<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:05:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346704" ref_strand="+" ref_description="SGN-E346704 [cTOF-28-F17]">
      <seq>aaaaaaaaaaaattaagaaatgcaaccattctgatatgttgttaactagtcattattgttcaaaaatagcaactcatggaggcacagttgtggtgcaataagacttacaattgtatagggacagagacatggagaattcaacatccactccaaattttgcatacaagtaattggcaacaacctatttttcagccttttaattcctcaatttcccacagtctgacttgtagacacatccaccgcaatggaataaagacatttgctacaagaaggagaagatcaaacatagaaacagacacttatgtactaatggaacctgggaagtcagaggaatttgttactgaggaagaattaagagacaagttaaagagttggttagaaaattggccagccaaaacactgccaccagaccttgctagatttgaagatagtgatgatgctgttgaatatttagtaaaatctgtttgtgaacttgaaattgatggagatgttggttccctacaatgngtaccaagttcgtttacaacaagacatcatatgaaaagactctcgatttataattcgttacttttctaaataacagttgatgtaatttttctttgtatcgttttaattttattataagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="9119" stop="12137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9419" g_stop="9536" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10147" g_stop="10283" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="255" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11460" g_stop="11840" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="634" r_length="379" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E346704" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9419" e_stop="9536"/>
          <exon e_start="10147" e_stop="10283"/>
          <exon e_start="11460" e_stop="11840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATTAAGAAATGCAACCATTCTGATATGTTGTTAACTAGTCATTATTGTTCAAAAATAGCAACTCATGGAGGCACAGTTGTGGTGCAATAAGACTTACAATTGTATAGGTAATTTCCCACTGAAATCCTTGGCACTTCTTCCTGTTTTTATCTAGTTAAAAACAGTGACTTTTTTTTTTATGTATTATTATTGAAAGTGGAATAACTTTGTATTATGCAACAAGTTAGAATCTCCATATTGATTTTGGAAATGGGTTGTTGTCTCGGGTCTCAAAATCCGGAGACGTATATACCTTGTCCTAAGCAATGTAAGAGATATTGACTTCGTTTTTTTTTTTACTAAGTATTCATAAATCACAAGTAAAATGAAAAGATAGGTTATAATATGAAAAATGACCCTTATTATTATTATATCGATGTATTCAATTTTTCACTTTTTCAAATCTCGACACATTTTGTGTATGCCACTAATTGTGATCTCTTGCTATGTATGGTTAGTTTTTTTGAGTTGACATGTATCTAAAGTTCGTTTTTCTTGAATATTTAGACACACTCCTATATATTCTTGAATTTCGAAATGAATTGTTATCTCATTGAGATGATTCTCACTTTGTGAACATCCCCAAAAAAATGAAAAAGGACCTTGTAGTTGTAGTAATTAAAGTAAAGTAGGACAAAAAAATGTTTTAGTAATTGTAACTTATATTTCATATGGCAGGGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAGGTATCTTTTGTGTAAATTACGCGAAGTTCACCATATTTGTCTTTCGTTGATACTTTGATTCATATTATATTTTTGTCGTTATTTAATTGGATTAAAAATATTTCAATTTCACAGAAAACTCAATCGAGCATAGTTAGAACACTAATAAAAACATATTTAACCTACACACGTATTATTAGTTCAATTTCTAATTCGTAAATGCAATTACCCAACAGCTTTTGAAGTTGTATTTGTACAACAACTTGATTATATTATAGTGAATTTAAATTAAAAATTCTAGTAAAGATGTAACAAACGCGAGTCCCGAGCCTAAAGGGTATAAAATATTAATAAAAATTTCAAAATGGTATATTTTTATATCAACCAAAACGAAAAAATTGCTGGAACAACAGCGATTTGCTCCGCCGGAAAAAGTAAAATCACTGCTACTGCAACGATTTTGTAAAATGTGATTTTTTTTTAAAAAAAAAACTTAAAGAAAATCGTTGCCTTAAAATTTATTTTTTTTTAAATAAAAGAAAGCTTTAAAAAAATTAAAAAAATGAAATCACTGCATAGGCAGCGATTTTCTTTTAAAAAAATCACATTCTGCACTGCAGCGATTTTGCTTTTTTCGGCTGAGGAAAGTCAACAATTTTACTGTTTTGATTACTATAAAATTTTATGTACCATTTTAAAATTTTTATTAATATTTTATACCCTTTAAGCTACGGACTCTAGCATACATAATGTCAATAAACGAGAAAATACATACATTACATTGCTTCAACCTACAAAGTATCTTTATATTCAATTAAACCACCAAATTCCATTATTAGATTCCATCAACTTCCATAACACACCCTTTAACTCAATATCACAAAAAAAAAAAAAATTTAGCGACAATAAGTATTAACATTAATTAAGAATGCTAAAAAAATTTTATCAGCATCAGTTAAGTGTCATTTGAACCAGTGTCACTAAAGACTTTAAGGACATATACGAAGAGTGTTAATTGCCGCTAAAGTTACATAAAAATTAATTGCAGTTAACAATCATTTTTATGTAGTGACGTGACCGATGAAAATTATTTAAAACTTCACTTCTGTTCATCTATTTTATATAGGTTAAGCAACACTTCACTTTGTTAATTGTCTCTTCTTCTTTTTTTGTGTGTGTGTAAAATAAATTAATCAGACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATG-GTACCAAGTTCGTTTACAACAAGACATCATATGAAAGGACTCTCGATTTTTTTATAATCCGTTA-TTTTTTAAATAACAGTTGATGTAATTTTTCTTTGTATCATTTTAATTTTATTAAAAAAAAACACTG</genome_strand>
        <mrna_strand>AAAAAAAAAAAATTAAGAAATGCAACCATTCTGATATGTTGTTAACTAGTCATTATTGTTCAAAAATAGCAACTCATGGAGGCACAGTTGTGGTGCAATAAGACTTACAATTGTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGNGTACCAAGTTCGTTTACAACAAGACATCATATGAAAAGACTCTCGA----TTTATAATTCGTTACTTTTCTAAATAACAGTTGATGTAATTTTTCTTTGTATCGTTTTAATTTTATTATAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369375" ref_strand="+" ref_description="SGN-E369375 [TUS-25-A2](-)">
      <seq>gcacagttgtggtgcaataagacttacaattgtatagggacagagacatggagaattcaacatccactccaaattttgcatacaagtaattggcaacaacctatttttcagccttttaattcctcaatttcccacagtctgacttgtagacacatccaccgcaatggaataaagacatttgctacaagaaggagaagatcaaacatagaaacagacacttatgtactaatggaacctgggaagtcagaggaatttgttactgaggaagaattaagagacaagttaaagagttggttagaaaattggccagccaaaacactgccaccagaccttgctagatttgaagatagtgatgatgctgttgaatatttagtaaaatctgtttgtgaacttgaaattgatggagatgttggttccctacaatggtaccaagttcgtttacaacaagacatcatatgaaaagactctcgatttataattcgttacttttctaaataacagttgatgtaatttttctttgtatcgttttaattttatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="9200" stop="12135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9500" g_stop="9536" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10147" g_stop="10283" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="174" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11460" g_stop="11835" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="548" r_length="374" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E369375" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9500" e_stop="9536"/>
          <exon e_start="10147" e_stop="10283"/>
