<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:06:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g04270" ref_strand="+" ref_description="C2_At2g04270">
      <seq>gaaagtggtgatgcttgtgatattttagaagtccttgcagaaaattgtaatggtagtgtaactgagcatgggcttgaaactcattcagagaaatatccagaagaatccagtggaattgggtaccgagggcagaatccaactattgagcgtgctatgaatggtaagagaatttcacaaagagatgaaagcaagtgggtccaggtccgaaaaggcactaaaataattgtgcaagttgttaaagaaggattgggtacgaagggcccaacactgactgcttatccgaaattaaggagcagattctgggttttagttcctcgcggcaacacgataggtatttcaaagaagattgctggtgttgagcgcacacgtttaagggtcattgcaaaaactttacagcctcaaggatatggtcttacagtaaggacagttgcagctggtcattcactaaatgaattgcagaaggacttggaagggttgctttcaacttggaaaagtataattgagcatgcaaagtctgcagctcttgccgcagatgaaggtgttgatggagcagttcctgtcatgcttcaccaggcaatgggccaaacactttctgttgttcaagattattttagcgataaggtgaatagtttggtggttgattctccaaggacatatcatgaggttacaaactatcttcaagaaatggcacctaatctttgtgaaagagttgagttgcatggtacaagaactcccctgtttgatgaatacaacattgaggaagaaataaacaacattctcagcaaaagggttccccttgataatggaggttatttagtgatcgaacagacagaggctttagtctccatcgatgtaaatggtggacattgtgtgcttggtcaagggacttcacaagagatggctattctcaatgttaaccttgcagctgctagacagattgctagggaaataaggctgagagacattggtggcattattgtggtggatttcatagatatgttggatgattcaaataagagattggtctatgaggaggtcaagaaggctgttgagagagatcgatctacagttaaggtgtctgaattgtccagacatgggcttatggagattaccaggaaaagagttcgacctagtgtgacattcatgatcagtgaaccatgtatgtgctgccatggtacggggagagtggaagctttagcgactgcatactctaagattgaacgtgaaatttgccggttgctatccacaacggatctgaaggcagaccctgaaaaccccaagtcttggcccagatttattctcagggtagatcagtacatgtctaactatttaacttcaggaaagaggacaaggctagcaatcttgagtagttctctcaaagtttggcttcttctaaaggttgctagaggttttaccaaagggacctttgagctaaaacctttaacaggcgacaaggagtacaagggtgatgaacgtgaaacatctatttcagtgttgcgaccaacagagggtggatttcacccccctcggaaaaaagtcaccatcttccccatcaaaaagtggagtagtggaaagtgatgttacctccattaagaatcatctgtacaggtctcaaaaaacaatgcaaatccacatatggttagcataaatttattagccaattctttcttccctcttgagtttttctcgtcggcttgtaagaaatagctagttttatgaggaaatcaattttgcatagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0013N18.1" temp_strand="-" temp_description="C02HBa0013N18.1  htgs_phase:2 submitted_to_sgn_as:C02HBa0013N18 sequenced_by:kribb upload_account_name:korea len=117730 date=060222">
        <position start="8110" stop="2862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7810" g_stop="7508" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7507" i_stop="7417" i_length="91">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7416" g_stop="7099" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="621" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7098" i_stop="6967" i_length="132">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6966" g_stop="6925" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="663" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6924" i_stop="6293" i_length="632">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6292" g_stop="6168" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="788" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6167" i_stop="6038" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6037" g_stop="5890" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="936" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5889" i_stop="4901" i_length="989">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4900" g_stop="4828" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1009" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4827" i_stop="4309" i_length="519">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4308" g_stop="4196" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1122" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4195" i_stop="4105" i_length="91">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4104" g_stop="3985" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1123" r_stop="1242" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3984" i_stop="3746" i_length="239">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3745" g_stop="3590" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1243" r_stop="1398" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="3589" i_stop="3504" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3503" g_stop="3161" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1399" r_stop="1741" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1742" polyA_stop="1752"/>
