAATAA</gDNA_template>
            <first_frame> G  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  :  I  E  F  P  V  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S  C  I  K  T  G  N  P  F  I  *  E  Y  N  F  N  P  L  F  F  F  F  :  K  K  K  G  K  * </first_frame>
            <second_frame>  V  V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q :   L  N  F  Q  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  V  L  K  Q  E  T  L  S  Y  R  N  I  I  S  I  L  S  S  S  F  L :   K  K  K  E  N   </second_frame>
            <third_frame>   L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I   : N  *  I  S  S  L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  M  Y  *  N  R  K  P  F  H  I  G  I  *  F  Q  S  S  L  L  L  F   : *  K  K  R  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83429" stop="83556"/>
                    <exon start="84225" stop="84390"/>
                    <exon start="84631" stop="84716"/>
                    <exon start="85007" stop="85091"/>
                    <exon start="85349" stop="85471"/>
                    <exon start="85564" stop="85641"/>
                    <exon start="85979" stop="86108"/>
                    <exon start="86246" stop="86322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLQQTGTQGFSISGDCYGLTIWLWDFVNTLYVGISSSSDTKNQLNFQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86330" stop="86581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="82980" e_stop="83688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="82980" e_stop="83688" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82980" stop="83688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="83400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83120" stop="83503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTAC</gDNA_template>
            <first_frame> V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  V  T  L  S  P  L  R  F  F  M  C  F  I  F  I  V  I  L  K  I  Q  Y  F  P  F  Y  P  A  L  I  A  V  I  V  H  T  S  L  I  L  </first_frame>
            <second_frame>  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  K  L  L  F  L  L  S  A  S  S  C  V  L  F  L  L  L  F  *  K  F  S  I  F  L  S  I  L  L  *  L  L  L  L  C  I  H  L  *  S  Y </second_frame>
            <third_frame>   A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S  S  Y  S  F  S  S  P  L  L  H  V  F  Y  F  Y  C  Y  F  E  N  S  V  F  S  F  L  S  C  F  D  C  C  Y  C  A  Y  I  F  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83103" stop="83687"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQVTLSPLRFFMCFIFIVILKIQYFPFYPALIAVIVHTSLIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="96987" PGL_stop="86908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96987" e_stop="96851"/>
            <exon e_start="93312" e_stop="92979"/>
            <exon e_start="92004" e_stop="91882"/>
            <exon e_start="91195" e_stop="91127"/>
            <exon e_start="90613" e_stop="90344"/>
            <exon e_start="89672" e_stop="89322"/>
            <exon e_start="89125" e_stop="88848"/>
            <exon e_start="87967" e_stop="87593"/>
            <exon e_start="87509" e_stop="86908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.947" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="96987" e_stop="96851" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.947">
            <gDNA_intron_boundary i_start="96850" i_stop="93313" i_length="3538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93312" e_stop="92979" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92004" e_stop="91882" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91195" e_stop="91127" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91126" i_stop="90614" i_length="513"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90613" e_stop="90344" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.866" acc_prob="0.950">
            <gDNA_intron_boundary i_start="90343" i_stop="89673" i_length="671"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89672" e_stop="89322" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="89321" i_stop="89126" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89125" e_stop="88848" e_length="278"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88847" i_stop="87968" i_length="880"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87967" e_stop="87593" e_length="375"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="87509" e_stop="86908" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96987" stop="96851"/>
              <exon start="93312" stop="92980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96934" stop="96851"/>
              <exon start="93312" stop="92979"/>
              <exon start="92004" stop="91882"/>
              <exon start="91195" stop="91127"/>
              <exon start="90613" stop="90344"/>
              <exon start="89672" stop="89322"/>
              <exon start="89125" stop="88848"/>
              <exon start="87967" stop="87593"/>
              <exon start="87509" stop="86912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93157" stop="92979"/>
              <exon start="92004" stop="91882"/>
              <exon start="91195" stop="91127"/>
              <exon start="90613" stop="90446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93063" stop="92979"/>
              <exon start="92004" stop="91882"/>
              <exon start="91195" stop="91179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89542" stop="89322"/>
              <exon start="89125" stop="88863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87964" stop="87593"/>
              <exon start="87509" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87692" stop="87593"/>
              <exon start="87509" stop="86912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87692" stop="87593"/>
              <exon start="87509" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87691" stop="87593"/>
              <exon start="87509" stop="87066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG : AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG : ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA : GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG : ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG : TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG : TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG : GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG : AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTGAGCAA</gDNA_template>
