<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:15:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g16210" ref_strand="+" ref_description="C2_At5g16210">
      <seq>tttcaattggtgtgtgatccatctggagtggtagtggaaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctggctggtgttttaggatctcctaggaagcatgaactactgacagagtacttgagaaatctcttgattcaaacttcaggacaagagagtcagacagtgaagcgcgagattttcttttctgttcgctttctttgcactttcgatgaacatcacaatatgatttttaacatcctctgggaaatggttgtgagttctgaaataacatgaatgcaacagctgccaatcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="97700" stop="99659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98000" g_stop="98137" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98224" g_stop="98438" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="353" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98554" g_stop="98671" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="471" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98758" g_stop="98890" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="604" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98986" g_stop="99181" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="800" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99182" i_stop="99259" i_length="78">
            <donor d_prob="0.431" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99260" g_stop="99360" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="900" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="C2_At5g16210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g16210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98000" e_stop="98137"/>
          <exon e_start="98224" e_stop="98438"/>
          <exon e_start="98554" e_stop="98671"/>
          <exon e_start="98758" e_stop="98890"/>
          <exon e_start="98986" e_stop="99181"/>
          <exon e_start="99260" e_stop="99360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTGGTTTGTGCCATTTTAATAAAGGCATTACAGTTCTGTGTCTGAACTCCTTAGATGATGGCTGACTATATTTTTCTGCAGCACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</genome_strand>
        <mrna_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG..............................................................................CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAAT-AACATGAATGCAACAGCTGCCAATCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="98000" PGL_stop="99360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98000" e_stop="98137"/>
            <exon e_start="98224" e_stop="98438"/>
            <exon e_start="98554" e_stop="98671"/>
            <exon e_start="98758" e_stop="98890"/>
            <exon e_start="98986" e_stop="99181"/>
            <exon e_start="99260" e_stop="99360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98000" e_stop="98137" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98224" e_stop="98438" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98554" e_stop="98671" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98758" e_stop="98890" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98986" e_stop="99181" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="99182" i_stop="99259" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="99260" e_stop="99360" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98000" stop="98137"/>
              <exon start="98224" stop="98438"/>
              <exon start="98554" stop="98671"/>
              <exon start="98758" stop="98890"/>
              <exon start="98986" stop="99181"/>
              <exon start="99260" stop="99360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g16210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG : CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</gDNA_template>
            <first_frame> F  Q  L  V  C  D  P  S  G  V  V  V  E  T  T  I  K  E  L  V  P  A  L  V  N  W  G  K  E  L  D  H  L  L  Q  V  L  L  S  H  A  L  G  S  A  Q  :  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  </first_frame>
            <second_frame>  F  N  W  C  V  I  H  L  E  W  *  W  K  Q  Q  S  R  N  L  F  Q  L  *  *  T  G  G  R  N  W  I  I  Y  Y  K  S  Y  Y  L  M  L  W  A  L  L  S :   V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K </second_frame>
            <third_frame>   S  I  G  V  *  S  I  W  S  G  S  G  N  N  N  Q  G  T  C  S  S  F  S  K  L  G  E  G  I  G  S  F  T  T  S  L  T  I  S  C  F  G  L  C  S   : A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98000" stop="98137"/>
                    <exon start="98224" stop="98438"/>
                    <exon start="98554" stop="98671"/>
                    <exon start="98758" stop="98890"/>
                    <exon start="98986" stop="99181"/>
                    <exon start="99260" stop="99359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLVCDPSGVVVETTIKELVPALVNWGKELDHLLQVLLSHALGSAQRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 53 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5688 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5688 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:15:37
-->