          <exon e_start="11460" e_stop="11835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTTGTGGTGCAATAAGACTTACAATTGTATAGGTAATTTCCCACTGAAATCCTTGGCACTTCTTCCTGTTTTTATCTAGTTAAAAACAGTGACTTTTTTTTTTATGTATTATTATTGAAAGTGGAATAACTTTGTATTATGCAACAAGTTAGAATCTCCATATTGATTTTGGAAATGGGTTGTTGTCTCGGGTCTCAAAATCCGGAGACGTATATACCTTGTCCTAAGCAATGTAAGAGATATTGACTTCGTTTTTTTTTTTACTAAGTATTCATAAATCACAAGTAAAATGAAAAGATAGGTTATAATATGAAAAATGACCCTTATTATTATTATATCGATGTATTCAATTTTTCACTTTTTCAAATCTCGACACATTTTGTGTATGCCACTAATTGTGATCTCTTGCTATGTATGGTTAGTTTTTTTGAGTTGACATGTATCTAAAGTTCGTTTTTCTTGAATATTTAGACACACTCCTATATATTCTTGAATTTCGAAATGAATTGTTATCTCATTGAGATGATTCTCACTTTGTGAACATCCCCAAAAAAATGAAAAAGGACCTTGTAGTTGTAGTAATTAAAGTAAAGTAGGACAAAAAAATGTTTTAGTAATTGTAACTTATATTTCATATGGCAGGGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAGGTATCTTTTGTGTAAATTACGCGAAGTTCACCATATTTGTCTTTCGTTGATACTTTGATTCATATTATATTTTTGTCGTTATTTAATTGGATTAAAAATATTTCAATTTCACAGAAAACTCAATCGAGCATAGTTAGAACACTAATAAAAACATATTTAACCTACACACGTATTATTAGTTCAATTTCTAATTCGTAAATGCAATTACCCAACAGCTTTTGAAGTTGTATTTGTACAACAACTTGATTATATTATAGTGAATTTAAATTAAAAATTCTAGTAAAGATGTAACAAACGCGAGTCCCGAGCCTAAAGGGTATAAAATATTAATAAAAATTTCAAAATGGTATATTTTTATATCAACCAAAACGAAAAAATTGCTGGAACAACAGCGATTTGCTCCGCCGGAAAAAGTAAAATCACTGCTACTGCAACGATTTTGTAAAATGTGATTTTTTTTTAAAAAAAAAACTTAAAGAAAATCGTTGCCTTAAAATTTATTTTTTTTTAAATAAAAGAAAGCTTTAAAAAAATTAAAAAAATGAAATCACTGCATAGGCAGCGATTTTCTTTTAAAAAAATCACATTCTGCACTGCAGCGATTTTGCTTTTTTCGGCTGAGGAAAGTCAACAATTTTACTGTTTTGATTACTATAAAATTTTATGTACCATTTTAAAATTTTTATTAATATTTTATACCCTTTAAGCTACGGACTCTAGCATACATAATGTCAATAAACGAGAAAATACATACATTACATTGCTTCAACCTACAAAGTATCTTTATATTCAATTAAACCACCAAATTCCATTATTAGATTCCATCAACTTCCATAACACACCCTTTAACTCAATATCACAAAAAAAAAAAAAATTTAGCGACAATAAGTATTAACATTAATTAAGAATGCTAAAAAAATTTTATCAGCATCAGTTAAGTGTCATTTGAACCAGTGTCACTAAAGACTTTAAGGACATATACGAAGAGTGTTAATTGCCGCTAAAGTTACATAAAAATTAATTGCAGTTAACAATCATTTTTATGTAGTGACGTGACCGATGAAAATTATTTAAAACTTCACTTCTGTTCATCTATTTTATATAGGTTAAGCAACACTTCACTTTGTTAATTGTCTCTTCTTCTTTTTTTGTGTGTGTGTAAAATAAATTAATCAGACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAGGACTCTCGATTTTTTTATAATCCGTTA-TTTTTTAAATAACAGTTGATGTAATTTTTCTTTGTATCATTTTAATTTTAT-TAAAAAAAAA</genome_strand>
        <mrna_strand>GCACAGTTGTGGTGCAATAAGACTTACAATTGTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAAGACTCTCGA----TTTATAATTCGTTACTTTTCTAAATAACAGTTGATGTAATTTTTCTTTGTATCGTTTTAATTTTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369299" ref_strand="+" ref_description="SGN-E369299 [TUS-25-A2]">
      <seq>cacagttgtggtgcaataagacttacaattgtatagggacagagacatggagaattcaacatccactccaaattttgcatacaagtaattggcaacaacctatttttcagccttttaattcctcaatttcccacagtctgacttgtagacacatccaccgcaatggaataaagacatttgctacaagaaggagaagatcaaacatagaaacagacacttatgtactaatggaacctgggaagtcagaggaatttgttactgaggaagaattaagagacaagttaaagagttggttagaaaattggccagccaaaacactgccaccagaccttgctagatttgaagatagtgatgatgctgttgaatatttagtaaaatctgtttgtgaacttgaaattgatggagatgttggttccctacaatggtaccaagttcgtttacaacaagacatcatatgaaaagactctcgatttataattcgttacttttctaaataacagttgatgtaatttttctttgtatcgttttaattttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="9201" stop="12137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