<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:05:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596764" ref_strand="+" ref_description="SGN-U596764 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|18402963|ref|NP_564562.1| (e_value=3e-27) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G50170.1 (e_value=3e-29)  Symbol: None | expressed protein, similar to Cbi protein (GI:3724039) (Bacillus megaterium); similar to YlnE protein (GI:2462961) (Bacillus subtilis); similar to NirR (GI:4433637) (Staphylococcus carnosus) | chr1:18585692-18587392 FORWARD | Aliases:... ; ">
      <seq>attgggaagaataaccgaaccgttgttggaagaaggtgaatggattcgttgtctttacaatctcatcttagtttgaggaggtaatttatagttcttgtgttctcctgattcttcatgttgtaattatcatagaagttttattcttgattagtattagtagttcataaggcatatttaactgatagttcgtatgattaaattgatgttttctgtgttgttgaaatgatgaaagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatggctacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtaaaaaagagtccaatctcatgctaattttgatgataactgtcagatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcaaaaccatctatcaaagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggtatctttctttttatgtagtctgaattctcaagttgtgatagctgatgtagaatttgccgatgatgtatagtgctaggttttgacctgatatcagagttaaagccaaggaccttggtgaaaaggctttgatctttcacttttcaggatattccttcattaacagctgaagctgcaaaggaacatcccggagtaccatatgtcattacagcacctcttggccttcatgaattacttgttgatgttgtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3215" stop="5267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3511" g_stop="3951" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3952" i_stop="4027" i_length="76">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.329" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="4108" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="522" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4613" g_stop="4962" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="872" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U596764" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3511" e_stop="3951"/>
          <exon e_start="4028" e_stop="4108"/>
          <exon e_start="4613" e_stop="4962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT</genome_strand>
        <mrna_strand>ATTGGGAAGAATAACCGAACCGTTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAAAAAAGAGTCCAATCTCATGCTAA............................................................................TTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAAAACCATCTATCAAAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAACATCCCGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570104" ref_strand="+" ref_description="SGN-U570104 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147820191|emb|CAN60425.1| (e_value=2e-62) hypothetical; (*ATH) AT1G50170.1 (e_value=8e-64)  Symbol: None | expressed protein, similar to Cbi protein (GI:3724039) (Bacillus megaterium); similar to YlnE protein (GI:2462961) (Bacillus subtilis); similar to NirR (GI:4433637) (Staphylococcus carnosus) | chr1:18585692-18587392 FORWARD | Aliases:... ; (*SWP) sp|P61817|SIRB_BACME (e_value=2e-14) Sirohydrochlorin ferrochelatase OS=Bacillus megaterium GN=sirB; ">
      <seq>ggaagaataaccgaagcggtgttggaagaaggtgaatggattcgttgtctttacaatctcatcttagtttgaggagctcaaccagtacatacccagctagaggaccaggaattgcagttcctgaatttgtaaaattgcttaagggtccttcaaaatccagatatttacctcagaggtattgtatggctacttcaagcagggaggggttgaaggggatagaagaaggcgacggagtgataattgtggatcatgggtcccgtagaaaagagtccaatctcatgctaaatggatttgtagcaatgtttagagagagaaccaaataccccattgtggagcctgcacacatggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggatattccttcattaacagctgaagctgcaaaggagcatccaggagtaccatatgtcattacagcacctcttggccttcatgaattacttgttgatgttgtgaatgataggatcaatcattgcctaagtcatattgccgggaaagcagatgagtgttcagtttgtgctggaactggaaaatgtcagctccgccagtgacatacttgtgaagcttagcaagactttgttatgtagagagactttgttacctatgccagttgacttattagggtctgaatgctgagttactgcctcttggcagtaggttcaattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3215" stop="6039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3515" g_stop="3590" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3743" g_stop="3951" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="285" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4047" g_stop="4108" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="347" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4613" g_stop="4723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="458" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4870" g_stop="4962" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="551" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5517" g_stop="5739" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="774" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U570104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3515" e_stop="3590"/>
          <exon e_start="3743" e_stop="3951"/>
          <exon e_start="4047" e_stop="4108"/>
          <exon e_start="4613" e_stop="4723"/>
          <exon e_start="4870" e_stop="4962"/>
          <exon e_start="5517" e_stop="5739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAAGTTAGTTTCTGGCACCCTTCATTTTTTTTTTTCAATTTTGTTGCTGATTTATCACAAGTTTTGCTTATAGTTGTAGTTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATGGTAAGAATGTTTTATCCCCTTCTTTGTATGATTTTTGTTGTAGAGCTTGCTGTATGATCCGTGGTTTCTTGATTCCTTATCTGTTTATCTTTGTTTTTGTACCCTGTTTGGGATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTTGTAAGACTTCTTTTTTTGCTTGCTTTACTTTCTCACTATTTTTCTTTTCATTTACATATGACGTCCAACAATATTGAAACCTTAGTTTATTCCTACTCCGCTGTTTGCATTCAAACTTTTGCCCTTATAATTGCTCAAACTCCCCTCTTTCCTTAGTCACCTGGCCCTATAGCAGTCCTTGCCTAACTAGGGCTTTTGTTATTTTAATTGGTTTGCAGTTGCCTTTTCTTTCCTAGGCTATTGACACTTGTATCAGAATTCATTTTTACTGAATACTTTGTTCAATGTGAGTTTCTTTTGTGACAATAGCCTTACAGTATCCCATTTTAATCCCAACACTCTTATTGGTCAAGTAACTAGCAAACTTTTCTTTCATGGAAAGACCATGATGGTCAGAGGTTTTGGCATATTGACATCCTTCCTTGATAAAGCTGTTTGGTTGAAATTTTAATCCTAGAAGGTTGATTTAAAAACAGCTAAATGTTTTCTCATTGAAATTCTTCTATGGAAAGTTTGTAGGTTAAAATTCTAATTCTTGAAGATTGTTATTACAGGATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCC</genome_strand>
        <mrna_strand>GGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAG........................................................................................................................................................CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA...............................................................................................ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG..................................................................................................................................................GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596763" ref_strand="+" ref_description="SGN-U596763 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115445659|ref|NP_001046609.1| (e_value=7e-12) Os02g0296800; (*ATH) AT1G50170.1 (e_value=4e-13)  Symbol: None | expressed protein, similar to Cbi protein (GI:3724039) (Bacillus megaterium); similar to YlnE protein (GI:2462961) (Bacillus subtilis); similar to NirR (GI:4433637) (Staphylococcus carnosus) | chr1:18585692-18587392 FORWARD | Aliases:... ; ">
      <seq>gattaaaatactgtcgaggaaagaaactgcagtgcagaagggtaagaaatgagaagtcttgcaatatgtttggatgttaaagagcaaaagcaaagaaagaaaacaaaagcatacaccttttcagaaaagaaacaatagaaatgatataaatttgcgtatgagaaatcatcttaaaatatctcatgagaaaatctggcaaaataaaacaaagattgataggataaagggatccctttaaggttggatggttgggaagtggcaataggactaagaatgtgctaggagtaagaaaatcctaatatttgcatgttaatatctctattttcctttcttttaatactctcaaaaagttggaactttcattttgctttgtatatcttttatgacatttaggagctagcagaaccatctatcagagacgcatttagtttatgcgttcaacaaggagcacgtcgagttattgtgagcccctttttcctttctcctggacgacattggaaccaggtatctttctttttatgtagtctgaattctcaagttgtgatagctgatgtagaatttgccgatgatgtatagtgctaggttttgacctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="3920" stop="5115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4220" g_stop="4815" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U596763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4220" e_stop="4815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</genome_strand>
        <mrna_strand>GATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570660" ref_strand="+" ref_description="SGN-U570660 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>cgttttctttttctttttctttgtcatattcttcagattattaaatttagtcgaaccacccacacggaacttcgtcactccgaaaaacactttcataaaatgaaattccgaaatccagaattttcagcaatttgagaaacaacaaaaatcactttatttcactccaaagtattcaaatttgtattcatggttaactgcaaattttcaagtttcaaatatcatttttgtactttgatacaatgaaatatggccaaaaacgcatagtaacttgaaatcaagcattttactgcatcaaacgatcatctactacagcaaatataaccatagaaaatgaagaagaaggagaaaaaacagaggaagggaagaagcaaaccttagcaagcagatcggtgtaagacggttacgcaaaataacagggatacgagaaaaaaaggtttttggctgaattctagaagccaccgaaaagggtatatttggtaaaacgagctcactctatttatggcggtctacacgagaatggagaaccatctagtattttgatgaaatttgactaccatttgtatggccatttggataaatttttacgagtaattttcttaaatagtcccaaaaaatcatttaataatattattaatatttgttttatgattataaattatttaattttattttttttaaaaaaatatatttgacacacaaaaaaaatattgtcttttctattagaatgttatgtcacttttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="22019" stop="20676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21719" g_stop="20976" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U570660" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21719" e_stop="20976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTCTTTTTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTA-TTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAAT</genome_strand>
        <mrna_strand>CGTTTTCTTTTTCTTTTTCTTTGTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTATTTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570659" ref_strand="+" ref_description="SGN-U570659 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|117107|sp|P19173|COX5C_IPOBA (e_value=3e-22) Cytochrome; (*ATH) AT2G47380.1 (e_value=8e-22) | Symbol: None | cytochrome c oxidase subunit Vc family protein / COX5C family protein, contains Pfam profile: PF05799 cytochrome c oxidase subunit Vc (COX5C) | chr2:19448025-19449123 FORWARD | Aliases: T8I13.22; (*SWP) sp|P19173|COX5C_IPOBA (e_value=2e-23) Cytochrome c oxidase polypeptide Vc OS=Ipomoea batatas GN=COX5C; ">
      <seq>gctagaattcagccaaaaacctttttttctcgtatccctgttattttgcgtaaccgtcttacaccgatctgcttgctaagaagggaaaaatggcaggttcccatattgcacatgctgcatacaagggtccaagtgtagtgaaggagattatgatagggattgctcttggaatggttgccggaggtttgtggaagaagcaccattggaacaaccagaggagaactaaggaattctatgatctgcttgagaaaaatgagatcagtgttgtggtgaatgaccagtaactgaaagtctggtcagatactattcgaattttaatgtgttgttttctcacttggaattataatgaataatgatagttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="20968" stop="22483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21267" g_stop="21346" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21347" i_stop="21896" i_length="550">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.321" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21897" g_stop="22183" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="367" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U570659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21267" e_stop="21346"/>
          <exon e_start="21897" e_stop="22183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAGGTTTGCTTCTTCCCTTCCTCTGTTTTTTCTCCTTCTTCTTCATTTTCTATGGTTATATTTGCTGTAGTAGATGATCGTTTGATGCAGTAAAATGCTTGATTTCAAGTTACTATGCGTTTTTGGCCATATTTCATTGTATCAAAGTACAAAAATGATATTTGAAACTTGAAAATTTGCAGTTAACCATGAATACAAATTTGAATACTTTGGAGTGAAATAAAGTGATTTTTGTTGTTTCTCAAATTGCTGAAAATTCTGGATTTCGGAATTTCATTTTATGAAAGTGTTTTTCGGAGTGACGAAGTTCCGTGTGGGTGGTTCGACTAAATTTAATAATCTGAAGAATATGAAAAAGAAAAAGAAAAAGAAAACGTCTCTTTAATATCCGGGAAGTCAAATTTGCTTTACGAGAATATACACGAGTTGCTGAGGAAAGGGATTGAATGAAGGTAAAGGGGGAGAGGGTTATTCAATGATTTGTTTACTGTTGCTACTTTTTGTTTTTTTCTCTTACATTGGAGCTTCGTGGTTGACGCCTTTTCTTTAAAAGAAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTG</genome_strand>
        <mrna_strand>GCTAGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594199" ref_strand="+" ref_description="SGN-U594199 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tgcctattggtgttccaagagttgtattccgaaatcctggagatccaatttcatcttgggttgacatatagtgcgacctgtcagatatattaggtcatatggtatttccccgttctctcccccgaccgagatatcccccgtttcgcccaagaaagataaattgaatcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="22465" stop="23237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22765" g_stop="22937" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U594199" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22765" e_stop="22937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTATTGGTGTTCCAAGAGTTGTATTCCGAAATCCTGGAGATCCAATTTCATCTTGGGTTGAGATATAGTGCGACTTGTCAGAAATATTGGGTTATATGGTATTTCTCCGTTCTCTCCCCCGATCGAGATATCCCCCGTTTCGCCCAAGAAAGATAAATTGAATCATCAAA</genome_strand>
        <mrna_strand>TGCCTATTGGTGTTCCAAGAGTTGTATTCCGAAATCCTGGAGATCCAATTTCATCTTGGGTTGACATATAGTGCGACCTGTCAGATATATTAGGTCATATGGTATTTCCCCGTTCTCTCCCCCGACCGAGATATCCCCCGTTTCGCCCAAGAAAGATAAATTGAATCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567273" ref_strand="+" ref_description="SGN-U567273 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gagaagtttagtctcaaatgcactctataaacttgatgaatcatcatcttatgccaccaccactgagtccttaagtatgcaaagctcatcaactggaccacacaaaagtgatgaattccttttaaaagagtctgaaaatacgaaataattgcaaggacataatatagaaatggaagttttgggagattttttatcagtacattttttgtacagtaatagaattagtatgatttcatttttgaatttttggtgagtgataatacaagcaagtgtagacagaagcatagatactttatcattttcaaataggttcatgaattgcttaatgctaattcgtttgtcctggctttttgtcattatgaaatgctatcatataattaaattatgtggatatagccggttcatttggaccccattttgaactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="26394" stop="25369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26095" g_stop="25669" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U567273" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26095" e_stop="25669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACC</genome_strand>
        <mrna_strand>GAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563912" ref_strand="+" ref_description="SGN-U563912 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345433|emb|CAO14731.1| (e_value=4e-74) unnamed; (*ATH) AT5G40380.1 (e_value=7e-71) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr5:16169375-16172405 FORWARD | Aliases: MPO12.90, MPO12_90; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=6e-70) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42; ">
      <seq>gaggcttttgtgacctacaatttaaacttttcaaagaaatggtcccaggaagatgacttcgtttcataaattgtatttcttattttgagattttttatatataaaaggaaaaatcttctataaaagaaacacgaaatttagattaaatttatgaaagaatacaaaatcaattgacttttgtgagcctgttttgactttatcttctgcattttgtactgaaaaaaatgctgttattttcaggaataagcaaaggggtgatagtagctatagttcttggagtgacagctttcaccatgcttgctctctcagcggcttacacagctcgtaaaagatcattaaggcgaaaacgagcacgcattaatcttggcaaaatatcgaattcatacaagaagtcgagcttgaattttaaatatgaaaatcttgagaaggcaacaaactactttgatccttcaacaaaagtaggacaaggaggaaatggttctgtatacaaagggactctgcctaatgggaatgttattgcagttaagagactatttttcaatacaagacaatgggttgatgacttcttcaatgaggtcaatctcatccatggaattgaacacaaaaatcttgtcaagttgttgggttgcagcattgaaggccccgagagcctgctcgtatacaagtttgtgaccaataagagtctagatcaatacctctttgataaagacaaggtaaagattctaagatgggaagaacgtttccgtattatagttggaacagcacaaggcattgatttcctccatggaggttcagagatcagaatcatccatagggacatcaagagctcccatgtacttcttgatgaaaatcttgaagcaaaattgctgattttggacttgctcggtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="28292" stop="26448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27996" g_stop="27646" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27645" i_stop="27527" i_length="119">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27526" g_stop="27176" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="702" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27175" i_stop="26939" i_length="237">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26938" g_stop="26748" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="892" r_length="190" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U563912" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27996" e_stop="27646"/>
          <exon e_start="27526" e_stop="27176"/>
          <exon e_start="26938" e_stop="26748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAGGTATAGTTTGATGAAAAAAATAAAATAGTTTCGTAGCTTTACTGCTACGATTACTAACGTTCAATGACTATATTGTAACTTTAGAACTATTGTAACTTTTTTTGGTTGCATTGTTGCAGCACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTGGTAATTATCTTTCTTTCTTATTCCATACATAAAAGGGTGAGTTTAGAATTCAACTGTCAAGACATCTTTCTGGTAAAACCCAAAGTGACCAAAAGCTGAGGCCCCAAAGGTTGGGGCAGAGCGGAAAATACCCTGACAGTTGAACCTGGACTTTGACACAGCATTATTCTTACCTATACATTTCTATGTTGTGATAGTTATATACTTACTGATTGAGTTGTTGAACTTTTTTTGTAGATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTCTTGATGAAAATCTTGAAGCAAAAATTGCTGATTTTGGACTTGCTCGGTGTTTC</genome_strand>
        <mrna_strand>GAGGCTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAG.......................................................................................................................CACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACAAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTG.............................................................................................................................................................................................................................................ATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCCATGTACTTCTTGATGAAAATCTTGAAGC-AAAATTGCTGATTTTGGACTTGCTCGGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601680" ref_strand="+" ref_description="SGN-U601680 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345433|emb|CAO14731.1| (e_value=1e-14) unnamed; ">
      <seq>ttttgtttgttcgtatgcagtagcagcttgctcatgaaaattgagatgaatatatccagctcaaattttccacttgtaaattggatggttattttgttgctgaattttgctttaatttgtgaagccgatcctcgaatttcagaatctggacgaatatgcggcacgaacaggacaacagcggcgatcattattccccaatttgttaaactaatggaagttgtttcacaacgcgtgacggataacaattggggaaaccacggtgtaaattcaacaaatatatcaatttatgcattagcaaattgttatcaggatctaccacatcaggactgtcttctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="29730" stop="28791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29430" g_stop="29091" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U601680" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29430" e_stop="29091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTGTTCGTATGCAGTAGCAGCTTGCTCATGAAAATTGAGATGAATATATCCAGCTCAAATTTTCCACTTGTAAATTGGATGGTTATTTTGTTGCTGAATTTTGCTTTAATTTGTGAAGCCGATCCTCGAATTTCAGAATCTGGACTAATATGCGGCACGAACAGGACAACAGCGGCGATCATTATTCCCCAATTTGTTAAACTAATGGAAGTTGTTTCACAACGCGTGACGGATAACAATTGGGGAAACCACGGTGTAAATTCAACAAATATATCAATTTATGCATTAGCAAATTGTTATCAGGATCTACCACATCAGGACTGTCTTCTATGCT</genome_strand>
        <mrna_strand>TTTTGTTTGTTCGTATGCAGTAGCAGCTTGCTCATGAAAATTGAGATGAATATATCCAGCTCAAATTTTCCACTTGTAAATTGGATGGTTATTTTGTTGCTGAATTTTGCTTTAATTTGTGAAGCCGATCCTCGAATTTCAGAATCTGGACGAATATGCGGCACGAACAGGACAACAGCGGCGATCATTATTCCCCAATTTGTTAAACTAATGGAAGTTGTTTCACAACGCGTGACGGATAACAATTGGGGAAACCACGGTGTAAATTCAACAAATATATCAATTTATGCATTAGCAAATTGTTATCAGGATCTACCACATCAGGACTGTCTTCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600106" ref_strand="+" ref_description="SGN-U600106 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345435|emb|CAO14733.1| (e_value=2e-80) unnamed; (*ATH) AT5G14580.1 (e_value=3e-77)  Symbol: None | polyribonucleotide nucleotidyltransferase, putative, similar to Swiss-Prot:P05055 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Escherichia coli) | chr5:4697243-4703069 REVERSE | Alias... ; (*SWP) sp|A4IME3|PNP_GEOTN (e_value=1e-38) Polyribonucleotide nucleotidyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pnp; ">
      <seq>tgaaatcaaggattatcgtttattgactgatattctgggtctggaggatcatctgggtgacatggattttaagattgctggtacccgtaatggtgtaacggccatacaattagatattaaacctgctggaattcctttggatatcatatgtgagagtctagatcctgcacttaaagggaggcttcaaatcctcgagcacatggagcgtgagataagtgctccacgtattcaggataacatatattctcctcggctagttacgtcaaaatacagcaatgatgcacttcgtcgcttgattggtcctgttggtgctttgaagaggaaaattgaagatgaaacaggtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggagtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="41405" stop="38443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41105" g_stop="41069" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41068" i_stop="40197" i_length="872">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40196" g_stop="39977" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="257" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39976" i_stop="39885" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39884" g_stop="39801" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="341" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39800" i_stop="39260" i_length="541">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39259" g_stop="39180" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="421" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38855" g_stop="38743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="534" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U600106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41105" e_stop="41069"/>
          <exon e_start="40196" e_stop="39977"/>
          <exon e_start="39884" e_stop="39801"/>
          <exon e_start="39259" e_stop="39180"/>
          <exon e_start="38855" e_stop="38743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTGGTGAGGACTGTTGTTTCAATCTTTTTGAATGTTTGTCTTAGCTCTGTGAAGTTCAGTGAAGGGGACAAAAAAGAGGGAAAGAAGCATCTTCTAATGAATTCTCAAGGGATGAAAAAACAAACAAATTAGTTTCGGTAAATATCGTGTAGGCTTGGTGGTAAAATTTACCTTGTTCAGTATTCCAAATGGATATTAGGATTTGGATCTTTTTTTCAAGACAATAATTGGAAGCTCATAAACTATTGCTCTATACCGGCAGCTGGAGTAGGTTCAATTTATTTGGTCACCTTGAAAGTGTGCTTTAAAGTTGTGAAATCATCCGATCACTAAAGGCCTAGGCTTTAAGAGGTGTATCTTCTATTTAGCCAACACTTGCTTGCATAATTATGATTGTAATATGAAATTCTTGACTTCTCATATGACCTTTTATCTCCTCTTGGATTTCACCAAATATATGAAAACCTGCTATTTCTTGCTTTGGTATAAACTTAGATTCAACTGTTGTGTGTCTCCATTTGGTTCATGTTCTAGCTTGGTCTTGTGTTTTTGCATCCGTTTGACTTGAGAAGCCCCCAGTCTGAACCTTGTCTTTCTGCCTTACTTGCATTGGCATGAATAGATTTTACTTCACACCGGAAGTCCAGAACTATATGCTCATAAAACTTATGTCATTGAAAACTGCAAATCATGTAAACAAGAGTTATCAACTTCAAAACTTTACTTACCATCACCAATTGTATAGTCTATATTACTGCTCTTCCTCTGGCTTATTGGTTTAAGTTATATCCTAAGTTTCTTTTGTCTGAAGCTGGTCTCTATCTTTCTCTAAATTTGGTGCGAGTTTTACTTACCTGATTAAGTAACTCCTCTAGGGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAGGTAATTAGCTTCAGTCATTGATCTTATGTTTCTCTAACTCCTTAGTTTCACTTCATTTAACATGTCTCTTTTGATGAATGCTTCAAATACAGTTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAGGTGCAGTCAACAGTTTGCATTAGACTTCTCTGTTACTTTTACCTGGTTACTTTGGGTGATCTTTGACATGAAGGCGTGGTTAATAATATTCTTTTTCATTCCTCTCTTGTGTATGATCATTGATGTAACTCTAATGCCAACTGTTCTTGACTTTCTAAGTAGAATTTTCTTCCCTTCAAACTTGTTGCAGGAATACTTGGTAATATGCTAATTGTAAACCAGTTTTTTCTTTTGCTTCATATTGCTTATACACATTATCGCTTTGCCTTGTTAAGTTTTGTAAAGATATGAAACTTGTGCCCAACTTAGCCTCAAAAGCTGACTCATGAGGGAAGGACTCTAACCTCCCTAACAAATGGATACACACAGAGACACACACATAGAGACAGATAATGTGTATCTTACAGCACTGTATTTTCATATGTAAACACTTTCTAATGGTGTTCTTTCCAGGCCGTAGTTTTCATTTTTAATTTCTCCAGCTGATTCCTTTGTTACTCCTAAGATTGCGTTCATTTCTCCTTGCTGATTCATAATGTAGGTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</genome_strand>
        <mrna_strand>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG............................................................................................TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603640" ref_strand="+" ref_description="SGN-U603640 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345435|emb|CAO14733.1| (e_value=4e-117) unnamed; (*ATH) AT5G14580.1 (e_value=9e-112)  Symbol: None | polyribonucleotide nucleotidyltransferase, putative, similar to Swiss-Prot:P05055 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Escherichia coli) | chr5:4697243-4703069 REVERSE | Alias... ; (*SWP) sp|Q39VA1|PNP_GEOMG (e_value=8e-47) Polyribonucleotide nucleotidyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pnp; ">
      <seq>gccacgaggtgcaggtaatggcaagtgtgctttcatctgacgggaaacaagatccagatatattggcagctaatgcatcatctgctgctctaatgttgtcagatattccttggggtgggccaattggagtaatacgtattggaaggatttcaggtcaatttgttgtaaatccaagcatggaggagcttagcatcagtgatcttaacttggtatatgcatgtacgagggataaaactttgatgatagatgtccaagctcgtgaaatatctgaaaaggatttggaagctgctttgagacttgctcatccagaggctgttaagtatcttgaccctcaaattagactcgcagctaaagctgaccctacttatggaaagttcgagcgtggagaagctttggaaaaaatcacacaggacgttaaaagagctcttgaggaagaaggtgatgaggaaggcctaaaaattctaccaaagacagttgatacagtaaggaaacaggttgttcgcagaaggatcatttctgaagggcttagagtggacggaaggtgtcttgatgaagttaggcctttgtactgtgaagctggtaatttacctgtattacatggatctgcaattttttcaagaggggatactcaggtcctttgcactgttacccttggagcacctggggatgctcaacgtctggattccctggtcggtccttcaagcaagcgtttcatgctgcattatagctttccaccgttttgtacaaatgaagttggcaaacgaactggcctgaataggcgtgaagttggtcatggcactcttgctgaaaaggctctgcttgctgtattacccccggaagatgattttccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="44521" stop="41175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44222" g_stop="44209" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44208" i_stop="44122" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44121" g_stop="43951" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="185" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43950" i_stop="43518" i_length="433">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43517" g_stop="43392" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="311" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43391" i_stop="43312" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43311" g_stop="43266" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="357" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43265" i_stop="43167" i_length="99">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43166" g_stop="43150" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="374" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43149" i_stop="43015" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43014" g_stop="42895" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="494" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42894" i_stop="42493" i_length="402">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42492" g_stop="42355" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="632" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42354" i_stop="42239" i_length="116">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42238" g_stop="42076" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="795" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42075" i_stop="41533" i_length="543">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41532" g_stop="41475" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="853" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U603640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44222" e_stop="44209"/>
          <exon e_start="44121" e_stop="43951"/>
          <exon e_start="43517" e_stop="43392"/>
          <exon e_start="43311" e_stop="43266"/>
          <exon e_start="43166" e_stop="43150"/>
          <exon e_start="43014" e_stop="42895"/>
          <exon e_start="42492" e_stop="42355"/>
          <exon e_start="42238" e_stop="42076"/>