            <first_frame> S  L  I  P  L  Y  T  F  I  Y  K  L  F  S  R  V  S  G  R  E  N  G  R  E  T  S  S  E  V  G  I  V  C  I  S  F  F  Y  R  H  R  K  D  F  V  R :   G  N  W  I  L  K  L  E  M  A  A  T  A  T  A  S  S  T  G  P  R  Y  A  P  E  D  P  T  L  P  K  P  W  K  G  L  V  D  G  K  T  G  Y  L  Y  F  W  N  P  E  T  N  T  T  Q  Y  E  K  P  V  A  T  P  H  V  G  A  A  Q  H  K  S  S  V  S  V  S  S  S  V  E  R  P  S  Q  S  Q  C  S  D  H  G  D  N  R  G  T  N  G  A  L  S  K  L  S  S  G  E  G  I  Q  :  T  A  R  A  N  E  L  S  R  D  E  T  S  A  P  K  G  Y  S  A  S  A  A  A  S  D  I  S  P  D  A  Y  R  R  Q  H  E  I  S  V  S  :  G  G  D  V  P  P  P  F  T  S  F  E  A  T  G  F  P  S  E  I  L  R  E  :  I  H  Q  A  G  F  P  A  P  S  P  I  Q  A  Q  S  W  P  I  A  L  Q  G  R  D  I  V  A  V  A  K  T  G  S  G  K  T  L  G  F  L  L  P  G  F  I  L  L  K  Q  R  R  S  N  P  Q  S  G  P  T  I  L  V  L  S  P  T  R  E  L  A  T  Q  I  Q  D  E  A  V  K  F  G  R  S  S  K  I  S  C  T  :  C  L  Y  G  G  A  P  K  G  P  Q  L  R  D  L  D  R  G  V  D  I  V  V  A  T  P  G  R  L  N  D  I  L  E  M  R  R  V  R  L  D  Q  V  S  Y  L  V  L  D  E  A  D  R  M  L  D  M  G  F  E  P  Q  I  R  K  I  V  K  E  V  P  T  R  R  Q  T  L  M  Y  T  A  T  W  P  K  E  V  R  R  I  A  A  D  L  L  V  N  P  V  Q  V  N  I  G  N  V  D  E  L  V  A  N  K  S  I  T  Q  :  Y  I  E  V  L  S  Y  M  D  K  Q  K  R  L  D  Q  I  L  R  S  Q  E  P  G  S  K  I  I  I  F  C  S  T  K  K  M  C  D  Q  L  A  R  N  L  T  H  P  F  G  A  A  A  I  H  G  D  K  S  Q  G  E  R  D  H  V  L  S  Q  F  R  T  G  K  S  P  V  L  V  A  T  D  V  A  A  R  G  L  D  V  K  D  I  R :   V  V  V  N  Y  D  F  P  T  G  I  E  D  Y  V  H  R  I  G  R  T  G  R  A  G  A  T  G  E  A  Y  T  F  F  V  D  Q  D  A  K  H  A  S  D  L  I  K  V  L  E  G  A  N  Q  Q  V  P  T  E  L  R  D  M  A  S  R  G  G  G  M  G  R  A  R  R  Q  W  D  S  G  S  G  G  R  E  G  G  H  G  G  R  Y  D  A  G  Y  G  G  R  D  G  A  R  G  G  W  E  A  P  S  S  E  R  S  G  R  V  Y  D  S  D  S  R  D  R :   D  R  H  G  H  G  S  D  A  P  A  S  F  H  G  R  S  F  H  E  T  M  M  Q  G  S  Q  R  R  D  R  S  R  S  R  S  P  N  R  G  S  G  W  G  D  R  K  G  R  E  R  S  R  S  R  S  A  E  R  S  E  R  T  R  I  Q  V  P  V  G  G  S  F  H  E  A  M  M  G  F  T  R  S  S  A  G  D  S  R  K  D  W  E  K  E  R  S  Q  G  D  G  K  S  G  D  G  P  R  A  N  N  W  E  E  *  E  G  K  G  E  P  V  L  I  F  D  V  L  *  E  M  L  E  E  K  G  V  I  F  V  K  L  *  P  L  H  V  L  A  N  S  V  L  G  *  K  K  L  L  A  Y  Y  W  K  *  I  A  E  N  L  Q  M  G  S  F  *  R  M  *  M  *  S  I  L  P  S  N  F  V  *  W  N  Q  P  T  S  K  C  *  A  </first_frame>
            <second_frame>  H  S  Y  L  C  I  L  L  Y  I  N  Y  L  A  E  *  V  G  G  R  T  D  G  R  H  R  R  R  W  E  S  F  V  S  A  S  F  I  V  I  G  K  T  L  S   : E  V  I  G  Y  *  S  L  R  W  L  L  L  Q  L  H  L  L  L  V  H  V  M  H  Q  R  I  P  P  F  P  N  L  G  K  A  *  L  M  V  R  L  D  I  S  I  F  G  I  Q  R  P  I  L  P  N  T  R  S  L  L  L  L  L  M  W  V  L  H  N  I  N  P  L  Y  L  *  V  H  Q  L  R  G  L  L  K  V  N  V  L  T  M  V  T  T  E  V  P  M  V  P  *  A  N  F  P  L  E  R  V  F  R :   L  Q  E  Q  M  S  F  P  A  M  K  H  L  R  L  K  V  I  V  L  Q  L  P  R  V  T  Y  L  Q  M  P  I  A  V  S  M  K  F  L  S  Q :   E  V  M  C  P  H  L  S  H  R  L  K  L  L  G  F  L  Q  R  F  *  G  R :   Y  I  K  L  G  F  L  L  L  P  Q  Y  R  H  S  P  G  P  L  H  F  R  A  V  T  *  *  L  L  Q  R  L  G  L  E  K  L  *  V  S  C  F  L  A  L  F  F  *  S  N  V  G  V  I  L  N  Q  A  L  L  F  W  F  S  R  Q  Q  E  N  *  P  H  R  Y  K  M  K  L  *  S  L  V  D  L  Q  R  F  L  A  R :   V  Y  M  E  A  P  Q  K  A  L  S  Y  E  I  W  I  G  E  L  I  L  L  L  L  P  L  V  D  *  M  I  F  W  R  *  E  E  L  G  W  I  K  F  L  T  W  C  *  M  K  R  I  V  C  W  T  W  D  S  N  L  R  *  G  R  L  *  R  R  C  L  R  D  G  R  H  *  C  T  Q  Q  H  G  L  R  R  S  V  E  L  Q  L  I  Y  W  L  I  Q  F  R  L  T  L  G  M  L  M  S  L  L  R  T  S  L  L  H  S :   T  L  K  S  C  H  I  W  I  N  K  S  V  *  T  R  S  *  D  P  K  S  L  D  Q  K  S  L  S  S  V  Q  L  R  K  C  V  T  N  L  L  A  I  L  H  T  H  L  E  L  L  L  F  M  V  I  N  L  R  V  R  G  I  M  Y  *  A  S  S  A  L  A  S  P  P  F  L  L  Q  L  M  L  L  L  G  A  W  M  S  K  I  S   : G  W  W  S  T  M  I  F  Q  L  V  *  R  T  M  S  T  E  *  E  E  L  V  G  L  V  R  L  V  R  P  T  H  F  L  L  T  R  M  L  N  M  L  Q  I  L  L  K  F  *  K  E  Q  I  S  K  C  L  L  N  Y  V  I  W  L  L  E  E  V  V  W  G  G  L  G  V  N  G  I  L  A  Q  V  D  G  K  E  D  M  G  D  V  M  M  L  A  T  V  D  E  M  E  Q  G  V  V  G  K  P  L  H  Q  K  E  V  D  V  F  M  T  R  I  H  V  T   : E  I  D  M  V  M  A  L  M  L  Q  L  V  S  M  V  E  A  S  M  K  L  *  C  R  V  H  R  D  V  I  E  V  G  A  E  A  L  I  E  V  L  D  G  V  T  E  K  A  G  S  E  V  V  A  V  V  L  K  D  L  S  G  L  V  F  K  F  Q  *  V  A  V  S  M  K  P  *  W  A  S  L  D  H  Q  L  V  I  P  E  R  T  G  K  K  K  D  P  K  V  M  G  N  L  A  M  D  P  V  L  T  I  G  R  S  K  K  V  K  E  S  L  C  *  F  L  M  C  C  R  K  C  W  K  K  K  G  S  F  L  L  N  F  N  H  Y  M  F  W  Q  T  V  F  S  D  R  R  S  F  *  R  I  T  G  N  R  *  L  K  I  C  K  W  E  V  F  D  G  C  K  C  K  V  F  Y  R  Q  T  L  F  N  G  I  S  P  L  L  S  V  E  Q </second_frame>
            <third_frame>   T  H  T  F  V  Y  F  Y  I  *  I  I  *  Q  S  E  W  E  G  E  R  T  G  D  I  V  G  G  G  N  R  L  Y  Q  L  L  L  S  S  S  E  R  L  C  Q  :  R  *  L  D  T  E  A  *  D  G  C  Y  C  N  C  I  F  Y  W  S  T  L  C  T  R  G  S  H  P  S  Q  T  L  E  R  P  S  *  W  *  D  W  I  S  L  F  L  E  S  R  D  Q  Y  Y  P  I  R  E  A  C  C  Y  S  S  C  G  C  C  T  T  *  I  L  C  I  C  K  F  I  S  *  E  A  F  S  K  S  M  F  *  P  W  *  Q  Q  R  Y  Q  W  C  L  E  Q  T  F  L  W  R  G  Y  S   : D  C  K  S  K  *  A  F  P  R  *  N  I  C  A  *  R  L  *  C  F  S  C  R  E  *  H  I  S  R  C  L  S  P  S  A  *  N  F  C  L   : R  R  *  C  A  P  T  F  H  I  V  *  S  Y  W  V  S  F  R  D  F  E  G   : D  T  S  S  W  V  S  C  S  F  P  N  T  G  T  V  L  A  H  C  T  S  G  P  *  H  S  S  C  C  K  D  W  V  W  K  N  S  R  F  L  A  S  W  L  Y  S  S  K  A  T  S  E  *  S  S  I  R  P  Y  Y  F  G  S  L  A  N  K  R  I  S  H  T  D  T  R  *  S  C  E  V  W  *  I  F  K  D  F  L  H   : V  F  I  W  R  R  P  K  R  P  S  A  T  R  S  G  *  G  S  *  Y  C  C  C  Y  P  W  S  I  E  *  Y  F  G  D  E  K  S  *  A  G  S  S  F  L  L  G  V  R  *  S  G  S  Y  A  G  H  G  I  R  T  S  D  K  E  D  C  E  G  G  A  Y  A  T  A  D  T  D  V  H  S  N  M  A  *  G  G  P  *  N  C  S  *  S  I  G  *  S  S  S  G  *  H  W  E  C  *  *  A  C  C  E  Q  V  Y  Y  T   : V  H  *  S  L  V  I  Y  G  *  T  K  A  S  R  P  D  L  E  I  P  R  A  W  I  K  N  H  Y  L  L  F  N  *  E  N  V  *  P  T  C  S  Q  S  Y  T  P  I  W  S  C  C  Y  S  W  *  *  I  S  G  *  E  G  S  C  T  E  P  V  P  H  W  Q  V  P  R  S  C  C  N  *  C  C  C  S  G  L  G  C  Q  R  Y  Q  :  G  G  G  Q  L  *  F  S  N  W  Y  R  G  L  C  P  Q  N  R  K  N  W  S  G  W  C  D  W  *  G  L  H  I  F  C  *  P  G  C  *  T  C  F  R  S  Y  *  S  F  R  R  S  K  S  A  S  A  Y  *  T  T  *  Y  G  F  S  R  R  W  Y  G  E  G  *  A  S  M  G  F  W  L  R  W  T  G  R  R  T  W  G  T  L  *  C  W  L  R  W  T  R  W  S  K  G  W  L  G  S  P  F  I  R  K  K  W  T  C  L  *  L  G  F  T  *  Q  :  R  *  T  W  S  W  L  *  C  S  S  *  F  P  W  S  K  L  P  *  N  Y  D  A  G  F  T  E  T  *  *  K  *  E  Q  K  P  *  *  R  F  W  M  G  *  Q  K  R  Q  G  A  K  S  *  P  *  C  *  K  I  *  A  D  S  Y  S  S  S  S  R  W  Q  F  P  *  S  H  D  G  L  H  *  I  I  S  W  *  F  P  K  G  L  G  K  R  K  I  P  R  *  W  E  I  W  R  W  T  P  C  *  Q  L  G  G  V  R  R  *  R  R  A  C  V  D  F  *  C  V  V  G  N  A  G  R  K  R  G  H  F  C  *  T  L  T  T  T  C  F  G  K  Q  C  S  R  I  E  E  A  F  S  V  L  L  E  I  D  S  *  K  S  A  N  G  K  F  L  T  D  V  N  V  K  Y  F  T  V  K  L  C  L  M  E  S  A  H  F  *  V  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96987" stop="96851"/>