      <MATCH_line gen_id="C02HBa0013N18.1" gen_strand="-" ref_id="C2_At2g04270" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1741</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0013N18.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g04270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7810" e_stop="7508"/>
          <exon e_start="7416" e_stop="7099"/>
          <exon e_start="6966" e_stop="6925"/>
          <exon e_start="6292" e_stop="6168"/>
          <exon e_start="6037" e_stop="5890"/>
          <exon e_start="4900" e_stop="4828"/>
          <exon e_start="4308" e_stop="4196"/>
          <exon e_start="4104" e_stop="3985"/>
          <exon e_start="3745" e_stop="3590"/>
          <exon e_start="3503" e_stop="3161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGGGTATTACATGTTTCATGATCATGTATTCTGTGTCTTACAGCTGAAAGTCCATTATTAGAAAACCCAATCTAATTGGTTCTCCTCTTCCCAGGTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAGGTCTGCTCATTCTCGGGTCATTACTTCATAATTTGTTCAGTTCTTTATTTTTTAGGCAACTTCTGTTCATGGGCTTTCTCAAATTAGCATGAAAACACAATTTTACTTTCTTACTCTAGCACTGATTTTCAGGTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAGGTATGGACTTAGCCAGTTATCAGTCAATGGAATGAAAAGATTTTTGACCTACAAGCATGATTGCATGTCTTTCTCTTGCTTTAATGTTCCTCTAGGTTGATTTTTCACATGGAAGCGGTTTTACAATAGTGAGTGGTTTTTGGTATGAAGATTTGCATATACTGGCTATGAATGAGATTATCTTGGATTAAATTAAACCCAAGTTAATGAAACATTTAAGAAGTAAAATTAGCTTGTTTAAGAATAGCGCCCAGTGTGTGCAATGATGAGTAGCACTGCAATTAGTATCTCAGTACATTACGTTCTTATGAATAGAACTGATGACATTGATTTTCGTCTTTAAACTATAAGGGCATTTGTGCTTTAAGTTACAAATATTTTCCTTTTTGACTTTAAGTGTCCTGATTCCTTTCGCTTCACACAGTTCAGCATATAGTCGCGGCATAGTGTTCCACAACTTTTGTCGTCTTGTTGTGTCCTCTTTTATTCCAACTCTGCAAAAGTTATTTTGGAGATCTGTCATACACCAAATAGTCGCGGTTTGTGTTCCACTACCTGTGGGCTAAAATTGGTTGAGGAATTTTTTTAAAATTATGGTGTACCTTAATATAGATATATTGGACTCTGTTCAGGTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAGGTGGAGATCACTTTGTTTCTTTCTTTTAGCTTTATGTCTTTTATGACATGTATTTTAACTTCTCGTGAGTCAAAACGTTTCATGTTTCATTGATATTCCTCCTTAATCCTTTGATTTATAAAATTTGCAGGGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAGGTATGTAGACCTGCATCTATTTTGATTACACATTGTATTCCAAGAGCATAGTCTTTCTACACCTGGGAAAGTTGGTTATCAGAAAACAAACTAGGATATGCTTAGAAGATCCTTTTTAATGAATTAGAAGATGCTTAGCGTTTGATGGAAATACTTCAATCCAACACTAAAATATGTCTCTTGACAAGCTACACTGCTTCTCTTTTTTCCTGTGGTAGACAAGGCCTCATTTGTAGCCTAGTAGTATCTTGTCAGATCCCAGAACAGAAGAATATTCTGTTGATGCACCTTCTATGGAGAATTAATTCTTTAAAAAAAAGAAACTACACAGGGTATCATGTCCATGTTGCCGTTTTAATCTGCTATTGGTTTGGACATAGCATGTCTGAATTACGTGCTAAACCTCTATTTTTTTTTCTTGGAGGGGATAACCAAGACATCCCTGAGCGTATGTGGATAATGTGCCCGCTCTCTACCTTTCTTCAGTTAAATACCACGCTTTTGTCATAGGAAGGTTCGATCTCTTCACGTGTCTAACCCACACATCACACATTGTGCTCTTACCACTAGACAAAACCAACGGGGATAATCTGTGGTTGCTTTTATGCACCTCTATTTAAGTCGCGTTAATTTGATCCAATTTAGCAGTCAGCCTGGGCTGCAGAATTACACACATTTTTAAAGAAGGAAGGAAGCAGAAACCAATCCAAATAAGCAAGTATCCATCATTCGAATTCAAAGAAATACTGCACTTCTAGTTTCATTGGGTGTTTCTGGTTAGATTTGAACCTTTTATCTGAGAAACCGAGCTAGTTACTGAAATGTACGACAACACAGGATTACATTGGATCTTTTTTGTTGATAAAGACAACATAGTATTGCATTGGTTTTCTTTCTATATGTTAAGTTTATTATTTGCGACAGATTCCCATTTTTTATTTTATCTGATAATTGTTGTCATTTATGTATATACTGAAAATTATTCTCAGATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATTGTAAGTAAACAACCCTCTCTCCGCCCTTTCCCCTCCTCTCTATGTGTGTGTATGTGTCACAGGCGGATCCAAGACTAAATTTGATGAGTTCAACCTTTAAATTCTTAGCACAGAACTGAATGTTCTTCTAAAATTATGATGTGTGTGGTCTTTATGTGGTATTGATGCACAATATTTTGTTTAAATGGGATTACTACTGAAAATAAGAAAGAAAAAAGAAGAGACATAAATTTATATTATGGTCTTCTATGTAAATCTAAAATTGAAGTTAACCTTGTCGAATGCTTGGTAACTAAACGACATTATTTGTAGTACATAACACCTACTGTTCATCATCTAAAACCGGCATGTAATCAGACTGAAAGTTTCGTAATCAGTGCCATCCTACTATGCCTCTCTCTAAACTATATTAGACACTAAGCTCATGCCATATGATTTATAAGATGATAACTTGAAATCGTCAATACATTTTGAAGATGTAGTCCTCTTCTAAGTTTTTTCTTTTATTTTGTTTTCCAGCAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCAACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGAGTATGTTATTTGGTGCTGAATTTCTGTCATAACTACACTAGTGGAAATATCTAATTAATCATGGTTGGTCGTTTCATCTTATACCTGACAGGTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTAGTAAGTAAACTAACGGCATCTTGAGATGCCTTTGCAAGGTTATCTTCTTGGATTCCTTACTATCTGTTAAGCTGCAAAAAGGTTGATCCAAAATCTTGTCTTTGGCAAGCTAATCCATTCTTACCACTTGGTCTCCATTTTTCCTCCTCTTCTTTTGGATCTTTCTGAATATAGTTCAACATGATTTGACATAATGACCGCTTTCCCCAAAACTGATTGTTGTTTCTTGTGTTGATCAGTCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAGGTATGCTTAGTCATTTTATCCATTCTCATAACAAAATATCACTTTTATTTCTGTATTTGCTGATTTTGTAAGCTGTGATTAACCAGGTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGCAT</genome_strand>