          <exon e_start="41532" e_stop="41475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGAGGTGCAGGTAAGCTGGTGTCTTTTTATTGCAATTAACTTGATAGTAGTAGTTTGTTTGGCGGCTATAAGCTTCGCTGACTCACATTCTCCCCAGGTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAGGTAATATCTTATATCAGTTGGCATCCTCAGGATAAATTTAGAACGTTAATGCTTTCCAATTTCAGCAAGTTGACTTTCATTCTGGTGGCAGTTACGACCCTGGCATCTTGAGAACTTAGGCCATATCCTTGGGTGCTGTACTTGTTTACACTCTTAACAGAAGATGGTTGAATTAAGTGTAAGAAATGGAGCTTTGGGGCTCATGCAGAAGTTGTAGTTTCTTGATTATATAGCCACTGCTGGGTGTCAATAGTGGATAACTAGCTTAATTTCCAAGAATTTGCATACTAGGCAAACTATTTCTCTTCCATAATATTAGGAAGAACTACATAGTAAGAATATAACAAATGTTGTTGTCACTGATGCCAATTATGTCCACCAGTAATTGCAGTCCTGTCCCTTGATTGAAGTCTTCTTATTGGATGTCATGCAGCTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAGGTGAGACATTGCTGGCTATCAATTTGTCACTGCTTCTCCATAACTCCAAACCAATAATTTTGATTTTTTTGAATATTCAGGCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTGGTAAGCAGAAGAAAGAGTATAAGCTGTCTATGGTATCAGAAAAAACATTTGAAAAGATTCAGAATCTGGCCAAAGAACCTATAGAAGCTGTTTTTACAGACCCTACTTATGGAAAGGTATCTATTTTCTTACTGGAAGATGAATTTAGGAACTTCACTGTTTTTCACTATTCATGTTATATAGTCTATTGATAAAGGCTGCAGGTACCTTCTTTTCACCTCATTAATACTATGTTTTCCATTCTTATTCAGTTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAGGTAAGCTTGTAGATGCTGAAGTTTATCTTTTGTGCTTCTGATTTTGAGGTTTTATGTTTACATCATTAATAAACAGAAAATTTTTGTTTCTTCTTTTCCTTTTGTTGATTGCAGAGGATCACATGATCAATGATTGACCTTCTAGGTTATTTCCTCATGCATTTTATCTTTGGCAAACTAATGTGTATTTCCCTCATGATTGGTCAATAGTAGGTTGCATGTGTTTTTTGGCTATATAAGTCCATTAGCAAACATTGACATATTCTAAATAAAGACTTCAATACTTCAGTTACTGCATTTTAAGGACTATTTGTTTGGGCTTCTTTTTACATCCTAAACTAAGGTTTTAGTCTTTTAATTCATTTTGTGATATTAACCTCCTCAAGTTTCTGACAACATCAGGTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAGGTCAGTATATTCATTTTTCACTAAGAATACATGATGTACTATGATTAAGGGTTATCATCACTTGCAAATATGCAATCTTGTTGTCATTCATTATCCCTTATGAGATGTTTATACAGGTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATGGTAAGCCGTTCAGTTCTCAGGTTTATAATATGGTCTGCTCCTGAAGTTAGTGAAAGCTGTAAATGGACCTTAATACTAGATTGTCAATTTGCAGTTGTAACTTGTAATCAACCTCAGTATGTGGAAACATTTATGCCATTTTGTACCAACAACGAGGGAAGAGAAATGTTGATAATGTACTCTCTTCCCTTTCCCATTAACCTTATTTTTCTTGTTTTATTGTTGTTTCCTTGTTTCATGTAAAAACCAAATACTGGCTAAAGGAAAAAAAGAGAAGATCTTATGTCTCTCTCATGCAATATCGTAAAGTAGGGGTTGGGTTTCCTGCATTGTTCTTTATGTTTGATTAATAAATATTTATATCGTCTGGTATAACTGGTTCTAGTTTTTGAGTCTCTGTCCACTTGGATCATCTTTTGGGTTTCTTGGTCTTTCTGTTCATTTGCTACGTAATTTATGTTCGTGGTATCTTTTTCTAATTACGGCATCTCCAGGGTAATTTGTGGATCATTTTCTTGATACTAGATGCTTAATCTTCTACAGGCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</genome_strand>
        <mrna_strand>GCCACGAGGTGCAG.......................................................................................GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG................................................................................GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG...................................................................................................ACCCTACTTATGGAAAG.......................................................................................................................................TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG....................................................................................................................GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584636" ref_strand="+" ref_description="SGN-U584636 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|5738864|emb|CAA63220.1| (e_value=0) isocitrate dehydrogenase (NAD+) [Solanum tuberosum]; (*ATH) AT5G14590.1 (e_value=0)  Symbol: None | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative, strong similarity to isocitrate dehydrogenase (NADP+) (Nicotiana tabacum) GI:3021512; contains Pfam domain PF00180: dehydrogenase, isocitrate/isopropylmala... ; (*SWP) sp|Q40345|IDHP_MEDSA (e_value=0) Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa; ">
      <seq>cggacaacacaaccgagttttctcacagcggcattgacaacttcttaaagccaactaaagtgttatgctcgccgtccgacccagactccggtgttcctccatggccggcgtcgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaattctattttcaagtcaattccaatcggcagctcttcaataacagagtatctctcactacgcgaatccctaatgcctccattcggtgcttcgcttccacctctggtccgactagcaaaatcctcgttcaaaatcccatagtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatctatccttatctagagttggatacaaagtattatgatttaggtatattgaaccgtgatgccactgatgaccaagttactgttgaaagtgctgaggcaaccctgaaatacaatgttgctgtgaaatgcgctactataacacctgatgagaccagagtcaaggaatttgggctgaagtctatgtggaaaagtcccaatggcacaatcagaaacattttaaacggtactgttttccgggagcctatactatgcacgaacattcccaggattgttcctggttggaagaaacccatttgtattggtaggcatgcttttggtgatcagtatcgtgccacagatgcaattattaatgggcccggaaagctcaaaatggtttttgtgccggaaaatggggaatcccctacggagctggatgtttatgattttaaaggtccgggtattgcacttgccatgtacaatgtcgaccagtcaattcgagcatttgctgaatcatcaatgtcaatggcattttcaaagaaatggcctctttacttgagtacaaaaaacacaattttaaagaaatacgatggaaggtttaaggacatttttcaagaggtatacgaagagaagtggaagcaacagtttgaggaacactcaatatggtatgagcatagactgatagatgacatggtcgcttatgtgttaaaaagcgagggtggatatgtttgggcatgcaagaactatgatggagatgtccagagtgatctgctcgctcaaggatttggttctctgggcctcatgacttctgtattgttatcttctgatggcaagacattagaagctgaagcagctcacggcactgtaacaagacattttcggctgcatcaaaagggtcaagaaactagtacaaacagtgttgcttccatttttgcatggacaaagggacttggacataaggctcagcttgatgggaatcaaaagttgttggaatttgttcacacccttgaagcttcttgcattgggacaatagagtccgggaagatgactaaggacttagctatattagctcacggacccaaggtgtcaagagaattctacttgaacactgaagaatttattgatgctgtagcacagaaacttcaagagaagcttcatgcctcggcgcctatttaagttgtactggattatgtagtgagaacatacatgtatgagctgaagaagatcatgagcagcatcctttcactgttaacataactctactcacactgcccgttgagacattctttactctagtttttgtagttgttcaggtacaagataacaggttgttgagtggtcccttcatactgatctacaatgggttgtgtatattattgtctcgttttatttaggatccttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="48671" stop="54609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48971" g_stop="49288" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49366" g_stop="49409" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="361" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49515" g_stop="49624" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="471" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49926" g_stop="49963" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="509" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474">
            <donor d_prob="0.108" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50438" g_stop="50515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="587" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51045" g_stop="51098" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="641" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51178" g_stop="51279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="743" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51385" g_stop="51473" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="832" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51575" g_stop="51678" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="936" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51821" g_stop="51889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1005" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="51981" g_stop="52096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1121" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="52238" g_stop="52272" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1156" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="52355" g_stop="52497" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1157" r_stop="1299" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="53414" g_stop="53536" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1300" r_stop="1422" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="53988" g_stop="54309" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1423" r_stop="1744" r_length="322" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U584636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48971" e_stop="49288"/>
          <exon e_start="49366" e_stop="49409"/>
          <exon e_start="49515" e_stop="49624"/>
          <exon e_start="49926" e_stop="49963"/>
          <exon e_start="50438" e_stop="50515"/>
          <exon e_start="51045" e_stop="51098"/>
          <exon e_start="51178" e_stop="51279"/>
          <exon e_start="51385" e_stop="51473"/>
          <exon e_start="51575" e_stop="51678"/>
          <exon e_start="51821" e_stop="51889"/>
          <exon e_start="51981" e_stop="52096"/>
          <exon e_start="52238" e_stop="52272"/>
          <exon e_start="52355" e_stop="52497"/>
          <exon e_start="53414" e_stop="53536"/>
          <exon e_start="53988" e_stop="54309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACAAACACAACCGAGTTTTCTCACAGCGGCATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAAGTAAGTTCATTTACCTAAATGATTTGCACTGAGAAATTCACTGCTTTAGGTGATTAAATGTTGTTTTTTCTCCTTCAGAATTGAGTCCAACTTATTGTTTATTTAAACATCAGTTGAATTAGATTAATGTTTCAGTTTGAGAAGTTGGCTATCTTTGCGTTGTTTTGTTTTGCCCTTTTTTTGGTTGTTGTTGCAAATGCTTCTGTATTTCACAACAAAGCTAATTGTAGTCAATATCAGTTAATTGCTCAAAACATTCTAGTTCCAAACTTGAATTGGCTTATACTCCTTTAATGTGCAGATACAATGTTGCTGTGAAATGCGCTACTATAACACCTGGTCAGTTGTCTTTTCCAGTTTTAGAAAAGCTTTTGAGAAAGGTTAAAGGAGGAAATTTCTGCGTGATATTTAAATAATAAAGGTTCATGCTTTAGTCCAAATGTTTCATTTAAATGGTGGTTTCCAAATCACTTATGGCTCTCTCATATTTAGAGTTTGAATTTTTCAGAGTACATGAAGCTCCCGTGTGACCATAGATTTTAAAGTTGAAATTTGAAAATTTGAGTTTTGCAAGTTGGGTTTGGACATGCATTTTACTTGGAAATTTTGTGAGTGGAAGTCCCAACTCCCCAAAACCCCAAAACCCCAAAAGACCTTTTTTTTAGGAACTTGAAAATTTCATGGCCAAACAGATATTGAAGCTCAATTTTCAAAATCTACTCCCAAAATCTATGGCCAAACGCTAGTGAAGTTACGTGGAAGTTAGAAATTGCACTATGACACTTTCTAATTCTCCTACCATTGATGTTTCAGATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACGGTGTGCATGCAACTCAATTTGTTTGTATCTTAATGACAAGGTCTACTCTTGTGTATGATGTGCATCCATCATAATATGATAGCGTCTGGCACGCCGAGCATCTTATTGGTGCAGCAAGGATACTTTCCTTATCTGTAGATGCTTTTATGTTAAATCTCAGGAAATACTAAAGGTGGTAAATCATAAGATATCATATGCTTTTATTGTACACGGAGTGACAGTATACATTTCCCATTGGATTACTTGTAATTTACACTGAATGATTCATTGTACGTTAAGGAAATTCTAGCAGCCTTTTGTACTATAGTTTCTGGGAATGCTAGCTCGACAATATGTTGGACCATATAAAGAAATAATTGAGAAAAAGTTCTCACCTTCATTATACCTGTTTTCTTATTTGTTATTTCAGAAGTAGCTGATTCCGATTTGAGCTTTCTACTTTTAAAAGAAAGAAGATAAATAAGTAGATGCCGTACTTCCTAAATTCATTATCCTTAATGGATAGAATGATGACAGTTTCTGCCTTCAGGTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTGGTAACATCTTCTTGATCTACTTTGTGGTATAAATCCAATATCATCAGTCTCGTCAGTACTTAACTTCTGAGATCTGCAGGTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTGGTGAGCTAGTTGATTTCAGTCTGTATTTATTTTATGAGGCAAAACATACACATACGAAGCATACTCATGCCAATACTCAACTTGTTTGTTGATTTTTATTTTCAGTGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAGGTTCTTCTTCACTATGCTTGGATGAATGACTATGCTATTTCACTTCAAGCTTTTTCCTCTCTCTTGTATATTCATTCTTTTTCTGTGGTGAAATTTGCTAGTCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAGGTATCCTTAATTTATGCTGATCAAATCATTTCCCTTCCAGCCCTGTCTAATTGAAAGCGGGGGGATACTATTTTGAATCTTCAGAAAATATATTTTTTAAGAGTTTAGCTGAATTATTCACCGTCAAATTTGATTGTGTCAGGTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATGGTTGGTTTTTTATGAGATTAATGAGCAGTTTTTGTACTTCATTTCTGGAAAATGGTTGCATTATTGGTCAAAAGCTGTCTCTGGCATATAGGTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAGGTGATCCTCATGATTGTACTCTGTTACTTCATTCTGTTCCTTCGAAATTCATGTCTTAGTTGAAGGTTTTGATTTGGCGTGATGATACAGTTACTATATCAACTTCTAAAAGTCTAACTAAGTCTATCTTTGTTATTTTAGGATTTGGTTCTCTGGGCCTCATGACTTCTGTATTGGTGGGTATCTTCCCGTTAAGCTTTCTTTGTAGAATATCGCACCCATTGGTCCTCTGTATAATAGAATGTATCTCCTCTGCAGTTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAGGTGAGTTGCTGCTATTCTCTAACGGATTTGTTACTTTTACTGATTGGGGTAAACTTTTGTTCGTTGTTACTTGGGTAACTGGAAAAGTTGCTGACGTGTGACTAGGAGGTCACATGTTCGAGCTATGGATATAGCCTCTTGCAGAAAAACAAGAGACCCTTGTTGTCCGTCCCTTCCCCGGATCCTCCTGCCTAGCAGGAGCTTGGTGCACTTATTTTTTTATAGTTGGGACACGTTGCACTATTATGCACTACTTGATCCCTCTTCCCCTTTCTGCTCTCTCTCTCTCTCTCTCTACACACACACTCTAGAGGCTTTCCTCTTCTTTCCTTAATTTCTTGGGATTGGGTGAGGTTGCCTGTCTACCTAAACTATTATTATTTTTGCTTGCACCATCACTTGAATCAATTTTTCTGGCTTGGTGATATGACTATTACTAAAGTAGGTCGAATAATGAACTGATAGCCTGCTTGATATCATGTTGTCTCTATAATTAGATGGAAAAAAAGGGAAGAGTAGTGGATGCAAAAATGGATTCTGTACAAATTTTGTGTTACTCGCTGTGTCCATATAGCGGGTCTGGTTTTCCCTTATAAATGAAATTAAAATTTATTCCTGCTCTTTTCCATTTGTGCTCCTCTATATATGAAAGAACTCTCCTTGAGCAAGAGCCGAGAAGTATTTCCGATGTTTTTGAGGAAAGTTGAGGAATGGAAAGTCTACTTTTGTTATGGTGAGATTATTGGGGCACTCCAAAAGCAAACACAATACTGGTGTTCTATTCTTTTTCCATTTATTTTACTTTTAGGTAAGCGGACATTATCTAATTTGACAGAAAAACTAAAGGTGGCTGTTAATTTCCGATTTGAATGGATCTGTCTCTCAATGCCTAAAAATACACACTATTCTTCTGCAGGGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAAGTAAGTGATGGTTTCCTGCTTCAGTGTCATCTGTACGGCATATATCATCCTGCTCTTTTTCTTTACTCCACACTTGGGATTTCTGATATCTCCTCTAACTGTCTGTCAACCCTTGCCCTACTCCTGGGTAAGGACAGAGTCCTCCTCCTCTTGGTATTTGCTACTCAAAATACCATGTATTTCGAGGTGCAAAAGATGTCCCTTACACCAATTTTATTTATTTTTTAATAAAGTGAACAATAAATTCTATAGCCTAAGCCACCTTGAATAATTATACTAAGAACTTTTCACCTTCTTACTGATAAATTCTTTATTATGAAAAATGTTTTTGACACAAAAACTTGATTCAGTTAGCAAGATAAACCAAATGAAGAGACGTTAACATGAATAGTCTGCGACTTCTCTCTTAATTTCAGTGAAACTCAGTATTTGAGTAATTATACTTTTGCAGGGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTTCAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCAT</genome_strand>
        <mrna_strand>CGGAC-AACACAACCGAGTTTTCTCACAGCGGCATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA.............................................................................................................................................................................................................................................................................................................ATACAATGTTGCTGTGAAATGCGCTACTATAACACCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG...............................................................................GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG.........................................................................................................TGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG.....................................................................................................TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG..............................................................................................................................................GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG...........................................................................................GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG.............................................................................................................................................GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG..................................................................................TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAAGGGACTTGGACATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTACAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570897" ref_strand="+" ref_description="SGN-U570897 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157345443|emb|CAO14741.1| (e_value=4e-128) unnamed; (*ATH) AT5G14600.1 (e_value=8e-121) | Symbol: None | expressed protein | chr5:4706948-4709146 FORWARD | Aliases: T15N1.90, T15N1_90; (*SWP) sp|Q96FX7|TRM61_HUMAN (e_value=2e-56) tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Homo sapiens GN=TRM61; ">
      <seq>ggacaacaatacattacgtataccccagaccccgcctcgtcttcttcctcgaactcaccagtgcgaaacccagcaagcccagaccccgctctactcgctcttcgtacagtattccggccttcatcgtcggtagcatcggcatctataattaagattcaaccattctacatgattcttccaattgacccagcaaataaattatcgtttaagcgttttattaaagatggagatttggtcattgtgtacgagaggcacgacacaatgaaagcagtgaaagtcagtgaggatggggttctgcagaatcgttttggtgcttttaagcattctgaatggataggtaaaccttttgggtccaaggttttgagtaacaaaggtgcttttgtttacttgttagctccaactcctgagctatggacgctagtactgagtcacagaacccagattctttatatagctgatattagttttgttgttatgtacctggagatcgttcctggttgtgtggttcttgaatctggtactggaagtggatctttgacgacttcgcttgcaagggctgttgcccccactggccatgtttataccttcgatttccatgaacagagagctgcctcagctagggaggactttgaaaaaacagggttgagcagtctggtcacagtaggagtaagagatatacagggcgagggattccctgatgagttttgtgggagagcagattcagtattcttagaccttcctcaaccttggcttgtcattccttctgctggcaaaatgttgaaaccagatggggtattgtgctccttctctccatgcattgagcaagtacagcgctcatgtgaagcactcaaatcacagtttacagatataagaacatttgaagtacttcttcgcacctatgaagttagacaaaagatactagagagctgcccagtaaatgaaggagattctattgagcgtcctccacggaagaggaggcagggttctgctgaaggaagcaatgggactgaatgctcctcttctcctgcggtggtgattaggccttctggtgaggcaagaggtcatacaggctatttgacatttgccagactcaaatgttttgtgtaatgtgttttgatgaatatccagttcttgtggtcgagtacactgttcgttctttagatgttgtgcttatttttcttcttgattctacaattagatatcagacaattttgtcttgagatttaacaaaaaggaaaagaatcgcttctattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="75066" stop="79540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75366" g_stop="75510" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77159" g_stop="77634" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="620" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78511" g_stop="78755" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="865" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78851" g_stop="79240" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="1255" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U570897" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1256</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75366" e_stop="75510"/>
          <exon e_start="77159" e_stop="77634"/>
          <exon e_start="78511" e_stop="78755"/>
          <exon e_start="78851" e_stop="79240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCTGTAAGTATACTTCGCACAACTCTATGTAAATTCTTCGTCTCCGACTTGAGTGTTTCACTGTGCTCAGAAAAAAAAAACATGCTTGGTTTGTAGTTACTGTGGATTGTCATAGTATACCAAAAACTTAAAATTACCGTTCGATTTTAAAAGGAAACCAAACAGAGCACAAAAAGAACATCAAGAAAACATCTAGCCATTTTTCCATCTTCATATTTCCCAGGGGCTGAAAGCTGTTTTCATTGAAACTGAGAGCATAGAAGAATCTCGTACATCCTCTGTTTGATTTTGGGTCTTTGAAGTCGTTTATAAGAACACACATTCAGAGGGGTATGTAGAAAACTTGAAAAAAGTGAGTGAACAACTTTATACTCATTTATAATTCTGTTAAGTTATTGAAATCATGAGATAAGAACACTATGTTTGACAAATTGTAAACAATTCATAAGAAAGGACTTATGTTGAAATCAGCAGATGATACTAGCCTTGCTATATATTACATTGCACATATTCAATGAATTATATATGATGGCTGGATAGGACTATTTTCTCTGAGTGGCTAAATGACTGAGGTTAAACGGGTTGACTTATTTAAGGTCCAGTGTTTCGTTATGATGATATGGTATTTTTGGAGTTCTTTCTGATTGTCAGTACACGTGAACCCAGCTTTTCCTCTGGTTTTCTGGTGGTTTTTACAGGGGTCTGTCATAGAATGTGTTGAGAATTTGATCTAAAACTTATTGTTTGCATTATCTAGACGATGTGGACTTTATCAAATTGTACTTTTTAATGCTAAAAAGATGATCACTATTTCAAGTAATTAGCGTAGCGGTCAACAAACTGATAAAGTGGGTAAACTTTTTAGAGATTAGTGTCCAAATCTCAACATAATGATAAAATGATTAGGTAACGTTATTTGGTACTTGTATTGGTGGAAGGGAACAACCGTTATAGCTGATTTGAATGCTACCATTATAAGAAAGGCGAGATGAGACAAGTGCATTGAGGTGAGCTATGCTGAGGTATGGAGCGTCCCTTATGGCACGAGCTTGGGGGTAAGAGAGCAAAAATAATCATATTAATTAGGAGTTGAAGTGTGTCCTAAACTAGAAGCTTAATCAACCTGATGAAAGGATTAAAATGTGAGCAGTACTTAACTGTATTTAGATTGGCATCCCCAACTAGATAGGCAATTATTTGTAATCATTTTATTAATTTGAACTATTCAGAGTAGTAGAAGAGAGCACATTATCTCAATCCAGAGAAAGGATAAAAGGCCAAAACAATTTGTTTCCCTCCTTCAAAACTTGGGCAAATGACTTTTTTTTTTTACTTGATTTGAGTTTCATAGTACTCAAGGTTTGACACATTCTTTTAGGAAAAGGCGTGGGATAGTACATAGTTTCTAGAAGAAATAGTGCTCCTAATGCTAATGGGATGTAATATATAGCAAGCCTGTTATTCTTTAACTACAAGAAGCATTGCACATTTGGACTAAAGCTACAGGGTTGACCGAACCTGTAAGCTCTAGGCTTGACGAATTGTTAAGGTTACCGTTCTGTTTTTCAAGTTGCATATTTTATTGGGTTTCTGCTGTTTTCTTTTCAGCACTTTTGAAGCTCTCGAGTAATTATTGGGTTATGTTTGGCAGATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAGGTAAGACTCTAATACCTAGGAACTTATTTGTGGATTTACTGTCATTAAGTTGTCAATTGTTCTAGTTTGATTTCTACCAAGCTTTTGTTGGTTTTAAGTGCATTTACTATCCTTTACAGTCATTTTAGTGCAAAAATTTAGTTTTAGAAGATGTTTAAAACTCAGGTTGAACACATTTTTAGTTGTAGGGCACTCCTCAAGAGGTTATAAAATTGAATACTTCTTTTAAATGGGGCTCTTTTTACCGACGAAGAACATTTTCATGGGATTTCTTCTTGTAGCAAAATGTCTTTTTCTTCTTTTTGCTGCTTGATTAAGAAGTTCATCCATCCGTTTAAAAAGCAATGACATCCTTTCCTTTGTAGTTTGTTTAAAAAAGAATGACCTCTTTTCTTTTTTTGGTAACATTTTACTTTCAGCTTTTGATGACATGTTTAAGACCACGAGATTAAAGGGCAATTTTGTACATTTGACATAACTTTAATTTAGGATCACATGATTAAAAAATCTTCTTTATTTTCTAAAACTCCGTACCAAGTCAAACTAGACCAGTCTTTTTGAAACGGAGGGAGTATAAGGTTTCAGGAGTTGGCTCTAGAGTGCCACAGGAAAGCAACATCTTCCCATGCAGCCTTTATGATGTGAAAGTGTAATACTACCACCATGTATCATTGTGCACTAGCACAAAAATGTTGCAAGAGGAGAAAATTTGATCAACACTTGCCTCTTCGTGTAAATGTAACAACAATTAGGAAAAGCGTTCTTTTTCCAATCAGCTCCACACACCCATCTAAAAGACGTAGAATGAGAAAGAGAGCTCATTATAATTTTCATTTTATGTGAGTTTAACTCGGTGTTTAAAATTTCCGCATATAGGGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAGGTAAGTTATTTTCCTGGAATCTTGGTCTCATTCAGTTTAAAACACTGCTATAGGAACTACAGACTCTCATGTGGCAAGTGTTTTTGATTTCGTAGATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCG</genome_strand>
        <mrna_strand>GGACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTCGGTAGCATC-GGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG...............................................................................................ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566605" ref_strand="+" ref_description="SGN-U566605 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|18395855|ref|NP_566142.1| (e_value=8e-119) triose/phosphate translocator, putative [Arabidopsis thaliana]; (*ATH) AT3G01550.1 (e_value=5e-121) | Symbol: None | triose phosphate/phosphate translocator, putative, similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator (Cauliflower){Brassica oleracea} | chr3:216820-219016 REVERSE | Aliases: F4P13.10, F4P13_10; (*SWP) sp|P52178|TPT2_BRAOB (e_value=6e-107) Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT; ">
      <seq>gggttgtttctcctccctgctaaagttgtgcaatattcattttttatctgttgccaacatatagatgtataattgaaatttcaatggaagaatgtcaaccatcaatgtcgatataagctgatacgaaatagatttagctctcaaccataaaccatgggaacctctacattttacatgtctcttcccacaccatttctaaagcctcaaaaaccttccaataaaatcttcattaccagtagtaataagttcaactcagctcttcagcattatgctttgcacaagccaaaaagttgttcgattcgaaaaactagtgttgctattctggcgaaaagttcatgtagactggatctgttcaaagtgagggctgtagcagaaaatgcaggtgaatctgaggttgtgaaacccaaggaagtgatacagacgcttcaactgggcgcgatgtttggaatttggtaccttttgaatatttgttataatatttacaacaaacaggtactcaaggtttttccatttccggcgactgttacggcctcacaatttggctgtgggactttgttaatactctttatgtggggatttcgtcttcatccgataccaaaaatcagtaaatctcaatttaaagcaatattcgcactagctgcaattcacacattgggtaatgttctaacgaacatcagtcttgggagagtagccgtttcgtttactcacacaatcaaagcaatggaaccattcttcaccgtgcttctttccgcgctgtttcttgcagagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtaatgtatttagcaaaaaattcatggttaaagaggaggaggcattggacaatatcaatttgttctctatgatcacaatcatttcattcatccttttggtacctgctgccattttgatggaagggatcaagcttactccatcctatctacaatatactgctgcaagtcaaggtttacatgtcagagagctttgtgtgagacttcttttagctggattctgcttgcacagttaccaacaggtttcatacatgatactacagatggtatcaccagtgacacatgcagttggtaattgtctgaagagagtggtagtcattgtatcctcagtcatcttcttccaaacacccgtttcaccaattaactcccttgggactgctatggctctagctggagtctttctttattcaagagtaaagagattacgggggaagccaaaagatgcgtgacaagtgaagaaagttgtcaaatcctgtagtcataatgccctgtaaagaaaaggttaaccaaaaacaggaactcgtggattgggttcgagttataggaagattaggtcaggaactagcaagtagtttgagaatccctgtcaataatggaaggatggcaaaagatggaagaagatatttaaagcaatcgttattgcatttcaagatgtgtaatttatacattagtgcaataccaaaatcaactactaaggcctatgactgaaactgaattattctgatctggctcaaaaagttttggaaattccatgtatcaaaaccaggataccctttaaaagagggaatataatttcaatcctctctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="82654" stop="124578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82953" g_stop="83567" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84238" g_stop="84390" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="768" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84631" g_stop="84716" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="854" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85007" g_stop="85091" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="939" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85349" g_stop="85471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1062" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85564" g_stop="85641" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85979" g_stop="86108" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1270" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86246" g_stop="86613" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1638" r_length="368" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86614" i_stop="87466" i_length="853">
            <donor d_prob="0.674" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="87467" g_stop="87555" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1639" r_stop="1726" r_length="88" r_score="0.506"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U566605" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82953" e_stop="83567"/>
          <exon e_start="84238" e_stop="84390"/>
          <exon e_start="84631" e_stop="84716"/>
          <exon e_start="85007" e_stop="85091"/>
          <exon e_start="85349" e_stop="85471"/>
          <exon e_start="85564" e_stop="85641"/>
          <exon e_start="85979" e_stop="86108"/>
          <exon e_start="86246" e_stop="86613"/>
          <exon e_start="87467" e_stop="87555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAAGTTACTCTTTCTCCTCTCCGCTTCTTCATGTGTTTTATTTTTATTGTTATTTTGAAAATTCAGTATTTTCCTTTCTATCCTGCTTTGATTGCTGTTATTGTGCATACATCTTTGATCCTACTCTCCCCAGACCGATTACACACATGGCTGCTGTTGTTGTATTTTCTGGTATTTTGTTAACAGAGAATTTATTTCGTGAGAAAAACTTTACTCCCTCCGTTTCAATAAAAAAAATAATTTTTTTTGTTACATTTTAATTTCATCTTTTCACCTGAGATGATTAGGCTACGAGATTAAAGAATAATTTTGTATATTAGATATAACTTTAATTTGGGAGCATAGATTTAAATATCTTTATTTATTTTTTTTAAAAAAATCTCGTGTCAAGTTAAACTAAATCATTATTTGCGTACGGGAGCTACTCTTTTTAATACTTTTTAACTTCATGATACTTGCTTCGACGTCTATTGAACTTTACCACGCCAAAATTCATCAAAACACACTCGATATGTCAATATCATTATTAATTTTTTAATATATATATATTTTACACAGAAAATGACATCCAGTCATATCAAAAACACGTAAAACCATCCATTTTTCATATATGAGAATTTTGTTTTCAGTATGACTAACTTTCTTTGTTTTGATTTATATATTGAATTTCCAGTTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGGTATAAAATTTTTACAATGTTACCTCTTCATGATATATAACATTCAGTTGATTTGGCTTGAAAGCACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTGTGGCCCTTCTCCAGACCCTGGTGAAAGCAAGATGATTTATGCACCGGGCTACCTTTTTTAGTTTTTAATTTATCATATTTGGTGAAGATGCAAATTTTGTCTTGTGAAACCATTAACTGTCAAAGATGGTCTAATAGGAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCTGTAAGTAGTATATATTAACTTCCAGCCATGTTTGAAGTGATTTTTATCTTCTACTTTTACTACAATGTGATTTGTTTTCCGTATCAATCTAGGCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAGGTTAGTATCCTGTAAATTTACATGATAATCTGCTCTGTTAACTTTGGTTCTGTTTGCTTTAGAGCCTCCTGAAAAGTGAAAACTATATCACTAAGCATCATTATTCTGACTAGAAGCCGATGCCAGCCTTTTTGCAATATGTTCAACTGAACTGAGTATTTCCAACTCGGAGCACAGCTATATGTGTGAAAAAACATGATAATTTCTAAAAATTAAAAACTGTACCCCGTAATTGTAAAATGAATATAGTGCCAATAACCTTAAAAGTTGAACCCGTCAAATTTAAATACGTTAAATCCACGTTTCATTCTTACTTGATCTTTTTCTTTGTGGAAAGGTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTGGTAAATATTGATTCTCTACTTACTACTTTTTTTTTTTTGGAATCAAGTATATCAGTTTCTTAACATCTCTATTGATTGGTTGAGTGAATCTATCTATCAGTAATTATCTAGCTTGTGACACTGTTCAATATATTCAGGGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCATGTATTAAAACAGGAAACCCTTTCATATAGGAATATAATTTCAATCCTCTCTTCTTCTTTTTTATCGTTTGATCATTGTCGATCAGTCCTTTGTTCATACAATAATACCAAGGTCTTAATATGAAAACCATTAATCTACTATTTATTTGCGTTCTTCATGAATACTTTGACTTGAGTTATCCCTTCCATACTAATAGTGAATAGTTTTATAGAAAACCTGTATACCTCCGGGGGAGGAGTAAATTCTGCTTTCCCTACATGGAAGGAGTAAAAGTAATGCATTAACTAGAGAAATTTGCTCAACACTTAGAAGTGGGCTGATTCCATTAAACAAAGTTTGACGGTAAAATACTTTACATTTACATCCGTCAAAAACTTCCCATTTGCAGATTTTCAGCTATCTATTTCCAGTAATACGCTAAAAGCTTCTTCTATCCGAGAACACTGTTTGCCAAAACATGTAGTGGTTAAAGTTTAACAAAAATGACCCCTTTTTCTTCCAGCATTTCCTACAACACATCAAAAATCAACACAGGCTCTCCTTTACCTTCTTACTCCTCCCAATTGTTAGCACGGGGTCCATCGCCAGATTTCCCATCACCTTGGGATCTTTCTTTTTCCCAGTCCTTTCGGGAATCACCAGCTGATGATCTAGTGAAGCCCATCATGGCTTCATGGAAACTGCCACCTACTGGAACTTGAATACGAGTCCGCTCAGATCTTTCAGCACTACGGCTACGACTTCGCTCCCTGCCTTTTCTGTCACCCCATCCAGAACCTCTATTAGGGCTTCTGCTCCTACTTCTATCACGTCTCTGTGAACCCTGCATCATAGTTTCATGGAAGCTTCGACCATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</genome_strand>