                    <exon start="93312" stop="92979"/>
                    <exon start="92004" stop="91882"/>
                    <exon start="91195" stop="91127"/>
                    <exon start="90613" stop="90344"/>
                    <exon start="89672" stop="89322"/>
                    <exon start="89125" stop="88848"/>
                    <exon start="87967" stop="87593"/>
                    <exon start="87509" stop="87164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2280</number_coding_nucleotides>
                  <number_encoded_amino_acids>760</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLIPLYTFIYKLFSRVSGRENGRETSSEVGIVCISFFYRHRKDFVRGNWILKLEMAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYEKPVATPHVGAAQHKSSVSVSSSVERPSQSQCSDHGDNRGTNGALSKLSSGEGIQTARANELSRDETSAPKGYSASAAASDISPDAYRRQHEISVSGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQIQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTHPFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIEDYVHRIGRTGRAGATGEAYTFFVDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGRARRQWDSGSGGREGGHGGRYDAGYGGRDGARGGWEAPSSERSGRVYDSDSRDRDRHGHGSDAPASFHGRSFHETMMQGSQRRDRSRSRSPNRGSGWGDRKGRERSRSRSAERSERTRIQVPVGGSFHEAMMGFTRSSAGDSRKDWEKERSQGDGKSGDGPRANNWEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="107237" PGL_stop="99757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107237" e_stop="107058"/>
            <exon e_start="106339" e_stop="106139"/>
            <exon e_start="106050" e_stop="105958"/>
            <exon e_start="103793" e_stop="103734"/>
            <exon e_start="103633" e_stop="103361"/>
            <exon e_start="102356" e_stop="102285"/>
            <exon e_start="102212" e_stop="102156"/>
            <exon e_start="101441" e_stop="101301"/>
            <exon e_start="101202" e_stop="101152"/>
            <exon e_start="101079" e_stop="100984"/>
            <exon e_start="100878" e_stop="100795"/>
            <exon e_start="100608" e_stop="100506"/>
            <exon e_start="100401" e_stop="100061"/>
            <exon e_start="99792" e_stop="99757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="0.911"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.097" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="107237" e_stop="107058" e_length="180"/>
          </exon>
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        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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            <referenceDNA id="SGN-E395515" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E300907" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E204276" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E210417" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E316363" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E263724" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E258097" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E401566" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E368632" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E232839" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E238589" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E346980" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E395542" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E204867" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E319853" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E554293" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="100984"/>
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            <referenceDNA id="SGN-E299681" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101018" stop="100984"/>
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            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100394" stop="100061"/>
              <exon start="99792" stop="99757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATCCACAAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG : GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG : GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG : ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG : GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG : ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG : GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG : GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG : CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGA : ATATAATTAAAAAAAGAAATTAAGTAAAAACAAAAA</gDNA_template>
            <first_frame> S  I  H  K  V  R  K  M  K  E  E  Q  H  C  R  S  L  *  P  R  T  *  K  L  G  H  T  P  F  S  L  P  L  Y  F  F  R  A  *  G  F  A  V  S  L  T  I  F  H  R  Q  C  E  Q  F  T  S  P  L  Q  :  V  L  R  S  R  Q  S  V  T  *  V  I  T  I  Y  Q  Y  Y  K  E  V  Y  L  L  F  S  D  M  A  S  G  S  I  M  S  S  A  A  G  K  P  I  T  D  V  V  L  I  D  N  L  P  K  E  I  N  A  M  K  I  N  D  D  K  E  G  K  :  E  M  E  A  A  V  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  K  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  S  I  V  S  L  K  H  C  F  F  S  T  T  E  K  D  E  L  Y  L  N  L  V  L  E  F  V  P  E  T  L  Y  R  V  L  R  H  Y  S  K  A  N  Q  R  M  P  I  I  Y  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  A  Y  I  H  G  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  L  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  N  A  I  D  I  W  S  V  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  :  I  *  L  K  K  E  I  K  *  K  Q  K </first_frame>
            <second_frame>  A  S  T  K  *  E  K  *  K  K  S  S  I  A  E  V  Y  S  Q  E  P  E  N  L  A  I  R  H  F  H  F  H  F  I  S  S  A  L  R  V  L  L  F  H  S  Q  F  S  I  A  N  A  S  N  S  L  H  R  C  R :   F  *  E  A  D  N  L  S  L  E  S  *  P  F  I  S  T  I  R  K  F  I  C  Y  S  V  T  W  L  R  A  V  L  C  L  Q  Q  L  A  N  L  L  L  M  L  C  L  L  T  T  Y  L  K  K  *  M  Q  *  R  S  T  M  T  K  K  E  R :   K  W  K  P  L  L  W  M  G  M  E  L  K  Q  V  T  S  L  *  R  L  L  G  G  K  M  V  S  Q  S  R :   P  *  V  T  W  R  S  V  *  L  D  R  V  P  L  E  L  C  S  R :   P  N  A  L  K  Q  E  K  P  W  Q  *  K  R  S  C  R  T  R  D  T  R  I  G  N  C  R  L  C  D  F  L  I  I  L  V  L  F  H  *  S  T  A  S  F  R  P  Q  K  R  M  S  F  I  *  I  W  F  *  N  L  Y  L  K  L  S  T  V  C  *  D  I  T  A  K  Q  T  N  G  C  L  L  Y  M  S  N  C  T  H  I  R :   Y  L  E  L  W  L  T  Y  M  G  *  E  S  A  T  G  T  S  N  L  R  I  Y  W :   S  T  P  T  H  I  S  L  S  F  V  I  L  G  V  Q  K  S  W :   S  K  A  S  Q  T  F  H  I  S  V  H  V  I  I  V  R  P  N  *  Y  S  E  Q  L  S  T  P  M  Q  L  T  F  G  L  W  V  V  S  *  L  N  C  F  L  D  S :   P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  E :   Y  N  *  K  K  K  L  S  K  N  K   </second_frame>