9501" g_stop="9536" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10147" g_stop="10283" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="173" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11460" g_stop="11838" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="549" r_length="376" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E369299" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9501" e_stop="9536"/>
          <exon e_start="10147" e_stop="10283"/>
          <exon e_start="11460" e_stop="11838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAGGTAATTTCCCACTGAAATCCTTGGCACTTCTTCCTGTTTTTATCTAGTTAAAAACAGTGACTTTTTTTTTTATGTATTATTATTGAAAGTGGAATAACTTTGTATTATGCAACAAGTTAGAATCTCCATATTGATTTTGGAAATGGGTTGTTGTCTCGGGTCTCAAAATCCGGAGACGTATATACCTTGTCCTAAGCAATGTAAGAGATATTGACTTCGTTTTTTTTTTTACTAAGTATTCATAAATCACAAGTAAAATGAAAAGATAGGTTATAATATGAAAAATGACCCTTATTATTATTATATCGATGTATTCAATTTTTCACTTTTTCAAATCTCGACACATTTTGTGTATGCCACTAATTGTGATCTCTTGCTATGTATGGTTAGTTTTTTTGAGTTGACATGTATCTAAAGTTCGTTTTTCTTGAATATTTAGACACACTCCTATATATTCTTGAATTTCGAAATGAATTGTTATCTCATTGAGATGATTCTCACTTTGTGAACATCCCCAAAAAAATGAAAAAGGACCTTGTAGTTGTAGTAATTAAAGTAAAGTAGGACAAAAAAATGTTTTAGTAATTGTAACTTATATTTCATATGGCAGGGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAGGTATCTTTTGTGTAAATTACGCGAAGTTCACCATATTTGTCTTTCGTTGATACTTTGATTCATATTATATTTTTGTCGTTATTTAATTGGATTAAAAATATTTCAATTTCACAGAAAACTCAATCGAGCATAGTTAGAACACTAATAAAAACATATTTAACCTACACACGTATTATTAGTTCAATTTCTAATTCGTAAATGCAATTACCCAACAGCTTTTGAAGTTGTATTTGTACAACAACTTGATTATATTATAGTGAATTTAAATTAAAAATTCTAGTAAAGATGTAACAAACGCGAGTCCCGAGCCTAAAGGGTATAAAATATTAATAAAAATTTCAAAATGGTATATTTTTATATCAACCAAAACGAAAAAATTGCTGGAACAACAGCGATTTGCTCCGCCGGAAAAAGTAAAATCACTGCTACTGCAACGATTTTGTAAAATGTGATTTTTTTTTAAAAAAAAAACTTAAAGAAAATCGTTGCCTTAAAATTTATTTTTTTTTAAATAAAAGAAAGCTTTAAAAAAATTAAAAAAATGAAATCACTGCATAGGCAGCGATTTTCTTTTAAAAAAATCACATTCTGCACTGCAGCGATTTTGCTTTTTTCGGCTGAGGAAAGTCAACAATTTTACTGTTTTGATTACTATAAAATTTTATGTACCATTTTAAAATTTTTATTAATATTTTATACCCTTTAAGCTACGGACTCTAGCATACATAATGTCAATAAACGAGAAAATACATACATTACATTGCTTCAACCTACAAAGTATCTTTATATTCAATTAAACCACCAAATTCCATTATTAGATTCCATCAACTTCCATAACACACCCTTTAACTCAATATCACAAAAAAAAAAAAAATTTAGCGACAATAAGTATTAACATTAATTAAGAATGCTAAAAAAATTTTATCAGCATCAGTTAAGTGTCATTTGAACCAGTGTCACTAAAGACTTTAAGGACATATACGAAGAGTGTTAATTGCCGCTAAAGTTACATAAAAATTAATTGCAGTTAACAATCATTTTTATGTAGTGACGTGACCGATGAAAATTATTTAAAACTTCACTTCTGTTCATCTATTTTATATAGGTTAAGCAACACTTCACTTTGTTAATTGTCTCTTCTTCTTTTTTTGTGTGTGTGTAAAATAAATTAATCAGACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAGGACTCTCGATTTTTTTATAATCCGTTA-TTTTTTAAATAACAGTTGATGTAATTTTTCTTTGTATCATTTTAATTTTATTAAAAAAAAACAC</genome_strand>
        <mrna_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAAGACTCTCGA----TTTATAATTCGTTACTTTTCTAAATAACAGTTGATGTAATTTTTCTTTGTATCGTTTTAATTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378381" ref_strand="+" ref_description="SGN-E378381 [TUS-25-A2]">