        <mrna_strand>GGGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG................................................................................................................................................................................................................................................CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG..................................................................................................................................................................................................................................................................................................GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG.................................................................................................................................................................................................................................................................GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT............................................................................................GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG.................................................................................................................................................................................................................................................................................................................................................GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG.........................................................................................................................................GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCTCAAAAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAATTCCATGTATCAAAACCAGGATACCCTTTAAAAGAGGGAATATAATTTCAATC-CTCTCTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587086" ref_strand="+" ref_description="SGN-U587086 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>actttacttgtttactaaacgcgtgatataagctataaccgcgtagcataactttatggagaacagcctcatgtatctttgattctgacgatctgattcttatccctttgagtattacactagaaattcagcttatttagcatatataatgatgagcttgttgtgatccacgtagcggccatctccttggattgtatcttctctggttcccgttgttggtggagtagcattagcatcaatgacagaggcctcttttaattggtatgtccctccctaactttgtaaattttatcgttttgtttctgtaggttagaccggtctatatattgctctctccttgtgcctattttgctgtagggggcggtttacaggtgtacaacctctgtaacttcatggtatatttatggattgacaagttcttattagaagactgcaatttcctaactgtcgcactatctactcctgttaatagttttgcacagttattgttgttactgtggggtcttaatagcagttatacattgattctgaactctctgtctttggaacaggataggctttggcagtgcaatggcttccaatctgactaaccaatcgcgtantgtatttagcaaaaaattcatggttaaagaggaggtatagacactaaacattcanatgctaggaaaataaatactcaattattctaacatcatanntattcaaattcagctatcttacttcttatattaaaaaaacagtcgtagccntngggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="84156" stop="85511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84456" g_stop="85211" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U587086" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84456" e_stop="85211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTG</genome_strand>
        <mrna_strand>ACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTANTGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCANATGCTAGGAAAATAAATACTCAATTATTCTAACATCATANNTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCNTNGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562803" ref_strand="+" ref_description="SGN-U562803 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|1169228|sp|P46942|DB10_NICSY (e_value=0) RNA helicase-like protein DB10; (*ATH) AT3G01540.2 (e_value=0)  Symbol: None | DEAD box RNA helicase (DRH1), identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr3:212758-216678 REV... ; (*SWP) sp|P46942|DB10_NICSY (e_value=0) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris; ">
      <seq>gggtttctctctgcttctccgctgcttcactcataccttcgtatacttttatatataaattatttagcagagtgagtgggagggagaacggacgggagacatcgtcggaggtgggaatcgtttgtatcagcttcttttatcgtcatcggaaagactttgtcagaggtaattggatactgaagcttgagatggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacccttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaatccagagaccaatactacccaatacgagaagcctgttgctactcctcatgtgggtgctgcacaacataaatcctctgtatctgtaagttcatcagttgagaggccttctcaaagtcaatgttctgaccatggtgacaacagaggtaccaatggtgccttgagcaaactttcctctggagagggtattcagactgcaagagcaaatgagctttcccgcgatgaaacatctgcgcctaaaggttatagtgcttcagctgccgcgagtgacatatctccagatgcctatcgccgtcagcatgaaatttctgtctcaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggtttccttcagagattttgagggagatacatcaagctgggtttcctgctccttccccaatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactgggtctggaaaaactctaggtttcttgcttcctggctttattcttctaaagcaacgtcggagtaatcctcaatcaggccctactattttggttctctcgccaacaagagaattagccacacagatacaagatgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatatggaggcgccccaaaaggccctcagctacgagatctggataggggagttgatattgttgttgctacccctggtcgattgaatgatattttggagatgagaagagttaggctggatcaagtttcttacttggtgttagatgaagcggatcgtatgctggacatgggattcgaacctcagataaggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatggcctaaggaggtccgtagaattgcagctgatctattggttaatccagttcaggttaacattgggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtcatatatggataaacaaaagcgtctagaccagatcttgagatcccaagagcctggatcaaaaatcattatcttctgttcaactaagaaaatgtgtgaccaacttgctcgcaatcttacacacccatttggagctgctgctattcatggtgataaatctcagggtgagagggatcatgtactgagccagttccgcactggcaagtcccccgttcttgttgcaactgatgttgctgctcggggcttggatgtcaaagatatcagggtggtggtcaactatgattttccaactggtatagaggactatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattttttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggctaggcgtcaatgggattctggctcaggtggacgggaaggaggacatgggggacgttatgatgctggctacggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaagaagtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgatgctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagagacgtgatagaagtaggagcagaagccctaatagaggttctggatggggtgacagaaaaggcagggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttccagtaggtggcagtttccatgaagccatgatgggcttcactagatcatcagctggtgattcccgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgtgctaacaattgggaggagtaagaaggtaaaggagagcctgtgttgatttttgatgtgttgtaggaaatgctggaagaaaaaggggtcatttttgttaaactttaaccactacatgttttggcaaacagtgttctcggatagaagaagcttttagcgtattactggaaatagatagctgaaaatctgcaaatgggaagtttttgacggatgtaaatgtaaagtattttaccgtcaaactttgtttaatggaatcagcccacttctaagtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="97312" stop="86613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97013" g_stop="96851" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96850" i_stop="93313" i_length="3538">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93312" g_stop="92979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="497" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92004" g_stop="91882" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="620" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91195" g_stop="91127" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="689" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91126" i_stop="90614" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90613" g_stop="90344" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="959" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90343" i_stop="89673" i_length="671">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89672" g_stop="89322" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1310" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89321" i_stop="89126" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89125" g_stop="88848" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1311" r_stop="1588" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88847" i_stop="87968" i_length="880">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87967" g_stop="87593" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1589" r_stop="1963" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="87509" g_stop="86913" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1964" r_stop="2560" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U562803" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97013" e_stop="96851"/>
          <exon e_start="93312" e_stop="92979"/>
          <exon e_start="92004" e_stop="91882"/>
          <exon e_start="91195" e_stop="91127"/>
          <exon e_start="90613" e_stop="90344"/>
          <exon e_start="89672" e_stop="89322"/>
          <exon e_start="89125" e_stop="88848"/>
          <exon e_start="87967" e_stop="87593"/>
          <exon e_start="87509" e_stop="86913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTGCTTCTCCGCTGCTTCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAGGTATCATATCTCATTTATACTCGCGATGATTCAGATCTGAGTTGAACTTGCTAGGTTTGGTATTTGACCCCTGATATGTGTTGGTTAACCAGAATGCAGGGTTTTAGATGTTTTATTTTTTTGATTGTCTGGCCTCGATATTGTCGTTATTTTGAAGCTGAACTAGATAGGTTTTGCCTTGAGCTGAAGTTGTTTGGCATTTGAACCCTGTTATGTGTTAATAAATAAAAATTTAGGGTTTTAGATTTTTTTTATCTTTTTGATTGTTTGGCCTCGATGTTCTTGTCCTTTTGAAGTTGAACATGGTAGGTTTGGCCGAGAAGTTGAACTTGTTTGGCATTTGACCGCTGATATGTGTGATAAATAATAATGTAGGGTTTTAGATGGTTTTTAAAAATTGTTTGGCCCCGAAATTGTCATCCTTTGGAAGTTGAACTTGCTATGTTTGCCATTTGACACCTGCTATGTGTTAGTAAACGAGAATGTAGGGGTTTTAGAATGTTTCTTTTATTGTTTGGCCTTGAGTTGAACTTGTTTAGCATTTGACCTCTGCTGTGTGTTAAAAAATTAAAAATGTAGGGGTTTAGTTTTTTAAAATTGTTTGGCCTCGATGTTGTTGTCCTTTTGAAGTTGAACTTGATAGGTTTGACATTTGACCCCTCCTGTGTTTAATAAATAACCATGTAGGGTTTAGATAATTTTTCTTTCGATGTTTGGCCTTGAAATTGTCGTCCTTTTGAAGTTGAACTCGCTAGGTTTGGCATATGACCCCTGCTATGTGTTAATAAACAATAATGTAGGGTTTTAGATTGTTCTTATTTTAAAAATTATTTAGCCTCAATGTTATCGTCCCTTTGAAGTTGAACTTGATAGATCTGGCATTTGATCCCAGCTATGTGTCATTAAATAATAATGTAGAGTTTTAGATGATTTTTTAAGAAAATTGTTTGGCCTCGATGTTGTAGTCCTTTTGAAGTTGAACTTGCTTGGTTTGGCATTTGACCCCATTTACGTGTTAGTAAATGACAATGTAGGTTTTTAGATCGATTTATTTCATTGTTTGGCCTCAATGTTGTGGTTGTTTTGAAGTTGAAGTTACTAGGTTTGGCATTTTGACCCCTGCTACGTGTTTGTGAATGATGATGTAGGGTTTTAGATCATTCTTTTGTTTGTTTTAGGTTTTTGTGACTTTTTTTGTTATTGCTTTGTGTTCCAACAGTTCAAAAGCCTTTGAACTAGTGCAGTGTTGTGAAAAGCGCAGAAAAGAACGCTTAAAGCGCGTTTCAAAGCGAAGCGATACCAGTGCCCTTCTTTCTCCTGAGGCGATGCGATCTGAAAAAGGCGCTCGCTTCAGATAACGTTGCGAGAAGCGACACTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAGCGACAATTAGTTTTTTTTTTTAAAAAATTAGTTAAAAAAATCTGAAATATACAATATAACTTAATTTTTCTTTCATGACTCTTCTTTCGCTTCTTCTCTCTTCACGACCACGACTGAGACTGCGTCTCTCTTCACACATCGACTGCGACTGCATGTAAGTGTTAGCCGATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATACAATCTTCGCCTTTGTTTCATCTCTGTGAGTTTCTTTTCTCTTCAAGAAATGTACGAAGGAGAAAGTCTCACTTATGGTGATGTTTCTGTGGCAAGTGGTGTTGAGGAGAATATTTATAGTTTTAGGGGGAGTACTTTAAGGGGCAAGGAAAGAGGAGTTGGAGGTTCTAGTTCAACTCGAAACCTTGTTGATGAGCCTTCTGATGATGAAGAAGATGATGACCAAGTAGAACCCTTGGTTATGGCACTTGAAGAGTTTGAGGATCTTGTTGAAGAATAGGAGTTTGAGTCTTCGTGATTTAATTATGTTTTTATTTTTGCTTTATATGTTATGACTTATGAGTATTATTGACTATCTATTTTCTTTTAATCTAAGACTATATTACCTCTATTTAGTTATTTTTTTATTTTTATTTTTATACTAATTTCGCTTTTTTTTAAAAAAGCGTGCGCTTTGCTTCACGCTTCTCGCTTCTGTGAAGCAAGCCCTCGTCGCTTTTTTCCGCTTATCGCTTCCCAAAACACTGAACTAGTGCCACTTGCGTGAATATAATGCTTTTGTGCATGTTTGAGTTGAGAGTAGTCCACTTTCGTGTTATTGTAGTCAGTAGCGTATGCAAGATTTTTCAAAAGTGATGTTGACATTTAAAGAAGAGAACGGATTAGATGAAATAATGAAATTTTTTAACCTTAGGGTCTTAAATCTATATTGACTAATCAAGTTAAAAATTGGTTAAATAAATTTAATGTTTACAATTTATGCAAAAGCGGAGAGCTTGGTTGATGGGTTTTGATTTGATCCTTTAACAATTAAGCGCTTCAAATTAAAAGAATCACAGAATCACACGAATTCACTGAGTAGGAGGTTCAAAGTCGGGGAAAATGCAACATAAGTTATGAGCTTAACCAGGGACCATAGAGCACTGTGTGTTATCATTCAATAATATATGTTCACGTACTCTATTTTTTCAGGTTTTATATATATAAGAAATTTTTGATGAATCAGTGTCAGATGACACCCCTTGCCACAAGGTGCATCCAGCCTGTAGTCTCAAGGGAAAACGGCAGTCATGTTAATTTATTCCCATAGATAGTTAGTGTTCCTGCTCTCCGAGTGTTGTGTAATGGCCATCCATTTATTCAGTTTTACGTATTTGACCTCAAGTGTTTTGTTGTCTAGGGGGAGGGTAGCGTAATGGTCAGACCCTTTACCCTACGGTATTATTGGAGGATTGAATCACCATGGTAGCAAGGTCGGAAGGGGTCACAGTTGGTTGTCTGGGTTGGGTTTCTTTGGTTAGTAAGGGGGTTGGTATGCAAAACAATTGTGTGCTGCCTTTTGCTTTTATCAGTATAACTGTGCGAGGGGCACAGTTACTTGTGTTGCTTTGTCTCTGTTAAGAACATATCTACTACTCTTGAAGTAACATGTTCTCTTCCCTTGTGTAGTTCATCTTCTTCTCTCTTTTGCGCAGCCTTATTTAGCTGTTTTGGCTGTAGTACATTTTTAGTACTCCCTCTGTTTCAAAAGGATGACCTAGTTTGACTTGGAACGGAGTTTAATAAAAGAAAGAAGACTTTTAATCTTGTGATTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTGATCTTGTGGTCTTAAACATGCCACGTGGAAATTTAAAGTTAAAGTGTTGCAAAAAAAAGAAATGCGTCATTCTTTTTGAAACAGACTAAAAAGAAAATAGGGTCATTTTCTCGAAACTGAGGGAGTTCCATCTTATAAACACTGTCAATCATTCAGGTGATGGAATATAACACATGAAAAATGTGATTCATGGATTTCTTTATAGTATTATTGCTTTGTTTAACTCTTATTCTCATTTCATGCTTTAAAGTCGTTTCGTCTTTTCTGGTGCCAGAGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAGGTATCTAGTTCTAATTAATACATGTGATTTCAATTTCTTCTCTCTAACTTTCAGTGACTTAGTGATACACAACAGGAGAAATCAGCAAACTTTTGTTTTGAATAGTATCTTGGGTTGTCTATTGTCATTTTGAAAATCACTATTTGAGATTAACTACATGTTCTCTCTGACAGTTCTAAATGCAAATTAGAACCTGCACTATGTATTACTTGGAAAAGATGGTATATATCAGTTTTCTTGATCTTTTGCAACCTTATGTTGTGCATCATATTTCCTATGTAGTAAATGTTCCAGTGGTTTGATATAACAAATAATTTGCAAATAACATATGTTTTGGCGCGTGTATGTTTTAGAGGAGTTTCATCTGTCTTTTTGTGATTGTAGTTATTGTAACAGCACTTAGAGAGGTGGTGTCTGGATTGGCTTTTTAACTCTCTTACAAGTTAAAAGTCAAAAGGCATAAGTTGGTAACCCCAACTTTTGACTCCTTTTTTTTTTTGTACTTTTTAAGCTTTTAAAAAGTGTTTAAAAGAACTTCTGATGTTATCCCAACACCTCCAAAACAAAAAAAATTTCTTTAAAGCCAAAAACCACTAAATTAAGTCAATCCAAACACCCCAAGTTTGAACCTCAAGTGGGTGTTTGGATTGACCTATTTTTTGTGACTTTTGGCTTTTAAGTTTTTTTTTTTAGTTTGGAAGTGTTAGGGTAAACTTTAAAAGTGCTAGAATTTAAATGTATGGAAAAAGCTAACCCAACTTATAGGTTTTGGCTTATAAGTCATTTTAGAAAACCCATCCAAACACCCCCTTAGACTCTTTCCACAATTATTTCCTGATTAATATCCAAATTATACTTACTCTACCAGTGGATTTCTTTTGGTCTAAGTAGATTTTTTCTTTCACCTTTAAATAGTTTCCTAAATTGTCTTCCGTATTTTTGCTAAAACATGTTTCCCCCCATCATTCTTGTAGACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCAGTAAGCATCTGTTGTACCTTTTCAATCAAATAGAATCATTTGTTATTGGTCATTTTCGTTCTCGATTAGTGCCATATTATTTGTGTATGATTCTACTAAATATGTCTTTTTCATTTTGTCGAAAATCGATTATGACCATGAGTAGTGCATGACATAAAGTTTATGTGAATAACAAACTTTTTGTGGAGATTCTCTCAGCGAACACTGCTATGTGCAGGGTAATAGAAAGTTAAAGGGCAGTTATTATGTCTTTGGTGACAGTAGTGAGGAATCTTTTTTGTAGTCAGGGTAATCCTTAGTTTGATGAAACACTATTATTTTTTAAAAAGAATTGTAAACAAGTAATGCAACTCAGACTGTTTTTTTTTTGGGTTCATCTAGAAGATGCAGTGTATTTTGGTGTCTTTGGTCTGTGATAATTATTGTGAATACAATTTGACCCGTAAATTTAACTTAAGATGTGCACACAGATCGTAGCACTGAGTGTGTCATCTCCTATGTGAAACTGATGATAACTTCATTACACTACTCATGTTGCTCATGGAAAACATGTGAATTAATTTCTTTGCATCTGCCTAGGATCCATCCTTCCGTGCAGACAAGCCTAAAAAGGCATGTCTGTCATACTCATGTTTTTTTCTTTTGATAATGAATACTCACGTCTATATTATGTTCTATTGTTCCAGGGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAGGTATTACTGTAGTCCGTTATTTTGTTTTAATCTCTTTTGGAACATCTGTAGCGAAGAGTTTACTTATTCATAAAGGGTCAAGTGTTCTTCTGTTAATTTCAATGGCTGCTGGAGGTCCATTGCAGTACTCATACAATTTTTCCCTCTGTACCTTGACGCAGATGCGATATTTGCTCCAGTGTGGAGCTAAATGTCGTACGCTGTGCAACCCTCTTTTTGGTCTTCCTTGTATTTGGAATTCCCTTATTTGGTGGACCAAATTTTGAAGGGCTTTCTGAATCATCCTTGTTCATGGCTGGGACTGCTGTTGGTGGTGTTAGTCTGCCACATGGTTTGACATGAAGAAGAGGCTTCCTCCTGCTCTTGCTTGCATATGCAAGTGTTGGCTGCCTGCGTAAGGGGGATATGCTTCTTCTTGTGTTAGCCACTTAAAAAAAACGTAGAAATAATCTAGGTGTAACTTCTTAGCTTGTATAATTGCTGACAGAGGTTTTCCAACTTTTACATTTCCAGATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACGGTATGAATTGTTATTTGACTATGTTTTGTAAAAAGTTTGATTCCAGAAGTAGATTTATCTTTTGATTTCCAATTACTGATGCAGGGCTAACTAATGGTTTAATTGTAAAAACCAAAAGTTAGCTTGGTCTGTCACATTTTTTTGCTATACTCCTTTACCATAATTTTCCTGTTAAGTCTGATTCTAAAGATCTCATCTTTTCGAATAGTTGTCTGGCCAAAAGTGAAACTTAGAGGGTAATCATTGTGTTTCTCATTTTGTGGTATCAAACACATATCTGCTTAATCCTATGCAATCTCTTTAAACGGTTATATGCTTCTTTTTCGTCAAACATAATTTTTGTTAACGTAAATAACCATGCACGAAGATAATGTTGTGCACTATTACGAAAAGGGGAAGGCCCCATTTACATTACTTGACAAAAAAACGAATGATTTTATTAAAACCTTTACAGAAGTATACTATTTTACACCTTCCCGTAGAACAATCAACAAATGTTGACATGCTAATGTTCAGGTCAGATGAACCAAGTGAATGTGTGTTTTAATTTTTTTGAAAATTGGCAATGCTGTATGGTTTTTGGTTAGTGTCTATATAGAGGGGGGACCCAACAGGCCCTCTGCTTTGACAATTTTCTTGAGAATTGACAATGCTGTATGTTTTTTGGTTAGTGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAGGTGCATTTCTGTTCTGTTCTCTTTTCTTGGACCGTGCTCATTAAAAATGCCTAAGAGTCTCTCTCTCCTCTAAATTGGATTAGAGGACTGAGATGTCATGGTAGAATGTGCGTCCCTTATTATCCCTGAGCACCAAGGGAGAACCTGTACTTGACATAATGAGGTTACATCATGTTTAATTAATTGTCATGTGCAGTACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAGGTTGGTGGAACTAAGAATCTTATAGTGTGCTTGATTATTTGTGGGTCACGTTTAATTCTCTTTTAATGGCTAACTGAATTAAAGAATATATATGCCTTCAACTTTTTATGGAGCGAGCATTTGGACCGACATATATTCCTTGCATGCTCTTCCCATGTTATTTCCCGTTAATCGATGGGGTGCAAACAGGCGTGTGGGGGTGGAGTTGTGTTTCTGATTTTGTTTTGGGTACCATTTGGTGATTTTGGGAGAGTGTAGGCCAAAAGTTACAACTTTGTACCTTTCATGTGTGATGTCATGATTTAGTTTGCAATGTAGATGGATGAGTAAAGTTCACATGGTATCCTTTCAATAAGATCTACTCTCCTAAGCTCCTTTCTTTTTCCATTTAGCTTTTATTGTTTGTTTGGGTTTGTAACTATGTGACCACTGAAAGTGGAAGAGCTATTTGATGAGACTTCATCAGATGATTGTACAAGAAGGAACTAGATAGATTAGAGAGAAAAAAAGAACAGATAAGAAAAAATGATAAATAAATAAAGGAATTTTGGGTTAGGTTAGCATCCGAGTTTGGGGCGGTATGGCATGGTTTGACATCATGCTGGAATTTTGTGGTTTTGACATTTGAAATATGCTCGAGCAGAGGTACCTCCAGAAACATTTTCTCTACCTTCATAAGGTAGAGGTAAGGTCTATGTACACTCTACCCACCCATCCCCTACCAGACCCCATGTGGGATTTCACTGGGTTATGTTATTGTACAATTAAAATATTTATGCATTCTTATAAATACTCTTTAAAGAGTAGTTTCTCCTAATATTTTTGGTAGTGGGATTTCTCTTCTATATAAGTTAAACAATTGATGAAACATTTGTGGCAGGGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAGGTTAGCTGTGTATCAATTGTATGTGGATATCTTATTTTCCTTTTTTTTTCCATGTTCTGACTAATTGGTTGTGATTTGTTTAGAGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTG</genome_strand>
        <mrna_strand>GGGTTTCTCTCTGCTTCTCCGCTGCTTCACTCATACCTTCGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG....................................................................................................................................................................................................TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG...................................................................................AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581960" ref_strand="+" ref_description="SGN-U581960 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|619894|emb|CAA58594.1| (e_value=0) Petunia Shaggy kinase 4 [Petunia x hybrida]; (*ATH) AT5G14640.1 (e_value=0) | Symbol: None | protein kinase family protein, similar to glycogen synthase kinase-3 homolog MsK-3 SP:P51139 from (Medicago sativa); contains Pfam profile PF00069: Protein kinase domain | chr5:4719087-4722282 REVERSE | Aliases: T15N1.130, T15N1_130; (*SWP) sp|Q8VZD5|KSG5_ARATH (e_value=0) Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5; ">
      <seq>gaagtgagaaaaatgaaagaagagcagcattgcagaagtctatagccaagaacctgaaaacttggccatacgccattttcacttccactttatttcttccgcgcttagggttttgctgtttcactcacaatttccatcgccaatgcgagcaattcacttcaccgctgcaggttttgagaagcagacaatctgtcacttgagtcataaccatttatcagtactataaggaagtttatttgttattcagtgacatggcttcgggcagtattatgtcttcagcagctggcaaacctattactgatgttgtgcttattgacaacctacctaaagaaataaatgcaatgaagatcaacgatgacaaagaaggaaaggaaatggaagccgctgttgtggatgggaatggaactgaaacaggtcacatcattgtgacgactattggggggaaaaatggtcagccaaagcagaccataagttacatggcggagcgtgtagttggacagggttcctttggaattgtgttccaggccaaatgccttgaaacaggagaaaccgtggcaataaaaaaggtcttgcaggacaagagatacaagaatcgggaattgcagactatgcgacttcttgatcatcctagtattgtttcactgaagcactgcttcttttcgaccacagaaaaggatgagctttatctaaatttggttctagaatttgtacctgaaactctctaccgtgtgttaagacattacagcaaagcaaaccaacggatgcctattatatatgtcaaactgtacacatatcagatatttagagctttggcttacatacatgggataggagtctgccacagggacatcaaacctcagaatttactggtcaacccccacacacatcagcttaagctttgtgattttgggagtgcaaaagtcctggtcaaaggcgagccaaacatttcatatatctgttcacgttattatcgtgcgcccgaactaatattcggagcaactgagtacaccaatgcaattgacatttggtctgtgggttgtgtcctagctgaactgcttcttggacagcccctctttcctggtgagagtggtgtagatcagctcgtcgaaataatcaaggttcttggaacaccaactcgtgaagaaatcaagtgtatgaatccaaattacaccgaatttaagttcccgcaaatcaaagctcacccctggcacaagatttttcacaagcggatgcctcctgaagctgtagatcttgtgataaggcttctacagtattctccaaatctgaggtgcacagcgttggaagctcttggtcacgctttctttgatgagctccgtgaccctaatgctcgtcctcctaatggtcgtccattgccatctctcttcaacttcagacctcaagagctgaaaggagcgtcttcagaactcttaaacaaactgttaccagaacatgctaaaaagcagtgtcccttacttggagtctagtctgtaagaatttgtttatcttttgtgaacttgatcctatttattatcactgttcagagaattaggaaaaccttttgacatctccattagtctattatataccacttcttcgccaattatgtaatcagctgattccccccgtactctacttaattatttgtaaatagtaatgtattacgggatttaccttattccttatcgacaattttatttttgtatgcacatcttagtttgcattttttactgcattttggtcgattctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="107527" stop="99754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107228" g_stop="107058" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106339" g_stop="106139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="371" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106050" g_stop="105958" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="464" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103793" g_stop="103734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="524" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103633" g_stop="103361" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="797" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102356" g_stop="102285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="869" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102212" g_stop="102156" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="926" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101441" g_stop="101301" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1067" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="101202" g_stop="101152" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1068" r_stop="1118" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="101079" g_stop="100984" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1214" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="100878" g_stop="100795" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1215" r_stop="1298" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="100608" g_stop="100506" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1401" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="100401" g_stop="100054" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1402" r_stop="1749" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U581960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107228" e_stop="107058"/>
          <exon e_start="106339" e_stop="106139"/>
          <exon e_start="106050" e_stop="105958"/>
          <exon e_start="103793" e_stop="103734"/>
          <exon e_start="103633" e_stop="103361"/>
          <exon e_start="102356" e_stop="102285"/>
          <exon e_start="102212" e_stop="102156"/>
          <exon e_start="101441" e_stop="101301"/>
          <exon e_start="101202" e_stop="101152"/>
          <exon e_start="101079" e_stop="100984"/>
          <exon e_start="100878" e_stop="100795"/>
          <exon e_start="100608" e_stop="100506"/>
          <exon e_start="100401" e_stop="100054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAGGTACTCTTTTGGTTTATGCAATAATCATAAATATGAATAATTGATCGCATGCTTCCTATGAAGGTTCTTAATGTTAAAAAGATGGCTGCAATTTTGTTGAAACCTATGTTTTTCTTCCAATTAAAAAATTTCGGAGGCTGTTATAGAAGTTCTTTTTAAGCGTCCAGGAGTTCTTTGAACAGTGGTAGCTGATTTTGCGATCTTCTAGAGACTTACTTGATTAATTTGAGTACTTAATCACGTATATGAACTAAGAAACCGGATTTCAGGATGATTAACTTTTGAAAATTAAATATAACATACTGCTCTATGTTTGCAACAAGCACAAAACTTCTGTTTGTTGCTTGTTGATAGTTGTCTCAGTATTAATGCAACAACTTCTGTTTGACTTATTCACTTCTCCTATCAAAATGTTAATAGAGTCTTGGTAGCACTAATAATATTTCATGTCTTTATATGTGGGAGTTATGCCTTATCATCATAGATATGGTCATATGGCGCACATGAACATTAAATATGTCAAGAAAGTGGTAGCACGCCTTTGACATGTTAACTTAACATCAAGTGGATGGGGTCCTGCTTGGATCAGTAATGTTCCTTGTTATATAAATGTCTACATACTGCAATTTTTGGATTCTTTTATCTCCTTTGATACAACAGTGAATGTAAGTGCGGCATCACCGGCGTCCTGTTTGAACTATGTATCTTTGTGATTCAGGTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAGGTTGTTCTTGGAAATAGGATGCATACTCTTTATCTAATTTCTTTTTTCCTTGTCTGCCTTAGCAATTCTCACTGTGATATCCTGATAGGAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAGGTGACATTTTTAATCATTTGATTCAACCTCGAAAATGTTATTTTACACTTGTAACTTATCTTTTATTGTTGTGCCTGTACCAAATACTAACATATCCAAAGGATAAGAATTTTCATGTTTGAGATTAAATGGCATTGATCTCGTGGATTTCATGAAATATCCCTTTGCTTTAGTTTCATTTTGGTTCTGAAATCAGTAAATAAAACTCAATCTATACTACGGCTGGTAATTTATTTATGGATCTGATGAGCAAATCTTTTCTCAATCAGTTTTGTTCCGGCTATGGAAATCAGAAAGTCTGATAATCCTGATTTTCATATTATCTTTTCTTTCACTTGTGATGTAACATTTTTTTTTTTTGAAACATGCAACTTTTTCACTTGTGATGTAACATAGGCAATTGAAAGAAAGACCTGTTCTTGTATTTTCCTTCGCGTCATTGCTTTATCCTCCTTTATCAATTTAGTAGATGTTTTGTACTCGAGTACCAAGTATTTTGCCTCTTTTTTTTTTTTTTTTACAAGGGAAACCCGAAGTCGCTACCCTTTGGGTGCGTAAGGGTAAAACCCCTGCTCCTACCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCACACTAGGCTTGCCAAGCCTAGTGCGACGAGCTCGGCCTAGAAGGCAAAAACCCTTACTTTCGCCTAGGGGTTTCGAACTTGAGACCTCCAACATGGAAATCTCAAGCTCAAACCACTAGGTCACCCCGAAGGGTAAGTATTTTGCCTCTTTTATTTTTTTTATTCTTTTTGATTTTTGAAACTAATAATAATAAGTCAAGAACAAATCGTAACTGTCTGATAGAGATGTTAAGCTATCGTACTAAACAAGAAGTAACTTTTGGCTAAAATGGTTCGGGACATCTTTGTAATTACCTCTTTTTCTTCAATTTCTTTTGACTTGCCAGGTACTGGTAATCGAGAAATTTTATTTTGTGTTTCACATCACTTCCATGTTTTCTATGAGGCACTTTAATTGCTTAACAAGTGACTTGTTCTTTTACCATTTCTTTGGTAATATAAAAGTTTCCAAAATAAGGCACTCTACTAGGACCCAAAAATTGCATGATATGCATACCCGTAGACGTGAATAACACTTGTTTTTCTCTTTTTCATGGCGGATATGGAGTTGTATTACTGGTCAACCTTACTTTAATATGCTTATGGTTGACGGTGCTTTGTATGAACTTACATGGCTTTTCTACTTATGCTTGTATATTTTCCATTGCATAATTTTGTTTCCCTTTTCTCTGATTAGGCATGGGATTATCCAAAATTCAATTTGTATGTTTTTTCTTTCCTTCCAATAAATTCATTGAATAAGTAGAACTATATTACTGTAAAAGCCTTATATCAAATTAATCTGCTGCATCATAACTCAGAATAACTTTGATAAATTTTGCTTTGTTTGGTGCTTAATTTAGAAAAGCTTTGCATTGCTTTTTCTGTTTCAATCTTTAATCAAACAAATTTAACCACAAGTGCACTTGTCAAGTAATTACAGCGTCTCACATGACTTATGTTGGTTATGTGAGACATAAAGTCAAGCTTCTCGCTGTAATCTAACAATCTCTTTTCTTTGTCCTCTCAAAAAAGGAAGCAGGCGTTAATATCAACTCCATACTTTCAGGGAAGTTTTAATGACATGAACTTAGTTAATCTTCTCATACCATATTGACATGGTGCTTTCCAGATGTACAAAGGGCTTATTTCCTGAACTTTAGAAATTACAAAATATTGTTCCCTGTAAAGTTCAGAATTGGACCTAACATGGGCGTCTAATGACCGGGATGACTTTCCTTGACTTTAACTTGATAGTATCTTTAAAGAGTCGGCGAACACTTTGGTCTCGGTCTTATTAAGGATGTAGCTTATAATAGTTAGGGATGAGTGCTAATTAGGCGAGGTTACACGGTCCTACTCAACATAATGTTGTATTTCTAGCCTGGGTTGATAATTGAAATGCTCTTCATTACCATGTCTTCGAGACCGGCACTGTTTGAGTGATGACCCATCCATACTTCACCCTACAAATAAATAAATCTCAACTGAGCAAGTTCTTTTAAATATACATGCTGATTGTAATCTTTGTGTTAAAAACTTTTTTGCTAATGTTTTCTTTGACATTCAGACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAGGTATAAGCTGTTCATTTGTCACAGATAATCACTGCCATAATCAAGAATCTTTACCCCCTTCACTAAATCAATTGTCATTGATTTCAAAGCTAAATTGCAGGCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAGGTATTCCATTTGAGTACATGTGCAAGTTCCTCTCATTGTACATAGAAAGAAATGAGCATAGGACGAATTTCATGTATGTTTCCTATAATTTAGCAAAACTGAATGGACCTGGCCCTATAGCTTATGATGATTGTGACTTCTGCTCGAGTGTGCCACAAGTTTCCATGGAAACCTCCTTTGCCTTTAACTCCCTTCATTGTCTTCAAATTGTTATGGTGTATGTAAAATTCTAAATGTTGTATCCTGTATCAAAATATTATGTCAATGCTAGCCTCTTCGATGTCAACCCTACTACAATATTTCAAGTTATAAGGCACCAAATCCTTCATGCTTAAATAACGAGAAATAGTATAGAAGGTTATCTTCGACCAGGGGAGCTAATAATTCTACCCAATTAGTGTTCTTTTCTATTTTCAGAAACAATGTAGTATTTATCTCATTGTCAAAATGTATAAGAAATAAATGAGAAAGGTATTTCAGTAAAATAATCTTCAAAACTAATGACTTGCTCTCAGTACCAGATTGGAGATGTAACTTTATTTTTTTTAAATGAAAGGAAGTTCATTCAGTTTCGACTAAACCACATATGGAGGAGGTTTGACTAATTCACGTTCTATGTCATTTTTCCATATACCGGTTTAATGTGATATTAATTGTTTTTTGGATATTTTCCTACTTCCCTTTCCAATCCCTTTGTCCTTTATGCAACCCTAAACTCAGATTGTGGCCTAAACCGTTGACCTCATGTGCAGTGGTAAAGGTTCTTCCATAGTTGTAATATCTTCAAATAACAAGTTCTCTGTTCTAGTAATAACTGTTAAAGATGATAATTTTTAGTGTTGTTGCGCATCTTGCACAGAGTAAATTTTGCATCATTTGTTTGTGGTGATTATGACATAGTTACTGTTGTTACTGTTTATGGCTAGTAGCAACACCTCTTCTTTACACCAACCTTAGCATATCTTTGTTGTGACCTATAGTTGGTTGATGATATACCTTAACAGATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTGGTTTGTACTTGAAGCTTAAACTCAATCAACTAAAAACATTGTGATATTTACTAATGCAATTTGCTATGGCAGGTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTGGTAATTTTCCTGATAGCTTGCAAAAGTCCTGTTATTACTTCTCAAGTCTGAGACCTAAGTTCGACTTTCACTTTCTGCTTCTTGTCGCTACAAAGTTTAGGAACAGATGTGATCATTTGATTGTGACTTGTTTGGAAAATTAGAACACAAATATTCTTTTTATTCATGTTTCCATGCATGTGAAACACTACAAGTTGTCATGATATAACTGTAAGTAGTTGATGACGTCTATCAGTTGTAGTTGTGCCTGCAGAAGAGGATTTCTTAAAATGAGTTATACTGGACGCTAAAGACAGTTCTGTCATATTTTGTAAGATAATTCAGGAATTGCTTGTGGTTATGTATTATCATAAGTATGTCACATTTATAATATGTTAGTACAAGAATTAGATGAAGTTGTATGATATCTTATTATGTCCATTCTCAGAAATTCAAGAAATGGAAGTGTTCCAGCATATTGTATGATCACTTCTTTTTATTTTTATGTAGCTGAAGATGTTCTTGTGAATTAGATATTTTGCTTGTTGGGATTTATCAAATCAAAAAAACTGATGAAGAAGTACCTTTTATAGCTCAACAATATGAAAATACTTTGATTCCTTTTCTCGACTTTATTCATCTTCCATATGTGATTGGTGGGTGGAATGATTGTCTTAGTCTTATCTAGTGATCTTATTTAAATAGTTCATCCTCATATTTTGGCCATCCTAACAGGTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAGGTTGTATTTATTGTGGAGTTCAATTCCTTTATTGAGAAAAAAAAATACTGTAATGATTGATTGTTTCACGCTAATCTTTTCTCTTCCAAAACTTGTAGCCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAGGTATCCATCTATTTGATTCAATGATGCCATCTTTAGTTTGCACAATTCAATAAATCAAAATGTCCTCTTTAGGTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAGGTAAGAACCCTGAGCTATAGTTCTGTGTAGAAGATACATTTTCTGATGCATTTCACGGCATGCATGCACATCAAGAAACTCATGACCGTACTCTGCATTGTACAGATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCGGTGAGTGTACCAAGTTCTCTCCCTAATTTTTTTCCTTATCCTCCAGTTCAAACTCAGTGTGGTGAGGGCAAAAGAAAGTAGTACTTGTTGAAAATTCCATATCATATTTTAGGCAGCAATCATTTGTGTCGGGAAACTTTATTATATTGTGATGCTTTTCTGTGATCTATTTGATTCATTTTGCAGTTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAGGTTTAATTTTTATCTTCTCCTCCAGTTTTGTTAATTGACTTCTCCACCCCACTCATATTCATATAGTAGTTGTTTTTCTTATTATGAGATTATGTCATTTGCAGAGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCTATT</genome_strand>