            <third_frame>   H  P  Q  S  E  K  N  E  R  R  A  A  L  Q  K  S  I  A  K  N  L  K  T  W  P  Y  A  I  F  T  S  T  L  F  L  P  R  L  G  F  C  C  F  T  H  N  F  P  S  P  M  R  A  I  H  F  T  A  A   : G  F  E  K  Q  T  I  C  H  L  S  H  N  H  L  S  V  L  *  G  S  L  F  V  I  Q  *  H  G  F  G  Q  Y  Y  V  F  S  S  W  Q  T  Y  Y  *  C  C  A  Y  *  Q  P  T  *  R  N  K  C  N  E  D  Q  R  *  Q  R  R  K   : G  N  G  S  R  C  C  G  W  E  W  N  *  N  R  S  H  H  C  D  D  Y  W  G  E  K  W  S  A  K  A   : D  H  K  L  H  G  G  A  C  S  W  T  G  F  L  W  N  C  V  P   : G  Q  M  P  *  N  R  R  N  R  G  N  K  K  G  L  A  G  Q  E  I  Q  E  S  G  I  A  D  Y  A  T  S  *  S  S  *  Y  C  F  T  E  A  L  L  L  F  D  H  R  K  G  *  A  L  S  K  F  G  S  R  I  C  T  *  N  S  L  P  C  V  K  T  L  Q  Q  S  K  P  T  D  A  Y  Y  I  C  Q  T  V  H  I  S   : D  I  *  S  F  G  L  H  T  W  D  R  S  L  P  Q  G  H  Q  T  S  E  F  T   : G  Q  P  P  H  T  S  A  *  A  L  *  F  W  E  C  K  S  P   : G  Q  R  R  A  K  H  F  I  Y  L  F  T  L  L  S  C  A  R  T  N  I  R  S  N  *  V  H  Q  C  N  *  H  L  V  C  G  L  C  P  S  *  T  A  S  W  T   : A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S   : N  I  I  K  K  R  N  *  V  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106309" stop="106139"/>
                    <exon start="106050" stop="105958"/>
                    <exon start="103793" stop="103734"/>
                    <exon start="103633" stop="103361"/>
                    <exon start="102356" stop="102285"/>
                    <exon start="102212" stop="102156"/>
                    <exon start="101441" stop="101301"/>
                    <exon start="101202" stop="101152"/>
                    <exon start="101079" stop="100984"/>
                    <exon start="100878" stop="100795"/>
                    <exon start="100608" stop="100506"/>
                    <exon start="100401" stop="100319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITIYQYYKEVYLLFSDMASGSIMSSAAGKPITDVVLIDNLPKEINAMKINDDKEGKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPSIVSLKHCFFSTTEKDELYLNLVLEFVPETLYRVLRHYSKANQRMPIIYVKLYTYQIFRALAYIHGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTNAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107235" stop="107058"/>
                    <exon start="106339" stop="106284"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPQSEKNERRAALQKSIAKNLKTWPYAIFTSTLFLPRLGFCCFTHNFPSPMRAIHFTAAGFEKQTICHLSHNHLSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107203" e_stop="107058"/>
            <exon e_start="106262" e_stop="106139"/>
            <exon e_start="106050" e_stop="105958"/>
            <exon e_start="103793" e_stop="103734"/>
            <exon e_start="103633" e_stop="103361"/>
            <exon e_start="102356" e_stop="102285"/>
            <exon e_start="102212" e_stop="102156"/>
            <exon e_start="101441" e_stop="101301"/>
            <exon e_start="101202" e_stop="101152"/>
            <exon e_start="101079" e_stop="100984"/>
            <exon e_start="100878" e_stop="100795"/>
            <exon e_start="100608" e_stop="100506"/>
            <exon e_start="100401" e_stop="100061"/>
            <exon e_start="99792" e_stop="99757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.993"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.097" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="107203" e_stop="107058" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107057" i_stop="106263" i_length="795"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106262" e_stop="106139" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.867" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106050" e_stop="105958" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103793" e_stop="103734" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.874">
            <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103633" e_stop="103361" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.792" acc_prob="0.985">
            <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102356" e_stop="102285" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102212" e_stop="102156" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.823" acc_prob="0.947">
            <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101441" e_stop="101301" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="101202" e_stop="101152" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="101079" e_stop="100984" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="100878" e_stop="100795" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="100608" e_stop="100506" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="100401" e_stop="100061" e_length="341"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.097">
            <gDNA_intron_boundary i_start="100060" i_stop="99793" i_length="268"/>
          </intron>
          <exon e_serial="14" e_score="0.722">
            <gDNA_exon_boundary e_start="99792" e_stop="99757" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107203" stop="107058"/>
              <exon start="106262" stop="106139"/>
              <exon start="106050" stop="105958"/>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106180" stop="106139"/>
              <exon start="106050" stop="105958"/>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106033" stop="105958"/>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105979" stop="105958"/>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103785" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103597" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="101026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103570" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="101039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103570" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103480" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103476" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103476" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103455" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103423" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102340" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="101027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102339" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102309" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101018" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100394" stop="100061"/>