        <mrna_strand>GAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGG...........................................................................................GTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAG....................................................................................................................................GTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAG..................................................................................................................................GGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCTACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGA...........................................................................................GTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTA...............................................................................................................................................................................................................................................TCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAG......................................................................................GTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g38320" ref_strand="+" ref_description="C2_At2g38320">
      <seq>agaaaaatgaatggaagaccagtacttttcggctctagtttaaagaacaagggaatgggtattcagctaagttttcagttgctggttgtgattatcactgcggttttagtccttacggctttgtcgatgtccagagggattagtcaatctccaaagttagtcgagaagcagacccagataagctcgttatctagctgtaatttctattctggtaaatgggtatttgataatcaatctcgccctctttataacgggacaaattgttcgttcatggatgatggaatggcttgtcagaagtttgggagaaagaatcttaactatctctactggaaatggcaacccaatgattgtgaccttccaagatttaatgctacggcgatgttggagaagttgaggaacaaaagggttgtttatgtgggagattcactcaataggaatcaatgggtttcaatggtctgcatattagaatcagaaattcctagtcatctcaaatatgtcaactataatggctctttggtcacctttaaagctattgaatacaatgctactattgatttctactgggcaccattgttagttgaatcaaattgcgacgatccatcatatcatcgtgtggacgagcgcatagtgagaatcgattcgatagaaaagcatgccagaatttggaaagatgctgatgtgcttgtttttaattcatatctatggtggagattgaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0013N18.1" temp_strand="-" temp_description="C02HBa0013N18.1  htgs_phase:2 submitted_to_sgn_as:C02HBa0013N18 sequenced_by:kribb upload_account_name:korea len=117730 date=060222">
        <position start="94253" stop="92747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93953" g_stop="93592" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93591" i_stop="93511" i_length="81">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93510" g_stop="93339" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="534" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93338" i_stop="93236" i_length="103">
            <donor d_prob="0.696" d_score="0.98"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93235" g_stop="93047" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="723" r_length="189" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0013N18.1" gen_strand="-" ref_id="C2_At2g38320" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0013N18.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g38320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93953" e_stop="93592"/>
          <exon e_start="93510" e_stop="93339"/>
          <exon e_start="93235" e_stop="93047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGTGTATTCAGCTAAGTTTTCAGTTGCTGGTAGTGACTATCACTGCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAGGTAGAGTATTATTCAGTTTTTCTTCAATTTTATCCTACTTTTTGTTCTGGGTATTTGATTATAGTTGTTGATTTTGCGAAGATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATTGTGAGTTTCGAAAATTGCTTCTCCAATACGCTACCTTGTTCTTCTCCTTGAACTTTGCTTGCAGTTCTAATTAGTTTAATTTTGTTTTTTTACGTTAATGAAGGAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGAAGAACGCATAGTGAGAATCGATTCGATAGAAAAACATGCCAGAATTTGGAATGATGCTGATGTGCTAGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</genome_strand>