        <mrna_strand>GAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAA-TTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG........................................................................................GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG....................................................................................................GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG........................................................................GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG..................................................................................................CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG........................................................................GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG.........................................................................................................ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG..........................................................................................................................................................................................TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG........................................................................................................AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565237" ref_strand="+" ref_description="SGN-U565237 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|17433052|sp|Q9FV54|DEFC_SOLLC (e_value=2e-133) RecName:; (*ATH) AT5G14660.2 (e_value=3e-87)  Symbol: None | peptide deformylase, chloroplast / polypeptide deformylase 1B (PDF1B), identical to SP:Q9FUZ2 Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis thaliana}; supporting cDNA gi:11320965... ; (*SWP) sp|Q9FV54|DEFC_SOLLC (e_value=1e-134) Peptide deformylase, chloroplastic OS=Solanum lycopersicum GN=PDF1B; ">
      <seq>acgaaggacaaaattagtaatatttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaaaactgatggcattgggctgtctgcaccacaagttggaatgaatgttcaactaatggtatttaatgcagccggtgaacgtggagagggggaggagattgttctcgtcaatccacgtgtcagtagatattctaggaggattataccttatgaagaaggttgcttatcttttccaatgatacatggtgatgttaagagaccagagtcagttaaggttgacgcacaggacattaatggtacaaggtttgagataagcttgtctgctcttccagcacgagtcttccaacatgaatttgatcacctacagggagttcttttctttgacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggatttggcaaatcatgaatttactgggatctatgaaatcttctcagtatttgtatgatgaagcacaaaatgggattgccagcttttgctgaactttggtatatgccattaatttagacacttgtgctttgtgaaactagccaaaagtgtggcctctgaggtttatccttgtactgatactgctctgtttaggaatgatagggttaccacagaaatttgtatggaaaaagaactgttaagtacatttgatcaaatattgaacaccaagtttgtcgtttaacacttgggttgttgtagttcagtgtggagaaaaacaactcaagagaagttccataagttccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112042" stop="107992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111742" g_stop="111445" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="111212" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="437" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110721" g_stop="110529" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="630" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109492" g_stop="109382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="741" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108953" g_stop="108891" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="804" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108801" g_stop="108671" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="935" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108670" i_stop="108592" i_length="79">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108591" g_stop="108292" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1235" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U565237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111742" e_stop="111445"/>
          <exon e_start="111350" e_stop="111212"/>
          <exon e_start="110721" e_stop="110529"/>
          <exon e_start="109492" e_stop="109382"/>
          <exon e_start="108953" e_stop="108891"/>
          <exon e_start="108801" e_stop="108671"/>
          <exon e_start="108591" e_stop="108292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTGTTGATGTTTTAGTTGTTAGATACATTAGTTTTATTTTGTTTATAAGAAAAGCTTGCTATTCAGAGGACCTTAAAGGATGCTTGGCTTTGATATTATATATGCAGAACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAGGTACTTGGACCTGTAAACCATTCTTTGTCTGATCGCGAGTCAATCTACTGCCTTACTCTCTGTCTGTGAGAGAGATAATATGAACCCCGTGGTCGAGTGGGATCAAATATGATTGACGTAATCTGTCCAAATCCCTCAAGAATCTGCTATGCAGTTGATACTTTTCTTATTTAAAAAATAGTGTTTGTGTGTTGAATATATATATGTATCTTAAATGAAACTTAAGAAATGGTAGAGAGCTCCAAGTACGTTTTATTTTCTATCTTGTATAATATTGGTGTAAGATGAGCCTCAATGGAGTGACATACCCAATGACAATTTATATAGCCAAACCTAACTTGCTTGGAGTGGACGCATGATACCATGTACCAACTCATGACATCATGAGGTTAGTCGTGAATATATCTGAAAGGATGGTAAGGCACATCTGCAACCTCATGAGGGTTTTTCCTAGCATTTATGTTGTTGAATTGGTAGCTACACCATTCTGAAGAATTTGACTTGCTGTCTCTTGCTCCTGGAAAAGTTGCTCCAATGAGCTAGTCGAACTTTTACAGAAACCAGCAACTTCTATTGCTTTAGGAAAAATACAGATGTCATATCAGCAGTTCTACAGACTACATGTATCTAACTTTTTATGAATGGTCAATTTTGTTGTTGTGCTTCAGGAATGTAAGATAGACAGCATCTCAAGGACTTATGCCAAAGACATCCTAATCCTCTAGTTTGCAAGTGTCCCTATTGAACTAGTAACTTCCAACTTATACATCATAATTCTTCTTCTGGCTCATTAACCTGGTAAAGAGCTTACATAATAGAGCTGCTTGGATTTTGGGTGACTTGTCCAAAAAAATTCAAAAGTATTTGAAGTAGAACTGTAATCCTAAAACAGTTTGCATTTTACAAAAGCTTACCTGGTGAATCTTTGTTGCTAACTGCTTTAGTGTCTAGGAACCTGAATCTGCTATTTGAATTGTGAAGTTTTCTGACTTTCTAAATTGTTACAAGATTATTTATATATGTTGTGTGTTTGCAGAGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAGGTGTTTCTTCATTTCTATAAATGCAGGATCTGTTTTAACTGTACCTTCCCAAAAATTACTGTTGTTTGGGGTTAGCAGGCTCTCCTGCTCATACATTTTCCCATTGCATTTACTTTTTTTTTTTCGCATTTACCTTTTATTCAGAAAATATGTTCTATATGTCTTTCCAGTTGCAGTAACTAGACACTGAGCAGTGTAATATAAAAAAAGTAAGAACCCGATAGGCTCGAGTTCAGGAGTCTTCCCTGGTCGATTCTTTTTATAAGACTACTTAACAGTGCTACTGGTTGAATTCAGATATCTGTAGTACTGTATAGTGTGTATGCAGTCTTTGATGAATATTCATTACATGAATGCACAATTTGCTTTAAATACAAGACCTAGTTCCCGTAAGACATTTCTTTTTAACTTAGGTCAGCAATGTGCAGGGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</genome_strand>
        <mrna_strand>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG...............................................................................TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565238" ref_strand="+" ref_description="SGN-U565238 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|17433052|sp|Q9FV54|DEFC_SOLLC (e_value=2e-19) RecName:; (*ATH) AT5G14660.2 (e_value=2e-13)  Symbol: None | peptide deformylase, chloroplast / polypeptide deformylase 1B (PDF1B), identical to SP:Q9FUZ2 Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis thaliana}; supporting cDNA gi:11320965... ; (*SWP) sp|Q9FV54|DEFC_SOLLC (e_value=1e-20) Peptide deformylase, chloroplastic OS=Solanum lycopersicum GN=PDF1B; ">
      <seq>gacaaaatgactgacgaagtcctggacaccattcgtgaaaaattagtggcgctagaaaagaaatatgaagataggactgggttgccaacccctgaaagcataaatacacgaaaaataaagaaggctgctgttggatttggcaaatcatgaatttactgggatctatgaaatcttctcaggtttctgatgccttacctttatttcatttgcttattgttttactgcatgtgctttacacttgctacttgatgtatgcagtatttgtatgatgaagcacaaaatgggattgccagcttttgctgaactttggtatatgccattaatttagacacttgtgctttgtgaaactagccaaaagtgtggcctctgaggtttatccttgtactgatactgctctgtttaggaatgatagggttaccacagaaatttgtatggaaaaagaactgttaagtacatttaatcaaatattgaacaccaagtttgtcgtttaacacttgggttgttgtagttcagtgtggagaaaaacaactcaagagaagttccataagttccccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="109238" stop="107993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108938" g_stop="108891" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108801" g_stop="108293" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="557" r_length="509" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U565238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108938" e_stop="108891"/>
          <exon e_start="108801" e_stop="108293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTGGTTAGTGGATGATTGTTAAAGTTGGAATAAACATCTGGCAGGTGTTGCACCAAGTATTTTGTTGCTCATCTTTGTAACTGATTTTACAGGCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGC</genome_strand>
        <mrna_strand>GACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG.........................................................................................GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTAATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596444" ref_strand="+" ref_description="SGN-U596444 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|17433052|sp|Q9FV54|DEFC_SOLLC (e_value=5e-42) RecName:; (*ATH) AT5G14660.2 (e_value=1e-17)  Symbol: None | peptide deformylase, chloroplast / polypeptide deformylase 1B (PDF1B), identical to SP:Q9FUZ2 Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis thaliana}; supporting cDNA gi:11320965... ; (*SWP) sp|Q9FV54|DEFC_SOLLC (e_value=4e-43) Peptide deformylase, chloroplastic OS=Solanum lycopersicum GN=PDF1B; ">
      <seq>ttgcatctgtagaggtgaaattgtccgttttgttgtgtggcaaatggcaatggctgccgcaagttgggcatcttcttcttcgttcactcgctttctccggcctctcctcagtcggaactcgtctccctcccctatcagttacagtcttcatcgatataaatcagctaactgtttatttttctccgcaagcagtaataaacctccaaaattagctgtttatgctcaagctaggcgagttttatcttccaaaaccaaaggagatgaaatagcaactcctgctgacttgagcttcgtggttccattgaaaattgtggagtatccagacccgattttaagagcgaagaataagaggattgacaattttgacgctaatttgaagaagttagttgatgaaatgttcgatattatgtacaagtgagtccatccgtttcttacaatccataactacttgtccttttgagttttcataacttattttaatgcaaaaatcagttgttcaatcagtaaactggataactcaatctattggagcttcgcaaagcatgactgatcccaaacctagatataggaagagattattcttggtggaggtctaattatgttgaaaataaaacaaaaatagttatggcgacacaaatttagaataatgnaatccgactagtttggaattgaggtgtaactgactgatttattgaattaanaatagatggattttgacncaaatttagaatagnnnntccnactagttgggaatngnnngnantgactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="-" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="112019" stop="110593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111719" g_stop="111445" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111350" g_stop="110850" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="773" r_length="498" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="-" ref_id="SGN-U596444" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111719" e_stop="111445"/>
          <exon e_start="111350" e_stop="110850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTCGTAAGCATCCTTCTAGATTCTGACCTAAAAATCAATCTATTTGTGGTCAATTTTCTTTTTCGCAGATTGAAATTCTTCTTTTTGTGTGTGGTAGCTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTT</genome_strand>
        <mrna_strand>TTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC..............................................................................................CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGNAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAANAATAGATGGATTTTGACNCAAATTTAGAATAG-NNNNTCCNACTAGTTGGGAATNG-NNNG-NANTGACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602726" ref_strand="+" ref_description="SGN-U602726 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|75107026|sp|P81391|MYB05_ANTMA (e_value=1e-45) Myb-related; (*ATH) AT5G40350.1 (e_value=3e-42) | Symbol: None | myb family transcription factor (MYB24), similar to Myb26 GI:1841475 from (Pisum sativum) | chr5:16155774-16158362 REVERSE | Aliases: MPO12.60, MPO12_60; (*SWP) sp|P81391|MYB05_ANTMA (e_value=1e-46) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305; ">
      <seq>gtttttcttcacatcccattcctcttctcttctttattatataaaaaaaatggataaaagaacatgtgattctcaagatgttgaagttaggaaaggtccttggactatggaagaagatttgattctcatcaattacattgctaatcatggtgaaggtgtttggaattccctcgctcgatccgctggtttgaagcgtactggaaaaagttgtagacttagatggcttaattatctccgacctgatgttcggaggggaaatattacaccggaggaacaattgttgatcatggaactacatgccaagtggggaaaccggtgagttgatttctttttctagctagggttttgataattaaataaaatgatgaaattatataaaagaaaatttggaaaattgtagaaatttctccttcatttttttaaaaatgaaaaataaaaaaaatctcccatgtgtttgtatgtgttggatggataaagaggaattgtcccaaaatctcttagaactagatttgacatcatgaaagagagtgatggggaatttacaacgtgtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="120705" stop="121932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121004" g_stop="121188" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121263" g_stop="121632" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="555" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U602726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121004" e_stop="121188"/>
          <exon e_start="121263" e_stop="121632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTGGTACTAATTGATCGTCATGTTTAGATTGGGGCTTAATTATGTTGTATATATTTAATTTTTTTCGTGTGTAATAGGTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAATTTACAACGTGTTTAAT</genome_strand>
        <mrna_strand>GTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG..........................................................................GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAATTTACAACGTGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573604" ref_strand="+" ref_description="SGN-U573604 Tomato 200607#2 [9 ESTs aligned] ">
      <seq>ttactgtggatccagaaggctgcaggtttgatttgacagtcgaaaaatctttaagcttaatcatgtaaagtatattctatccatattaattaacatgcacaaattacaaaattaaaacatgtcacccctacattaaattttgtcaatttattattctctcttcctatagatataggtaaaataaaaaaatataggtcctcattcagccaccataattagtaaagcaaggacaattgttcgacaggaatttggccttccattattaccattgaatatgacatatgaatttaagtttttgaacttttgctttttgagtttttcaaatatgttataatatctccttaatatatatgcactttacacatgtgtaaaaaacaaaaattatttattttttcatattatcaatatatataaaaaaatttaaaaaataattacggtctcggttctatcaaatgaaaaatgataagaagcaaaggcttgcaaatagctttgattgaagtagacggataacttattgttttggttcatcacaaaaaacaaggggtccttcttgtaccttagatgtttttagtgtatatcgaaaataatatttgaaatagaaaaaaattcgtaaaaattatgtttgatacggagaaagtcattttccaagtaagtattagaaagtcatttgctggtatgcatgtatttaactgttaaaaggggattttttttctttcaaaaacctctctttataatccaatttttttcataattttaggatcgagaatatgaggtaattatcatttgagcaactctcggttatccctctctatatatagcaaaacattgaaactggttaaaatcacttccccttgaggatagtttaagttatgtatatataaattaagtttgatatgataactcacaaatagaaagaataaccttttacaatcaattaaattgagctgataatgtaaaatatcggtatatataactgaaatatgcatgtatacaagcactgggacttcaaatatcagccacagaacatgtatacaacctcgattctttaccaaaaattaaacgtgacttaaaagtttaatttcaatataatctgaaataagtagttttcattcatttcatatttagtgtcttaatttcactatacacaaaggttaaagaatgaaaagaagataatctgtgatcttaaatataattaataatgtatattttaaattttattatcttaaatttatcaggaaaaatattgaaattgaaatacttattaaatatatatataaaaaaaccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011A02-9AwZV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0011A02.3" temp_strand="+" temp_description="C02HBa0011A02.3  AC215353.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011A02 sequenced_by:kribb upload_account_name:korea">
        <position start="121810" stop="123677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122113" g_stop="123377" g_length="1265"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="1288" r_length="1264" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011A02.3" gen_strand="+" ref_id="SGN-U573604" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1265</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122113" e_stop="123377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTC</genome_strand>
        <mrna_strand>GG-TTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCACTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3511" PGL_stop="5739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3511" e_stop="3951"/>
            <exon e_start="4028" e_stop="4108"/>
            <exon e_start="4613" e_stop="4962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.329" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="3511" e_stop="3951" e_length="441"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.329">
            <gDNA_intron_boundary i_start="3952" i_stop="4027" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4028" e_stop="4108" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="4613" e_stop="4962" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3511" stop="3951"/>
              <exon start="4028" stop="4108"/>
              <exon start="4613" stop="4962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAGGTAATTTATAGTTCTTGTGTTCTCCTGATTCTTCATGTTGTAATTATCATAGAAGTTTTATTCTTGATTAGTATTAGTAGTTCATAAGGCATATTTAACTGATAGTTCGTATGATTAAATTGATGTTTTCTGTGTTGTTGAAATGATGAAAGCTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA : TTTTGATGATAACTGTCAGATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG : GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATATCAGAGTTAAAGCCAAGGACCTTGGTGAAAAGGCTTTGATCTTTCACTTTTCAGGATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT</gDNA_template>
            <first_frame> K  W  K  N  N  R  S  G  V  G  R  R  *  M  D  S  L  S  L  Q  S  H  L  S  L  R  R  *  F  I  V  L  V  F  S  *  F  F  M  L  *  L  S  *  K  F  Y  S  *  L  V  L  V  V  H  K  A  Y  L  T  D  S  S  Y  D  *  I  D  V  F  C  V  V  E  M  M  K  A  Q  P  V  H  T  Q  L  E  D  Q  E  L  Q  F  L  N  L  *  N  C  L  R  V  L  Q  N  P  D  I  Y  L  R  G  I  V  W  L  L  Q  A  G  R  G  *  R  G  *  K  K  A  T  E  *  *  L  W  I  M  G  P  V  E  K  S  P  I  S  C  *  :  F  *  *  *  L  S  D  G  F  V  A  M  F  R  E  R  T  K  Y  P  I  V  E  P  A  H  M  :  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  V  S  F  F  L  C  S  L  N  S  Q  V  V  I  A  D  V  E  F  A  D  D  V  *  C  *  V  L  T  *  Y  Q  S  *  S  Q  G  P  W  *  K  G  F  D  L  S  L  F  R  I  F  L  H  *  Q  L  K  L  Q  R  S  I  Q  E  Y  H  M  S  L  Q  H  L  L  A  F  M  N  Y  L   </first_frame>
            <second_frame>  N  G  R  I  T  E  A  V  L  E  E  G  E  W  I  R  C  L  Y  N  L  I  L  V  *  G  G  N  L  *  F  L  C  S  P  D  S  S  C  C  N  Y  H  R  S  F  I  L  D  *  Y  *  *  F  I  R  H  I  *  L  I  V  R  M  I  K  L  M  F  S  V  L  L  K  *  *  K  L  N  Q  Y  I  P  S  *  R  T  R  N  C  S  S  *  I  C  K  I  A  *  G  S  F  K  I  Q  I  F  T  S  E  V  L  Y  G  Y  F  K  Q  G  G  V  E  G  D  R  R  R  R  R  S  D  N  C  G  S  W  V  P  *  K  R  V  Q  S  H  A  N :   F  D  D  N  C  Q  M  D  L  *  Q  C  L  E  R  E  P  N  T  P  L  W  S  L  H  T  W :   S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R  Y  L  S  F  Y  V  V  *  I  L  K  L  *  *  L  M  *  N  L  P  M  M  Y  S  A  R  F  *  P  D  I  R  V  K  A  K  D  L  G  E  K  A  L  I  F  H  F  S  G  Y  S  F  I  N  S  *  S  C  K  G  A  S  R  S  T  I  C  H  Y  S  T  S  W  P  S  *  I  T  C  </second_frame>
            <third_frame>   M  E  E  *  P  K  R  C  W  K  K  V  N  G  F  V  V  F  T  I  S  S  *  F  E  E  V  I  Y  S  S  C  V  L  L  I  L  H  V  V  I  I  I  E  V  L  F  L  I  S  I  S  S  S  *  G  I  F  N  *  *  F  V  *  L  N  *  C  F  L  C  C  *  N  D  E  S  S  T  S  T  Y  P  A  R  G  P  G  I  A  V  P  E  F  V  K  L  L  K  G  P  S  K  S  R  Y  L  P  Q  R  Y  C  M  A  T  S  S  R  E  G  L  K  G  I  E  E  G  D  G  V  I  I  V  D  H  G  S  R  R  K  E  S  N  L  M  L   : I  L  M  I  T  V  R  W  I  C  S  N  V  *  R  E  N  Q  I  P  H  C  G  A  C  T  H   : G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P  G  I  F  L  F  M  *  S  E  F  S  S  C  D  S  *  C  R  I  C  R  *  C  I  V  L  G  F  D  L  I  S  E  L  K  P  R  T  L  V  K  R  L  *  S  F  T  F  Q  D  I  P  S  L  T  A  E  A  A  K  E  H  P  G  V  P  Y  V  I  T  A  P  L  G  L  H  E  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3732" stop="3951"/>
                    <exon start="4028" stop="4068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDESSTSTYPARGPGIAVPEFVKLLKGPSKSRYLPQRYCMATSSREGLKGIEEGDGVIIVDHGSRRKESNLMLILMITVRWICSNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4040" stop="4108"/>
                    <exon start="4613" stop="4795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDGFVAMFRERTKYPIVEPAHMELAEPSIRDAFSLCVQQGARRVIVSPFFLSPGRHWNQVSFFLCSLNSQVVIADVEFADDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4220" e_stop="4815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4220" e_stop="4815" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4220" stop="4815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAAAATACTGTCGAGGAAAGAAACTGCAGTGCAGAAGGGTAAGAAATGAGAAGTCTTGCAATATGTTTGGATGTTAAAGAGCAAAAGCAAAGAAAGAAAACAAAAGCATACACCTTTTCAGAAAAGAAACAATAGAAATGATATAAATTTGCGTATGAGAAATCATCTTAAAATATCTCATGAGAAAATCTGGCAAAATAAAACAAAGATTGATAGGATAAAGGGATCCCTTTAAGGTTGGATGGTTGGGAAGTGGCAATAGGACTAAGAATGTGCTAGGAGTAAGAAAATCCTAATATTTGCATGTTAATATCTCTATTTTCCTTTCTTTTAATACTCTCAAAAAGTTGGAACTTTCATTTTGCTTTGTATATCTTTTATGACATTTAGGAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAGGTATCTTTCTTTTTATGTAGTCTGAATTCTCAAGTTGTGATAGCTGATGTAGAATTTGCCGATGATGTATAGTGCTAGGTTTTGACCTGATA</gDNA_template>
            <first_frame> D  *  N  T  V  E  E  R  N  C  S  A  E  G  *  E  M  R  S  L  A  I  C  L  D  V  K  E  Q  K  Q  R  K  K  T  K  A  Y  T  F  S  E  K  K  Q  *  K  *  Y  K  F  A  Y  E  K  S  S  *  N  I  S  *  E  N  L  A  K  *  N  K  D  *  *  D  K  G  I  P  L  R  L  D  G  W  E  V  A  I  G  L  R  M  C  *  E  *  E  N  P  N  I  C  M  L  I  S  L  F  S  F  L  L  I  L  S  K  S  W  N  F  H  F  A  L  Y  I  F  Y  D  I  *  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  V  S  F  F  L  C  S  L  N  S  Q  V  V  I  A  D  V  E  F  A  D  D  V  *  C  *  V  L  T  *   </first_frame>
            <second_frame>  I  K  I  L  S  R  K  E  T  A  V  Q  K  G  K  K  *  E  V  L  Q  Y  V  W  M  L  K  S  K  S  K  E  R  K  Q  K  H  T  P  F  Q  K  R  N  N  R  N  D  I  N  L  R  M  R  N  H  L  K  I  S  H  E  K  I  W  Q  N  K  T  K  I  D  R  I  K  G  S  L  *  G  W  M  V  G  K  W  Q  *  D  *  E  C  A  R  S  K  K  I  L  I  F  A  C  *  Y  L  Y  F  P  F  F  *  Y  S  Q  K  V  G  T  F  I  L  L  C  I  S  F  M  T  F  R  S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R  Y  L  S  F  Y  V  V  *  I  L  K  L  *  *  L  M  *  N  L  P  M  M  Y  S  A  R  F  *  P  D  </second_frame>
            <third_frame>   L  K  Y  C  R  G  K  K  L  Q  C  R  R  V  R  N  E  K  S  C  N  M  F  G  C  *  R  A  K  A  K  K  E  N  K  S  I  H  L  F  R  K  E  T  I  E  M  I  *  I  C  V  *  E  I  I  L  K  Y  L  M  R  K  S  G  K  I  K  Q  R  L  I  G  *  R  D  P  F  K  V  G  W  L  G  S  G  N  R  T  K  N  V  L  G  V  R  K  S  *  Y  L  H  V  N  I  S  I  F  L  S  F  N  T  L  K  K  L  E  L  S  F  C  F  V  Y  L  L  *  H  L  G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P  G  I  F  L  F  M  *  S  E  F  S  S  C  D  S  *  C  R  I  C  R  *  C  I  V  L  G  F  D  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3515" e_stop="3590"/>
            <exon e_start="3743" e_stop="3951"/>
            <exon e_start="4047" e_stop="4108"/>
            <exon e_start="4613" e_stop="4723"/>
            <exon e_start="4870" e_stop="4962"/>
            <exon e_start="5517" e_stop="5739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3515" e_stop="3590" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.893">
            <gDNA_intron_boundary i_start="3591" i_stop="3742" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3743" e_stop="3951" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.950">
            <gDNA_intron_boundary i_start="3952" i_stop="4046" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4047" e_stop="4108" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="4109" i_stop="4612" i_length="504"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4613" e_stop="4723" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="4724" i_stop="4869" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4962" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="4963" i_stop="5516" i_length="554"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5517" e_stop="5739" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3515" stop="3590"/>
              <exon start="3743" stop="3951"/>
              <exon start="4047" stop="4108"/>
              <exon start="4613" stop="4723"/>
              <exon start="4870" stop="4962"/>
              <exon start="5517" stop="5739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGAATAACCGAAGCGGTGTTGGAAGAAGGTGAATGGATTCGTTGTCTTTACAATCTCATCTTAGTTTGAGGAG : CTCAACCAGTACATACCCAGCTAGAGGACCAGGAATTGCAGTTCCTGAATTTGTAAAATTGCTTAAGGGTCCTTCAAAATCCAGATATTTACCTCAGAGGTATTGTATGGCTACTTCAAGCAGGGAGGGGTTGAAGGGGATAGAAGAAGGCGACGGAGTGATAATTGTGGATCATGGGTCCCGTAGAAAAGAGTCCAATCTCATGCTAA : ATGGATTTGTAGCAATGTTTAGAGAGAGAACCAAATACCCCATTGTGGAGCCTGCACACATG : GAGCTAGCAGAACCATCTATCAGAGACGCATTTAGTTTATGCGTTCAACAAGGAGCACGTCGAGTTATTGTGAGCCCCTTTTTCCTTTCTCCTGGACGACATTGGAACCAG : GATATTCCTTCATTAACAGCTGAAGCTGCAAAGGAGCATCCAGGAGTACCATATGTCATTACAGCACCTCTTGGCCTTCATGAATTACTTGTT : GATGTTGTGAATGATAGGATCAATCATTGCCTAAGTCATATTGCCGGGAAAGCAGATGAGTGTTCAGTTTGTGCTGGAACTGGAAAATGTCAGCTCCGCCAGTGACATACTTGTGAAGCTTAGCAAGACTTTGTTATGTAGAGAGACTTTGTTACCTATGCCAGTTGACTTATTAGGGTCTGAATGCTGAGTTACTGCCTCTTGGCAGTAGGTTCAATTATCC</gDNA_template>
            <first_frame> G  R  I  T  E  A  V  L  E  E  G  E  W  I  R  C  L  Y  N  L  I  L  V  *  G   : A  Q  P  V  H  T  Q  L  E  D  Q  E  L  Q  F  L  N  L  *  N  C  L  R  V  L  Q  N  P  D  I  Y  L  R  G  I  V  W  L  L  Q  A  G  R  G  *  R  G  *  K  K  A  T  E  *  *  L  W  I  M  G  P  V  E  K  S  P  I  S  C  *  :  M  D  L  *  Q  C  L  E  R  E  P  N  T  P  L  W  S  L  H  T  W :   S  *  Q  N  H  L  S  E  T  H  L  V  Y  A  F  N  K  E  H  V  E  L  L  *  A  P  F  S  F  L  L  D  D  I  G  T  R :   I  F  L  H  *  Q  L  K  L  Q  R  S  I  Q  E  Y  H  M  S  L  Q  H  L  L  A  F  M  N  Y  L  L :   M  L  *  M  I  G  S  I  I  A  *  V  I  L  P  G  K  Q  M  S  V  Q  F  V  L  E  L  E  N  V  S  S  A  S  D  I  L  V  K  L  S  K  T  L  L  C  R  E  T  L  L  P  M  P  V  D  L  L  G  S  E  C  *  V  T  A  S  W  Q  *  V  Q  L  S </first_frame>
            <second_frame>  E  E  *  P  K  R  C  W  K  K  V  N  G  F  V  V  F  T  I  S  S  *  F  E  E  :  L  N  Q  Y  I  P  S  *  R  T  R  N  C  S  S  *  I  C  K  I  A  *  G  S  F  K  I  Q  I  F  T  S  E  V  L  Y  G  Y  F  K  Q  G  G  V  E  G  D  R  R  R  R  R  S  D  N  C  G  S  W  V  P  *  K  R  V  Q  S  H  A  K :   W  I  C  S  N  V  *  R  E  N  Q  I  P  H  C  G  A  C  T  H   : G  A  S  R  T  I  Y  Q  R  R  I  *  F  M  R  S  T  R  S  T  S  S  Y  C  E  P  L  F  P  F  S  W  T  T  L  E  P   : G  Y  S  F  I  N  S  *  S  C  K  G  A  S  R  S  T  I  C  H  Y  S  T  S  W  P  S  *  I  T  C   : *  C  C  E  *  *  D  Q  S  L  P  K  S  Y  C  R  E  S  R  *  V  F  S  L  C  W  N  W  K  M  S  A  P  P  V  T  Y  L  *  S  L  A  R  L  C  Y  V  E  R  L  C  Y  L  C  Q  L  T  Y  *  G  L  N  A  E  L  L  P  L  G  S  R  F  N  Y   </second_frame>
            <third_frame>   K  N  N  R  S  G  V  G  R  R  *  M  D  S  L  S  L  Q  S  H  L  S  L  R  S :   S  T  S  T  Y  P  A  R  G  P  G  I  A  V  P  E  F  V  K  L  L  K  G  P  S  K  S  R  Y  L  P  Q  R  Y  C  M  A  T  S  S  R  E  G  L  K  G  I  E  E  G  D  G  V  I  I  V  D  H  G  S  R  R  K  E  S  N  L  M  L   : N  G  F  V  A  M  F  R  E  R  T  K  Y  P  I  V  E  P  A  H  M  :  E  L  A  E  P  S  I  R  D  A  F  S  L  C  V  Q  Q  G  A  R  R  V  I  V  S  P  F  F  L  S  P  G  R  H  W  N  Q  :  D  I  P  S  L  T  A  E  A  A  K  E  H  P  G  V  P  Y  V  I  T  A  P  L  G  L  H  E  L  L  V  :  D  V  V  N  D  R  I  N  H  C  L  S  H  I  A  G  K  A  D  E  C  S  V  C  A  G  T  G  K  C  Q  L  R  Q  *  H  T  C  E  A  *  Q  D  F  V  M  *  R  D  F  V  T  Y  A  S  *  L  I  R  V  *  M  L  S  Y  C  L  L  A  V  G  S  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3550" stop="3590"/>
                    <exon start="3743" stop="3951"/>
                    <exon start="4047" stop="4108"/>
                    <exon start="4613" stop="4723"/>
                    <exon start="4870" stop="4962"/>
                    <exon start="5517" stop="5621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDSLSLQSHLSLRSSTSTYPARGPGIAVPEFVKLLKGPSKSRYLPQRYCMATSSREGLKGIEEGDGVIIVDHGSRRKESNLMLNGFVAMFRERTKYPIVEPAHMELAEPSIRDAFSLCVQQGARRVIVSPFFLSPGRHWNQDIPSLTAEAAKEHPGVPYVITAPLGLHELLVDVVNDRINHCLSHIAGKADECSVCAGTGKCQLRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21719" PGL_stop="20976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21719" e_stop="20976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21719" e_stop="20976" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21719" stop="20976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTTTCTTTTTCTTTTTCTTTTTCATATTCTTCAGATTATTAAATTTAGTCGAACCACCCACACGGAACTTCGTCACTCCGAAAAACACTTTCATAAAATGAAATTCCGAAATCCAGAATTTTCAGCAATTTGAGAAACAACAAAAATCACTTTATTTCACTCCAAAGTATTCAAATTTGTATTCATGGTTAACTGCAAATTTTCAAGTTTCAAATATCATTTTTGTACTTTGATACAATGAAATATGGCCAAAAACGCATAGTAACTTGAAATCAAGCATTTTACTGCATCAAACGATCATCTACTACAGCAAATATAACCATAGAAAATGAAGAAGAAGGAGAAAAAACAGAGGAAGGGAAGAAGCAAACCTTAGCAAGCAGATCGGTGTAAGACGGTTACGCAAAATAACAGGGATACGAGAAAAAAAGGTTTTTGGCTGAATTCTAGAAGCCACCGAAAAGGGTATATTTGGTAAAACGAGCTCACTCTATTTATGGCGGTCTACACGAGAATGGAGAACCATCTAGTATTTTGATGAAATTTGACTACCATTTGTATGGCCATTTGGATAAATTTTTACGAGTAATTTTCTTAAATAGTCCCAAAAAATCATTTAATAATATTATTAATATTTGTTTTATGATTATAAATTATTTAATTTTATTTTTTTAAAAAAATATATTTGACACACAAAAAAAATATTGTCTTTTCTATTAGAATGTTATGTCACTTTTTTAAT</gDNA_template>