              <exon start="99792" stop="99757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG : TGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG : GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG : ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG : GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG : ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG : GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG : GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG : CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGA : ATATAATTAAAAAAAGAAATTAAGTAAAAACAAAAA</gDNA_template>
            <first_frame> S  I  A  E  V  Y  S  Q  E  P  E  N  L  A  I  R  H  F  H  F  H  F  I  S  S  A  L  R  V  L  L  F  H  S  Q  F  S  I  A  N  A  S  N  S  L  H  R  C  S :   D  M  A  S  G  S  I  M  S  S  A  A  G  K  P  I  T  D  V  V  L  I  D  N  L  P  K  E  I  N  A  M  K  I  N  D  D  K  E  G  K  :  E  M  E  A  A  V  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  K  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  S  I  V  S  L  K  H  C  F  F  S  T  T  E  K  D  E  L  Y  L  N  L  V  L  E  F  V  P  E  T  L  Y  R  V  L  R  H  Y  S  K  A  N  Q  R  M  P  I  I  Y  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  A  Y  I  H  G  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  L  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  N  A  I  D  I  W  S  V  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  :  I  *  L  K  K  E  I  K  *  K  Q  K </first_frame>
            <second_frame>  A  L  Q  K  S  I  A  K  N  L  K  T  W  P  Y  A  I  F  T  S  T  L  F  L  P  R  L  G  F  C  C  F  T  H  N  F  P  S  P  M  R  A  I  H  F  T  A  A   : V  T  W  L  R  A  V  L  C  L  Q  Q  L  A  N  L  L  L  M  L  C  L  L  T  T  Y  L  K  K  *  M  Q  *  R  S  T  M  T  K  K  E  R :   K  W  K  P  L  L  W  M  G  M  E  L  K  Q  V  T  S  L  *  R  L  L  G  G  K  M  V  S  Q  S  R :   P  *  V  T  W  R  S  V  *  L  D  R  V  P  L  E  L  C  S  R :   P  N  A  L  K  Q  E  K  P  W  Q  *  K  R  S  C  R  T  R  D  T  R  I  G  N  C  R  L  C  D  F  L  I  I  L  V  L  F  H  *  S  T  A  S  F  R  P  Q  K  R  M  S  F  I  *  I  W  F  *  N  L  Y  L  K  L  S  T  V  C  *  D  I  T  A  K  Q  T  N  G  C  L  L  Y  M  S  N  C  T  H  I  R :   Y  L  E  L  W  L  T  Y  M  G  *  E  S  A  T  G  T  S  N  L  R  I  Y  W :   S  T  P  T  H  I  S  L  S  F  V  I  L  G  V  Q  K  S  W :   S  K  A  S  Q  T  F  H  I  S  V  H  V  I  I  V  R  P  N  *  Y  S  E  Q  L  S  T  P  M  Q  L  T  F  G  L  W  V  V  S  *  L  N  C  F  L  D  S :   P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  E :   Y  N  *  K  K  K  L  S  K  N  K   </second_frame>
            <third_frame>   H  C  R  S  L  *  P  R  T  *  K  L  G  H  T  P  F  S  L  P  L  Y  F  F  R  A  *  G  F  A  V  S  L  T  I  F  H  R  Q  C  E  Q  F  T  S  P  L  Q  :  *  H  G  F  G  Q  Y  Y  V  F  S  S  W  Q  T  Y  Y  *  C  C  A  Y  *  Q  P  T  *  R  N  K  C  N  E  D  Q  R  *  Q  R  R  K   : G  N  G  S  R  C  C  G  W  E  W  N  *  N  R  S  H  H  C  D  D  Y  W  G  E  K  W  S  A  K  A   : D  H  K  L  H  G  G  A  C  S  W  T  G  F  L  W  N  C  V  P   : G  Q  M  P  *  N  R  R  N  R  G  N  K  K  G  L  A  G  Q  E  I  Q  E  S  G  I  A  D  Y  A  T  S  *  S  S  *  Y  C  F  T  E  A  L  L  L  F  D  H  R  K  G  *  A  L  S  K  F  G  S  R  I  C  T  *  N  S  L  P  C  V  K  T  L  Q  Q  S  K  P  T  D  A  Y  Y  I  C  Q  T  V  H  I  S   : D  I  *  S  F  G  L  H  T  W  D  R  S  L  P  Q  G  H  Q  T  S  E  F  T   : G  Q  P  P  H  T  S  A  *  A  L  *  F  W  E  C  K  S  P   : G  Q  R  R  A  K  H  F  I  Y  L  F  T  L  L  S  C  A  R  T  N  I  R  S  N  *  V  H  Q  C  N  *  H  L  V  C  G  L  C  P  S  *  T  A  S  W  T   : A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S   : N  I  I  K  K  R  N  *  V  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107203" stop="107058"/>
                    <exon start="106262" stop="106139"/>
                    <exon start="106050" stop="105958"/>
                    <exon start="103793" stop="103734"/>
                    <exon start="103633" stop="103361"/>
                    <exon start="102356" stop="102285"/>
                    <exon start="102212" stop="102156"/>
                    <exon start="101441" stop="101301"/>
                    <exon start="101202" stop="101152"/>
                    <exon start="101079" stop="100984"/>
                    <exon start="100878" stop="100795"/>
                    <exon start="100608" stop="100506"/>
                    <exon start="100401" stop="100319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAEVYSQEPENLAIRHFHFHFISSALRVLLFHSQFSIANASNSLHRCSDMASGSIMSSAAGKPITDVVLIDNLPKEINAMKINDDKEGKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPSIVSLKHCFFSTTEKDELYLNLVLEFVPETLYRVLRHYSKANQRMPIIYVKLYTYQIFRALAYIHGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTNAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101206" e_stop="101152"/>
            <exon e_start="101079" e_stop="100984"/>
            <exon e_start="100878" e_stop="100795"/>
            <exon e_start="100608" e_stop="100506"/>
            <exon e_start="100401" e_stop="100061"/>
            <exon e_start="99792" e_stop="99757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.097" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101206" e_stop="101152" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101079" e_stop="100984" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100878" e_stop="100795" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100608" e_stop="100506" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100401" e_stop="100061" e_length="341"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.097">
            <gDNA_intron_boundary i_start="100060" i_stop="99793" i_length="268"/>
          </intron>
          <exon e_serial="6" e_score="0.722">
            <gDNA_exon_boundary e_start="99792" e_stop="99757" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101206" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101018" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100394" stop="100061"/>
              <exon start="99792" stop="99757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGA : ATATAATTAAAAAAAGAAATTAAGTAAAAACAAAAA</gDNA_template>
            <first_frame> V  A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S   : N  I  I  K  K  R  N  *  V  K  T  K  </first_frame>
            <second_frame>  *  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  :  I  *  L  K  K  E  I  K  *  K  Q  K </second_frame>
            <third_frame>   S  P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  E :   Y  N  *  K  K  K  L  S  K  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101202" stop="101152"/>
                    <exon start="101079" stop="100984"/>
                    <exon start="100878" stop="100795"/>
                    <exon start="100608" stop="100506"/>
                    <exon start="100401" stop="100319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="111742" PGL_stop="108292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111742" e_stop="111445"/>