        <mrna_strand>AGAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGGGTATTCAGCTAAGTTTTCAGTTGCTGGTTGTGATTATCACTGCGGTTTTAGTCCTTACGGCTTTGTCGATGTCCAGAGGGATTAGTCAATCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTTTATAACGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTAACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCAAG.................................................................................ATTTAATGCTACGGCGATGTTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAGTCATCTCAAATATGTCAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT.......................................................................................................GAATACAATGCTACTATTGATTTCTACTGGGCACCATTGTTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGACGAGCGCATAGTGAGAATCGATTCGATAGAAAAGCATGCCAGAATTTGGAAAGATGCTGATGTGCTTGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLET-1-A5" ref_strand="+" ref_description="cLET-1-A5">
      <seq>aaagatcaaaatcatataactttagtatttctgaaaataaacttccatttttctaaatgggcatacagaatccccttattgattacatccaaatataacttatagacttcacaacgtaatacataaacataatttgcattctctctctatatataaataaagacgcttagccctgggcgaagttcttttgattgttacagtccaaattttcaccagtaggaacattcaacataccacaatacctcctgtaaaatccaattcgactttccgctgcagtattcggacccatcccacattcaaattgaccgttaatgatgttggtaatgacaccgtaccctggaactctattagctgctgtatctttaggggatggcgtccattgtccaatgataacgttgtggcatgatggtttattatcctgttctgtcatccagaaccatattgctgttttgaatgatattataggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0013N18-nQZFG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0013N18.1" temp_strand="+" temp_description="C02HBa0013N18.1  htgs_phase:2 submitted_to_sgn_as:C02HBa0013N18 sequenced_by:kribb upload_account_name:korea len=117730 date=060222">
        <position start="103283" stop="104352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103583" g_stop="104052" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0013N18.1" gen_strand="+" ref_id="cLET-1-A5" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0013N18.1" gen_strand="+"/>
        <rDNA rDNA_id="cLET-1-A5" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103583" e_stop="104052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCAAAATCATATAACTTTAGTATTTCTGAAAATAAACTTCCATTTTTCTAAATGGGCATACAGAATCCCCTTATTGATTACATCCAAATATAACTTATAGACTTCACAACGTAATACATAAACATAATTTGCATTCTCTCTCTATATATAAATAAAGACGCTTAGCCCTGGGCGAAGTTCTTTTGATTGTTACAGTCCAAATTTTCACCAGTAGGAACATTCAACATACCACAATACCTCCTGTAAAATCCAATTCGACTTTCCGCTGCAGTATTCGGACCCATCCCACATTCAAATTGACCGTTAATGATGTTGGTAATGACACCGTACCCTGGAACTCTATTAGCTGCTGTATCTTTAGGGGATGGCGTCCATTGTCCAATGATAACGTTGTGGCATGATGGTTTATTATCCTGTTCTGTCATCCAGAACCATATTGCTGTTTTGAATGATATTATAGGATCT</genome_strand>
        <mrna_strand>AAAGATCAAAATCATATAACTTTAGTATTTCTGAAAATAAACTTCCATTTTTCTAAATGGGCATACAGAATCCCCTTATTGATTACATCCAAATATAACTTATAGACTTCACAACGTAATACATAAACATAATTTGCATTCTCTCTCTATATATAAATAAAGACGCTTAGCCCTGGGCGAAGTTCTTTTGATTGTTACAGTCCAAATTTTCACCAGTAGGAACATTCAACATACCACAATACCTCCTGTAAAATCCAATTCGACTTTCCGCTGCAGTATTCGGACCCATCCCACATTCAAATTGACCGTTAATGATGTTGGTAATGACACCGTACCCTGGAACTCTATTAGCTGCTGTATCTTTAGGGGATGGCGTCCATTGTCCAATGATAACGTTGTGGCATGATGGTTTATTATCCTGTTCTGTCATCCAGAACCATATTGCTGTTTTGAATGATATTATAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7810" PGL_stop="3161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7810" e_stop="7508"/>
            <exon e_start="7416" e_stop="7099"/>
            <exon e_start="6966" e_stop="6925"/>
            <exon e_start="6292" e_stop="6168"/>
            <exon e_start="6037" e_stop="5890"/>
            <exon e_start="4900" e_stop="4828"/>
            <exon e_start="4308" e_stop="4196"/>
            <exon e_start="4104" e_stop="3985"/>
            <exon e_start="3745" e_stop="3590"/>
            <exon e_start="3503" e_stop="3161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.905" e_score="0.991"/>
          <exon-intron don_prob="0.550" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7810" e_stop="7508" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.915">
            <gDNA_intron_boundary i_start="7507" i_stop="7417" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7416" e_stop="7099" e_length="318"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.906">