            <first_frame> R  F  L  F  L  F  L  F  H  I  L  Q  I  I  K  F  S  R  T  T  H  T  E  L  R  H  S  E  K  H  F  H  K  M  K  F  R  N  P  E  F  S  A  I  *  E  T  T  K  I  T  L  F  H  S  K  V  F  K  F  V  F  M  V  N  C  K  F  S  S  F  K  Y  H  F  C  T  L  I  Q  *  N  M  A  K  N  A  *  *  L  E  I  K  H  F  T  A  S  N  D  H  L  L  Q  Q  I  *  P  *  K  M  K  K  K  E  K  K  Q  R  K  G  R  S  K  P  *  Q  A  D  R  C  K  T  V  T  Q  N  N  R  D  T  R  K  K  G  F  W  L  N  S  R  S  H  R  K  G  Y  I  W  *  N  E  L  T  L  F  M  A  V  Y  T  R  M  E  N  H  L  V  F  *  *  N  L  T  T  I  C  M  A  I  W  I  N  F  Y  E  *  F  S  *  I  V  P  K  N  H  L  I  I  L  L  I  F  V  L  *  L  *  I  I  *  F  Y  F  F  K  K  I  Y  L  T  H  K  K  N  I  V  F  S  I  R  M  L  C  H  F  F  N </first_frame>
            <second_frame>  V  F  F  F  F  F  F  F  I  F  F  R  L  L  N  L  V  E  P  P  T  R  N  F  V  T  P  K  N  T  F  I  K  *  N  S  E  I  Q  N  F  Q  Q  F  E  K  Q  Q  K  S  L  Y  F  T  P  K  Y  S  N  L  Y  S  W  L  T  A  N  F  Q  V  S  N  I  I  F  V  L  *  Y  N  E  I  W  P  K  T  H  S  N  L  K  S  S  I  L  L  H  Q  T  I  I  Y  Y  S  K  Y  N  H  R  K  *  R  R  R  R  K  N  R  G  R  E  E  A  N  L  S  K  Q  I  G  V  R  R  L  R  K  I  T  G  I  R  E  K  K  V  F  G  *  I  L  E  A  T  E  K  G  I  F  G  K  T  S  S  L  Y  L  W  R  S  T  R  E  W  R  T  I  *  Y  F  D  E  I  *  L  P  F  V  W  P  F  G  *  I  F  T  S  N  F  L  K  *  S  Q  K  I  I  *  *  Y  Y  *  Y  L  F  Y  D  Y  K  L  F  N  F  I  F  L  K  K  Y  I  *  H  T  K  K  I  L  S  F  L  L  E  C  Y  V  T  F  L   </second_frame>
            <third_frame>   F  S  F  S  F  S  F  S  Y  S  S  D  Y  *  I  *  S  N  H  P  H  G  T  S  S  L  R  K  T  L  S  *  N  E  I  P  K  S  R  I  F  S  N  L  R  N  N  K  N  H  F  I  S  L  Q  S  I  Q  I  C  I  H  G  *  L  Q  I  F  K  F  Q  I  S  F  L  Y  F  D  T  M  K  Y  G  Q  K  R  I  V  T  *  N  Q  A  F  Y  C  I  K  R  S  S  T  T  A  N  I  T  I  E  N  E  E  E  G  E  K  T  E  E  G  K  K  Q  T  L  A  S  R  S  V  *  D  G  Y  A  K  *  Q  G  Y  E  K  K  R  F  L  A  E  F  *  K  P  P  K  R  V  Y  L  V  K  R  A  H  S  I  Y  G  G  L  H  E  N  G  E  P  S  S  I  L  M  K  F  D  Y  H  L  Y  G  H  L  D  K  F  L  R  V  I  F  L  N  S  P  K  K  S  F  N  N  I  I  N  I  C  F  M  I  I  N  Y  L  I  L  F  F  *  K  N  I  F  D  T  Q  K  K  Y  C  L  F  Y  *  N  V  M  S  L  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21267" stop="21043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPPKRVYLVKRAHSIYGGLHENGEPSSILMKFDYHLYGHLDKFLRVIFLNSPKKSFNNIINICFMIINYLILFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21267" PGL_stop="22183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21267" e_stop="21346"/>
            <exon e_start="21897" e_stop="22183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.321" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="21267" e_stop="21346" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.321">
            <gDNA_intron_boundary i_start="21347" i_stop="21896" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21897" e_stop="22183" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21267" stop="21346"/>
              <exon start="21897" stop="22183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAGAATTCAGCCAAAAACCTTTTTTTCTCGTATCCCTGTTATTTTGCGTAACCGTCTTACACCGATCTGCTTGCTAAG : AAGGGAAAAATGGCAGGTTCCCATATTGCACATGCTGCATACAAGGGTCCAAGTGTAGTGAAGGAGATTATGATAGGGATTGCTCTTGGAATGGTTGCCGGAGGTTTGTGGAAGAAGCACCATTGGAACAACCAGAGGAGAACTAAGGAATTCTATGATCTGCTTGAGAAAAATGAGATCAGTGTTGTGGTGAATGACCAGTAACTGAAAGTCTGGTCAGATACTATTCGAATTTTAATGTGTTGTTTTCTCACTTGGAATTATAATGAATAATGATAGTTCATTTG</gDNA_template>
            <first_frame> S  R  I  Q  P  K  T  F  F  S  R  I  P  V  I  L  R  N  R  L  T  P  I  C  L  L  R :   R  E  K  W  Q  V  P  I  L  H  M  L  H  T  R  V  Q  V  *  *  R  R  L  *  *  G  L  L  L  E  W  L  P  E  V  C  G  R  S  T  I  G  T  T  R  G  E  L  R  N  S  M  I  C  L  R  K  M  R  S  V  L  W  *  M  T  S  N  *  K  S  G  Q  I  L  F  E  F  *  C  V  V  F  S  L  G  I  I  M  N  N  D  S  S  F  </first_frame>
            <second_frame>  L  E  F  S  Q  K  P  F  F  L  V  S  L  L  F  C  V  T  V  L  H  R  S  A  C  *   : E  G  K  N  G  R  F  P  Y  C  T  C  C  I  Q  G  S  K  C  S  E  G  D  Y  D  R  D  C  S  W  N  G  C  R  R  F  V  E  E  A  P  L  E  Q  P  E  E  N  *  G  I  L  *  S  A  *  E  K  *  D  Q  C  C  G  E  *  P  V  T  E  S  L  V  R  Y  Y  S  N  F  N  V  L  F  S  H  L  E  L  *  *  I  M  I  V  H  L </second_frame>
            <third_frame>   *  N  S  A  K  N  L  F  F  S  Y  P  C  Y  F  A  *  P  S  Y  T  D  L  L  A  K  :  K  G  K  M  A  G  S  H  I  A  H  A  A  Y  K  G  P  S  V  V  K  E  I  M  I  G  I  A  L  G  M  V  A  G  G  L  W  K  K  H  H  W  N  N  Q  R  R  T  K  E  F  Y  D  L  L  E  K  N  E  I  S  V  V  V  N  D  Q  *  L  K  V  W  S  D  T  I  R  I  L  M  C  C  F  L  T  W  N  Y  N  E  *  *  *  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21320" stop="21346"/>
                    <exon start="21897" stop="22100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSYTDLLAKKGKMAGSHIAHAAYKGPSVVKEIMIGIALGMVAGGLWKKHHWNNQRRTKEFYDLLEKNEISVVVNDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22765" PGL_stop="22937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22765" e_stop="22937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="22765" e_stop="22937" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22765" stop="22937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCTATTGGTGTTCCAAGAGTTGTATTCCGAAATCCTGGAGATCCAATTTCATCTTGGGTTGAGATATAGTGCGACTTGTCAGAAATATTGGGTTATATGGTATTTCTCCGTTCTCTCCCCCGATCGAGATATCCCCCGTTTCGCCCAAGAAAGATAAATTGAATCATCAAA</gDNA_template>
            <first_frame> C  L  L  V  F  Q  E  L  Y  S  E  I  L  E  I  Q  F  H  L  G  L  R  Y  S  A  T  C  Q  K  Y  W  V  I  W  Y  F  S  V  L  S  P  D  R  D  I  P  R  F  A  Q  E  R  *  I  E  S  S   </first_frame>
            <second_frame>  A  Y  W  C  S  K  S  C  I  P  K  S  W  R  S  N  F  I  L  G  *  D  I  V  R  L  V  R  N  I  G  L  Y  G  I  S  P  F  S  P  P  I  E  I  S  P  V  S  P  K  K  D  K  L  N  H  Q  </second_frame>
            <third_frame>   P  I  G  V  P  R  V  V  F  R  N  P  G  D  P  I  S  S  W  V  E  I  *  C  D  L  S  E  I  L  G  Y  M  V  F  L  R  S  L  P  R  S  R  Y  P  P  F  R  P  R  K  I  N  *  I  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26095" PGL_stop="25669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26095" e_stop="25669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26095" e_stop="25669" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="25669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGTTTAGTCTCAAATGCACTCTATAAACTTGATGAATCATCATCTTATGCCACCACCACTGAGTCCTTAAGTATGCAAAGCTCATCAACTGGACCACACAAAAGTGATGAATTCCTTTTAAAAGAGTCTGAAAATACGAAATAATTGCAAGGACATAATATAGAAATGGAAGTTTTGGGAGATTTTTTATCAGTACATTTTTTGTACAGTAATAGAATTAGTATGATTTCATTTTTGAATTTTTGGTGAGTGATAATACAAGCAAGTGTAGACAGAAGCATAGATACTTTATCATTTTCAAATAGGTTCATGAATTGCTTAATGCTAATTCGTTTGTCCTGGCTTTTTGTCATTATGAAATGCTATCATATAATTAAATTATGTGGATATAGCCGGTTCATTTGGACCCCATTTTGAACTACC</gDNA_template>
            <first_frame> K  K  F  S  L  K  C  T  L  *  T  *  *  I  I  I  L  C  H  H  H  *  V  L  K  Y  A  K  L  I  N  W  T  T  Q  K  *  *  I  P  F  K  R  V  *  K  Y  E  I  I  A  R  T  *  Y  R  N  G  S  F  G  R  F  F  I  S  T  F  F  V  Q  *  *  N  *  Y  D  F  I  F  E  F  L  V  S  D  N  T  S  K  C  R  Q  K  H  R  Y  F  I  I  F  K  *  V  H  E  L  L  N  A  N  S  F  V  L  A  F  C  H  Y  E  M  L  S  Y  N  *  I  M  W  I  *  P  V  H  L  D  P  I  L  N  Y  </first_frame>
            <second_frame>  R  S  L  V  S  N  A  L  Y  K  L  D  E  S  S  S  Y  A  T  T  T  E  S  L  S  M  Q  S  S  S  T  G  P  H  K  S  D  E  F  L  L  K  E  S  E  N  T  K  *  L  Q  G  H  N  I  E  M  E  V  L  G  D  F  L  S  V  H  F  L  Y  S  N  R  I  S  M  I  S  F  L  N  F  W  *  V  I  I  Q  A  S  V  D  R  S  I  D  T  L  S  F  S  N  R  F  M  N  C  L  M  L  I  R  L  S  W  L  F  V  I  M  K  C  Y  H  I  I  K  L  C  G  Y  S  R  F  I  W  T  P  F  *  T  T </second_frame>
            <third_frame>   E  V  *  S  Q  M  H  S  I  N  L  M  N  H  H  L  M  P  P  P  L  S  P  *  V  C  K  A  H  Q  L  D  H  T  K  V  M  N  S  F  *  K  S  L  K  I  R  N  N  C  K  D  I  I  *  K  W  K  F  W  E  I  F  Y  Q  Y  I  F  C  T  V  I  E  L  V  *  F  H  F  *  I  F  G  E  *  *  Y  K  Q  V  *  T  E  A  *  I  L  Y  H  F  Q  I  G  S  *  I  A  *  C  *  F  V  C  P  G  F  L  S  L  *  N  A  I  I  *  L  N  Y  V  D  I  A  G  S  F  G  P  H  F  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27996" PGL_stop="26748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27996" e_stop="27646"/>
            <exon e_start="27526" e_stop="27176"/>
            <exon e_start="26938" e_stop="26748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="27996" e_stop="27646" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27645" i_stop="27527" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="27526" e_stop="27176" e_length="351"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27175" i_stop="26939" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="26938" e_stop="26748" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27996" stop="27646"/>
              <exon start="27526" stop="27176"/>
              <exon start="26938" stop="26748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTTTTGTGACCTACAATTTAAACTTTTCAAAGAAATGGTCCCAGGAAGATGACTTCGTTTCATAAATTGTATTTCTTATTTTGAGATTTTTTATATATAAAAGGAAAAATCTTCTATAAAAGAAACACGAAATTTAGATTAAATTTATGAAAGAATACAAAATCAATTGACTTTTGTGAGCCTGTTTTGACTTTATCTTCTGCATTTTGTACTGAAAAAAATGCTGTTATTTTCAGGAATAAGCAAAGGGGTGATAGTAGCTATAGTTCTTGGAGTGACAGCTTTCACCATGCTTGCTCTCTCAGCGGCTTACACAGCTCGTAAAAGATCATTAAGGCGAAAACGAG : CACGCATTAATCTTGGCAAAATATCGAATTCATACAAGAAGTCGAGCTTGAATTTTAAATATGAAAATCTTGAGAAGGCAACAAACTACTTTGATCCTTCAACAAAAGTAGGACAAGGAGGAAATGGTTCTGTATACAAAGGGACTCTGCCTAATGGGAATGTTATTGCAGTTAAGAGACTATTTTTCAATACAAGACAATGGGTTGATGACTTCTTCAATGAGGTCAATCTCATCCATGGAATTGAACACAAAAATCTTGTCAAGTTGTTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTGCTCGTATACGAGTTTGTGACCAATAAGAGTCTAGATCAATACCTCTTTG : ATAAAGACAAGGTAAAGATTCTAAGATGGGAAGAACGTTTCCGTATTATAGTTGGAACAGCACAAGGCATTGATTTCCTCCATGGAGGTTCAGAGATCAGAATCATCCATAGGGACATCAAGAGCTCCAATGTACTTCTTGATGAAAATCTTGAAGCAAAAATTGCTGATTTTGGACTTGCTCGGTGTTTC</gDNA_template>
            <first_frame> P  T  F  V  T  Y  N  L  N  F  S  K  K  W  S  Q  E  D  D  F  V  S  *  I  V  F  L  I  L  R  F  F  I  Y  K  R  K  N  L  L  *  K  K  H  E  I  *  I  K  F  M  K  E  Y  K  I  N  *  L  L  *  A  C  F  D  F  I  F  C  I  L  Y  *  K  K  C  C  Y  F  Q  E  *  A  K  G  *  *  *  L  *  F  L  E  *  Q  L  S  P  C  L  L  S  Q  R  L  T  Q  L  V  K  D  H  *  G  E  N  E  :  H  A  L  I  L  A  K  Y  R  I  H  T  R  S  R  A  *  I  L  N  M  K  I  L  R  R  Q  Q  T  T  L  I  L  Q  Q  K  *  D  K  E  E  M  V  L  Y  T  K  G  L  C  L  M  G  M  L  L  Q  L  R  D  Y  F  S  I  Q  D  N  G  L  M  T  S  S  M  R  S  I  S  S  M  E  L  N  T  K  I  L  S  S  C  W  V  A  A  L  K  A  P  R  A  C  S  Y  T  S  L  *  P  I  R  V  *  I  N  T  S  L  :  I  K  T  R  *  R  F  *  D  G  K  N  V  S  V  L  *  L  E  Q  H  K  A  L  I  S  S  M  E  V  Q  R  S  E  S  S  I  G  T  S  R  A  P  M  Y  F  L  M  K  I  L  K  Q  K  L  L  I  L  D  L  L  G  V   </first_frame>
            <second_frame>  Q  L  L  *  P  T  I  *  T  F  Q  R  N  G  P  R  K  M  T  S  F  H  K  L  Y  F  L  F  *  D  F  L  Y  I  K  G  K  I  F  Y  K  R  N  T  K  F  R  L  N  L  *  K  N  T  K  S  I  D  F  C  E  P  V  L  T  L  S  S  A  F  C  T  E  K  N  A  V  I  F  R  N  K  Q  R  G  D  S  S  Y  S  S  W  S  D  S  F  H  H  A  C  S  L  S  G  L  H  S  S  *  K  I  I  K  A  K  T  S :   T  H  *  S  W  Q  N  I  E  F  I  Q  E  V  E  L  E  F  *  I  *  K  S  *  E  G  N  K  L  L  *  S  F  N  K  S  R  T  R  R  K  W  F  C  I  Q  R  D  S  A  *  W  E  C  Y  C  S  *  E  T  I  F  Q  Y  K  T  M  G  *  *  L  L  Q  *  G  Q  S  H  P  W  N  *  T  Q  K  S  C  Q  V  V  G  L  Q  H  *  R  P  R  E  P  A  R  I  R  V  C  D  Q  *  E  S  R  S  I  P  L  * :   *  R  Q  G  K  D  S  K  M  G  R  T  F  P  Y  Y  S  W  N  S  T  R  H  *  F  P  P  W  R  F  R  D  Q  N  H  P  *  G  H  Q  E  L  Q  C  T  S  *  *  K  S  *  S  K  N  C  *  F  W  T  C  S  V  F  </second_frame>
            <third_frame>   N  F  C  D  L  Q  F  K  L  F  K  E  M  V  P  G  R  *  L  R  F  I  N  C  I  S  Y  F  E  I  F  Y  I  *  K  E  K  S  S  I  K  E  T  R  N  L  D  *  I  Y  E  R  I  Q  N  Q  L  T  F  V  S  L  F  *  L  Y  L  L  H  F  V  L  K  K  M  L  L  F  S  G  I  S  K  G  V  I  V  A  I  V  L  G  V  T  A  F  T  M  L  A  L  S  A  A  Y  T  A  R  K  R  S  L  R  R  K  R   : A  R  I  N  L  G  K  I  S  N  S  Y  K  K  S  S  L  N  F  K  Y  E  N  L  E  K  A  T  N  Y  F  D  P  S  T  K  V  G  Q  G  G  N  G  S  V  Y  K  G  T  L  P  N  G  N  V  I  A  V  K  R  L  F  F  N  T  R  Q  W  V  D  D  F  F  N  E  V  N  L  I  H  G  I  E  H  K  N  L  V  K  L  L  G  C  S  I  E  G  P  E  S  L  L  V  Y  E  F  V  T  N  K  S  L  D  Q  Y  L  F   : D  K  D  K  V  K  I  L  R  W  E  E  R  F  R  I  I  V  G  T  A  Q  G  I  D  F  L  H  G  G  S  E  I  R  I  I  H  R  D  I  K  S  S  N  V  L  L  D  E  N  L  E  A  K  I  A  D  F  G  L  A  R  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27802" stop="27646"/>
                    <exon start="27526" stop="27176"/>
                    <exon start="26938" stop="26748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLLHFVLKKMLLFSGISKGVIVAIVLGVTAFTMLALSAAYTARKRSLRRKRARINLGKISNSYKKSSLNFKYENLEKATNYFDPSTKVGQGGNGSVYKGTLPNGNVIAVKRLFFNTRQWVDDFFNEVNLIHGIEHKNLVKLLGCSIEGPESLLVYEFVTNKSLDQYLFDKDKVKILRWEERFRIIVGTAQGIDFLHGGSEIRIIHRDIKSSNVLLDENLEAKIADFGLARCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29430" PGL_stop="29091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29430" e_stop="29091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="29430" e_stop="29091" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29430" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTTTGTTCGTATGCAGTAGCAGCTTGCTCATGAAAATTGAGATGAATATATCCAGCTCAAATTTTCCACTTGTAAATTGGATGGTTATTTTGTTGCTGAATTTTGCTTTAATTTGTGAAGCCGATCCTCGAATTTCAGAATCTGGACTAATATGCGGCACGAACAGGACAACAGCGGCGATCATTATTCCCCAATTTGTTAAACTAATGGAAGTTGTTTCACAACGCGTGACGGATAACAATTGGGGAAACCACGGTGTAAATTCAACAAATATATCAATTTATGCATTAGCAAATTGTTATCAGGATCTACCACATCAGGACTGTCTTCTATGCT</gDNA_template>
            <first_frame> F  C  L  F  V  C  S  S  S  L  L  M  K  I  E  M  N  I  S  S  S  N  F  P  L  V  N  W  M  V  I  L  L  L  N  F  A  L  I  C  E  A  D  P  R  I  S  E  S  G  L  I  C  G  T  N  R  T  T  A  A  I  I  I  P  Q  F  V  K  L  M  E  V  V  S  Q  R  V  T  D  N  N  W  G  N  H  G  V  N  S  T  N  I  S  I  Y  A  L  A  N  C  Y  Q  D  L  P  H  Q  D  C  L  L  C  </first_frame>
            <second_frame>  F  V  C  S  Y  A  V  A  A  C  S  *  K  L  R  *  I  Y  P  A  Q  I  F  H  L  *  I  G  W  L  F  C  C  *  I  L  L  *  F  V  K  P  I  L  E  F  Q  N  L  D  *  Y  A  A  R  T  G  Q  Q  R  R  S  L  F  P  N  L  L  N  *  W  K  L  F  H  N  A  *  R  I  T  I  G  E  T  T  V  *  I  Q  Q  I  Y  Q  F  M  H  *  Q  I  V  I  R  I  Y  H  I  R  T  V  F  Y  A </second_frame>
            <third_frame>   L  F  V  R  M  Q  *  Q  L  A  H  E  N  *  D  E  Y  I  Q  L  K  F  S  T  C  K  L  D  G  Y  F  V  A  E  F  C  F  N  L  *  S  R  S  S  N  F  R  I  W  T  N  M  R  H  E  Q  D  N  S  G  D  H  Y  S  P  I  C  *  T  N  G  S  C  F  T  T  R  D  G  *  Q  L  G  K  P  R  C  K  F  N  K  Y  I  N  L  C  I  S  K  L  L  S  G  S  T  T  S  G  L  S  S  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29430" stop="29092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLFVCSSSLLMKIEMNISSSNFPLVNWMVILLLNFALICEADPRISESGLICGTNRTTAAIIIPQFVKLMEVVSQRVTDNNWGNHGVNSTNISIYALANCYQDLPHQDCLLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="41105" PGL_stop="38743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41105" e_stop="41069"/>
            <exon e_start="40196" e_stop="39977"/>
            <exon e_start="39884" e_stop="39801"/>
            <exon e_start="39259" e_stop="39180"/>
            <exon e_start="38855" e_stop="38743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.904" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41105" e_stop="41069" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.904" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41068" i_stop="40197" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40196" e_stop="39977" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="39976" i_stop="39885" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39884" e_stop="39801" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.473" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39800" i_stop="39260" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39259" e_stop="39180" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.983">
            <gDNA_intron_boundary i_start="39179" i_stop="38856" i_length="324"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38855" e_stop="38743" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41105" stop="41069"/>
              <exon start="40196" stop="39977"/>
              <exon start="39884" stop="39801"/>
              <exon start="39259" stop="39180"/>
              <exon start="38855" stop="38743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTG : GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG : TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG : GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG : GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</gDNA_template>
            <first_frame> *  N  Q  G  L  S  F  I  D  *  Y  S   : G  S  G  G  S  S  G  *  H  G  F  *  D  C  W  Y  P  *  W  C  N  G  H  T  I  R  Y  *  T  C  W  N  S  F  G  Y  H  M  *  E  S  R  S  C  T  *  R  E  A  S  N  P  R  A  H  G  A  *  D  K  C  S  T  Y  S  G  *  H  I  F  S  S  A  S :   Y  V  K  I  Q  Q  *  C  T  S  S  L  D  W  S  C  W  C  F  E  E  E  N  *  R  *  N  R :   C  T  D  L  G  *  *  W  N  T  Y  Y  N  C  Q  K  S  V  G  D  G  E  S  T  G  E   : G  *  F  Y  N  W  T  *  N  *  D  W  R  S  I  *  R  Y  C  C  I  C  *  R  I  W  R  L  C  G  V  *  W  W  T  T  G  P </first_frame>
            <second_frame>  E  I  K  D  Y  R  L  L  T  D  I  L  :  G  L  E  D  H  L  G  D  M  D  F  K  I  A  G  T  R  N  G  V  T  A  I  Q  L  D  I  K  P  A  G  I  P  L  D  I  I  C  E  S  L  D  P  A  L  K  G  R  L  Q  I  L  E  H  M  E  R  E  I  S  A  P  R  I  Q  D  N  I  Y  S  P  R  L   : V  T  S  K  Y  S  N  D  A  L  R  R  L  I  G  P  V  G  A  L  K  R  K  I  E  D  E  T   : G  A  R  I  S  V  S  D  G  T  L  T  I  I  A  K  N  Q  S  V  M  E  K  V  Q  E  K  :  V  D  F  I  I  G  R  E  I  E  I  G  G  V  Y  K  G  I  V  V  S  V  K  E  Y  G  A  F  V  E  F  N  G  G  Q  Q  G   </second_frame>
            <third_frame>   K  S  R  I  I  V  Y  *  L  I  F  W :   V  W  R  I  I  W  V  T  W  I  L  R  L  L  V  P  V  M  V  *  R  P  Y  N  *  I  L  N  L  L  E  F  L  W  I  S  Y  V  R  V  *  I  L  H  L  K  G  G  F  K  S  S  S  T  W  S  V  R  *  V  L  H  V  F  R  I  T  Y  I  L  L  G  *  :  L  R  Q  N  T  A  M  M  H  F  V  A  *  L  V  L  L  V  L  *  R  G  K  L  K  M  K  Q  :  V  H  G  S  R  L  V  M  E  H  L  L  *  L  P  K  I  S  R  *  W  R  K  Y  R  R  R :   L  I  L  *  L  D  V  K  L  R  L  E  E  Y  I  K  V  L  L  Y  L  L  K  N  M  A  P  L  W  S  L  M  V  D  N  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41104" stop="41069"/>
                    <exon start="40196" stop="39977"/>
                    <exon start="39884" stop="39801"/>
                    <exon start="39259" stop="39180"/>
                    <exon start="38855" stop="38745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKDYRLLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICESLDPALKGRLQILEHMEREISAPRIQDNIYSPRLVTSKYSNDALRRLIGPVGALKRKIEDETGARISVSDGTLTIIAKNQSVMEKVQEKVDFIIGREIEIGGVYKGIVVSVKEYGAFVEFNGGQQG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="44222" PGL_stop="41475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44222" e_stop="44209"/>
            <exon e_start="44121" e_stop="43951"/>
            <exon e_start="43517" e_stop="43392"/>
            <exon e_start="43311" e_stop="43266"/>
            <exon e_start="43166" e_stop="43150"/>
            <exon e_start="43014" e_stop="42895"/>
            <exon e_start="42492" e_stop="42355"/>
            <exon e_start="42238" e_stop="42076"/>
            <exon e_start="41532" e_stop="41475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.929"/>
          <exon-intron don_prob="0.963" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="44222" e_stop="44209" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44208" i_stop="44122" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44121" e_stop="43951" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.898">
            <gDNA_intron_boundary i_start="43950" i_stop="43518" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43517" e_stop="43392" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43391" i_stop="43312" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43311" e_stop="43266" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.477" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43265" i_stop="43167" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43166" e_stop="43150" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="43149" i_stop="43015" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43014" e_stop="42895" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42894" i_stop="42493" i_length="402"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42492" e_stop="42355" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="42354" i_stop="42239" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42238" e_stop="42076" e_length="163"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.983">
            <gDNA_intron_boundary i_start="42075" i_stop="41533" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41532" e_stop="41475" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44222" stop="44209"/>
              <exon start="44121" stop="43951"/>
              <exon start="43517" stop="43392"/>
              <exon start="43311" stop="43266"/>
              <exon start="43166" stop="43150"/>
              <exon start="43014" stop="42895"/>
              <exon start="42492" stop="42355"/>
              <exon start="42238" stop="42076"/>
              <exon start="41532" stop="41475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACGAGGTGCAG : GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG : CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG : GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG : ACCCTACTTATGGAAAG : TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG : GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG : GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG : GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</gDNA_template>
            <first_frame> T  T  R  C  R :   *  W  Q  V  C  F  H  L  T  G  N  K  I  Q  I  Y  W  Q  L  M  H  H  L  L  L  *  C  C  Q  I  F  L  G  V  G  Q  L  E  *  Y  V  L  E  G  F  Q  V  N  L  L  *  I  Q  A  W  R  S :   L  A  S  V  I  L  T  W  Y  M  H  V  R  G  I  K  L  *  *  *  M  S  K  L  V  K  Y  L  K  R  I  W  K  L  L  *  D  L  L  I  Q  R :   L  L  S  I  L  T  L  K  L  D  S  Q  L  K  L  :  T  L  L  M  E  S :   S  S  V  E  K  L  W  K  K  S  H  R  T  L  K  E  L  L  R  K  K  V  M  R  K  A  *  K  F  Y  Q  R  Q  L  I  Q  *  G  N  R :   L  F  A  E  G  S  F  L  K  G  L  E  W  T  E  G  V  L  M  K  L  G  L  C  T  V  K  L  V  I  Y  L  Y  Y  M  D  L  Q  F  F  Q  E  G  I  L  R :   S  F  A  L  L  P  L  E  H  L  G  M  L  N  V  W  I  P  W  S  V  L  Q  A  S  V  S  C  C  I  I  A  F  H  R  F  V  Q  M  K  L  A  N  E  L  A  *  I  G  V  K  L  V  M  :  A  L  L  L  K  R  L  C  L  L  Y  Y  P  R  K  M  I  F  H  </first_frame>
            <second_frame>  P  R  G  A   : G  N  G  K  C  A  F  I  *  R  E  T  R  S  R  Y  I  G  S  *  C  I  I  C  C  S  N  V  V  R  Y  S  L  G  W  A  N  W  S  N  T  Y  W  K  D  F  R  S  I  C  C  K  S  K  H  G  G   : A  *  H  Q  *  S  *  L  G  I  C  M  Y  E  G  *  N  F  D  D  R  C  P  S  S  *  N  I  *  K  G  F  G  S  C  F  E  T  C  S  S  R   : G  C  *  V  S  *  P  S  N  *  T  R  S  *  S  * :   P  Y  L  W  K   : V  R  A  W  R  S  F  G  K  N  H  T  G  R  *  K  S  S  *  G  R  R  *  *  G  R  P  K  N  S  T  K  D  S  *  Y  S  K  E  T   : G  C  S  Q  K  D  H  F  *  R  A  *  S  G  R  K  V  S  *  *  S  *  A  F  V  L  *  S  W  *  F  T  C  I  T  W  I  C  N  F  F  K  R  G  Y  S   : G  P  L  H  C  Y  P  W  S  T  W  G  C  S  T  S  G  F  P  G  R  S  F  K  Q  A  F  H  A  A  L  *  L  S  T  V  L  Y  K  *  S  W  Q  T  N  W  P  E  *  A  *  S  W  S  W :   H  S  C  *  K  G  S  A  C  C  I  T  P  G  R  *  F  S  I </second_frame>
            <third_frame>   H  E  V  Q  :  V  M  A  S  V  L  S  S  D  G  K  Q  D  P  D  I  L  A  A  N  A  S  S  A  A  L  M  L  S  D  I  P  W  G  G  P  I  G  V  I  R  I  G  R  I  S  G  Q  F  V  V  N  P  S  M  E  E  :  L  S  I  S  D  L  N  L  V  Y  A  C  T  R  D  K  T  L  M  I  D  V  Q  A  R  E  I  S  E  K  D  L  E  A  A  L  R  L  A  H  P  E  :  A  V  K  Y  L  D  P  Q  I  R  L  A  A  K  A   : D  P  T  Y  G  K  :  F  E  R  G  E  A  L  E  K  I  T  Q  D  V  K  R  A  L  E  E  E  G  D  E  E  G  L  K  I  L  P  K  T  V  D  T  V  R  K  Q  :  V  V  R  R  R  I  I  S  E  G  L  R  V  D  G  R  C  L  D  E  V  R  P  L  Y  C  E  A  G  N  L  P  V  L  H  G  S  A  I  F  S  R  G  D  T  Q  :  V  L  C  T  V  T  L  G  A  P  G  D  A  Q  R  L  D  S  L  V  G  P  S  S  K  R  F  M  L  H  Y  S  F  P  P  F  C  T  N  E  V  G  K  R  T  G  L  N  R  R  E  V  G  H   : G  T  L  A  E  K  A  L  L  A  V  L  P  P  E  D  D  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44220" stop="44209"/>
                    <exon start="44121" stop="43951"/>
                    <exon start="43517" stop="43392"/>
                    <exon start="43311" stop="43266"/>
                    <exon start="43166" stop="43150"/>
                    <exon start="43014" stop="42895"/>
                    <exon start="42492" stop="42355"/>
                    <exon start="42238" stop="42076"/>
                    <exon start="41532" stop="41477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEVQVMASVLSSDGKQDPDILAANASSAALMLSDIPWGGPIGVIRIGRISGQFVVNPSMEELSISDLNLVYACTRDKTLMIDVQAREISEKDLEAALRLAHPEAVKYLDPQIRLAAKADPTYGKFERGEALEKITQDVKRALEEEGDEEGLKILPKTVDTVRKQVVRRRIISEGLRVDGRCLDEVRPLYCEAGNLPVLHGSAIFSRGDTQVLCTVTLGAPGDAQRLDSLVGPSSKRFMLHYSFPPFCTNEVGKRTGLNRREVGHGTLAEKALLAVLPPEDDFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48971" PGL_stop="54309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48971" e_stop="49288"/>
            <exon e_start="49366" e_stop="49409"/>
            <exon e_start="49515" e_stop="49624"/>
            <exon e_start="49926" e_stop="49963"/>
            <exon e_start="50438" e_stop="50515"/>
            <exon e_start="51045" e_stop="51098"/>
            <exon e_start="51178" e_stop="51279"/>
            <exon e_start="51385" e_stop="51473"/>
            <exon e_start="51575" e_stop="51678"/>
            <exon e_start="51821" e_stop="51889"/>
            <exon e_start="51981" e_stop="52096"/>
            <exon e_start="52238" e_stop="52272"/>
            <exon e_start="52355" e_stop="52497"/>
            <exon e_start="53414" e_stop="53536"/>
            <exon e_start="53988" e_stop="54309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.108" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.400" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="48971" e_stop="49288" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49289" i_stop="49365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49366" e_stop="49409" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.768">