            <exon e_start="111350" e_stop="111212"/>
            <exon e_start="110721" e_stop="110529"/>
            <exon e_start="109492" e_stop="109382"/>
            <exon e_start="108953" e_stop="108891"/>
            <exon e_start="108801" e_stop="108671"/>
            <exon e_start="108591" e_stop="108292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.448" e_score="1.000"/>
          <exon-intron don_prob="0.537" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111742" e_stop="111445" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111350" e_stop="111212" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110721" e_stop="110529" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109492" e_stop="109382" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.448">
            <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108953" e_stop="108891" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.537" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108801" e_stop="108671" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108670" i_stop="108592" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108591" e_stop="108292" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111742" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108671"/>
              <exon start="108591" stop="108292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111736" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111733" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111717" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111707" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111674" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111670" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111667" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111667" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111665" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111662" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111661" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111661" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111336" stop="111212"/>
              <exon start="110721" stop="110641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC : CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA : AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG : AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG : GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG : GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG : TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</gDNA_template>
            <first_frame> T  K  D  K  I  S  N  I  C  I  C  R  G  E  I  V  R  F  V  V  W  Q  M  A  M  A  A  A  S  W  A  S  S  S  S  F  T  R  F  L  R  P  L  L  S  R  N  S  S  P  S  P  I  S  Y  S  L  H  R  Y  K  S  A  N  C  L  F  F  S  A  S  S  N  K  P  P  K  L  A  V  Y  A  Q  A  R  R  V  L  S  S  K  T  K  G  D  E  I  A  T   : P  A  D  L  S  F  V  V  P  L  K  I  V  E  Y  P  D  P  I  L  R  A  K  N  K  R  I  D  N  F  D  A  N  L  K  K  L  V  D  E  M  F  D  I  M  Y  K :   T  D  G  I  G  L  S  A  P  Q  V  G  M  N  V  Q  L  M  V  F  N  A  A  G  E  R  G  E  G  E  E  I  V  L  V  N  P  R  V  S  R  Y  S  R  R  I  I  P  Y  E  E  G  C  L  S  F  P  M  I  H  G  D  V  K  :  R  P  E  S  V  K  V  D  A  Q  D  I  N  G  T  R  F  E  I  S  L  S  A  L  P  A  R  V  F  Q  H  E  F  D  H  L  Q  :  G  V  L  F  F  D  K  M  T  D  E  V  L  D  T  I  R  E  K  L  V  :  A  L  E  K  K  Y  E  D  R  T  G  L  P  T  P  E  S  I  N  T  R  K  I  K  K  A  A  V  G  F  G  K  S  *  I  Y  W  D  L  *  N  L  L  S :   I  C  M  M  K  H  K  M  G  L  P  A  F  A  E  L  W  Y  M  P  L  I  *  T  L  V  L  C  E  T  S  Q  K  C  G  L  *  G  L  S  L  Y  *  Y  C  S  V  *  E  *  *  G  Y  H  R  N  L  Y  G  K  R  T  V  K  Y  I  *  S  N  I  E  H  Q  V  C  R  L  T  L  G  L  L  *  F  S  V  E  K  N  N  S  R  E  V  P  *  V  P  Q   </first_frame>
            <second_frame>  R  R  T  K  L  V  I  F  A  S  V  E  V  K  L  S  V  L  L  C  G  K  W  Q  W  L  P  Q  V  G  H  L  L  L  R  S  L  A  F  S  G  L  S  S  V  G  T  R  L  P  P  L  S  V  T  V  F  I  D  I  N  Q  L  T  V  Y  F  S  P  Q  A  V  I  N  L  Q  N  *  L  F  M  L  K  L  G  E  F  Y  L  P  K  P  K  E  M  K  *  Q  L  :  L  L  T  *  A  S  W  F  H  *  K  L  W  S  I  Q  T  R  F  *  E  R  R  I  R  G  L  T  I  L  T  L  I  *  R  S  *  L  M  K  C  S  I  L  C  T   : K  L  M  A  L  G  C  L  H  H  K  L  E  *  M  F  N  *  W  Y  L  M  Q  P  V  N  V  E  R  G  R  R  L  F  S  S  I  H  V  S  V  D  I  L  G  G  L  Y  L  M  K  K  V  A  Y  L  F  Q  *  Y  M  V  M  L  R :   D  Q  S  Q  L  R  L  T  H  R  T  L  M  V  Q  G  L  R  *  A  C  L  L  F  Q  H  E  S  S  N  M  N  L  I  T  Y  R :   E  F  F  S  L  T  K  *  L  T  K  S  W  T  P  F  V  K  N  *  W :   R  *  K  R  N  M  K  I  G  L  G  C  Q  P  L  K  A  *  I  H  E  K  *  R  R  L  L  L  D  L  A  N  H  E  F  T  G  I  Y  E  I  F  S   : V  F  V  *  *  S  T  K  W  D  C  Q  L  L  L  N  F  G  I  C  H  *  F  R  H  L  C  F  V  K  L  A  K  S  V  A  S  E  V  Y  P  C  T  D  T  A  L  F  R  N  D  R  V  T  T  E  I  C  M  E  K  E  L  L  S  T  F  D  Q  I  L  N  T  K  F  V  V  *  H  L  G  C  C  S  S  V  W  R  K  T  T  Q  E  K  F  H  K  F  P  S  </second_frame>
            <third_frame>   E  G  Q  N  *  *  Y  L  H  L  *  R  *  N  C  P  F  C  C  V  A  N  G  N  G  C  R  K  L  G  I  F  F  F  V  H  S  L  S  P  A  S  P  Q  S  E  L  V  S  L  P  Y  Q  L  Q  S  S  S  I  *  I  S  *  L  F  I  F  L  R  K  Q  *  *  T  S  K  I  S  C  L  C  S  S  *  A  S  F  I  F  Q  N  Q  R  R  *  N  S  N  S :   C  *  L  E  L  R  G  S  I  E  N  C  G  V  S  R  P  D  F  K  S  E  E  *  E  D  *  Q  F  *  R  *  F  E  E  V  S  *  *  N  V  R  Y  Y  V  Q  :  N  *  W  H  W  A  V  C  T  T  S  W  N  E  C  S  T  N  G  I  *  C  S  R  *  T  W  R  G  G  G  D  C  S  R  Q  S  T  C  Q  *  I  F  *  E  D  Y  T  L  *  R  R  L  L  I  F  S  N  D  T  W  *  C  *   : E  T  R  V  S  *  G  *  R  T  G  H  *  W  Y  K  V  *  D  K  L  V  C  S  S  S  T  S  L  P  T  *  I  *  S  P  T   : G  S  S  F  L  *  Q  N  D  *  R  S  P  G  H  H  S  *  K  I  S   : G  A  R  K  E  I  *  R  *  D  W  V  A  N  P  *  K  H  K  Y  T  K  N  K  E  G  C  C  W  I  W  Q  I  M  N  L  L  G  S  M  K  S  S  Q  :  Y  L  Y  D  E  A  Q  N  G  I  A  S  F  C  *  T  L  V  Y  A  I  N  L  D  T  C  A  L  *  N  *  P  K  V  W  P  L  R  F  I  L  V  L  I  L  L  C  L  G  M  I  G  L  P  Q  K  F  V  W  K  K  N  C  *  V  H  L  I  K  Y  *  T  P  S  L  S  F  N  T  W  V  V  V  V  Q  C  G  E  K  Q  L  K  R  S  S  I  S  S  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111742" stop="111445"/>
                    <exon start="111350" stop="111212"/>
                    <exon start="110721" stop="110529"/>
                    <exon start="109492" stop="109382"/>
                    <exon start="108953" stop="108891"/>