            <gDNA_intron_boundary i_start="7098" i_stop="6967" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6966" e_stop="6925" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.862" acc_prob="0.987">
            <gDNA_intron_boundary i_start="6924" i_stop="6293" i_length="632"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6292" e_stop="6168" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6167" i_stop="6038" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6037" e_stop="5890" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5889" i_stop="4901" i_length="989"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4900" e_stop="4828" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4827" i_stop="4309" i_length="519"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="4308" e_stop="4196" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.848" acc_prob="0.905">
            <gDNA_intron_boundary i_start="4195" i_stop="4105" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4104" e_stop="3985" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.550" acc_prob="0.935">
            <gDNA_intron_boundary i_start="3984" i_stop="3746" i_length="239"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3745" e_stop="3590" e_length="156"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3589" i_stop="3504" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="3503" e_stop="3161" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7810" stop="7508"/>
              <exon start="7416" stop="7099"/>
              <exon start="6966" stop="6925"/>
              <exon start="6292" stop="6168"/>
              <exon start="6037" stop="5890"/>
              <exon start="4900" stop="4828"/>
              <exon start="4308" stop="4196"/>
              <exon start="4104" stop="3985"/>
              <exon start="3745" stop="3590"/>
              <exon start="3503" stop="3161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g04270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGG : GTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAG : GTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAG : GTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAG : GGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAG : ATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATT : CAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCAACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGA : GTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTA : TCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAG : GTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGCAT</gDNA_template>
            <first_frame> E  S  G  D  A  C  D  I  L  E  V  L  A  E  N  C  N  G  S  V  T  E  H  G  L  E  T  H  S  E  K  Y  P  E  E  S  S  G  I  G  Y  R  G  Q  N  P  T  I  E  R  A  M  N  G  K  R  I  S  Q  R  D  E  S  K  W  V  Q  V  R  K  G  T  K  I  I  V  Q  V  V  K  E  G  L  G  T  K  G  P  T  L  T  A  Y  P  K  L  R  S  R  F  W  :  V  L  V  P  R  G  N  T  I  G  I  S  K  K  I  A  G  V  E  R  T  R  L  R  V  I  A  K  T  L  Q  P  Q  G  Y  G  L  T  V  R  T  V  A  A  G  H  S  L  N  E  L  Q  K  D  L  E  G  L  L  S  T  W  K  S  I  I  E  H  A  K  S  A  A  L  A  A  D  E  G  V  D  G  A  V  P  V  M  L  H  Q  A  M  G  Q  T  L  S  V  V  Q  D  Y  F  S  D  K  :  V  N  S  L  V  V  D  S  P  R  T  Y  H  E  :  V  T  N  Y  L  Q  E  M  A  P  N  L  C  E  R  V  E  L  H  G  T  R  T  P  L  F  D  E  Y  N  I  E  E  E  I  N  N  I  L  S  K  R :   V  P  L  D  N  G  G  Y  L  V  I  E  Q  T  E  A  L  V  S  I  D  V  N  G  G  H  C  V  L  G  Q  G  T  S  Q  E  M  A  I  L  N  V  N  L  A  A  A  R  Q  :  I  A  R  E  I  R  L  R  D  I  G  G  I  I  V  V  D  F  I  D  M  L  D  D   : S  N  K  R  L  V  Y  E  E  V  K  K  A  V  E  R  D  R  S  T  V  K  V  S  E  L  S  R  H  G  L  M  E  I  T  R  K  R  :  V  R  P  S  V  T  F  M  I  S  E  P  C  M  C  C  H  G  T  G  R  V  E  A  L  A  T  A  Y  S  K  I  E  R  E  I  C  R  L  L  :  S  T  T  D  L  K  A  D  P  E  N  P  K  S  W  P  R  F  I  L  R  V  D  Q  Y  M  S  N  Y  L  T  S  G  K  R  T  R  L  A  I  L  S  S  S  L  K  V  W  L  L  L  K  :  V  A  R  G  F  T  K  G  T  F  E  L  K  P  L  T  G  D  K  E  Y  K  G  D  E  R  E  T  S  I  S  V  L  R  P  T  E  G  G  F  H  P  P  R  K  K  V  T  I  F  P  I  K  K  W  S  S  G  K  *  C  Y  L  H  *  E  S  S  V  Q  V  S  K  N  N  A  N  P  H  M  V  S  I  N  L  L  A  N  S  F  F  P  L  E  F  F  S  S  A  C  K  K  *  L  V  L  *  G  N  Q  F  C  I  A  </first_frame>