            <gDNA_intron_boundary i_start="49410" i_stop="49514" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49515" e_stop="49624" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49625" i_stop="49925" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49926" e_stop="49963" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.108" acc_prob="0.958">
            <gDNA_intron_boundary i_start="49964" i_stop="50437" i_length="474"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50438" e_stop="50515" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.717" acc_prob="0.922">
            <gDNA_intron_boundary i_start="50516" i_stop="51044" i_length="529"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51045" e_stop="51098" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.782">
            <gDNA_intron_boundary i_start="51099" i_stop="51177" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51178" e_stop="51279" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51280" i_stop="51384" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51385" e_stop="51473" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.935">
            <gDNA_intron_boundary i_start="51474" i_stop="51574" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51575" e_stop="51678" e_length="104"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51679" i_stop="51820" i_length="142"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51821" e_stop="51889" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.400" acc_prob="0.937">
            <gDNA_intron_boundary i_start="51890" i_stop="51980" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="51981" e_stop="52096" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52097" i_stop="52237" i_length="141"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="52238" e_stop="52272" e_length="35"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="52273" i_stop="52354" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="0.986">
            <gDNA_exon_boundary e_start="52355" e_stop="52497" e_length="143"/>
          </exon>
          <intron i_serial="13" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52498" i_stop="53413" i_length="916"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="53414" e_stop="53536" e_length="123"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53537" i_stop="53987" i_length="451"/>
          </intron>
          <exon e_serial="15" e_score="0.997">
            <gDNA_exon_boundary e_start="53988" e_stop="54309" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48971" stop="49288"/>
              <exon start="49366" stop="49409"/>
              <exon start="49515" stop="49624"/>
              <exon start="49926" stop="49963"/>
              <exon start="50438" stop="50515"/>
              <exon start="51045" stop="51098"/>
              <exon start="51178" stop="51279"/>
              <exon start="51385" stop="51473"/>
              <exon start="51575" stop="51678"/>
              <exon start="51821" stop="51889"/>
              <exon start="51981" stop="52096"/>
              <exon start="52238" stop="52272"/>
              <exon start="52355" stop="52497"/>
              <exon start="53414" stop="53536"/>
              <exon start="53988" stop="54309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGACAAACACAACCGAGTTTTCTCACAGCGGCATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG : GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG : CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGATTTAGGTATATTGAACCGTGATGCCACTGATGACCAAGTTACTGTTGAAAGTGCTGAGGCAACCCTGAA : ATACAATGTTGCTGTGAAATGCGCTACTATAACACCTG : ATGAGACCAGAGTCAAGGAATTTGGGCTGAAGTCTATGTGGAAAAGTCCCAATGGCACAATCAGAAACATTTTAAACG : GTACTGTTTTCCGGGAGCCTATACTATGCACGAACATTCCCAGGATTGTTCCTG : GTTGGAAGAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACAGATGCAATTATTAATGGGCCCGGAAAGCTCAAAATGGTTTTTG : TGCCGGAAAATGGGGAATCCCCTACGGAGCTGGATGTTTATGATTTTAAAGGTCCGGGTATTGCACTTGCCATGTACAATGTCGACCAG : TCAATTCGAGCATTTGCTGAATCATCAATGTCAATGGCATTTTCAAAGAAATGGCCTCTTTACTTGAGTACAAAAAACACAATTTTAAAGAAATACGATGGAAG : GTTTAAGGACATTTTTCAAGAGGTATACGAAGAGAAGTGGAAGCAACAGTTTGAGGAACACTCAATATG : GTATGAGCATAGACTGATAGATGACATGGTCGCTTATGTGTTAAAAAGCGAGGGTGGATATGTTTGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATCTGCTCGCTCAAG : GATTTGGTTCTCTGGGCCTCATGACTTCTGTATTG : TTATCTTCTGATGGCAAGACATTAGAAGCTGAAGCAGCTCACGGCACTGTAACAAGACATTTTCGGCTGCATCAAAAGGGTCAAGAAACTAGTACAAACAGTGTTGCTTCCATTTTTGCATGGACAAGGGGACTTGGACATAG : GGCTCAGCTTGATGGGAATCAAAAGTTGTTGGAATTTGTTCACACCCTTGAAGCTTCTTGCATTGGGACAATAGAGTCCGGGAAGATGACTAAGGACTTAGCTATATTAGCTCACGGACCCAA : GGTGTCAAGAGAATTCTACTTGAACACTGAAGAATTTATTGATGCTGTAGCACAGAAACTTCAAGAGAAGCTTCATGCCTCGGCGCCTATTTAAGTTGTACTGGATTATGTAGTGAGAACATACATGTATGAGCTGAAGAAGATCATGAGCAGCATCCTTTCACTGTTAACATAACTCTACTCACACTGCCCGTTGAGACATTCTTTACTCTAGTTTTTGTAGTTGTTCAGGTACAAGATAACAGGTTGTTGAGTGGTCCCTTCATACTGATCTTCAATGGGTTGTGTATATTATTGTCTCGTTTTATTTAGGATCCTTCAT</gDNA_template>
            <first_frame> R  T  N  T  T  E  F  S  H  S  G  I  D  N  F  L  K  P  T  K  V  L  C  S  P  S  D  P  D  S  G  V  P  P  W  P  A  S  L  L  L  S  H  L  H  R  L  Q  H  H  L  *  L  V  K  N  S  I  F  K  S  I  P  I  G  S  S  S  I  T  E  Y  L  S  L  R  E  S  L  M  P  P  F  G  A  S  L  P  P  L  V  R  L  A  K  S  S  F  K  I  P  *  S  K  W  T  :  V  M  K  *  R  G  L  Y  G  K  *  S  K  T  S :   *  S  I  L  I  *  S  W  I  Q  S  I  M  I  *  V  Y  *  T  V  M  P  L  M  T  K  L  L  L  K  V  L  R  Q  P  *   : N  T  M  L  L  *  N  A  L  L  *  H  L  :  M  R  P  E  S  R  N  L  G  *  S  L  C  G  K  V  P  M  A  Q  S  E  T  F  *  T  :  V  L  F  S  G  S  L  Y  Y  A  R  T  F  P  G  L  F  L  :  V  G  R  N  P  F  V  L  V  G  M  L  L  V  I  S  I  V  P  Q  M  Q  L  L  M  G  P  E  S  S  K  W  F  L  :  C  R  K  M  G  N  P  L  R  S  W  M  F  M  I  L  K  V  R  V  L  H  L  P  C  T  M  S  T  S :   Q  F  E  H  L  L  N  H  Q  C  Q  W  H  F  Q  R  N  G  L  F  T  *  V  Q  K  T  Q  F  *  R  N  T  M  E   : G  L  R  T  F  F  K  R  Y  T  K  R  S  G  S  N  S  L  R  N  T  Q  Y   : G  M  S  I  D  *  *  M  T  W  S  L  M  C  *  K  A  R  V  D  M  F  G  H  A  R  T  M  M  E  M  S  R  V  I  C  S  L  K  :  D  L  V  L  W  A  S  *  L  L  Y  C :   Y  L  L  M  A  R  H  *  K  L  K  Q  L  T  A  L  *  Q  D  I  F  G  C  I  K  R  V  K  K  L  V  Q  T  V  L  L  P  F  L  H  G  Q  G  D  L  D  I   : G  L  S  L  M  G  I  K  S  C  W  N  L  F  T  P  L  K  L  L  A  L  G  Q  *  S  P  G  R  *  L  R  T  *  L  Y  *  L  T  D  P   : R  C  Q  E  N  S  T  *  T  L  K  N  L  L  M  L  *  H  R  N  F  K  R  S  F  M  P  R  R  L  F  K  L  Y  W  I  M  *  *  E  H  T  C  M  S  *  R  R  S  *  A  A  S  F  H  C  *  H  N  S  T  H  T  A  R  *  D  I  L  Y  S  S  F  C  S  C  S  G  T  R  *  Q  V  V  E  W  S  L  H  T  D  L  Q  W  V  V  Y  I  I  V  S  F  Y  L  G  S  F   </first_frame>
            <second_frame>  G  Q  T  Q  P  S  F  L  T  A  A  L  T  T  S  *  S  Q  L  K  C  Y  A  R  R  P  T  Q  T  P  V  F  L  H  G  R  R  R  F  F  C  L  I  F  I  G  F  S  I  I  Y  S  *  *  K  I  L  F  S  S  Q  F  Q  S  A  A  L  Q  *  Q  S  I  S  H  Y  A  N  P  *  C  L  H  S  V  L  R  F  H  L  W  S  D  *  Q  N  P  R  S  K  S  H  S  R  N  G  R :   *  *  N  D  E  G  Y  M  E  N  D  Q  R  Q   : A  N  L  S  L  S  R  V  G  Y  K  V  L  *  F  R  Y  I  E  P  *  C  H  *  *  P  S  Y  C  *  K  C  *  G  N  P  E  :  I  Q  C  C  C  E  M  R  Y  Y  N  T  * :   *  D  Q  S  Q  G  I  W  A  E  V  Y  V  E  K  S  Q  W  H  N  Q  K  H  F  K  R :   Y  C  F  P  G  A  Y  T  M  H  E  H  S  Q  D  C  S  W :   L  E  E  T  H  L  Y  W  *  A  C  F  W  *  S  V  S  C  H  R  C  N  Y  *  W  A  R  K  A  Q  N  G  F  C :   A  G  K  W  G  I  P  Y  G  A  G  C  L  *  F  *  R  S  G  Y  C  T  C  H  V  Q  C  R  P   : V  N  S  S  I  C  *  I  I  N  V  N  G  I  F  K  E  M  A  S  L  L  E  Y  K  K  H  N  F  K  E  I  R  W  K  :  V  *  G  H  F  S  R  G  I  R  R  E  V  E  A  T  V  *  G  T  L  N  M  :  V  *  A  *  T  D  R  *  H  G  R  L  C  V  K  K  R  G  W  I  C  L  G  M  Q  E  L  *  W  R  C  P  E  *  S  A  R  S  R :   I  W  F  S  G  P  H  D  F  C  I   : V  I  F  *  W  Q  D  I  R  S  *  S  S  S  R  H  C  N  K  T  F  S  A  A  S  K  G  S  R  N  *  Y  K  Q  C  C  F  H  F  C  M  D  K  G  T  W  T  *  :  G  S  A  *  W  E  S  K  V  V  G  I  C  S  H  P  *  S  F  L  H  W  D  N  R  V  R  E  D  D  *  G  L  S  Y  I  S  S  R  T  Q  :  G  V  K  R  I  L  L  E  H  *  R  I  Y  *  C  C  S  T  E  T  S  R  E  A  S  C  L  G  A  Y  L  S  C  T  G  L  C  S  E  N  I  H  V  *  A  E  E  D  H  E  Q  H  P  F  T  V  N  I  T  L  L  T  L  P  V  E  T  F  F  T  L  V  F  V  V  V  Q  V  Q  D  N  R  L  L  S  G  P  F  I  L  I  F  N  G  L  C  I  L  L  S  R  F  I  *  D  P  S  </second_frame>
            <third_frame>   D  K  H  N  R  V  F  S  Q  R  H  *  Q  L  L  K  A  N  *  S  V  M  L  A  V  R  P  R  L  R  C  S  S  M  A  G  V  A  S  F  V  S  S  S  S  A  S  A  S  S  I  A  S  K  K  F  Y  F  Q  V  N  S  N  R  Q  L  F  N  N  R  V  S  L  T  T  R  I  P  N  A  S  I  R  C  F  A  S  T  S  G  P  T  S  K  I  L  V  Q  N  P  I  V  E  M  D   : G  D  E  M  T  R  V  I  W  K  M  I  K  D  K  :  L  I  Y  P  Y  L  E  L  D  T  K  Y  Y  D  L  G  I  L  N  R  D  A  T  D  D  Q  V  T  V  E  S  A  E  A  T  L  K :   Y  N  V  A  V  K  C  A  T  I  T  P   : D  E  T  R  V  K  E  F  G  L  K  S  M  W  K  S  P  N  G  T  I  R  N  I  L  N   : G  T  V  F  R  E  P  I  L  C  T  N  I  P  R  I  V  P   : G  W  K  K  P  I  C  I  G  R  H  A  F  G  D  Q  Y  R  A  T  D  A  I  I  N  G  P  G  K  L  K  M  V  F   : V  P  E  N  G  E  S  P  T  E  L  D  V  Y  D  F  K  G  P  G  I  A  L  A  M  Y  N  V  D  Q  :  S  I  R  A  F  A  E  S  S  M  S  M  A  F  S  K  K  W  P  L  Y  L  S  T  K  N  T  I  L  K  K  Y  D  G  R :   F  K  D  I  F  Q  E  V  Y  E  E  K  W  K  Q  Q  F  E  E  H  S  I  W :   Y  E  H  R  L  I  D  D  M  V  A  Y  V  L  K  S  E  G  G  Y  V  W  A  C  K  N  Y  D  G  D  V  Q  S  D  L  L  A  Q   : G  F  G  S  L  G  L  M  T  S  V  L  :  L  S  S  D  G  K  T  L  E  A  E  A  A  H  G  T  V  T  R  H  F  R  L  H  Q  K  G  Q  E  T  S  T  N  S  V  A  S  I  F  A  W  T  R  G  L  G  H  R :   A  Q  L  D  G  N  Q  K  L  L  E  F  V  H  T  L  E  A  S  C  I  G  T  I  E  S  G  K  M  T  K  D  L  A  I  L  A  H  G  P  K :   V  S  R  E  F  Y  L  N  T  E  E  F  I  D  A  V  A  Q  K  L  Q  E  K  L  H  A  S  A  P  I  *  V  V  L  D  Y  V  V  R  T  Y  M  Y  E  L  K  K  I  M  S  S  I  L  S  L  L  T  *  L  Y  S  H  C  P  L  R  H  S  L  L  *  F  L  *  L  F  R  Y  K  I  T  G  C  *  V  V  P  S  Y  *  S  S  M  G  C  V  Y  Y  C  L  V  L  F  R  I  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49030" stop="49288"/>
                    <exon start="49366" stop="49409"/>
                    <exon start="49515" stop="49624"/>
                    <exon start="49926" stop="49963"/>
                    <exon start="50438" stop="50515"/>
                    <exon start="51045" stop="51098"/>
                    <exon start="51178" stop="51279"/>
                    <exon start="51385" stop="51473"/>
                    <exon start="51575" stop="51678"/>
                    <exon start="51821" stop="51889"/>
                    <exon start="51981" stop="52096"/>
                    <exon start="52238" stop="52272"/>
                    <exon start="52355" stop="52497"/>
                    <exon start="53414" stop="53536"/>
                    <exon start="53988" stop="54081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMLAVRPRLRCSSMAGVASFVSSSSASASSIASKKFYFQVNSNRQLFNNRVSLTTRIPNASIRCFASTSGPTSKILVQNPIVEMDGDEMTRVIWKMIKDKLIYPYLELDTKYYDLGILNRDATDDQVTVESAEATLKYNVAVKCATITPDETRVKEFGLKSMWKSPNGTIRNILNGTVFREPILCTNIPRIVPGWKKPICIGRHAFGDQYRATDAIINGPGKLKMVFVPENGESPTELDVYDFKGPGIALAMYNVDQSIRAFAESSMSMAFSKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQQFEEHSIWYEHRLIDDMVAYVLKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSVASIFAWTRGLGHRAQLDGNQKLLEFVHTLEASCIGTIESGKMTKDLAILAHGPKVSREFYLNTEEFIDAVAQKLQEKLHASAPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75366" PGL_stop="79240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75366" e_stop="75510"/>
            <exon e_start="77159" e_stop="77634"/>
            <exon e_start="78511" e_stop="78755"/>
            <exon e_start="78851" e_stop="79240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.992" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.473" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="75366" e_stop="75510" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75511" i_stop="77158" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77159" e_stop="77634" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77635" i_stop="78510" i_length="876"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78511" e_stop="78755" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.473">
            <gDNA_intron_boundary i_start="78756" i_stop="78850" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78851" e_stop="79240" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75366" stop="75510"/>
              <exon start="77159" stop="77634"/>
              <exon start="78511" stop="78755"/>
              <exon start="78851" stop="79240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAACAATACATTACGTATACCCCAGACCCCGCCTCGTCTTCTTCCTCGAACTCACCAGTGCGAAACCCAGCAAGCCCAGACCCCGCTCTACTCGCTCTTCGTACAGTATTCCGGCCTTCATCGTGGGTGGCATCGGGCATCT : ATAATTAAGATTCAACCATTCTACATGATTCTTCCAATTGACCCAGCAAATAAATTATCGTTTAAGCGTTTTATTAAAGATGGAGATTTGGTCATTGTGTACGAGAGGCACGACACAATGAAAGCAGTGAAAGTCAGTGAGGATGGGGTTCTGCAGAATCGTTTTGGTGCTTTTAAGCATTCTGAATGGATAGGTAAACCTTTTGGGTCCAAGGTTTTGAGTAACAAAGGTGCTTTTGTTTACTTGTTAGCTCCAACTCCTGAGCTATGGACGCTAGTACTGAGTCACAGAACCCAGATTCTTTATATAGCTGATATTAGTTTTGTTGTTATGTACCTGGAGATCGTTCCTGGTTGTGTGGTTCTTGAATCTGGTACTGGAAGTGGATCTTTGACGACTTCGCTTGCAAGGGCTGTTGCCCCCACTGGCCATGTTTATACCTTCGATTTCCATGAACAGAGAGCTGCCTCAGCTAG : GGAGGACTTTGAAAAAACAGGGTTGAGCAGTCTGGTCACAGTAGGAGTAAGAGATATACAGGGCGAGGGATTCCCTGATGAGTTTTGTGGGAGAGCAGATTCAGTATTCTTAGACCTTCCTCAACCTTGGCTTGTCATTCCTTCTGCTGGCAAAATGTTGAAACCAGATGGGGTATTGTGCTCCTTCTCTCCATGCATTGAGCAAGTACAGCGCTCATGTGAAGCACTCAAATCACAGTTTACAG : ATATAAGAACATTTGAAGTACTTCTTCGCACCTATGAAGTTAGACAAAAGATACTAGAGAGCTGCCCAGTAAATGAAGGAGATTCTATTGAGCGTCCTCCACGGAAGAGGAGGCAGGGTTCTGCTGAAGGAAGCAATGGGACTGAATGCTCCTCTTCTCCTGCGGTGGTGATTAGGCCTTCTGGTGAGGCAAGAGGTCATACAGGCTATTTGACATTTGCCAGACTCAAATGTTTTGTGTAATGTGTTTTGATGAATATCCAGTTCTTGTGGTCGAGTACACTGTTCGTTCTTTAGATGTTGTGCTTATTTTTCTTCTTGATTCTACAATTAGATATCAGACAATTTTGTCTTGAGATTTAACAAAAAGGAAAAGAATCGCTTCTATTCG</gDNA_template>
            <first_frame> E  Q  Q  Y  I  T  Y  T  P  D  P  A  S  S  S  S  S  N  S  P  V  R  N  P  A  S  P  D  P  A  L  L  A  L  R  T  V  F  R  P  S  S  W  V  A  S  G  I   : Y  N  *  D  S  T  I  L  H  D  S  S  N  *  P  S  K  *  I  I  V  *  A  F  Y  *  R  W  R  F  G  H  C  V  R  E  A  R  H  N  E  S  S  E  S  Q  *  G  W  G  S  A  E  S  F  W  C  F  *  A  F  *  M  D  R  *  T  F  W  V  Q  G  F  E  *  Q  R  C  F  C  L  L  V  S  S  N  S  *  A  M  D  A  S  T  E  S  Q  N  P  D  S  L  Y  S  *  Y  *  F  C  C  Y  V  P  G  D  R  S  W  L  C  G  S  *  I  W  Y  W  K  W  I  F  D  D  F  A  C  K  G  C  C  P  H  W  P  C  L  Y  L  R  F  P  *  T  E  S  C  L  S  *  :  G  G  L  *  K  N  R  V  E  Q  S  G  H  S  R  S  K  R  Y  T  G  R  G  I  P  *  *  V  L  W  E  S  R  F  S  I  L  R  P  S  S  T  L  A  C  H  S  F  C  W  Q  N  V  E  T  R  W  G  I  V  L  L  L  S  M  H  *  A  S  T  A  L  M  *  S  T  Q  I  T  V  Y  R :   Y  K  N  I  *  S  T  S  S  H  L  *  S  *  T  K  D  T  R  E  L  P  S  K  *  R  R  F  Y  *  A  S  S  T  E  E  E  A  G  F  C  *  R  K  Q  W  D  *  M  L  L  F  S  C  G  G  D  *  A  F  W  *  G  K  R  S  Y  R  L  F  D  I  C  Q  T  Q  M  F  C  V  M  C  F  D  E  Y  P  V  L  V  V  E  Y  T  V  R  S  L  D  V  V  L  I  F  L  L  D  S  T  I  R  Y  Q  T  I  L  S  *  D  L  T  K  R  K  R  I  A  S  I   </first_frame>
            <second_frame>  N  N  N  T  L  R  I  P  Q  T  P  P  R  L  L  P  R  T  H  Q  C  E  T  Q  Q  A  Q  T  P  L  Y  S  L  F  V  Q  Y  S  G  L  H  R  G  W  H  R  A  S  :  I  I  K  I  Q  P  F  Y  M  I  L  P  I  D  P  A  N  K  L  S  F  K  R  F  I  K  D  G  D  L  V  I  V  Y  E  R  H  D  T  M  K  A  V  K  V  S  E  D  G  V  L  Q  N  R  F  G  A  F  K  H  S  E  W  I  G  K  P  F  G  S  K  V  L  S  N  K  G  A  F  V  Y  L  L  A  P  T  P  E  L  W  T  L  V  L  S  H  R  T  Q  I  L  Y  I  A  D  I  S  F  V  V  M  Y  L  E  I  V  P  G  C  V  V  L  E  S  G  T  G  S  G  S  L  T  T  S  L  A  R  A  V  A  P  T  G  H  V  Y  T  F  D  F  H  E  Q  R  A  A  S  A  R :   E  D  F  E  K  T  G  L  S  S  L  V  T  V  G  V  R  D  I  Q  G  E  G  F  P  D  E  F  C  G  R  A  D  S  V  F  L  D  L  P  Q  P  W  L  V  I  P  S  A  G  K  M  L  K  P  D  G  V  L  C  S  F  S  P  C  I  E  Q  V  Q  R  S  C  E  A  L  K  S  Q  F  T   : D  I  R  T  F  E  V  L  L  R  T  Y  E  V  R  Q  K  I  L  E  S  C  P  V  N  E  G  D  S  I  E  R  P  P  R  K  R  R  Q  G  S  A  E  G  S  N  G  T  E  C  S  S  S  P  A  V  V  I  R  P  S  G  E  A  R  G  H  T  G  Y  L  T  F  A  R  L  K  C  F  V  *  C  V  L  M  N  I  Q  F  L  W  S  S  T  L  F  V  L  *  M  L  C  L  F  F  F  L  I  L  Q  L  D  I  R  Q  F  C  L  E  I  *  Q  K  G  K  E  S  L  L  F  </second_frame>
            <third_frame>   T  T  I  H  Y  V  Y  P  R  P  R  L  V  F  F  L  E  L  T  S  A  K  P  S  K  P  R  P  R  S  T  R  S  S  Y  S  I  P  A  F  I  V  G  G  I  G  H  L :   *  L  R  F  N  H  S  T  *  F  F  Q  L  T  Q  Q  I  N  Y  R  L  S  V  L  L  K  M  E  I  W  S  L  C  T  R  G  T  T  Q  *  K  Q  *  K  S  V  R  M  G  F  C  R  I  V  L  V  L  L  S  I  L  N  G  *  V  N  L  L  G  P  R  F  *  V  T  K  V  L  L  F  T  C  *  L  Q  L  L  S  Y  G  R  *  Y  *  V  T  E  P  R  F  F  I  *  L  I  L  V  L  L  L  C  T  W  R  S  F  L  V  V  W  F  L  N  L  V  L  E  V  D  L  *  R  L  R  L  Q  G  L  L  P  P  L  A  M  F  I  P  S  I  S  M  N  R  E  L  P  Q  L   : G  R  T  L  K  K  Q  G  *  A  V  W  S  Q  *  E  *  E  I  Y  R  A  R  D  S  L  M  S  F  V  G  E  Q  I  Q  Y  S  *  T  F  L  N  L  G  L  S  F  L  L  L  A  K  C  *  N  Q  M  G  Y  C  A  P  S  L  H  A  L  S  K  Y  S  A  H  V  K  H  S  N  H  S  L  Q  :  I  *  E  H  L  K  Y  F  F  A  P  M  K  L  D  K  R  Y  *  R  A  A  Q  *  M  K  E  I  L  L  S  V  L  H  G  R  G  G  R  V  L  L  K  E  A  M  G  L  N  A  P  L  L  L  R  W  *  L  G  L  L  V  R  Q  E  V  I  Q  A  I  *  H  L  P  D  S  N  V  L  C  N  V  F  *  *  I  S  S  S  C  G  R  V  H  C  S  F  F  R  C  C  A  Y  F  S  S  *  F  Y  N  *  I  S  D  N  F  V  L  R  F  N  K  K  E  K  N  R  F  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75367" stop="75510"/>
                    <exon start="77159" stop="77634"/>
                    <exon start="78511" stop="78755"/>
                    <exon start="78851" stop="79092"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNTLRIPQTPPRLLPRTHQCETQQAQTPLYSLFVQYSGLHRGWHRASIIKIQPFYMILPIDPANKLSFKRFIKDGDLVIVYERHDTMKAVKVSEDGVLQNRFGAFKHSEWIGKPFGSKVLSNKGAFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGLSSLVTVGVRDIQGEGFPDEFCGRADSVFLDLPQPWLVIPSAGKMLKPDGVLCSFSPCIEQVQRSCEALKSQFTDIRTFEVLLRTYEVRQKILESCPVNEGDSIERPPRKRRQGSAEGSNGTECSSSPAVVIRPSGEARGHTGYLTFARLKCFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="82953" PGL_stop="87555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82953" e_stop="83567"/>
            <exon e_start="84238" e_stop="84390"/>
            <exon e_start="84631" e_stop="84716"/>
            <exon e_start="85007" e_stop="85091"/>
            <exon e_start="85349" e_stop="85471"/>
            <exon e_start="85564" e_stop="85641"/>
            <exon e_start="85979" e_stop="86108"/>
            <exon e_start="86246" e_stop="86613"/>
            <exon e_start="87467" e_stop="87555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.990" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.506"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82953" e_stop="83567" e_length="615"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.990">
            <gDNA_intron_boundary i_start="83568" i_stop="84237" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84238" e_stop="84390" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="84391" i_stop="84630" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84631" e_stop="84716" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84717" i_stop="85006" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85007" e_stop="85091" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85092" i_stop="85348" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85349" e_stop="85471" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85472" i_stop="85563" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85564" e_stop="85641" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="85642" i_stop="85978" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85979" e_stop="86108" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86109" i_stop="86245" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="86246" e_stop="86613" e_length="368"/>
          </exon>
          <intron i_serial="8" don_prob="0.674" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86614" i_stop="87466" i_length="853"/>
          </intron>
          <exon e_serial="9" e_score="0.506">
            <gDNA_exon_boundary e_start="87467" e_stop="87555" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82953" stop="83567"/>
              <exon start="84238" stop="84390"/>
              <exon start="84631" stop="84716"/>
              <exon start="85007" stop="85091"/>
              <exon start="85349" stop="85471"/>
              <exon start="85564" stop="85641"/>
              <exon start="85979" stop="86108"/>
              <exon start="86246" stop="86613"/>
              <exon start="87467" stop="87555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTGTTTCTCCTCCCTGCTAAAGTTGTGCAATATTCATTTTTTATCTGTTGCCAACATATAGATGTATAATTGAAATTTCAATGGAAGAATGTCAACCATCAATGTCGATATAAGCTGATACGAAATAGATTTAGCTCTCAACCATAAACCATGGGAACCTCTACATTTTACATGTCTCTTCCCACACCATTTCTAAAGCCTCAAAAACCTTCCAATAAAATCTTCATTACCAGTAGTAATAAGTTCAACTCAGCTCTTCAGCATTATGCTTTGCACAAGCCAAAAAGTTGTTCGATTCGAAAAACTAGTGTTGCTATTCTGGCGAAAAGTTCATGTAGACTGGATCTGTTCAAAGTGAGGGCTGTAGCAGAAAATGCAGGTGAATCTGAGGTTGTGAAACCCAAGGAAGTGATACAGACGCTTCAACTGGGCGCGATGTTTGGAATTTGGTACCTTTTGAATATTTGTTATAATATTTACAACAAACAGGTACTCAAGGTTTTTCCATTTCCGGCGACTGTTACGGCCTCACAATTTGGCTGTGGGACTTTGTTAATACTCTTTATGTGGGGATTTCGTCTTCATCCGATACCAAAAATCAGTAAATCTCAA : TTTAAAGCAATATTCGCACTAGCTGCAATTCACACATTGGGTAATGTTCTAACGAACATCAGTCTTGGGAGAGTAGCCGTTTCGTTTACTCACACAATCAAAGCAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAG : CGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTG : GATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAG : GAGGCATTGGACAATATCAATTTGTTCTCTATGATCACAATCATTTCATTCATCCTTTTGGTACCTGCTGCCATTTTGATGGAAGGGATCAAGCTTACTCCATCCTATCTACAATATACTGCT : GCAAGTCAAGGTTTACATGTCAGAGAGCTTTGTGTGAGACTTCTTTTAGCTGGATTCTGCTTGCACAGTTACCAACAG : GTTTCATACATGATACTACAGATGGTATCACCAGTGACACATGCAGTTGGTAATTGTCTGAAGAGAGTGGTAGTCATTGTATCCTCAGTCATCTTCTTCCAAACACCCGTTTCACCAATTAACTCCCTTG : GGACTGCTATGGCTCTAGCTGGAGTCTTTCTTTATTCAAGAGTAAAGAGATTACGGGGGAAGCCAAAAGATGCGTGACAAGTGAAGAAAGTTGTCAAATCCTGTAGTCATAATGCCCTGTAAAGAAAAGGTTAACCAAAAACAGGAACTCGTGGATTGGGTTCGAGTTATAGGAAGATTAGGTCAGGAACTAGCAAGTAGTTTGAGAATCCCTGTCAATAATGGAAGGATGGCAAAAGATGGAAGAAGATATTTAAAGCAATCGTTATTGCATTTCAAGATGTGTAATTTATACATTAGTGCAATACCAAAATCAACTACTAAGGCCTATGACTGAAACTGAATTATTCTGATCTGGCGGAAAATCAT : ATGGAAACTAGCTGGAGCATCAGAGCCATGACCATGTCTATCTCTAAACAAATCACAACCAATTAGTCAGAACATGGAAAAAAAAAGGA</gDNA_template>
            <first_frame> W  L  F  L  L  P  A  K  V  V  Q  Y  S  F  F  I  C  C  Q  H  I  D  V  *  L  K  F  Q  W  K  N  V  N  H  Q  C  R  Y  K  L  I  R  N  R  F  S  S  Q  P  *  T  M  G  T  S  T  F  Y  M  S  L  P  T  P  F  L  K  P  Q  K  P  S  N  K  I  F  I  T  S  S  N  K  F  N  S  A  L  Q  H  Y  A  L  H  K  P  K  S  C  S  I  R  K  T  S  V  A  I  L  A  K  S  S  C  R  L  D  L  F  K  V  R  A  V  A  E  N  A  G  E  S  E  V  V  K  P  K  E  V  I  Q  T  L  Q  L  G  A  M  F  G  I  W  Y  L  L  N  I  C  Y  N  I  Y  N  K  Q  V  L  K  V  F  P  F  P  A  T  V  T  A  S  Q  F  G  C  G  T  L  L  I  L  F  M  W  G  F  R  L  H  P  I  P  K  I  S  K  S  Q  :  F  K  A  I  F  A  L  A  A  I  H  T  L  G  N  V  L  T  N  I  S  L  G  R  V  A  V  S  F  T  H  T  I  K  A  M  E  P  F  F  T  V  L  L  S  A  L  F  L  A  E  :  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W :   I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  :  E  A  L  D  N  I  N  L  F  S  M  I  T  I  I  S  F  I  L  L  V  P  A  A  I  L  M  E  G  I  K  L  T  P  S  Y  L  Q  Y  T  A  :  A  S  Q  G  L  H  V  R  E  L  C  V  R  L  L  L  A  G  F  C  L  H  S  Y  Q  Q  :  V  S  Y  M  I  L  Q  M  V  S  P  V  T  H  A  V  G  N  C  L  K  R  V  V  V  I  V  S  S  V  I  F  F  Q  T  P  V  S  P  I  N  S  L   : G  T  A  M  A  L  A  G  V  F  L  Y  S  R  V  K  R  L  R  G  K  P  K  D  A  *  Q  V  K  K  V  V  K  S  C  S  H  N  A  L  *  R  K  G  *  P  K  T  G  T  R  G  L  G  S  S  Y  R  K  I  R  S  G  T  S  K  *  F  E  N  P  C  Q  *  W  K  D  G  K  R  W  K  K  I  F  K  A  I  V  I  A  F  Q  D  V  *  F  I  H  *  C  N  T  K  I  N  Y  *  G  L  *  L  K  L  N  Y  S  D  L  A  E  N  H  :  M  E  T  S  W  S  I  R  A  M  T  M  S  I  S  K  Q  I  T  T  N  *  S  E  H  G  K  K  K   </first_frame>
            <second_frame>  G  C  F  S  S  L  L  K  L  C  N  I  H  F  L  S  V  A  N  I  *  M  Y  N  *  N  F  N  G  R  M  S  T  I  N  V  D  I  S  *  Y  E  I  D  L  A  L  N  H  K  P  W  E  P  L  H  F  T  C  L  F  P  H  H  F  *  S  L  K  N  L  P  I  K  S  S  L  P  V  V  I  S  S  T  Q  L  F  S  I  M  L  C  T  S  Q  K  V  V  R  F  E  K  L  V  L  L  F  W  R  K  V  H  V  D  W  I  C  S  K  *  G  L  *  Q  K  M  Q  V  N  L  R  L  *  N  P  R  K  *  Y  R  R  F  N  W  A  R  C  L  E  F  G  T  F  *  I  F  V  I  I  F  T  T  N  R  Y  S  R  F  F  H  F  R  R  L  L  R  P  H  N  L  A  V  G  L  C  *  Y  S  L  C  G  D  F  V  F  I  R  Y  Q  K  S  V  N  L  N :   L  K  Q  Y  S  H  *  L  Q  F  T  H  W  V  M  F  *  R  T  S  V  L  G  E  *  P  F  R  L  L  T  Q  S  K  Q  W  N  H  S  S  P  C  F  F  P  R  C  F  L  Q  S :   G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I   : G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R :   R  H  W  T  I  S  I  C  S  L  *  S  Q  S  F  H  S  S  F  W  Y  L  L  P  F  *  W  K  G  S  S  L  L  H  P  I  Y  N  I  L  L :   Q  V  K  V  Y  M  S  E  S  F  V  *  D  F  F  *  L  D  S  A  C  T  V  T  N  R :   F  H  T  *  Y  Y  R  W  Y  H  Q  *  H  M  Q  L  V  I  V  *  R  E  W  *  S  L  Y  P  Q  S  S  S  S  K  H  P  F  H  Q  L  T  P  L  :  G  L  L  W  L  *  L  E  S  F  F  I  Q  E  *  R  D  Y  G  G  S  Q  K  M  R  D  K  *  R  K  L  S  N  P  V  V  I  M  P  C  K  E  K  V  N  Q  K  Q  E  L  V  D  W  V  R  V  I  G  R  L  G  Q  E  L  A  S  S  L  R  I  P  V  N  N  G  R  M  A  K  D  G  R  R  Y  L  K  Q  S  L  L  H  F  K  M  C  N  L  Y  I  S  A  I  P  K  S  T  T  K  A  Y  D  *  N  *  I  I  L  I  W  R  K  I  I :   W  K  L  A  G  A  S  E  P  *  P  C  L  S  L  N  K  S  Q  P  I  S  Q  N  M  E  K  K  R  </second_frame>