                    <exon start="108801" stop="108700"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKDKISNICICRGEIVRFVVWQMAMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="120997" PGL_stop="123641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122116" e_stop="123414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="122116" e_stop="123414" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122116" stop="122840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122116" stop="122838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122116" stop="122790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122117" stop="122798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122117" stop="122626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122117" stop="122470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122481" stop="123097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122884" stop="123414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTCTTCTTGTGATAAACTCAAAAAATAAAATAAGAAACGT</gDNA_template>
            <first_frame> F  D  L  T  V  E  K  S  L  S  L  I  M  *  S  I  F  Y  P  Y  *  L  T  C  T  N  Y  K  I  K  T  C  H  P  Y  I  K  F  C  Q  F  I  I  L  S  S  Y  R  Y  R  *  N  K  K  I  *  V  L  I  Q  P  P  *  L  V  K  Q  G  Q  L  F  D  R  N  L  A  F  H  Y  Y  H  *  I  *  H  M  N  L  S  F  *  T  F  A  F  *  V  F  Q  I  C  Y  N  I  S  L  I  Y  M  H  F  T  H  V  *  K  T  K  I  I  Y  F  F  I  L  S  I  Y  I  K  K  F  K  K  *  L  R  S  R  F  Y  Q  M  K  N  D  K  K  Q  R  L  A  N  S  F  D  *  S  R  R  I  T  Y  C  F  G  S  S  Q  K  T  R  G  P  S  C  T  L  D  V  F  S  V  Y  R  K  *  Y  L  K  *  K  K  I  R  K  N  Y  V  *  Y  G  E  S  H  F  P  S  K  Y  *  K  V  I  C  W  Y  A  C  I  *  L  L  K  G  D  F  F  S  F  K  N  L  S  L  *  S  N  F  F  H  N  F  R  I  E  N  M  R  *  L  S  F  E  Q  L  S  V  I  P  L  Y  I  *  Q  N  I  E  T  G  *  N  H  F  P  L  R  I  V  *  V  M  Y  I  *  I  K  F  D  M  I  T  H  K  *  K  E  *  P  F  T  I  N  *  I  E  L  I  M  *  N  I  G  I  Y  N  *  N  M  H  V  Y  K  Q  W  D  F  K  Y  Q  P  Q  N  M  Y  T  T  S  I  L  Y  Q  K  L  N  V  T  *  K  F  N  F  N  I  I  *  N  K  *  F  S  F  I  S  Y  L  V  S  *  F  H  Y  T  Q  R  L  K  N  E  K  K  I  I  C  D  L  K  Y  N  *  *  C  I  F  *  I  L  L  S  *  I  Y  Q  E  K  Y  *  N  *  N  T  Y  *  I  Y  I  *  K  N  H  S  S  C  D  K  L  K  K  *  N  K  K  R </first_frame>
            <second_frame>  L  I  *  Q  S  K  N  L  *  A  *  S  C  K  V  Y  S  I  H  I  N  *  H  A  Q  I  T  K  L  K  H  V  T  P  T  L  N  F  V  N  L  L  F  S  L  P  I  D  I  G  K  I  K  K  Y  R  S  S  F  S  H  H  N  *  *  S  K  D  N  C  S  T  G  I  W  P  S  I  I  T  I  E  Y  D  I  *  I  *  V  F  E  L  L  L  F  E  F  F  K  Y  V  I  I  S  P  *  Y  I  C  T  L  H  M  C  K  K  Q  K  L  F  I  F  S  Y  Y  Q  Y  I  *  K  N  L  K  N  N  Y  G  L  G  S  I  K  *  K  M  I  R  S  K  G  L  Q  I  A  L  I  E  V  D  G  *  L  I  V  L  V  H  H  K  K  Q  G  V  L  L  V  P  *  M  F  L  V  Y  I  E  N  N  I  *  N  R  K  K  F  V  K  I  M  F  D  T  E  K  V  I  F  Q  V  S  I  R  K  S  F  A  G  M  H  V  F  N  C  *  K  G  I  F  F  L  S  K  T  S  L  Y  N  P  I  F  F  I  I  L  G  S  R  I  *  G  N  Y  H  L  S  N  S  R  L  S  L  S  I  Y  S  K  T  L  K  L  V  K  I  T  S  P  *  G  *  F  K  L  C  I  Y  K  L  S  L  I  *  *  L  T  N  R  K  N  N  L  L  Q  S  I  K  L  S  *  *  C  K  I  S  V  Y  I  T  E  I  C  M  Y  T  S  S  G  T  S  N  I  S  H  R  T  C  I  Q  P  R  F  F  T  K  N  *  T  *  L  K  S  L  I  S  I  *  S  E  I  S  S  F  H  S  F  H  I  *  C  L  N  F  T  I  H  K  G  *  R  M  K  R  R  *  S  V  I  L  N  I  I  N  N  V  Y  F  K  F  Y  Y  L  K  F  I  R  K  N  I  E  I  E  I  L  I  K  Y  I  Y  K  K  T  T  L  L  V  I  N  S  K  N  K  I  R  N   </second_frame>
            <third_frame>   *  F  D  S  R  K  I  F  K  L  N  H  V  K  Y  I  L  S  I  L  I  N  M  H  K  L  Q  N  *  N  M  S  P  L  H  *  I  L  S  I  Y  Y  S  L  F  L  *  I  *  V  K  *  K  N  I  G  P  H  S  A  T  I  I  S  K  A  R  T  I  V  R  Q  E  F  G  L  P  L  L  P  L  N  M  T  Y  E  F  K  F  L  N  F  C  F  L  S  F  S  N  M  L  *  Y  L  L  N  I  Y  A  L  Y  T  C  V  K  N  K  N  Y  L  F  F  H  I  I  N  I  Y  K  K  I  *  K  I  I  T  V  S  V  L  S  N  E  K  *  *  E  A  K  A  C  K  *  L  *  L  K  *  T  D  N  L  L  F  W  F  I  T  K  N  K  G  S  F  L  Y  L  R  C  F  *  C  I  S  K  I  I  F  E  I  E  K  N  S  *  K  L  C  L  I  R  R  K  S  F  S  K  *  V  L  E  S  H  L  L  V  C  M  Y  L  T  V  K  R  G  F  F  F  F  Q  K  P  L  F  I  I  Q  F  F  S  *  F  *  D  R  E  Y  E  V  I  I  I  *  A  T  L  G  Y  P  S  L  Y  I  A  K  H  *  N  W  L  K  S  L  P  L  E  D  S  L  S  Y  V  Y  I  N  *  V  *  Y  D  N  S  Q  I  E  R  I  T  F  Y  N  Q  L  N  *  A  D  N  V  K  Y  R  Y  I  *  L  K  Y  A  C  I  Q  A  V  G  L  Q  I  S  A  T  E  H  V  Y  N  L  D  S  L  P  K  I  K  R  D  L  K  V  *  F  Q  Y  N  L  K  *  V  V  F  I  H  F  I  F  S  V  L  I  S  L  Y  T  K  V  K  E  *  K  E  D  N  L  *  S  *  I  *  L  I  M  Y  I  L  N  F  I  I  L  N  L  S  G  K  I  L  K  L  K  Y  L  L  N  I  Y  I  K  K  P  L  F  L  *  *  T  Q  K  I  K  *  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121006" e_stop="121188"/>
            <exon e_start="121263" e_stop="121616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121006" e_stop="121188" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121263" e_stop="121616" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121006" stop="121188"/>
              <exon start="121263" stop="121616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG : GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAAT</gDNA_template>
            <first_frame> F  S  S  H  P  I  P  L  L  F  F  I  I  *  K  K  W  I  K  E  H  V  I  L  K  M  L  K  L  G  K  V  L  G  L  W  K  K  I  *  F  S  S  I  T  L  L  I  M  V  K  V  F  G  I  P  S  L  D  P  L  :  V  *  S  V  L  E  K  V  V  D  L  D  G  L  I  I  S  D  L  M  F  G  G  E  I  L  H  R  R  N  N  C  *  S  W  N  Y  M  P  S  G  E  T  G  E  L  I  S  F  S  S  *  G  F  D  N  *  I  K  *  *  N  Y  I  K  E  N  L  E  N  C  R  N  F  S  F  I  F  L  K  M  K  N  K  K  N  L  P  C  V  C  M  C  W  M  D  K  E  E  L  S  Q  N  L  L  E  L  D  L  T  S  *  K  R  V  M  G  N </first_frame>
            <second_frame>  F  L  H  I  P  F  L  F  S  S  L  L  Y  K  K  N  G  *  K  N  M  *  F  S  R  C  *  S  *  E  R  S  L  D  Y  G  R  R  F  D  S  H  Q  L  H  C  *  S  W  *  R  C  L  E  F  P  R  S  I  R  W :   F  E  A  Y  W  K  K  L  *  T  *  M  A  *  L  S  P  T  *  C  S  E  G  K  Y  Y  T  G  G  T  I  V  D  H  G  T  T  C  Q  V  G  K  P  V  S  *  F  L  F  L  A  R  V  L  I  I  K  *  N  D  E  I  I  *  K  K  I  W  K  I  V  E  I  S  P  S  F  F  *  K  *  K  I  K  K  I  S  H  V  F  V  C  V  G  W  I  K  R  N  C  P  K  I  S  *  N  *  I  *  H  H  E  R  E  *  W  G   </second_frame>
            <third_frame>   F  F  T  S  H  S  S  S  L  L  Y  Y  I  K  K  M  D  K  R  T  C  D  S  Q  D  V  E  V  R  K  G  P  W  T  M  E  E  D  L  I  L  I  N  Y  I  A  N  H  G  E  G  V  W  N  S  L  A  R  S  A   : G  L  K  R  T  G  K  S  C  R  L  R  W  L  N  Y  L  R  P  D  V  R  R  G  N  I  T  P  E  E  Q  L  L  I  M  E  L  H  A  K  W  G  N  R  *  V  D  F  F  F  *  L  G  F  *  *  L  N  K  M  M  K  L  Y  K  R  K  F  G  K  L  *  K  F  L  L  H  F  F  K  N  E  K  *  K  K  S  P  M  C  L  Y  V  L  D  G  *  R  G  I  V  P  K  S  L  R  T  R  F  D  I  M  K  E  S  D  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121008" stop="121188"/>