            <second_frame>  K  V  V  M  L  V  I  F  *  K  S  L  Q  K  I  V  M  V  V  *  L  S  M  G  L  K  L  I  Q  R  N  I  Q  K  N  P  V  E  L  G  T  E  G  R  I  Q  L  L  S  V  L  *  M  V  R  E  F  H  K  E  M  K  A  S  G  S  R  S  E  K  A  L  K  *  L  C  K  L  L  K  K  D  W  V  R  R  A  Q  H  *  L  L  I  R  N  *  G  A  D  S  G :   F  *  F  L  A  A  T  R  *  V  F  Q  R  R  L  L  V  L  S  A  H  V  *  G  S  L  Q  K  L  Y  S  L  K  D  M  V  L  Q  *  G  Q  L  Q  L  V  I  H  *  M  N  C  R  R  T  W  K  G  C  F  Q  L  G  K  V  *  L  S  M  Q  S  L  Q  L  L  P  Q  M  K  V  L  M  E  Q  F  L  S  C  F  T  R  Q  W  A  K  H  F  L  L  F  K  I  I  L  A  I  R :   *  I  V  W  W  L  I  L  Q  G  H  I  M  R :   L  Q  T  I  F  K  K  W  H  L  I  F  V  K  E  L  S  C  M  V  Q  E  L  P  C  L  M  N  T  T  L  R  K  K  *  T  T  F  S  A  K   : G  F  P  L  I  M  E  V  I  *  *  S  N  R  Q  R  L  *  S  P  S  M  *  M  V  D  I  V  C  L  V  K  G  L  H  K  R  W  L  F  S  M  L  T  L  Q  L  L  D  R :   L  L  G  K  *  G  *  E  T  L  V  A  L  L  W  W  I  S  *  I  C  W  M  I  :  Q  I  R  D  W  S  M  R  R  S  R  R  L  L  R  E  I  D  Q  Q  L  R  C  L  N  C  P  D  M  G  L  W  R  L  P  G  K  E :   F  D  L  V  *  H  S  *  S  V  N  H  V  C  A  A  M  V  R  G  E  W  K  L  *  R  L  H  T  L  R  L  N  V  K  F  A  G  C  Y :   P  Q  R  I  *  R  Q  T  L  K  T  P  S  L  G  P  D  L  F  S  G  *  I  S  T  C  L  T  I  *  L  Q  E  R  G  Q  G  *  Q  S  *  V  V  L  S  K  F  G  F  F  *  R :   L  L  E  V  L  P  K  G  P  L  S  *  N  L  *  Q  A  T  R  S  T  R  V  M  N  V  K  H  L  F  Q  C  C  D  Q  Q  R  V  D  F  T  P  L  G  K  K  S  P  S  S  P  S  K  S  G  V  V  E  S  D  V  T  S  I  K  N  H  L  Y  R  S  Q  K  T  M  Q  I  H  I  W  L  A  *  I  Y  *  P  I  L  S  S  L  L  S  F  S  R  R  L  V  R  N  S  *  F  Y  E  E  I  N  F  A  *  H </second_frame>
            <third_frame>   K  W  *  C  L  *  Y  F  R  S  P  C  R  K  L  *  W  *  C  N  *  A  W  A  *  N  S  F  R  E  I  S  R  R  I  Q  W  N  W  V  P  R  A  E  S  N  Y  *  A  C  Y  E  W  *  E  N  F  T  K  R  *  K  Q  V  G  P  G  P  K  R  H  *  N  N  C  A  S  C  *  R  R  I  G  Y  E  G  P  N  T  D  C  L  S  E  I  K  E  Q  I  L   : G  F  S  S  S  R  Q  H  D  R  Y  F  K  E  D  C  W  C  *  A  H  T  F  K  G  H  C  K  N  F  T  A  S  R  I  W  S  Y  S  K  D  S  C  S  W  S  F  T  K  *  I  A  E  G  L  G  R  V  A  F  N  L  E  K  Y  N  *  A  C  K  V  C  S  S  C  R  R  *  R  C  *  W  S  S  S  C  H  A  S  P  G  N  G  P  N  T  F  C  C  S  R  L  F  *  R  *   : G  E  *  F  G  G  *  F  S  K  D  I  S  *   : G  Y  K  L  S  S  R  N  G  T  *  S  L  *  K  S  *  V  A  W  Y  K  N  S  P  V  *  *  I  Q  H  *  G  R  N  K  Q  H  S  Q  Q  K  :  G  S  P  *  *  W  R  L  F  S  D  R  T  D  R  G  F  S  L  H  R  C  K  W  W  T  L  C  A  W  S  R  D  F  T  R  D  G  Y  S  Q  C  *  P  C  S  C  *  T   : D  C  *  G  N  K  A  E  R  H  W  W  H  Y  C  G  G  F  H  R  Y  V  G  *  F :   K  *  E  I  G  L  *  G  G  Q  E  G  C  *  E  R  S  I  N  S  *  G  V  *  I  V  Q  T  W  A  Y  G  D  Y  Q  E  K   : S  S  T  *  C  D  I  H  D  Q  *  T  M  Y  V  L  P  W  Y  G  E  S  G  S  F  S  D  C  I  L  *  D  *  T  *  N  L  P  V  A   : I  H  N  G  S  E  G  R  P  *  K  P  Q  V  L  A  Q  I  Y  S  Q  G  R  S  V  H  V  *  L  F  N  F  R  K  E  D  K  A  S  N  L  E  *  F  S  Q  S  L  A  S  S  K   : G  C  *  R  F  Y  Q  R  D  L  *  A  K  T  F  N  R  R  Q  G  V  Q  G  *  *  T  *  N  I  Y  F  S  V  A  T  N  R  G  W  I  S  P  P  S  E  K  S  H  H  L  P  H  Q  K  V  E  *  W  K  V  M  L  P  P  L  R  I  I  C  T  G  L  K  K  Q  C  K  S  T  Y  G  *  H  K  F  I  S  Q  F  F  L  P  S  *  V  F  L  V  G  L  *  E  I  A  S  F  M  R  K  S  I  L  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0013N18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7810" stop="7508"/>
                    <exon start="7416" stop="7099"/>
                    <exon start="6966" stop="6925"/>