            <third_frame>   V  V  S  P  P  C  *  S  C  A  I  F  I  F  Y  L  L  P  T  Y  R  C  I  I  E  I  S  M  E  E  C  Q  P  S  M  S  I  *  A  D  T  K  *  I  *  L  S  T  I  N  H  G  N  L  Y  I  L  H  V  S  S  H  T  I  S  K  A  S  K  T  F  Q  *  N  L  H  Y  Q  *  *  *  V  Q  L  S  S  S  A  L  C  F  A  Q  A  K  K  L  F  D  S  K  N  *  C  C  Y  S  G  E  K  F  M  *  T  G  S  V  Q  S  E  G  C  S  R  K  C  R  *  I  *  G  C  E  T  Q  G  S  D  T  D  A  S  T  G  R  D  V  W  N  L  V  P  F  E  Y  L  L  *  Y  L  Q  Q  T  G  T  Q  G  F  S  I  S  G  D  C  Y  G  L  T  I  W  L  W  D  F  V  N  T  L  Y  V  G  I  S  S  S  S  D  T  K  N  Q  *  I  S   : I  *  S  N  I  R  T  S  C  N  S  H  I  G  *  C  S  N  E  H  Q  S  W  E  S  S  R  F  V  Y  S  H  N  Q  S  N  G  T  I  L  H  R  A  S  F  R  A  V  S  C  R   : A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  :  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G   : G  G  I  G  Q  Y  Q  F  V  L  Y  D  H  N  H  F  I  H  P  F  G  T  C  C  H  F  D  G  R  D  Q  A  Y  S  I  L  S  T  I  Y  C   : C  K  S  R  F  T  C  Q  R  A  L  C  E  T  S  F  S  W  I  L  L  A  Q  L  P  T   : G  F  I  H  D  T  T  D  G  I  T  S  D  T  C  S  W  *  L  S  E  E  S  G  S  H  C  I  L  S  H  L  L  P  N  T  R  F  T  N  *  L  P  W :   D  C  Y  G  S  S  W  S  L  S  L  F  K  S  K  E  I  T  G  E  A  K  R  C  V  T  S  E  E  S  C  Q  I  L  *  S  *  C  P  V  K  K  R  L  T  K  N  R  N  S  W  I  G  F  E  L  *  E  D  *  V  R  N  *  Q  V  V  *  E  S  L  S  I  M  E  G  W  Q  K  M  E  E  D  I  *  S  N  R  Y  C  I  S  R  C  V  I  Y  T  L  V  Q  Y  Q  N  Q  L  L  R  P  M  T  E  T  E  L  F  *  S  G  G  K  S   : Y  G  N  *  L  E  H  Q  S  H  D  H  V  Y  L  *  T  N  H  N  Q  L  V  R  T  W  K  K  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83103" stop="83567"/>
                    <exon start="84238" stop="84390"/>
                    <exon start="84631" stop="84716"/>
                    <exon start="85007" stop="85091"/>
                    <exon start="85349" stop="85471"/>
                    <exon start="85564" stop="85641"/>
                    <exon start="85979" stop="86108"/>
                    <exon start="86246" stop="86322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGTSTFYMSLPTPFLKPQKPSNKIFITSSNKFNSALQHYALHKPKSCSIRKTSVAILAKSSCRLDLFKVRAVAENAGESEVVKPKEVIQTLQLGAMFGIWYLLNICYNIYNKQVLKVFPFPATVTASQFGCGTLLILFMWGFRLHPIPKISKSQFKAIFALAAIHTLGNVLTNISLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPSPWIVSSLVPVVGGVALASMTEASFNWIGFGSAMASNLTNQSRNVFSKKFMVKEEEALDNINLFSMITIISFILLVPAAILMEGIKLTPSYLQYTAASQGLHVRELCVRLLLAGFCLHSYQQVSYMILQMVSPVTHAVGNCLKRVVVIVSSVIFFQTPVSPINSLGTAMALAGVFLYSRVKRLRGKPKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86330" stop="86581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSNPVVIMPCKEKVNQKQELVDWVRVIGRLGQELASSLRIPVNNGRMAKDGRRYLKQSLLHFKMCNLYISAIPKSTTKAYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84456" e_stop="85211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="84456" e_stop="85211" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84456" stop="85211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTACTTGTTTACTAAACGCGTGATATAAGCTATAACCGCGTAGCATAACTTTATGGAGAACAGCCTCATGTATCTTTGATTCTGACGATCTGATTCTTATCCCTTTGAGTATTACACTAGAAATTCAGCTTATTTAGCATATATAATGATGAGCTTGTTGTGATCCACGTAGCGGCCATCTCCTTGGATTGTATCTTCTCTGGTTCCCGTTGTTGGTGGAGTAGCATTAGCATCAATGACAGAGGCCTCTTTTAATTGGTATGTCCCTCCCTAACTTTGTAAATTTTATCGTTTTGTTTCTGTAGGTTAGACCGGTCTATATATTGCTCTCTCCTTGTGCCTATTTTGCTGTAGGGGGCGGTTTACAGGTGTACAACCTCTGTAACTTCATGGTATATTTATGGATTGACAAGTTCTTATTAGAAGACTGCAATTTCCTAACTGTCGCACTATCTACTCCTGTTAATAGTTTTGCACAGTTATTGTTGTTACTGTGGGGTCTTAATAGCAGTTATACATTGATTCTGAACTCTCTGTCTTTGGAACAGGATAGGCTTTGGCAGTGCAATGGCTTCCAATCTGACTAACCAATCGCGTAATGTATTTAGCAAAAAATTCATGGTTAAAGAGGAGGTATAGACACTAAACATTCAGATGCTAGGAAAATAAATACTCAATTATTCTAACATCATAGGTATTCAAATTCAGCTATCTTACTTCTTATATTAAAAAAACAGTCGTAGCCTTGGGGTG</gDNA_template>
            <first_frame> T  L  L  V  Y  *  T  R  D  I  S  Y  N  R  V  A  *  L  Y  G  E  Q  P  H  V  S  L  I  L  T  I  *  F  L  S  L  *  V  L  H  *  K  F  S  L  F  S  I  Y  N  D  E  L  V  V  I  H  V  A  A  I  S  L  D  C  I  F  S  G  S  R  C  W  W  S  S  I  S  I  N  D  R  G  L  F  *  L  V  C  P  S  L  T  L  *  I  L  S  F  C  F  C  R  L  D  R  S  I  Y  C  S  L  L  V  P  I  L  L  *  G  A  V  Y  R  C  T  T  S  V  T  S  W  Y  I  Y  G  L  T  S  S  Y  *  K  T  A  I  S  *  L  S  H  Y  L  L  L  L  I  V  L  H  S  Y  C  C  Y  C  G  V  L  I  A  V  I  H  *  F  *  T  L  C  L  W  N  R  I  G  F  G  S  A  M  A  S  N  L  T  N  Q  S  R  N  V  F  S  K  K  F  M  V  K  E  E  V  *  T  L  N  I  Q  M  L  G  K  *  I  L  N  Y  S  N  I  I  G  I  Q  I  Q  L  S  Y  F  L  Y  *  K  N  S  R  S  L  G  V </first_frame>
            <second_frame>  L  Y  L  F  T  K  R  V  I  *  A  I  T  A  *  H  N  F  M  E  N  S  L  M  Y  L  *  F  *  R  S  D  S  Y  P  F  E  Y  Y  T  R  N  S  A  Y  L  A  Y  I  M  M  S  L  L  *  S  T  *  R  P  S  P  W  I  V  S  S  L  V  P  V  V  G  G  V  A  L  A  S  M  T  E  A  S  F  N  W  Y  V  P  P  *  L  C  K  F  Y  R  F  V  S  V  G  *  T  G  L  Y  I  A  L  S  L  C  L  F  C  C  R  G  R  F  T  G  V  Q  P  L  *  L  H  G  I  F  M  D  *  Q  V  L  I  R  R  L  Q  F  P  N  C  R  T  I  Y  S  C  *  *  F  C  T  V  I  V  V  T  V  G  S  *  *  Q  L  Y  I  D  S  E  L  S  V  F  G  T  G  *  A  L  A  V  Q  W  L  P  I  *  L  T  N  R  V  M  Y  L  A  K  N  S  W  L  K  R  R  Y  R  H  *  T  F  R  C  *  E  N  K  Y  S  I  I  L  T  S  *  V  F  K  F  S  Y  L  T  S  Y  I  K  K  T  V  V  A  L  G   </second_frame>
            <third_frame>   F  T  C  L  L  N  A  *  Y  K  L  *  P  R  S  I  T  L  W  R  T  A  S  C  I  F  D  S  D  D  L  I  L  I  P  L  S  I  T  L  E  I  Q  L  I  *  H  I  *  *  *  A  C  C  D  P  R  S  G  H  L  L  G  L  Y  L  L  W  F  P  L  L  V  E  *  H  *  H  Q  *  Q  R  P  L  L  I  G  M  S  L  P  N  F  V  N  F  I  V  L  F  L  *  V  R  P  V  Y  I  L  L  S  P  C  A  Y  F  A  V  G  G  G  L  Q  V  Y  N  L  C  N  F  M  V  Y  L  W  I  D  K  F  L  L  E  D  C  N  F  L  T  V  A  L  S  T  P  V  N  S  F  A  Q  L  L  L  L  L  W  G  L  N  S  S  Y  T  L  I  L  N  S  L  S  L  E  Q  D  R  L  W  Q  C  N  G  F  Q  S  D  *  P  I  A  *  C  I  *  Q  K  I  H  G  *  R  G  G  I  D  T  K  H  S  D  A  R  K  I  N  T  Q  L  F  *  H  H  R  Y  S  N  S  A  I  L  L  L  I  L  K  K  Q  S  *  P  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84764" stop="85045"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRPVYILLSPCAYFAVGGGLQVYNLCNFMVYLWIDKFLLEDCNFLTVALSTPVNSFAQLLLLLWGLNSSYTLILNSLSLEQDRLWQCNGFQSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="97013" PGL_stop="86913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97013" e_stop="96851"/>
            <exon e_start="93312" e_stop="92979"/>
            <exon e_start="92004" e_stop="91882"/>
            <exon e_start="91195" e_stop="91127"/>
            <exon e_start="90613" e_stop="90344"/>
            <exon e_start="89672" e_stop="89322"/>
            <exon e_start="89125" e_stop="88848"/>
            <exon e_start="87967" e_stop="87593"/>
            <exon e_start="87509" e_stop="86913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.947" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="97013" e_stop="96851" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.947">
            <gDNA_intron_boundary i_start="96850" i_stop="93313" i_length="3538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93312" e_stop="92979" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92978" i_stop="92005" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92004" e_stop="91882" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91881" i_stop="91196" i_length="686"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91195" e_stop="91127" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91126" i_stop="90614" i_length="513"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90613" e_stop="90344" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.866" acc_prob="0.950">
            <gDNA_intron_boundary i_start="90343" i_stop="89673" i_length="671"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89672" e_stop="89322" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="89321" i_stop="89126" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89125" e_stop="88848" e_length="278"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88847" i_stop="87968" i_length="880"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87967" e_stop="87593" e_length="375"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87592" i_stop="87510" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87509" e_stop="86913" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97013" stop="96851"/>
              <exon start="93312" stop="92979"/>
              <exon start="92004" stop="91882"/>
              <exon start="91195" stop="91127"/>
              <exon start="90613" stop="90344"/>
              <exon start="89672" stop="89322"/>
              <exon start="89125" stop="88848"/>
              <exon start="87967" stop="87593"/>
              <exon start="87509" stop="86913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTTCTCTCTGCTTCTCCGCTGCTTCACTCATACCTTTGTATACTTTTATATATAAATTATTTAGCAGAGTGAGTGGGAGGGAGAACGGACGGGAGACATCGTCGGAGGTGGGAATCGTTTGTATCAGCTTCTTTTATCGTCATCGGAAAGACTTTGTCAG : AGGTAATTGGATACTGAAGCTTGAGATGGCTGCTACTGCAACTGCATCTTCTACTGGTCCACGTTATGCACCAGAGGATCCCACCCTTCCCAAACCTTGGAAAGGCCTAGTTGATGGTAAGACTGGATATCTCTATTTTTGGAATCCAGAGACCAATACTACCCAATACGAGAAGCCTGTTGCTACTCCTCATGTGGGTGCTGCACAACATAAATCCTCTGTATCTGTAAGTTCATCAGTTGAGAGGCCTTCTCAAAGTCAATGTTCTGACCATGGTGACAACAGAGGTACCAATGGTGCCTTGAGCAAACTTTCCTCTGGAGAGGGTATTCAG : ACTGCAAGAGCAAATGAGCTTTCCCGCGATGAAACATCTGCGCCTAAAGGTTATAGTGCTTCAGCTGCCGCGAGTGACATATCTCCAGATGCCTATCGCCGTCAGCATGAAATTTCTGTCTCA : GGAGGTGATGTGCCCCCACCTTTCACATCGTTTGAAGCTACTGGGTTTCCTTCAGAGATTTTGAGGGAG : ATACATCAAGCTGGGTTTCCTGCTCCTTCCCCAATACAGGCACAGTCCTGGCCCATTGCACTTCAGGGCCGTGACATAGTAGCTGTTGCAAAGACTGGGTCTGGAAAAACTCTAGGTTTCTTGCTTCCTGGCTTTATTCTTCTAAAGCAACGTCGGAGTAATCCTCAATCAGGCCCTACTATTTTGGTTCTCTCGCCAACAAGAGAATTAGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGTAGATCTTCAAAGATTTCTTGCACG : TGTTTATATGGAGGCGCCCCAAAAGGCCCTCAGCTACGAGATCTGGATAGGGGAGTTGATATTGTTGTTGCTACCCCTGGTCGATTGAATGATATTTTGGAGATGAGAAGAGTTAGGCTGGATCAAGTTTCTTACTTGGTGTTAGATGAAGCGGATCGTATGCTGGACATGGGATTCGAACCTCAGATAAGGAAGATTGTGAAGGAGGTGCCTACGCGACGGCAGACACTGATGTACACAGCAACATGGCCTAAGGAGGTCCGTAGAATTGCAGCTGATCTATTGGTTAATCCAGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCGAACAAGTCTATTACACAG : TACATTGAAGTCTTGTCATATATGGATAAACAAAAGCGTCTAGACCAGATCTTGAGATCCCAAGAGCCTGGATCAAAAATCATTATCTTCTGTTCAACTAAGAAAATGTGTGACCAACTTGCTCGCAATCTTACACACCCATTTGGAGCTGCTGCTATTCATGGTGATAAATCTCAGGGTGAGAGGGATCATGTACTGAGCCAGTTCCGCACTGGCAAGTCCCCCGTTCTTGTTGCAACTGATGTTGCTGCTCGGGGCTTGGATGTCAAAGATATCAG : GGTGGTGGTCAACTATGATTTTCCAACTGGTATAGAGGACTATGTCCACAGAATAGGAAGAACTGGTCGGGCTGGTGCGACTGGTGAGGCCTACACATTTTTTGTTGACCAGGATGCTAAACATGCTTCAGATCTTATTAAAGTTTTAGAAGGAGCAAATCAGCAAGTGCCTACTGAACTACGTGATATGGCTTCTCGAGGAGGTGGTATGGGGAGGGCTAGGCGTCAATGGGATTCTGGCTCAGGTGGACGGGAAGGAGGACATGGGGGACGTTATGATGCTGGCTACGGTGGACGAGATGGAGCAAGGGGTGGTTGGGAAGCCCCTTCATCAGAAAGAAGTGGACGTGTTTATGACTCGGATTCACGTGACAG : AGATAGACATGGTCATGGCTCTGATGCTCCAGCTAGTTTCCATGGTCGAAGCTTCCATGAAACTATGATGCAGGGTTCACAGAGACGTGATAGAAGTAGGAGCAGAAGCCCTAATAGAGGTTCTGGATGGGGTGACAGAAAAGGCAGGGAGCGAAGTCGTAGCCGTAGTGCTGAAAGATCTGAGCGGACTCGTATTCAAGTTCCAGTAGGTGGCAGTTTCCATGAAGCCATGATGGGCTTCACTAGATCATCAGCTGGTGATTCCCGAAAGGACTGGGAAAAAGAAAGATCCCAAGGTGATGGGAAATCTGGCGATGGACCCCGTGCTAACAATTGGGAGGAGTAAGAAGGTAAAGGAGAGCCTGTGTTGATTTTTGATGTGTTGTAGGAAATGCTGGAAGAAAAAGGGGTCATTTTTGTTAAACTTTAACCACTACATGTTTTGGCAAACAGTGTTCTCGGATAGAAGAAGCTTTTAGCGTATTACTGGAAATAGATAGCTGAAAATCTGCAAATGGGAAGTTTTTGACGGATGTAAATGTAAAGTATTTTACCGTCAAACTTTGTTTAATGGAATCAGCCCACTTCTAAGTGTTG</gDNA_template>
            <first_frame> R  F  L  S  A  S  P  L  L  H  S  Y  L  C  I  L  L  Y  I  N  Y  L  A  E  *  V  G  G  R  T  D  G  R  H  R  R  R  W  E  S  F  V  S  A  S  F  I  V  I  G  K  T  L  S   : E  V  I  G  Y  *  S  L  R  W  L  L  L  Q  L  H  L  L  L  V  H  V  M  H  Q  R  I  P  P  F  P  N  L  G  K  A  *  L  M  V  R  L  D  I  S  I  F  G  I  Q  R  P  I  L  P  N  T  R  S  L  L  L  L  L  M  W  V  L  H  N  I  N  P  L  Y  L  *  V  H  Q  L  R  G  L  L  K  V  N  V  L  T  M  V  T  T  E  V  P  M  V  P  *  A  N  F  P  L  E  R  V  F  R :   L  Q  E  Q  M  S  F  P  A  M  K  H  L  R  L  K  V  I  V  L  Q  L  P  R  V  T  Y  L  Q  M  P  I  A  V  S  M  K  F  L  S  Q :   E  V  M  C  P  H  L  S  H  R  L  K  L  L  G  F  L  Q  R  F  *  G  R :   Y  I  K  L  G  F  L  L  L  P  Q  Y  R  H  S  P  G  P  L  H  F  R  A  V  T  *  *  L  L  Q  R  L  G  L  E  K  L  *  V  S  C  F  L  A  L  F  F  *  S  N  V  G  V  I  L  N  Q  A  L  L  F  W  F  S  R  Q  Q  E  N  *  P  H  R  Y  K  M  K  L  *  S  L  V  D  L  Q  R  F  L  A  R :   V  Y  M  E  A  P  Q  K  A  L  S  Y  E  I  W  I  G  E  L  I  L  L  L  L  P  L  V  D  *  M  I  F  W  R  *  E  E  L  G  W  I  K  F  L  T  W  C  *  M  K  R  I  V  C  W  T  W  D  S  N  L  R  *  G  R  L  *  R  R  C  L  R  D  G  R  H  *  C  T  Q  Q  H  G  L  R  R  S  V  E  L  Q  L  I  Y  W  L  I  Q  F  R  L  T  L  G  M  L  M  S  L  L  R  T  S  L  L  H  S :   T  L  K  S  C  H  I  W  I  N  K  S  V  *  T  R  S  *  D  P  K  S  L  D  Q  K  S  L  S  S  V  Q  L  R  K  C  V  T  N  L  L  A  I  L  H  T  H  L  E  L  L  L  F  M  V  I  N  L  R  V  R  G  I  M  Y  *  A  S  S  A  L  A  S  P  P  F  L  L  Q  L  M  L  L  L  G  A  W  M  S  K  I  S   : G  W  W  S  T  M  I  F  Q  L  V  *  R  T  M  S  T  E  *  E  E  L  V  G  L  V  R  L  V  R  P  T  H  F  L  L  T  R  M  L  N  M  L  Q  I  L  L  K  F  *  K  E  Q  I  S  K  C  L  L  N  Y  V  I  W  L  L  E  E  V  V  W  G  G  L  G  V  N  G  I  L  A  Q  V  D  G  K  E  D  M  G  D  V  M  M  L  A  T  V  D  E  M  E  Q  G  V  V  G  K  P  L  H  Q  K  E  V  D  V  F  M  T  R  I  H  V  T   : E  I  D  M  V  M  A  L  M  L  Q  L  V  S  M  V  E  A  S  M  K  L  *  C  R  V  H  R  D  V  I  E  V  G  A  E  A  L  I  E  V  L  D  G  V  T  E  K  A  G  S  E  V  V  A  V  V  L  K  D  L  S  G  L  V  F  K  F  Q  *  V  A  V  S  M  K  P  *  W  A  S  L  D  H  Q  L  V  I  P  E  R  T  G  K  K  K  D  P  K  V  M  G  N  L  A  M  D  P  V  L  T  I  G  R  S  K  K  V  K  E  S  L  C  *  F  L  M  C  C  R  K  C  W  K  K  K  G  S  F  L  L  N  F  N  H  Y  M  F  W  Q  T  V  F  S  D  R  R  S  F  *  R  I  T  G  N  R  *  L  K  I  C  K  W  E  V  F  D  G  C  K  C  K  V  F  Y  R  Q  T  L  F  N  G  I  S  P  L  L  S  V  </first_frame>
            <second_frame>  G  F  S  L  L  L  R  C  F  T  H  T  F  V  Y  F  Y  I  *  I  I  *  Q  S  E  W  E  G  E  R  T  G  D  I  V  G  G  G  N  R  L  Y  Q  L  L  L  S  S  S  E  R  L  C  Q  :  R  *  L  D  T  E  A  *  D  G  C  Y  C  N  C  I  F  Y  W  S  T  L  C  T  R  G  S  H  P  S  Q  T  L  E  R  P  S  *  W  *  D  W  I  S  L  F  L  E  S  R  D  Q  Y  Y  P  I  R  E  A  C  C  Y  S  S  C  G  C  C  T  T  *  I  L  C  I  C  K  F  I  S  *  E  A  F  S  K  S  M  F  *  P  W  *  Q  Q  R  Y  Q  W  C  L  E  Q  T  F  L  W  R  G  Y  S   : D  C  K  S  K  *  A  F  P  R  *  N  I  C  A  *  R  L  *  C  F  S  C  R  E  *  H  I  S  R  C  L  S  P  S  A  *  N  F  C  L   : R  R  *  C  A  P  T  F  H  I  V  *  S  Y  W  V  S  F  R  D  F  E  G   : D  T  S  S  W  V  S  C  S  F  P  N  T  G  T  V  L  A  H  C  T  S  G  P  *  H  S  S  C  C  K  D  W  V  W  K  N  S  R  F  L  A  S  W  L  Y  S  S  K  A  T  S  E  *  S  S  I  R  P  Y  Y  F  G  S  L  A  N  K  R  I  S  H  T  D  T  R  *  S  C  E  V  W  *  I  F  K  D  F  L  H   : V  F  I  W  R  R  P  K  R  P  S  A  T  R  S  G  *  G  S  *  Y  C  C  C  Y  P  W  S  I  E  *  Y  F  G  D  E  K  S  *  A  G  S  S  F  L  L  G  V  R  *  S  G  S  Y  A  G  H  G  I  R  T  S  D  K  E  D  C  E  G  G  A  Y  A  T  A  D  T  D  V  H  S  N  M  A  *  G  G  P  *  N  C  S  *  S  I  G  *  S  S  S  G  *  H  W  E  C  *  *  A  C  C  E  Q  V  Y  Y  T   : V  H  *  S  L  V  I  Y  G  *  T  K  A  S  R  P  D  L  E  I  P  R  A  W  I  K  N  H  Y  L  L  F  N  *  E  N  V  *  P  T  C  S  Q  S  Y  T  P  I  W  S  C  C  Y  S  W  *  *  I  S  G  *  E  G  S  C  T  E  P  V  P  H  W  Q  V  P  R  S  C  C  N  *  C  C  C  S  G  L  G  C  Q  R  Y  Q  :  G  G  G  Q  L  *  F  S  N  W  Y  R  G  L  C  P  Q  N  R  K  N  W  S  G  W  C  D  W  *  G  L  H  I  F  C  *  P  G  C  *  T  C  F  R  S  Y  *  S  F  R  R  S  K  S  A  S  A  Y  *  T  T  *  Y  G  F  S  R  R  W  Y  G  E  G  *  A  S  M  G  F  W  L  R  W  T  G  R  R  T  W  G  T  L  *  C  W  L  R  W  T  R  W  S  K  G  W  L  G  S  P  F  I  R  K  K  W  T  C  L  *  L  G  F  T  *  Q  :  R  *  T  W  S  W  L  *  C  S  S  *  F  P  W  S  K  L  P  *  N  Y  D  A  G  F  T  E  T  *  *  K  *  E  Q  K  P  *  *  R  F  W  M  G  *  Q  K  R  Q  G  A  K  S  *  P  *  C  *  K  I  *  A  D  S  Y  S  S  S  S  R  W  Q  F  P  *  S  H  D  G  L  H  *  I  I  S  W  *  F  P  K  G  L  G  K  R  K  I  P  R  *  W  E  I  W  R  W  T  P  C  *  Q  L  G  G  V  R  R  *  R  R  A  C  V  D  F  *  C  V  V  G  N  A  G  R  K  R  G  H  F  C  *  T  L  T  T  T  C  F  G  K  Q  C  S  R  I  E  E  A  F  S  V  L  L  E  I  D  S  *  K  S  A  N  G  K  F  L  T  D  V  N  V  K  Y  F  T  V  K  L  C  L  M  E  S  A  H  F  *  V  L </second_frame>
            <third_frame>   V  S  L  C  F  S  A  A  S  L  I  P  L  Y  T  F  I  Y  K  L  F  S  R  V  S  G  R  E  N  G  R  E  T  S  S  E  V  G  I  V  C  I  S  F  F  Y  R  H  R  K  D  F  V  R :   G  N  W  I  L  K  L  E  M  A  A  T  A  T  A  S  S  T  G  P  R  Y  A  P  E  D  P  T  L  P  K  P  W  K  G  L  V  D  G  K  T  G  Y  L  Y  F  W  N  P  E  T  N  T  T  Q  Y  E  K  P  V  A  T  P  H  V  G  A  A  Q  H  K  S  S  V  S  V  S  S  S  V  E  R  P  S  Q  S  Q  C  S  D  H  G  D  N  R  G  T  N  G  A  L  S  K  L  S  S  G  E  G  I  Q  :  T  A  R  A  N  E  L  S  R  D  E  T  S  A  P  K  G  Y  S  A  S  A  A  A  S  D  I  S  P  D  A  Y  R  R  Q  H  E  I  S  V  S  :  G  G  D  V  P  P  P  F  T  S  F  E  A  T  G  F  P  S  E  I  L  R  E  :  I  H  Q  A  G  F  P  A  P  S  P  I  Q  A  Q  S  W  P  I  A  L  Q  G  R  D  I  V  A  V  A  K  T  G  S  G  K  T  L  G  F  L  L  P  G  F  I  L  L  K  Q  R  R  S  N  P  Q  S  G  P  T  I  L  V  L  S  P  T  R  E  L  A  T  Q  I  Q  D  E  A  V  K  F  G  R  S  S  K  I  S  C  T  :  C  L  Y  G  G  A  P  K  G  P  Q  L  R  D  L  D  R  G  V  D  I  V  V  A  T  P  G  R  L  N  D  I  L  E  M  R  R  V  R  L  D  Q  V  S  Y  L  V  L  D  E  A  D  R  M  L  D  M  G  F  E  P  Q  I  R  K  I  V  K  E  V  P  T  R  R  Q  T  L  M  Y  T  A  T  W  P  K  E  V  R  R  I  A  A  D  L  L  V  N  P  V  Q  V  N  I  G  N  V  D  E  L  V  A  N  K  S  I  T  Q  :  Y  I  E  V  L  S  Y  M  D  K  Q  K  R  L  D  Q  I  L  R  S  Q  E  P  G  S  K  I  I  I  F  C  S  T  K  K  M  C  D  Q  L  A  R  N  L  T  H  P  F  G  A  A  A  I  H  G  D  K  S  Q  G  E  R  D  H  V  L  S  Q  F  R  T  G  K  S  P  V  L  V  A  T  D  V  A  A  R  G  L  D  V  K  D  I  R :   V  V  V  N  Y  D  F  P  T  G  I  E  D  Y  V  H  R  I  G  R  T  G  R  A  G  A  T  G  E  A  Y  T  F  F  V  D  Q  D  A  K  H  A  S  D  L  I  K  V  L  E  G  A  N  Q  Q  V  P  T  E  L  R  D  M  A  S  R  G  G  G  M  G  R  A  R  R  Q  W  D  S  G  S  G  G  R  E  G  G  H  G  G  R  Y  D  A  G  Y  G  G  R  D  G  A  R  G  G  W  E  A  P  S  S  E  R  S  G  R  V  Y  D  S  D  S  R  D  R :   D  R  H  G  H  G  S  D  A  P  A  S  F  H  G  R  S  F  H  E  T  M  M  Q  G  S  Q  R  R  D  R  S  R  S  R  S  P  N  R  G  S  G  W  G  D  R  K  G  R  E  R  S  R  S  R  S  A  E  R  S  E  R  T  R  I  Q  V  P  V  G  G  S  F  H  E  A  M  M  G  F  T  R  S  S  A  G  D  S  R  K  D  W  E  K  E  R  S  Q  G  D  G  K  S  G  D  G  P  R  A  N  N  W  E  E  *  E  G  K  G  E  P  V  L  I  F  D  V  L  *  E  M  L  E  E  K  G  V  I  F  V  K  L  *  P  L  H  V  L  A  N  S  V  L  G  *  K  K  L  L  A  Y  Y  W  K  *  I  A  E  N  L  Q  M  G  S  F  *  R  M  *  M  *  S  I  L  P  S  N  F  V  *  W  N  Q  P  T  S  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97011" stop="96851"/>
                    <exon start="93312" stop="92979"/>
                    <exon start="92004" stop="91882"/>
                    <exon start="91195" stop="91127"/>
                    <exon start="90613" stop="90344"/>
                    <exon start="89672" stop="89322"/>
                    <exon start="89125" stop="88848"/>
                    <exon start="87967" stop="87593"/>
                    <exon start="87509" stop="87164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2304</number_coding_nucleotides>
                  <number_encoded_amino_acids>768</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLCFSAASLIPLYTFIYKLFSRVSGRENGRETSSEVGIVCISFFYRHRKDFVRGNWILKLEMAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYEKPVATPHVGAAQHKSSVSVSSSVERPSQSQCSDHGDNRGTNGALSKLSSGEGIQTARANELSRDETSAPKGYSASAAASDISPDAYRRQHEISVSGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQIQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTHPFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIEDYVHRIGRTGRAGATGEAYTFFVDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGRARRQWDSGSGGREGGHGGRYDAGYGGRDGARGGWEAPSSERSGRVYDSDSRDRDRHGHGSDAPASFHGRSFHETMMQGSQRRDRSRSRSPNRGSGWGDRKGRERSRSRSAERSERTRIQVPVGGSFHEAMMGFTRSSAGDSRKDWEKERSQGDGKSGDGPRANNWEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="107228" PGL_stop="100054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107228" e_stop="107058"/>
            <exon e_start="106339" e_stop="106139"/>
            <exon e_start="106050" e_stop="105958"/>
            <exon e_start="103793" e_stop="103734"/>
            <exon e_start="103633" e_stop="103361"/>
            <exon e_start="102356" e_stop="102285"/>
            <exon e_start="102212" e_stop="102156"/>
            <exon e_start="101441" e_stop="101301"/>
            <exon e_start="101202" e_stop="101152"/>
            <exon e_start="101079" e_stop="100984"/>
            <exon e_start="100878" e_stop="100795"/>
            <exon e_start="100608" e_stop="100506"/>
            <exon e_start="100401" e_stop="100054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="0.988"/>
          <exon-intron don_prob="0.867" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="107228" e_stop="107058" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="107057" i_stop="106340" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106339" e_stop="106139" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.867" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106138" i_stop="106051" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106050" e_stop="105958" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="105957" i_stop="103794" i_length="2164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103793" e_stop="103734" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.874">
            <gDNA_intron_boundary i_start="103733" i_stop="103634" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103633" e_stop="103361" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.792" acc_prob="0.985">
            <gDNA_intron_boundary i_start="103360" i_stop="102357" i_length="1004"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102356" e_stop="102285" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102284" i_stop="102213" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102212" e_stop="102156" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.823" acc_prob="0.947">
            <gDNA_intron_boundary i_start="102155" i_stop="101442" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101441" e_stop="101301" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="101300" i_stop="101203" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="101202" e_stop="101152" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="101151" i_stop="101080" i_length="72"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="101079" e_stop="100984" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.591">
            <gDNA_intron_boundary i_start="100983" i_stop="100879" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="100878" e_stop="100795" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100794" i_stop="100609" i_length="186"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="100608" e_stop="100506" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100505" i_stop="100402" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="100401" e_stop="100054" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107228" stop="107058"/>
              <exon start="106339" stop="106139"/>
              <exon start="106050" stop="105958"/>
              <exon start="103793" stop="103734"/>
              <exon start="103633" stop="103361"/>
              <exon start="102356" stop="102285"/>
              <exon start="102212" stop="102156"/>
              <exon start="101441" stop="101301"/>
              <exon start="101202" stop="101152"/>
              <exon start="101079" stop="100984"/>
              <exon start="100878" stop="100795"/>
              <exon start="100608" stop="100506"/>
              <exon start="100401" stop="100054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTGAGAAAAATGAAAGAAGAGCAGCATTGCAGAAGTCTATAGCCAAGAACCTGAAAACTTGGCCATACGCCATTTTCACTTCCACTTTATTTCTTCCGCGCTTAGGGTTTTGCTGTTTCACTCACAATTTTCCATCGCCAATGCGAGCAATTCACTTCACCGCTGCAG : GTTTTGAGAAGCAGACAATCTGTCACTTGAGTCATAACCATTTATCAGTACTATAAGGAAGTTTATTTGTTATTCAGTGACATGGCTTCGGGCAGTATTATGTCTTCAGCAGCTGGCAAACCTATTACTGATGTTGTGCTTATTGACAACCTACCTAAAGAAATAAATGCAATGAAGATCAACGATGACAAAGAAGGAAAG : GAAATGGAAGCCGCTGTTGTGGATGGGAATGGAACTGAAACAGGTCACATCATTGTGACGACTATTGGGGGGAAAAATGGTCAGCCAAAGCAG : ACCATAAGTTACATGGCGGAGCGTGTAGTTGGACAGGGTTCCTTTGGAATTGTGTTCCAG : GCCAAATGCCTTGAAACAGGAGAAACCGTGGCAATAAAAAAGGTCTTGCAGGACAAGAGATACAAGAATCGGGAATTGCAGACTATGCGACTTCTTGATCATCCTAGTATTGTTTCACTGAAGCACTGCTTCTTTTCGACCACAGAAAAGGATGAGCTTTATCTAAATTTGGTTCTAGAATTTGTACCTGAAACTCTCTACCGTGTGTTAAGACATTACAGCAAAGCAAACCAACGGATGCCTATTATATATGTCAAACTGTACACATATCAG : ATATTTAGAGCTTTGGCTTACATACATGGGATAGGAGTCTGCCACAGGGACATCAAACCTCAGAATTTACTG : GTCAACCCCCACACACATCAGCTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTCCTG : GTCAAAGGCGAGCCAAACATTTCATATATCTGTTCACGTTATTATCGTGCGCCCGAACTAATATTCGGAGCAACTGAGTACACCAATGCAATTGACATTTGGTCTGTGGGTTGTGTCCTAGCTGAACTGCTTCTTGGACAG : CCCCTCTTTCCTGGTGAGAGTGGTGTAGATCAGCTCGTCGAAATAATCAAG : GTTCTTGGAACACCAACTCGTGAAGAAATCAAGTGTATGAATCCAAATTACACCGAATTTAAGTTCCCGCAAATCAAAGCTCACCCCTGGCACAAG : ATTTTTCACAAGCGGATGCCTCCTGAAGCTGTAGATCTTGTGATAAGGCTTCTACAGTATTCTCCAAATCTGAGGTGCACAGCG : TTGGAAGCTCTTGGTCACGCTTTCTTTGATGAGCTCCGTGACCCTAATGCTCGTCCTCCTAATGGTCGTCCATTGCCATCTCTCTTCAACTTCAGACCTCAAG : AGCTGAAAGGAGCGTCTTCAGAACTCTTAAACAAACTGTTACCAGAACATGCTAAAAAGCAGTGTCCCTTACTTGGAGTCTAGTCTGTAAGAATTTGTTTATCTTTTGTGAACTTGATCCTATTTATTATCACTGTTCAGAGAATTAGGAAAACCTTTTGACATCTCCATTAGTCTATTATATACCACTTCTTCGCCAATTATGTAATCAGCTGATTCCCCCCGTACTCTACTTAATTATTTGTAAATAGTAATGTATTACGGGATTTACCTTATTCCTTATCGACAATTTTATTTTTGTATGCACATCTTAGTTTGCATTTTTTACTGCATTTTGGTCGATTCTATT</gDNA_template>
            <first_frame> K  V  R  K  M  K  E  E  Q  H  C  R  S  L  *  P  R  T  *  K  L  G  H  T  P  F  S  L  P  L  Y  F  F  R  A  *  G  F  A  V  S  L  T  I  F  H  R  Q  C  E  Q  F  T  S  P  L  Q  :  V  L  R  S  R  Q  S  V  T  *  V  I  T  I  Y  Q  Y  Y  K  E  V  Y  L  L  F  S  D  M  A  S  G  S  I  M  S  S  A  A  G  K  P  I  T  D  V  V  L  I  D  N  L  P  K  E  I  N  A  M  K  I  N  D  D  K  E  G  K  :  E  M  E  A  A  V  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  K  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  S  I  V  S  L  K  H  C  F  F  S  T  T  E  K  D  E  L  Y  L  N  L  V  L  E  F  V  P  E  T  L  Y  R  V  L  R  H  Y  S  K  A  N  Q  R  M  P  I  I  Y  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  A  Y  I  H  G  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  L  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  N  A  I  D  I  W  S  V  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  I  R  L  L  Q  Y  S  P  N  L  R  C  T  A  :  L  E  A  L  G  H  A  F  F  D  E  L  R  D  P  N  A  R  P  P  N  G  R  P  L  P  S  L  F  N  F  R  P  Q   : E  L  K  G  A  S  S  E  L  L  N  K  L  L  P  E  H  A  K  K  Q  C  P  L  L  G  V  *  S  V  R  I  C  L  S  F  V  N  L  I  L  F  I  I  T  V  Q  R  I  R  K  T  F  *  H  L  H  *  S  I  I  Y  H  F  F  A  N  Y  V  I  S  *  F  P  P  Y  S  T  *  L  F  V  N  S  N  V  L  R  D  L  P  Y  S  L  S  T  I  L  F  L  Y  A  H  L  S  L  H  F  L  L  H  F  G  R  F  Y  </first_frame>