                    <exon start="121263" stop="121396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTSHSSSLLYYIKKMDKRTCDSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120997" e_stop="121188"/>
            <exon e_start="121263" e_stop="121392"/>
            <exon e_start="123564" e_stop="123641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.932"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.977"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="120997" e_stop="121188" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="121263" e_stop="121392" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121393" i_stop="123563" i_length="2171"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="123564" e_stop="123641" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120997" stop="121188"/>
              <exon start="121263" stop="121392"/>
              <exon start="123564" stop="123641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG : GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCG : GTGGTCGAAAATTGCAAAACATTTACCTGGTAGAACAGATAATGAGATAAAGAACTTATGGAGGACAAGAATTCAAAA</gDNA_template>
            <first_frame> K  K  L  F  S  S  H  P  I  P  L  L  F  F  I  I  *  K  K  W  I  K  E  H  V  I  L  K  M  L  K  L  G  K  V  L  G  L  W  K  K  I  *  F  S  S  I  T  L  L  I  M  V  K  V  F  G  I  P  S  L  D  P  L  :  V  *  S  V  L  E  K  V  V  D  L  D  G  L  I  I  S  D  L  M  F  G  G  E  I  L  H  R  R  N  N  C  *  S  W  N  Y  M  P  S  G  E  T   : G  G  R  K  L  Q  N  I  Y  L  V  E  Q  I  M  R  *  R  T  Y  G  G  Q  E  F  K  </first_frame>
            <second_frame>  K  N  F  F  L  H  I  P  F  L  F  S  S  L  L  Y  K  K  N  G  *  K  N  M  *  F  S  R  C  *  S  *  E  R  S  L  D  Y  G  R  R  F  D  S  H  Q  L  H  C  *  S  W  *  R  C  L  E  F  P  R  S  I  R  W :   F  E  A  Y  W  K  K  L  *  T  *  M  A  *  L  S  P  T  *  C  S  E  G  K  Y  Y  T  G  G  T  I  V  D  H  G  T  T  C  Q  V  G  K  P  :  V  V  E  N  C  K  T  F  T  W  *  N  R  *  *  D  K  E  L  M  E  D  K  N  S  K </second_frame>
            <third_frame>   K  T  F  F  F  T  S  H  S  S  S  L  L  Y  Y  I  K  K  M  D  K  R  T  C  D  S  Q  D  V  E  V  R  K  G  P  W  T  M  E  E  D  L  I  L  I  N  Y  I  A  N  H  G  E  G  V  W  N  S  L  A  R  S  A   : G  L  K  R  T  G  K  S  C  R  L  R  W  L  N  Y  L  R  P  D  V  R  R  G  N  I  T  P  E  E  Q  L  L  I  M  E  L  H  A  K  W  G  N  R :   W  S  K  I  A  K  H  L  P  G  R  T  D  N  E  I  K  N  L  W  R  T  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120999" stop="121188"/>
                    <exon start="121263" stop="121392"/>
                    <exon start="123564" stop="123639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFFFTSHSSSLLYYIKKMDKRTCDSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNLWRTRIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="132491" PGL_stop="134840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132491" e_stop="132619"/>
            <exon e_start="133407" e_stop="133458"/>
            <exon e_start="133716" e_stop="133796"/>
            <exon e_start="134722" e_stop="134840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.909" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="132491" e_stop="132619" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="132620" i_stop="133406" i_length="787"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133407" e_stop="133458" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.992">
            <gDNA_intron_boundary i_start="133459" i_stop="133715" i_length="257"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133716" e_stop="133796" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.988">
            <gDNA_intron_boundary i_start="133797" i_stop="134721" i_length="925"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134722" e_stop="134840" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132491" stop="132619"/>
              <exon start="133407" stop="133458"/>
              <exon start="133716" stop="133796"/>
              <exon start="134722" stop="134840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGGAAATGGGTAGGGCCTTTGTGTATGTAATATTGGGAGGAGGAGTTGCTGCTGGTTATGCAGCTCATGAATTTGTTAAACGAGGTGTCTCTCATGGCGAACTATGCATCATCTCTGAAGAACCT : GTTGCTCCTTATGAACGACCTGCATTAAGCAAGGGTTATTTACTACCAGAAG : ATCCTGCACGTCTGCCTGCTTTTCATTGTTGTGTTGGTTCAAATGAGGAAAGGTTGACACCGAAGTGGTACAAGGAAAACG : GCATTGAGCTGGTCCTTGGAACTCGTGTAAAATCAGCTGATGTGAGAAGGAAGACATTGTTGACCGCAACCGGTGAAACCATAACCTACAAGATTCTCATAGTGGCAACTGGTGCTCGG</gDNA_template>
            <first_frame> K  V  E  M  G  R  A  F  V  Y  V  I  L  G  G  G  V  A  A  G  Y  A  A  H  E  F  V  K  R  G  V  S  H  G  E  L  C  I  I  S  E  E  P  :  V  A  P  Y  E  R  P  A  L  S  K  G  Y  L  L  P  E   : D  P  A  R  L  P  A  F  H  C  C  V  G  S  N  E  E  R  L  T  P  K  W  Y  K  E  N   : G  I  E  L  V  L  G  T  R  V  K  S  A  D  V  R  R  K  T  L  L  T  A  T  G  E  T  I  T  Y  K  I  L  I  V  A  T  G  A  R </first_frame>
            <second_frame>  K  W  K  W  V  G  P  L  C  M  *  Y  W  E  E  E  L  L  L  V  M  Q  L  M  N  L  L  N  E  V  S  L  M  A  N  Y  A  S  S  L  K  N  L :   L  L  L  M  N  D  L  H  *  A  R  V  I  Y  Y  Q  K  :  I  L  H  V  C  L  L  F  I  V  V  L  V  Q  M  R  K  G  *  H  R  S  G  T  R  K  T  :  A  L  S  W  S  L  E  L  V  *  N  Q  L  M  *  E  G  R  H  C  *  P  Q  P  V  K  P  *  P  T  R  F  S  *  W  Q  L  V  L   </second_frame>
            <third_frame>   S  G  N  G  *  G  L  C  V  C  N  I  G  R  R  S  C  C  W  L  C  S  S  *  I  C  *  T  R  C  L  S  W  R  T  M  H  H  L  *  R  T   : C  C  S  L  *  T  T  C  I  K  Q  G  L  F  T  T  R  R :   S  C  T  S  A  C  F  S  L  L  C  W  F  K  *  G  K  V  D  T  E  V  V  Q  G  K  R :   H  *  A  G  P  W  N  S  C  K  I  S  *  C  E  K  E  D  I  V  D  R  N  R  *  N  H  N  L  Q  D  S  H  S  G  N  W  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132491" stop="132619"/>
                    <exon start="133407" stop="133458"/>
                    <exon start="133716" stop="133796"/>
                    <exon start="134722" stop="134840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVEMGRAFVYVILGGGVAAGYAAHEFVKRGVSHGELCIISEEPVAPYERPALSKGYLLPEDPARLPAFHCCVGSNEERLTPKWYKENGIELVLGTRVKSADVRRKTLLTATGETITYKILIVATGAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 269 chains have been computed
$ 
$ memory statistics:
$ 800240 bytes spliced alignments in total
$ 148 spliced alignments have been stored
$ 5407 bytes was the average size of a spliced alignment
$ 27480 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1962 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 296 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:05:17
-->