                    <exon start="6292" stop="6168"/>
                    <exon start="6037" stop="5890"/>
                    <exon start="4900" stop="4828"/>
                    <exon start="4308" stop="4196"/>
                    <exon start="4104" stop="3985"/>
                    <exon start="3745" stop="3590"/>
                    <exon start="3503" stop="3324"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESGDACDILEVLAENCNGSVTEHGLETHSEKYPEESSGIGYRGQNPTIERAMNGKRISQRDESKWVQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLVPRGNTIGISKKIAGVERTRLRVIAKTLQPQGYGLTVRTVAAGHSLNELQKDLEGLLSTWKSIIEHAKSAALAADEGVDGAVPVMLHQAMGQTLSVVQDYFSDKVNSLVVDSPRTYHEVTNYLQEMAPNLCERVELHGTRTPLFDEYNIEEEINNILSKRVPLDNGGYLVIEQTEALVSIDVNGGHCVLGQGTSQEMAILNVNLAAARQIAREIRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSTVKVSELSRHGLMEITRKRVRPSVTFMISEPCMCCHGTGRVEALATAYSKIEREICRLLSTTDLKADPENPKSWPRFILRVDQYMSNYLTSGKRTRLAILSSSLKVWLLLKVARGFTKGTFELKPLTGDKEYKGDERETSISVLRPTEGGFHPPRKKVTIFPIKKWSSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="93953" PGL_stop="93047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93953" e_stop="93592"/>
            <exon e_start="93510" e_stop="93339"/>
            <exon e_start="93235" e_stop="93047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="0.961"/>
          <exon-intron don_prob="0.696" acc_prob="0.762" e_score="0.977"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="93953" e_stop="93592" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="93591" i_stop="93511" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="93510" e_stop="93339" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.696" acc_prob="0.762">
            <gDNA_intron_boundary i_start="93338" i_stop="93236" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="93235" e_stop="93047" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93953" stop="93592"/>
              <exon start="93510" stop="93339"/>
              <exon start="93235" stop="93047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g38320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGTGTATTCAGCTAAGTTTTCAGTTGCTGGTAGTGACTATCACTGCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAG : ATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT : GAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGAAGAACGCATAGTGAGAATCGATTCGATAGAAAAACATGCCAGAATTTGGAATGATGCTGATGTGCTAGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</gDNA_template>
            <first_frame> K  K  M  N  G  R  P  V  L  F  G  S  S  L  K  N  K  G  M  C  I  Q  L  S  F  Q  L  L  V  V  T  I  T  A  V  L  V  L  T  V  L  S  M  S  R  G  I  G  Q  A  P  K  L  V  E  K  Q  T  Q  I  S  S  L  S  S  C  N  F  Y  S  G  K  W  V  F  D  N  Q  S  R  P  L  Y  N  G  T  N  C  S  F  M  D  D  G  M  A  C  Q  K  F  G  R  K  N  L  D  Y  L  Y  W  K  W  Q  P  N  D  C  D  L  P  R :   F  N  A  T  A  M  L  E  K  L  R  N  K  R  V  V  Y  V  G  D  S  L  N  R  N  Q  W  V  S  M  V  C  I  L  E  S  E  I  P  N  H  L  K  Y  V  N  Y  N  G  S  L  V  T  F  K  A  I  :  E  Y  N  A  T  I  D  F  Y  W  A  P  L  L  V  E  S  N  C  D  D  P  S  Y  H  R  V  E  E  R  I  V  R  I  D  S  I  E  K  H  A  R  I  W  N  D  A  D  V  L  V  F  N  S  Y  L  W  W  R  L  N  L  K </first_frame>
            <second_frame>  K  K  *  M  E  D  Q  Y  F  S  A  L  V  *  R  T  R  E  C  V  F  S  *  V  F  S  C  W  *  *  L  S  L  Q  F  *  F  L  R  F  C  R  C  P  E  V  L  V  K  L  Q  S  *  S  R  S  R  P  R  *  A  R  Y  L  A  V  I  S  I  L  V  N  G  Y  L  I  I  N  L  A  L  C  I  M  G  Q  I  V  R  S  W  M  M  E  W  L  V  R  S  L  G  E  R  I  L  T  I  S  T  G  N  G  N  P  M  I  V  T  F  L   : D  L  M  L  R  L  C  W  R  S  *  G  T  K  G  L  F  M  W  E  I  H  S  I  G  I  N  G  F  Q  W  S  A  Y  *  N  Q  K  F  L  I  I  S  N  M  L  T  I  M  A  L  W  S  P  L  K  L  L :   S  T  M  L  L  L  I  S  T  G  H  H  Y  *  L  N  Q  I  A  T  I  H  H  I  I  V  W  K  N  A  *  *  E  S  I  R  *  K  N  M  P  E  F  G  M  M  L  M  C  *  F  L  I  H  I  Y  G  G  D  *  I  *   </second_frame>