            <second_frame>  K  *  E  K  *  K  K  S  S  I  A  E  V  Y  S  Q  E  P  E  N  L  A  I  R  H  F  H  F  H  F  I  S  S  A  L  R  V  L  L  F  H  S  Q  F  S  I  A  N  A  S  N  S  L  H  R  C  R :   F  *  E  A  D  N  L  S  L  E  S  *  P  F  I  S  T  I  R  K  F  I  C  Y  S  V  T  W  L  R  A  V  L  C  L  Q  Q  L  A  N  L  L  L  M  L  C  L  L  T  T  Y  L  K  K  *  M  Q  *  R  S  T  M  T  K  K  E  R :   K  W  K  P  L  L  W  M  G  M  E  L  K  Q  V  T  S  L  *  R  L  L  G  G  K  M  V  S  Q  S  R :   P  *  V  T  W  R  S  V  *  L  D  R  V  P  L  E  L  C  S  R :   P  N  A  L  K  Q  E  K  P  W  Q  *  K  R  S  C  R  T  R  D  T  R  I  G  N  C  R  L  C  D  F  L  I  I  L  V  L  F  H  *  S  T  A  S  F  R  P  Q  K  R  M  S  F  I  *  I  W  F  *  N  L  Y  L  K  L  S  T  V  C  *  D  I  T  A  K  Q  T  N  G  C  L  L  Y  M  S  N  C  T  H  I  R :   Y  L  E  L  W  L  T  Y  M  G  *  E  S  A  T  G  T  S  N  L  R  I  Y  W :   S  T  P  T  H  I  S  L  S  F  V  I  L  G  V  Q  K  S  W :   S  K  A  S  Q  T  F  H  I  S  V  H  V  I  I  V  R  P  N  *  Y  S  E  Q  L  S  T  P  M  Q  L  T  F  G  L  W  V  V  S  *  L  N  C  F  L  D  S :   P  S  F  L  V  R  V  V  *  I  S  S  S  K  *  S  R :   F  L  E  H  Q  L  V  K  K  S  S  V  *  I  Q  I  T  P  N  L  S  S  R  K  S  K  L  T  P  G  T  R :   F  F  T  S  G  C  L  L  K  L  *  I  L  *  *  G  F  Y  S  I  L  Q  I  *  G  A  Q  R :   W  K  L  L  V  T  L  S  L  M  S  S  V  T  L  M  L  V  L  L  M  V  V  H  C  H  L  S  S  T  S  D  L  K  :  S  *  K  E  R  L  Q  N  S  *  T  N  C  Y  Q  N  M  L  K  S  S  V  P  Y  L  E  S  S  L  *  E  F  V  Y  L  L  *  T  *  S  Y  L  L  S  L  F  R  E  L  G  K  P  F  D  I  S  I  S  L  L  Y  T  T  S  S  P  I  M  *  S  A  D  S  P  R  T  L  L  N  Y  L  *  I  V  M  Y  Y  G  I  Y  L  I  P  Y  R  Q  F  Y  F  C  M  H  I  L  V  C  I  F  Y  C  I  L  V  D  S  I </second_frame>
            <third_frame>   S  E  K  N  E  R  R  A  A  L  Q  K  S  I  A  K  N  L  K  T  W  P  Y  A  I  F  T  S  T  L  F  L  P  R  L  G  F  C  C  F  T  H  N  F  P  S  P  M  R  A  I  H  F  T  A  A   : G  F  E  K  Q  T  I  C  H  L  S  H  N  H  L  S  V  L  *  G  S  L  F  V  I  Q  *  H  G  F  G  Q  Y  Y  V  F  S  S  W  Q  T  Y  Y  *  C  C  A  Y  *  Q  P  T  *  R  N  K  C  N  E  D  Q  R  *  Q  R  R  K   : G  N  G  S  R  C  C  G  W  E  W  N  *  N  R  S  H  H  C  D  D  Y  W  G  E  K  W  S  A  K  A   : D  H  K  L  H  G  G  A  C  S  W  T  G  F  L  W  N  C  V  P   : G  Q  M  P  *  N  R  R  N  R  G  N  K  K  G  L  A  G  Q  E  I  Q  E  S  G  I  A  D  Y  A  T  S  *  S  S  *  Y  C  F  T  E  A  L  L  L  F  D  H  R  K  G  *  A  L  S  K  F  G  S  R  I  C  T  *  N  S  L  P  C  V  K  T  L  Q  Q  S  K  P  T  D  A  Y  Y  I  C  Q  T  V  H  I  S   : D  I  *  S  F  G  L  H  T  W  D  R  S  L  P  Q  G  H  Q  T  S  E  F  T   : G  Q  P  P  H  T  S  A  *  A  L  *  F  W  E  C  K  S  P   : G  Q  R  R  A  K  H  F  I  Y  L  F  T  L  L  S  C  A  R  T  N  I  R  S  N  *  V  H  Q  C  N  *  H  L  V  C  G  L  C  P  S  *  T  A  S  W  T   : A  P  L  S  W  *  E  W  C  R  S  A  R  R  N  N  Q   : G  S  W  N  T  N  S  *  R  N  Q  V  Y  E  S  K  L  H  R  I  *  V  P  A  N  Q  S  S  P  L  A  Q   : D  F  S  Q  A  D  A  S  *  S  C  R  S  C  D  K  A  S  T  V  F  S  K  S  E  V  H  S   : V  G  S  S  W  S  R  F  L  *  *  A  P  *  P  *  C  S  S  S  *  W  S  S  I  A  I  S  L  Q  L  Q  T  S  R :   A  E  R  S  V  F  R  T  L  K  Q  T  V  T  R  T  C  *  K  A  V  S  L  T  W  S  L  V  C  K  N  L  F  I  F  C  E  L  D  P  I  Y  Y  H  C  S  E  N  *  E  N  L  L  T  S  P  L  V  Y  Y  I  P  L  L  R  Q  L  C  N  Q  L  I  P  P  V  L  Y  L  I  I  C  K  *  *  C  I  T  G  F  T  L  F  L  I  D  N  F  I  F  V  C  T  S  *  F  A  F  F  T  A  F  W  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106309" stop="106139"/>
                    <exon start="106050" stop="105958"/>
                    <exon start="103793" stop="103734"/>
                    <exon start="103633" stop="103361"/>
                    <exon start="102356" stop="102285"/>
                    <exon start="102212" stop="102156"/>
                    <exon start="101441" stop="101301"/>
                    <exon start="101202" stop="101152"/>
                    <exon start="101079" stop="100984"/>
                    <exon start="100878" stop="100795"/>
                    <exon start="100608" stop="100506"/>
                    <exon start="100401" stop="100319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITIYQYYKEVYLLFSDMASGSIMSSAAGKPITDVVLIDNLPKEINAMKINDDKEGKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPSIVSLKHCFFSTTEKDELYLNLVLEFVPETLYRVLRHYSKANQRMPIIYVKLYTYQIFRALAYIHGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTNAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVIRLLQYSPNLRCTALEALGHAFFDELRDPNARPPNGRPLPSLFNFRPQELKGASSELLNKLLPEHAKKQCPLLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107226" stop="107058"/>
                    <exon start="106339" stop="106284"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKNERRAALQKSIAKNLKTWPYAIFTSTLFLPRLGFCCFTHNFPSPMRAIHFTAAGFEKQTICHLSHNHLSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="111742" PGL_stop="108292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111742" e_stop="111445"/>
            <exon e_start="111350" e_stop="111212"/>
            <exon e_start="110721" e_stop="110529"/>
            <exon e_start="109492" e_stop="109382"/>
            <exon e_start="108953" e_stop="108891"/>
            <exon e_start="108801" e_stop="108671"/>
            <exon e_start="108591" e_stop="108292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.448" e_score="1.000"/>
          <exon-intron don_prob="0.537" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111742" e_stop="111445" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111350" e_stop="111212" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111211" i_stop="110722" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110721" e_stop="110529" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110528" i_stop="109493" i_length="1036"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109492" e_stop="109382" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.448">
            <gDNA_intron_boundary i_start="109381" i_stop="108954" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108953" e_stop="108891" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.537" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108801" e_stop="108671" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108670" i_stop="108592" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108591" e_stop="108292" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111742" stop="111445"/>
              <exon start="111350" stop="111212"/>
              <exon start="110721" stop="110529"/>
              <exon start="109492" stop="109382"/>
              <exon start="108953" stop="108891"/>
              <exon start="108801" stop="108671"/>
              <exon start="108591" stop="108292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAGGACAAAATTAGTAATATTTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC : CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAA : AACTGATGGCATTGGGCTGTCTGCACCACAAGTTGGAATGAATGTTCAACTAATGGTATTTAATGCAGCCGGTGAACGTGGAGAGGGGGAGGAGATTGTTCTCGTCAATCCACGTGTCAGTAGATATTCTAGGAGGATTATACCTTATGAAGAAGGTTGCTTATCTTTTCCAATGATACATGGTGATGTTAAG : AGACCAGAGTCAGTTAAGGTTGACGCACAGGACATTAATGGTACAAGGTTTGAGATAAGCTTGTCTGCTCTTCCAGCACGAGTCTTCCAACATGAATTTGATCACCTACAG : GGAGTTCTTTTCTTTGACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG : GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAG : TATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGCA</gDNA_template>
            <first_frame> T  K  D  K  I  S  N  I  C  I  C  R  G  E  I  V  R  F  V  V  W  Q  M  A  M  A  A  A  S  W  A  S  S  S  S  F  T  R  F  L  R  P  L  L  S  R  N  S  S  P  S  P  I  S  Y  S  L  H  R  Y  K  S  A  N  C  L  F  F  S  A  S  S  N  K  P  P  K  L  A  V  Y  A  Q  A  R  R  V  L  S  S  K  T  K  G  D  E  I  A  T   : P  A  D  L  S  F  V  V  P  L  K  I  V  E  Y  P  D  P  I  L  R  A  K  N  K  R  I  D  N  F  D  A  N  L  K  K  L  V  D  E  M  F  D  I  M  Y  K :   T  D  G  I  G  L  S  A  P  Q  V  G  M  N  V  Q  L  M  V  F  N  A  A  G  E  R  G  E  G  E  E  I  V  L  V  N  P  R  V  S  R  Y  S  R  R  I  I  P  Y  E  E  G  C  L  S  F  P  M  I  H  G  D  V  K  :  R  P  E  S  V  K  V  D  A  Q  D  I  N  G  T  R  F  E  I  S  L  S  A  L  P  A  R  V  F  Q  H  E  F  D  H  L  Q  :  G  V  L  F  F  D  K  M  T  D  E  V  L  D  T  I  R  E  K  L  V  :  A  L  E  K  K  Y  E  D  R  T  G  L  P  T  P  E  S  I  N  T  R  K  I  K  K  A  A  V  G  F  G  K  S  *  I  Y  W  D  L  *  N  L  L  S :   I  C  M  M  K  H  K  M  G  L  P  A  F  A  E  L  W  Y  M  P  L  I  *  T  L  V  L  C  E  T  S  Q  K  C  G  L  *  G  L  S  L  Y  *  Y  C  S  V  *  E  *  *  G  Y  H  R  N  L  Y  G  K  R  T  V  K  Y  I  *  S  N  I  E  H  Q  V  C  R  L  T  L  G  L  L  *  F  S  V  E  K  N  N  S  R  E  V  P  *  V  P  Q   </first_frame>
            <second_frame>  R  R  T  K  L  V  I  F  A  S  V  E  V  K  L  S  V  L  L  C  G  K  W  Q  W  L  P  Q  V  G  H  L  L  L  R  S  L  A  F  S  G  L  S  S  V  G  T  R  L  P  P  L  S  V  T  V  F  I  D  I  N  Q  L  T  V  Y  F  S  P  Q  A  V  I  N  L  Q  N  *  L  F  M  L  K  L  G  E  F  Y  L  P  K  P  K  E  M  K  *  Q  L  :  L  L  T  *  A  S  W  F  H  *  K  L  W  S  I  Q  T  R  F  *  E  R  R  I  R  G  L  T  I  L  T  L  I  *  R  S  *  L  M  K  C  S  I  L  C  T   : K  L  M  A  L  G  C  L  H  H  K  L  E  *  M  F  N  *  W  Y  L  M  Q  P  V  N  V  E  R  G  R  R  L  F  S  S  I  H  V  S  V  D  I  L  G  G  L  Y  L  M  K  K  V  A  Y  L  F  Q  *  Y  M  V  M  L  R :   D  Q  S  Q  L  R  L  T  H  R  T  L  M  V  Q  G  L  R  *  A  C  L  L  F  Q  H  E  S  S  N  M  N  L  I  T  Y  R :   E  F  F  S  L  T  K  *  L  T  K  S  W  T  P  F  V  K  N  *  W :   R  *  K  R  N  M  K  I  G  L  G  C  Q  P  L  K  A  *  I  H  E  K  *  R  R  L  L  L  D  L  A  N  H  E  F  T  G  I  Y  E  I  F  S   : V  F  V  *  *  S  T  K  W  D  C  Q  L  L  L  N  F  G  I  C  H  *  F  R  H  L  C  F  V  K  L  A  K  S  V  A  S  E  V  Y  P  C  T  D  T  A  L  F  R  N  D  R  V  T  T  E  I  C  M  E  K  E  L  L  S  T  F  D  Q  I  L  N  T  K  F  V  V  *  H  L  G  C  C  S  S  V  W  R  K  T  T  Q  E  K  F  H  K  F  P  S  </second_frame>
            <third_frame>   E  G  Q  N  *  *  Y  L  H  L  *  R  *  N  C  P  F  C  C  V  A  N  G  N  G  C  R  K  L  G  I  F  F  F  V  H  S  L  S  P  A  S  P  Q  S  E  L  V  S  L  P  Y  Q  L  Q  S  S  S  I  *  I  S  *  L  F  I  F  L  R  K  Q  *  *  T  S  K  I  S  C  L  C  S  S  *  A  S  F  I  F  Q  N  Q  R  R  *  N  S  N  S :   C  *  L  E  L  R  G  S  I  E  N  C  G  V  S  R  P  D  F  K  S  E  E  *  E  D  *  Q  F  *  R  *  F  E  E  V  S  *  *  N  V  R  Y  Y  V  Q  :  N  *  W  H  W  A  V  C  T  T  S  W  N  E  C  S  T  N  G  I  *  C  S  R  *  T  W  R  G  G  G  D  C  S  R  Q  S  T  C  Q  *  I  F  *  E  D  Y  T  L  *  R  R  L  L  I  F  S  N  D  T  W  *  C  *   : E  T  R  V  S  *  G  *  R  T  G  H  *  W  Y  K  V  *  D  K  L  V  C  S  S  S  T  S  L  P  T  *  I  *  S  P  T   : G  S  S  F  L  *  Q  N  D  *  R  S  P  G  H  H  S  *  K  I  S   : G  A  R  K  E  I  *  R  *  D  W  V  A  N  P  *  K  H  K  Y  T  K  N  K  E  G  C  C  W  I  W  Q  I  M  N  L  L  G  S  M  K  S  S  Q  :  Y  L  Y  D  E  A  Q  N  G  I  A  S  F  C  *  T  L  V  Y  A  I  N  L  D  T  C  A  L  *  N  *  P  K  V  W  P  L  R  F  I  L  V  L  I  L  L  C  L  G  M  I  G  L  P  Q  K  F  V  W  K  K  N  C  *  V  H  L  I  K  Y  *  T  P  S  L  S  F  N  T  W  V  V  V  V  Q  C  G  E  K  Q  L  K  R  S  S  I  S  S  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111742" stop="111445"/>
                    <exon start="111350" stop="111212"/>
                    <exon start="110721" stop="110529"/>
                    <exon start="109492" stop="109382"/>
                    <exon start="108953" stop="108891"/>
                    <exon start="108801" stop="108700"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKDKISNICICRGEIVRFVVWQMAMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108938" e_stop="108891"/>
            <exon e_start="108801" e_stop="108293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.537" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108938" e_stop="108891" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.537" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108890" i_stop="108802" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="108801" e_stop="108293" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108938" stop="108891"/>
              <exon start="108801" stop="108293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAAATGACTGACGAAGTCCTGGACACCATTCGTGAAAAATTAGTG : GCGCTAGAAAAGAAATATGAAGATAGGACTGGGTTGCCAACCCCTGAAAGCATAAATACACGAAAAATAAAGAAGGCTGCTGTTGGATTTGGCAAATCATGAATTTACTGGGATCTATGAAATCTTCTCAGGTTTCTGATGCCTTACCTTTATTTCATTTGCTTATTGTTTTACTGCATGTGCTTTACACTTGCTACTTGATGTATGCAGTATTTGTATGATGAAGCACAAAATGGGATTGCCAGCTTTTGCTGAACTTTGGTATATGCCATTAATTTAGACACTTGTGCTTTGTGAAACTAGCCAAAAGTGTGGCCTCTGAGGTTTATCCTTGTACTGATACTGCTCTGTTTAGGAATGATAGGGTTACCACAGAAATTTGTATGGAAAAAGAACTGTTAAGTACATTTGATCAAATATTGAACACCAAGTTTGTCGTTTAACACTTGGGTTGTTGTAGTTCAGTGTGGAGAAAAACAACTCAAGAGAAGTTCCATAAGTTCCCCAGC</gDNA_template>
            <first_frame> D  K  M  T  D  E  V  L  D  T  I  R  E  K  L  V  :  A  L  E  K  K  Y  E  D  R  T  G  L  P  T  P  E  S  I  N  T  R  K  I  K  K  A  A  V  G  F  G  K  S  *  I  Y  W  D  L  *  N  L  L  R  F  L  M  P  Y  L  Y  F  I  C  L  L  F  Y  C  M  C  F  T  L  A  T  *  C  M  Q  Y  L  Y  D  E  A  Q  N  G  I  A  S  F  C  *  T  L  V  Y  A  I  N  L  D  T  C  A  L  *  N  *  P  K  V  W  P  L  R  F  I  L  V  L  I  L  L  C  L  G  M  I  G  L  P  Q  K  F  V  W  K  K  N  C  *  V  H  L  I  K  Y  *  T  P  S  L  S  F  N  T  W  V  V  V  V  Q  C  G  E  K  Q  L  K  R  S  S  I  S  S  P   </first_frame>
            <second_frame>  T  K  *  L  T  K  S  W  T  P  F  V  K  N  *  W :   R  *  K  R  N  M  K  I  G  L  G  C  Q  P  L  K  A  *  I  H  E  K  *  R  R  L  L  L  D  L  A  N  H  E  F  T  G  I  Y  E  I  F  S  G  F  *  C  L  T  F  I  S  F  A  Y  C  F  T  A  C  A  L  H  L  L  L  D  V  C  S  I  C  M  M  K  H  K  M  G  L  P  A  F  A  E  L  W  Y  M  P  L  I  *  T  L  V  L  C  E  T  S  Q  K  C  G  L  *  G  L  S  L  Y  *  Y  C  S  V  *  E  *  *  G  Y  H  R  N  L  Y  G  K  R  T  V  K  Y  I  *  S  N  I  E  H  Q  V  C  R  L  T  L  G  L  L  *  F  S  V  E  K  N  N  S  R  E  V  P  *  V  P  Q  </second_frame>
            <third_frame>   Q  N  D  *  R  S  P  G  H  H  S  *  K  I  S   : G  A  R  K  E  I  *  R  *  D  W  V  A  N  P  *  K  H  K  Y  T  K  N  K  E  G  C  C  W  I  W  Q  I  M  N  L  L  G  S  M  K  S  S  Q  V  S  D  A  L  P  L  F  H  L  L  I  V  L  L  H  V  L  Y  T  C  Y  L  M  Y  A  V  F  V  *  *  S  T  K  W  D  C  Q  L  L  L  N  F  G  I  C  H  *  F  R  H  L  C  F  V  K  L  A  K  S  V  A  S  E  V  Y  P  C  T  D  T  A  L  F  R  N  D  R  V  T  T  E  I  C  M  E  K  E  L  L  S  T  F  D  Q  I  L  N  T  K  F  V  V  *  H  L  G  C  C  S  S  V  W  R  K  T  T  Q  E  K  F  H  K  F  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111719" e_stop="111445"/>
            <exon e_start="111350" e_stop="110850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111719" e_stop="111445" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111444" i_stop="111351" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="111350" e_stop="110850" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111719" stop="111445"/>
              <exon start="111350" stop="110850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCATCTGTAGAGGTGAAATTGTCCGTTTTGTTGTGTGGCAAATGGCAATGGCTGCCGCAAGTTGGGCATCTTCTTCTTCGTTCACTCGCTTTCTCCGGCCTCTCCTCAGTCGGAACTCGTCTCCCTCCCCTATCAGTTACAGTCTTCATCGATATAAATCAGCTAACTGTTTATTTTTCTCCGCAAGCAGTAATAAACCTCCAAAATTAGCTGTTTATGCTCAAGCTAGGCGAGTTTTATCTTCCAAAACCAAAGGAGATGAAATAGCAACTC : CTGCTGACTTGAGCTTCGTGGTTCCATTGAAAATTGTGGAGTATCCAGACCCGATTTTAAGAGCGAAGAATAAGAGGATTGACAATTTTGACGCTAATTTGAAGAAGTTAGTTGATGAAATGTTCGATATTATGTACAAGTGAGTCCATCCGTTTCTTACAATCCATAACTACTTGTCCTTTTGAGTTTTCATAACTTATTTTAATGCAAAAATCAGTTGTTCAATCAGTAAACTGGATAACTCAATCTATTGGAGCTTCGCAAAGCATGACTGATCCCAAACCTAGATATAGGAAGAGATTATTCTTGGTGGAGGTCTAATTATGTTGAAAATAAAACAAAAATAGTTATGGCGACACAAATTTAGAATAATGGAATCCGACTAGTTTGGAATTGAGGTGTAACTGACTGATTTATTGAATTAAGAATAGATGGATTTTGACACAAATTTAGAATAGTGGAATCCGACTAGTTGGGAATTGAGGTGTAACTGACTGATTT</gDNA_template>
            <first_frame> L  H  L  *  R  *  N  C  P  F  C  C  V  A  N  G  N  G  C  R  K  L  G  I  F  F  F  V  H  S  L  S  P  A  S  P  Q  S  E  L  V  S  L  P  Y  Q  L  Q  S  S  S  I  *  I  S  *  L  F  I  F  L  R  K  Q  *  *  T  S  K  I  S  C  L  C  S  S  *  A  S  F  I  F  Q  N  Q  R  R  *  N  S  N  S :   C  *  L  E  L  R  G  S  I  E  N  C  G  V  S  R  P  D  F  K  S  E  E  *  E  D  *  Q  F  *  R  *  F  E  E  V  S  *  *  N  V  R  Y  Y  V  Q  V  S  P  S  V  S  Y  N  P  *  L  L  V  L  L  S  F  H  N  L  F  *  C  K  N  Q  L  F  N  Q  *  T  G  *  L  N  L  L  E  L  R  K  A  *  L  I  P  N  L  D  I  G  R  D  Y  S  W  W  R  S  N  Y  V  E  N  K  T  K  I  V  M  A  T  Q  I  *  N  N  G  I  R  L  V  W  N  *  G  V  T  D  *  F  I  E  L  R  I  D  G  F  *  H  K  F  R  I  V  E  S  D  *  L  G  I  E  V  *  L  T  D   </first_frame>
            <second_frame>  C  I  C  R  G  E  I  V  R  F  V  V  W  Q  M  A  M  A  A  A  S  W  A  S  S  S  S  F  T  R  F  L  R  P  L  L  S  R  N  S  S  P  S  P  I  S  Y  S  L  H  R  Y  K  S  A  N  C  L  F  F  S  A  S  S  N  K  P  P  K  L  A  V  Y  A  Q  A  R  R  V  L  S  S  K  T  K  G  D  E  I  A  T   : P  A  D  L  S  F  V  V  P  L  K  I  V  E  Y  P  D  P  I  L  R  A  K  N  K  R  I  D  N  F  D  A  N  L  K  K  L  V  D  E  M  F  D  I  M  Y  K  *  V  H  P  F  L  T  I  H  N  Y  L  S  F  *  V  F  I  T  Y  F  N  A  K  I  S  C  S  I  S  K  L  D  N  S  I  Y  W  S  F  A  K  H  D  *  S  Q  T  *  I  *  E  E  I  I  L  G  G  G  L  I  M  L  K  I  K  Q  K  *  L  W  R  H  K  F  R  I  M  E  S  D  *  F  G  I  E  V  *  L  T  D  L  L  N  *  E  *  M  D  F  D  T  N  L  E  *  W  N  P  T  S  W  E  L  R  C  N  *  L  I  </second_frame>
            <third_frame>   A  S  V  E  V  K  L  S  V  L  L  C  G  K  W  Q  W  L  P  Q  V  G  H  L  L  L  R  S  L  A  F  S  G  L  S  S  V  G  T  R  L  P  P  L  S  V  T  V  F  I  D  I  N  Q  L  T  V  Y  F  S  P  Q  A  V  I  N  L  Q  N  *  L  F  M  L  K  L  G  E  F  Y  L  P  K  P  K  E  M  K  *  Q  L  :  L  L  T  *  A  S  W  F  H  *  K  L  W  S  I  Q  T  R  F  *  E  R  R  I  R  G  L  T  I  L  T  L  I  *  R  S  *  L  M  K  C  S  I  L  C  T  S  E  S  I  R  F  L  Q  S  I  T  T  C  P  F  E  F  S  *  L  I  L  M  Q  K  S  V  V  Q  S  V  N  W  I  T  Q  S  I  G  A  S  Q  S  M  T  D  P  K  P  R  Y  R  K  R  L  F  L  V  E  V  *  L  C  *  K  *  N  K  N  S  Y  G  D  T  N  L  E  *  W  N  P  T  S  L  E  L  R  C  N  *  L  I  Y  *  I  K  N  R  W  I  L  T  Q  I  *  N  S  G  I  R  L  V  G  N  *  G  V  T  D  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111718" stop="111445"/>
                    <exon start="111350" stop="111208"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CICRGEIVRFVVWQMAMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="121004" PGL_stop="121632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121004" e_stop="121188"/>
            <exon e_start="121263" e_stop="121632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="121004" e_stop="121188" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="121189" i_stop="121262" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121263" e_stop="121632" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121004" stop="121188"/>
              <exon start="121263" stop="121632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTCACATCCCATTCCTCTTCTCTTCTTTATTATATAAAAAAAATGGATAAAAGAACATGTGATTCTCAAGATGTTGAAGTTAGGAAAGGTCCTTGGACTATGGAAGAAGATTTGATTCTCATCAATTACATTGCTAATCATGGTGAAGGTGTTTGGAATTCCCTCGCTCGATCCGCTG : GTTTGAAGCGTACTGGAAAAAGTTGTAGACTTAGATGGCTTAATTATCTCCGACCTGATGTTCGGAGGGGAAATATTACACCGGAGGAACAATTGTTGATCATGGAACTACATGCCAAGTGGGGAAACCGGTGAGTTGATTTCTTTTTCTAGCTAGGGTTTTGATAATTAAATAAAATGATGAAATTATATAAAAGAAAATTTGGAAAATTGTAGAAATTTCTCCTTCATTTTTTTAAAAATGAAAAATAAAAAAAATCTCCCATGTGTTTGTATGTGTTGGATGGATAAAGAGGAATTGTCCCAAAATCTCTTAGAACTAGATTTGACATCATGAAAGAGAGTGATGGGGAATTTACAACGTGTTTAAT</gDNA_template>
            <first_frame> F  F  L  H  I  P  F  L  F  S  S  L  L  Y  K  K  N  G  *  K  N  M  *  F  S  R  C  *  S  *  E  R  S  L  D  Y  G  R  R  F  D  S  H  Q  L  H  C  *  S  W  *  R  C  L  E  F  P  R  S  I  R  W :   F  E  A  Y  W  K  K  L  *  T  *  M  A  *  L  S  P  T  *  C  S  E  G  K  Y  Y  T  G  G  T  I  V  D  H  G  T  T  C  Q  V  G  K  P  V  S  *  F  L  F  L  A  R  V  L  I  I  K  *  N  D  E  I  I  *  K  K  I  W  K  I  V  E  I  S  P  S  F  F  *  K  *  K  I  K  K  I  S  H  V  F  V  C  V  G  W  I  K  R  N  C  P  K  I  S  *  N  *  I  *  H  H  E  R  E  *  W  G  I  Y  N  V  F  N </first_frame>
            <second_frame>  F  F  F  T  S  H  S  S  S  L  L  Y  Y  I  K  K  M  D  K  R  T  C  D  S  Q  D  V  E  V  R  K  G  P  W  T  M  E  E  D  L  I  L  I  N  Y  I  A  N  H  G  E  G  V  W  N  S  L  A  R  S  A   : G  L  K  R  T  G  K  S  C  R  L  R  W  L  N  Y  L  R  P  D  V  R  R  G  N  I  T  P  E  E  Q  L  L  I  M  E  L  H  A  K  W  G  N  R  *  V  D  F  F  F  *  L  G  F  *  *  L  N  K  M  M  K  L  Y  K  R  K  F  G  K  L  *  K  F  L  L  H  F  F  K  N  E  K  *  K  K  S  P  M  C  L  Y  V  L  D  G  *  R  G  I  V  P  K  S  L  R  T  R  F  D  I  M  K  E  S  D  G  E  F  T  T  C  L   </second_frame>
            <third_frame>   F  S  S  H  P  I  P  L  L  F  F  I  I  *  K  K  W  I  K  E  H  V  I  L  K  M  L  K  L  G  K  V  L  G  L  W  K  K  I  *  F  S  S  I  T  L  L  I  M  V  K  V  F  G  I  P  S  L  D  P  L  :  V  *  S  V  L  E  K  V  V  D  L  D  G  L  I  I  S  D  L  M  F  G  G  E  I  L  H  R  R  N  N  C  *  S  W  N  Y  M  P  S  G  E  T  G  E  L  I  S  F  S  S  *  G  F  D  N  *  I  K  *  *  N  Y  I  K  E  N  L  E  N  C  R  N  F  S  F  I  F  L  K  M  K  N  K  K  N  L  P  C  V  C  M  C  W  M  D  K  E  E  L  S  Q  N  L  L  E  L  D  L  T  S  *  K  R  V  M  G  N  L  Q  R  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011A02.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121005" stop="121188"/>
                    <exon start="121263" stop="121396"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFTSHSSSLLYYIKKMDKRTCDSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="122113" PGL_stop="123377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122113" e_stop="123377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="122113" e_stop="123377" e_length="1265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122113" stop="123377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573604" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTTGATTTGACAGTCGAAAAATCTTTAAGCTTAATCATGTAAAGTATATTCTATCCATATTAATTAACATGCACAAATTACAAAATTAAAACATGTCACCCCTACATTAAATTTTGTCAATTTATTATTCTCTCTTCCTATAGATATAGGTAAAATAAAAAAATATAGGTCCTCATTCAGCCACCATAATTAGTAAAGCAAGGACAATTGTTCGACAGGAATTTGGCCTTCCATTATTACCATTGAATATGACATATGAATTTAAGTTTTTGAACTTTTGCTTTTTGAGTTTTTCAAATATGTTATAATATCTCCTTAATATATATGCACTTTACACATGTGTAAAAAACAAAAATTATTTATTTTTTCATATTATCAATATATATAAAAAAATTTAAAAAATAATTACGGTCTCGGTTCTATCAAATGAAAAATGATAAGAAGCAAAGGCTTGCAAATAGCTTTGATTGAAGTAGACGGATAACTTATTGTTTTGGTTCATCACAAAAAACAAGGGGTCCTTCTTGTACCTTAGATGTTTTTAGTGTATATCGAAAATAATATTTGAAATAGAAAAAAATTCGTAAAAATTATGTTTGATACGGAGAAAGTCATTTTCCAAGTAAGTATTAGAAAGTCATTTGCTGGTATGCATGTATTTAACTGTTAAAAGGGGATTTTTTTTCTTTCAAAAACCTCTCTTTATAATCCAATTTTTTTCATAATTTTAGGATCGAGAATATGAGGTAATTATCATTTGAGCAACTCTCGGTTATCCCTCTCTATATATAGCAAAACATTGAAACTGGTTAAAATCACTTCCCCTTGAGGATAGTTTAAGTTATGTATATATAAATTAAGTTTGATATGATAACTCACAAATAGAAAGAATAACCTTTTACAATCAATTAAATTGAGCTGATAATGTAAAATATCGGTATATATAACTGAAATATGCATGTATACAAGCAGTGGGACTTCAAATATCAGCCACAGAACATGTATACAACCTCGATTCTTTACCAAAAATTAAACGTGACTTAAAAGTTTAATTTCAATATAATCTGAAATAAGTAGTTTTCATTCATTTCATATTTAGTGTCTTAATTTCACTATACACAAAGGTTAAAGAATGAAAAGAAGATAATCTGTGATCTTAAATATAATTAATAATGTATATTTTAAATTTTATTATCTTAAATTTATCAGGAAAAATATTGAAATTGAAATACTTATTAAATATATATATAAAAAAACCACTC</gDNA_template>
            <first_frame> G  F  D  L  T  V  E  K  S  L  S  L  I  M  *  S  I  F  Y  P  Y  *  L  T  C  T  N  Y  K  I  K  T  C  H  P  Y  I  K  F  C  Q  F  I  I  L  S  S  Y  R  Y  R  *  N  K  K  I  *  V  L  I  Q  P  P  *  L  V  K  Q  G  Q  L  F  D  R  N  L  A  F  H  Y  Y  H  *  I  *  H  M  N  L  S  F  *  T  F  A  F  *  V  F  Q  I  C  Y  N  I  S  L  I  Y  M  H  F  T  H  V  *  K  T  K  I  I  Y  F  F  I  L  S  I  Y  I  K  K  F  K  K  *  L  R  S  R  F  Y  Q  M  K  N  D  K  K  Q  R  L  A  N  S  F  D  *  S  R  R  I  T  Y  C  F  G  S  S  Q  K  T  R  G  P  S  C  T  L  D  V  F  S  V  Y  R  K  *  Y  L  K  *  K  K  I  R  K  N  Y  V  *  Y  G  E  S  H  F  P  S  K  Y  *  K  V  I  C  W  Y  A  C  I  *  L  L  K  G  D  F  F  S  F  K  N  L  S  L  *  S  N  F  F  H  N  F  R  I  E  N  M  R  *  L  S  F  E  Q  L  S  V  I  P  L  Y  I  *  Q  N  I  E  T  G  *  N  H  F  P  L  R  I  V  *  V  M  Y  I  *  I  K  F  D  M  I  T  H  K  *  K  E  *  P  F  T  I  N  *  I  E  L  I  M  *  N  I  G  I  Y  N  *  N  M  H  V  Y  K  Q  W  D  F  K  Y  Q  P  Q  N  M  Y  T  T  S  I  L  Y  Q  K  L  N  V  T  *  K  F  N  F  N  I  I  *  N  K  *  F  S  F  I  S  Y  L  V  S  *  F  H  Y  T  Q  R  L  K  N  E  K  K  I  I  C  D  L  K  Y  N  *  *  C  I  F  *  I  L  L  S  *  I  Y  Q  E  K  Y  *  N  *  N  T  Y  *  I  Y  I  *  K  N  H   </first_frame>
            <second_frame>  A  L  I  *  Q  S  K  N  L  *  A  *  S  C  K  V  Y  S  I  H  I  N  *  H  A  Q  I  T  K  L  K  H  V  T  P  T  L  N  F  V  N  L  L  F  S  L  P  I  D  I  G  K  I  K  K  Y  R  S  S  F  S  H  H  N  *  *  S  K  D  N  C  S  T  G  I  W  P  S  I  I  T  I  E  Y  D  I  *  I  *  V  F  E  L  L  L  F  E  F  F  K  Y  V  I  I  S  P  *  Y  I  C  T  L  H  M  C  K  K  Q  K  L  F  I  F  S  Y  Y  Q  Y  I  *  K  N  L  K  N  N  Y  G  L  G  S  I  K  *  K  M  I  R  S  K  G  L  Q  I  A  L  I  E  V  D  G  *  L  I  V  L  V  H  H  K  K  Q  G  V  L  L  V  P  *  M  F  L  V  Y  I  E  N  N  I  *  N  R  K  K  F  V  K  I  M  F  D  T  E  K  V  I  F  Q  V  S  I  R  K  S  F  A  G  M  H  V  F  N  C  *  K  G  I  F  F  L  S  K  T  S  L  Y  N  P  I  F  F  I  I  L  G  S  R  I  *  G  N  Y  H  L  S  N  S  R  L  S  L  S  I  Y  S  K  T  L  K  L  V  K  I  T  S  P  *  G  *  F  K  L  C  I  Y  K  L  S  L  I  *  *  L  T  N  R  K  N  N  L  L  Q  S  I  K  L  S  *  *  C  K  I  S  V  Y  I  T  E  I  C  M  Y  T  S  S  G  T  S  N  I  S  H  R  T  C  I  Q  P  R  F  F  T  K  N  *  T  *  L  K  S  L  I  S  I  *  S  E  I  S  S  F  H  S  F  H  I  *  C  L  N  F  T  I  H  K  G  *  R  M  K  R  R  *  S  V  I  L  N  I  I  N  N  V  Y  F  K  F  Y  Y  L  K  F  I  R  K  N  I  E  I  E  I  L  I  K  Y  I  Y  K  K  T  T  </second_frame>
            <third_frame>   L  *  F  D  S  R  K  I  F  K  L  N  H  V  K  Y  I  L  S  I  L  I  N  M  H  K  L  Q  N  *  N  M  S  P  L  H  *  I  L  S  I  Y  Y  S  L  F  L  *  I  *  V  K  *  K  N  I  G  P  H  S  A  T  I  I  S  K  A  R  T  I  V  R  Q  E  F  G  L  P  L  L  P  L  N  M  T  Y  E  F  K  F  L  N  F  C  F  L  S  F  S  N  M  L  *  Y  L  L  N  I  Y  A  L  Y  T  C  V  K  N  K  N  Y  L  F  F  H  I  I  N  I  Y  K  K  I  *  K  I  I  T  V  S  V  L  S  N  E  K  *  *  E  A  K  A  C  K  *  L  *  L  K  *  T  D  N  L  L  F  W  F  I  T  K  N  K  G  S  F  L  Y  L  R  C  F  *  C  I  S  K  I  I  F  E  I  E  K  N  S  *  K  L  C  L  I  R  R  K  S  F  S  K  *  V  L  E  S  H  L  L  V  C  M  Y  L  T  V  K  R  G  F  F  F  F  Q  K  P  L  F  I  I  Q  F  F  S  *  F  *  D  R  E  Y  E  V  I  I  I  *  A  T  L  G  Y  P  S  L  Y  I  A  K  H  *  N  W  L  K  S  L  P  L  E  D  S  L  S  Y  V  Y  I  N  *  V  *  Y  D  N  S  Q  I  E  R  I  T  F  Y  N  Q  L  N  *  A  D  N  V  K  Y  R  Y  I  *  L  K  Y  A  C  I  Q  A  V  G  L  Q  I  S  A  T  E  H  V  Y  N  L  D  S  L  P  K  I  K  R  D  L  K  V  *  F  Q  Y  N  L  K  *  V  V  F  I  H  F  I  F  S  V  L  I  S  L  Y  T  K  V  K  E  *  K  E  D  N  L  *  S  *  I  *  L  I  M  Y  I  L  N  F  I  I  L  N  L  S  G  K  I  L  K  L  K  Y  L  L  N  I  Y  I  K  K  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 51 chains have been computed
$ 
$ memory statistics:
$ 122464 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 5566 bytes was the average size of a spliced alignment
$ 27216 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1600 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:07
-->