            <third_frame>   K  N  E  W  K  T  S  T  F  R  L  *  F  K  E  Q  G  N  V  Y  S  A  K  F  S  V  A  G  S  D  Y  H  C  S  F  S  S  Y  G  F  V  D  V  Q  R  Y  W  S  S  S  K  V  S  R  E  A  D  P  D  K  L  V  I  *  L  *  F  L  F  W  *  M  G  I  *  *  S  I  S  P  S  V  *  W  D  K  L  F  V  H  G  *  W  N  G  L  S  E  V  W  E  K  E  S  *  L  S  L  L  E  M  A  T  Q  *  L  *  P  S  *  :  I  *  C  Y  G  Y  A  G  E  V  E  E  Q  K  G  C  L  C  G  R  F  T  Q  *  E  S  M  G  F  N  G  L  H  I  R  I  R  N  S  *  S  S  Q  I  C  *  L  *  W  L  F  G  H  L  *  S  Y   : *  V  Q  C  Y  Y  *  F  L  L  G  T  I  I  S  *  I  K  L  R  R  S  I  I  S  S  C  G  R  T  H  S  E  N  R  F  D  R  K  T  C  Q  N  L  E  *  C  *  C  A  S  F  *  F  I  S  M  V  E  I  E  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0013N18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93953" stop="93592"/>
                    <exon start="93510" stop="93339"/>
                    <exon start="93235" stop="93047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMNGRPVLFGSSLKNKGMCIQLSFQLLVVTITAVLVLTVLSMSRGIGQAPKLVEKQTQISSLSSCNFYSGKWVFDNQSRPLYNGTNCSFMDDGMACQKFGRKNLDYLYWKWQPNDCDLPRFNATAMLEKLRNKRVVYVGDSLNRNQWVSMVCILESEIPNHLKYVNYNGSLVTFKAIEYNATIDFYWAPLLVESNCDDPSYHRVEERIVRIDSIEKHARIWNDADVLVFNSYLWWRLNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="103583" PGL_stop="104052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103583" e_stop="104052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103583" e_stop="104052" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103583" stop="104052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLET-1-A5" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATCAAAATCATATAACTTTAGTATTTCTGAAAATAAACTTCCATTTTTCTAAATGGGCATACAGAATCCCCTTATTGATTACATCCAAATATAACTTATAGACTTCACAACGTAATACATAAACATAATTTGCATTCTCTCTCTATATATAAATAAAGACGCTTAGCCCTGGGCGAAGTTCTTTTGATTGTTACAGTCCAAATTTTCACCAGTAGGAACATTCAACATACCACAATACCTCCTGTAAAATCCAATTCGACTTTCCGCTGCAGTATTCGGACCCATCCCACATTCAAATTGACCGTTAATGATGTTGGTAATGACACCGTACCCTGGAACTCTATTAGCTGCTGTATCTTTAGGGGATGGCGTCCATTGTCCAATGATAACGTTGTGGCATGATGGTTTATTATCCTGTTCTGTCATCCAGAACCATATTGCTGTTTTGAATGATATTATAGGATCT</gDNA_template>
            <first_frame> K  D  Q  N  H  I  T  L  V  F  L  K  I  N  F  H  F  S  K  W  A  Y  R  I  P  L  L  I  T  S  K  Y  N  L  *  T  S  Q  R  N  T  *  T  *  F  A  F  S  L  Y  I  *  I  K  T  L  S  P  G  R  S  S  F  D  C  Y  S  P  N  F  H  Q  *  E  H  S  T  Y  H  N  T  S  C  K  I  Q  F  D  F  P  L  Q  Y  S  D  P  S  H  I  Q  I  D  R  *  *  C  W  *  *  H  R  T  L  E  L  Y  *  L  L  Y  L  *  G  M  A  S  I  V  Q  *  *  R  C  G  M  M  V  Y  Y  P  V  L  S  S  R  T  I  L  L  F  *  M  I  L  *  D   </first_frame>
            <second_frame>  K  I  K  I  I  *  L  *  Y  F  *  K  *  T  S  I  F  L  N  G  H  T  E  S  P  Y  *  L  H  P  N  I  T  Y  R  L  H  N  V  I  H  K  H  N  L  H  S  L  S  I  Y  K  *  R  R  L  A  L  G  E  V  L  L  I  V  T  V  Q  I  F  T  S  R  N  I  Q  H  T  T  I  P  P  V  K  S  N  S  T  F  R  C  S  I  R  T  H  P  T  F  K  L  T  V  N  D  V  G  N  D  T  V  P  W  N  S  I  S  C  C  I  F  R  G  W  R  P  L  S  N  D  N  V  V  A  *  W  F  I  I  L  F  C  H  P  E  P  Y  C  C  F  E  *  Y  Y  R  I  </second_frame>
            <third_frame>   R  S  K  S  Y  N  F  S  I  S  E  N  K  L  P  F  F  *  M  G  I  Q  N  P  L  I  D  Y  I  Q  I  *  L  I  D  F  T  T  *  Y  I  N  I  I  C  I  L  S  L  Y  I  N  K  D  A  *  P  W  A  K  F  F  *  L  L  Q  S  K  F  S  P  V  G  T  F  N  I  P  Q  Y  L  L  *  N  P  I  R  L  S  A  A  V  F  G  P  I  P  H  S  N  *  P  L  M  M  L  V  M  T  P  Y  P  G  T  L  L  A  A  V  S  L  G  D  G  V  H  C  P  M  I  T  L  W  H  D  G  L  L  S  C  S  V  I  Q  N  H  I  A  V  L  N  D  I  I  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0013N18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103743" stop="103988"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLALGEVLLIVTVQIFTSRNIQHTTIPPVKSNSTFRCSIRTHPTFKLTVNDVGNDTVPWNSISCCIFRGWRPLSNDNVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 6344 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2114 bytes was the average size of a spliced alignment
$ 8232 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2744 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 13 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:56
-->