      <seq>cacagttgtggtgcaataagacttacaattgtatagggacagagacatggagaattcaacatccactccaaattttgcatacaagtaattggcaacaacctatttttcagccttttaattcctcaatttcccacagtctgacttgtagacacatccaccgcaatggaataaagacatttgctacaagaaggagaagatcaaacatagaaacagacacttatgtactaatggaacctgggaagtcagaggaatttgttactgaggaagaattaagagacaagttaaagagttggttagaaaattggccagccaaaacactgccaccagaccttgctagatttgaagatagtgatgatgctgttgaatatttagtaaaatctgtttgtgaacttgaattgatggagatgttggttccctacagtggtacaagttcgtttaccnacagacatcatatgaaaagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="9201" stop="12027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9501" g_stop="9536" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10147" g_stop="10283" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="173" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11460" g_stop="11752" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="464" r_length="291" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E378381" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9501" e_stop="9536"/>
          <exon e_start="10147" e_stop="10283"/>
          <exon e_start="11460" e_stop="11752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAGGTAATTTCCCACTGAAATCCTTGGCACTTCTTCCTGTTTTTATCTAGTTAAAAACAGTGACTTTTTTTTTTATGTATTATTATTGAAAGTGGAATAACTTTGTATTATGCAACAAGTTAGAATCTCCATATTGATTTTGGAAATGGGTTGTTGTCTCGGGTCTCAAAATCCGGAGACGTATATACCTTGTCCTAAGCAATGTAAGAGATATTGACTTCGTTTTTTTTTTTACTAAGTATTCATAAATCACAAGTAAAATGAAAAGATAGGTTATAATATGAAAAATGACCCTTATTATTATTATATCGATGTATTCAATTTTTCACTTTTTCAAATCTCGACACATTTTGTGTATGCCACTAATTGTGATCTCTTGCTATGTATGGTTAGTTTTTTTGAGTTGACATGTATCTAAAGTTCGTTTTTCTTGAATATTTAGACACACTCCTATATATTCTTGAATTTCGAAATGAATTGTTATCTCATTGAGATGATTCTCACTTTGTGAACATCCCCAAAAAAATGAAAAAGGACCTTGTAGTTGTAGTAATTAAAGTAAAGTAGGACAAAAAAATGTTTTAGTAATTGTAACTTATATTTCATATGGCAGGGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAGGTATCTTTTGTGTAAATTACGCGAAGTTCACCATATTTGTCTTTCGTTGATACTTTGATTCATATTATATTTTTGTCGTTATTTAATTGGATTAAAAATATTTCAATTTCACAGAAAACTCAATCGAGCATAGTTAGAACACTAATAAAAACATATTTAACCTACACACGTATTATTAGTTCAATTTCTAATTCGTAAATGCAATTACCCAACAGCTTTTGAAGTTGTATTTGTACAACAACTTGATTATATTATAGTGAATTTAAATTAAAAATTCTAGTAAAGATGTAACAAACGCGAGTCCCGAGCCTAAAGGGTATAAAATATTAATAAAAATTTCAAAATGGTATATTTTTATATCAACCAAAACGAAAAAATTGCTGGAACAACAGCGATTTGCTCCGCCGGAAAAAGTAAAATCACTGCTACTGCAACGATTTTGTAAAATGTGATTTTTTTTTAAAAAAAAAACTTAAAGAAAATCGTTGCCTTAAAATTTATTTTTTTTTAAATAAAAGAAAGCTTTAAAAAAATTAAAAAAATGAAATCACTGCATAGGCAGCGATTTTCTTTTAAAAAAATCACATTCTGCACTGCAGCGATTTTGCTTTTTTCGGCTGAGGAAAGTCAACAATTTTACTGTTTTGATTACTATAAAATTTTATGTACCATTTTAAAATTTTTATTAATATTTTATACCCTTTAAGCTACGGACTCTAGCATACATAATGTCAATAAACGAGAAAATACATACATTACATTGCTTCAACCTACAAAGTATCTTTATATTCAATTAAACCACCAAATTCCATTATTAGATTCCATCAACTTCCATAACACACCCTTTAACTCAATATCACAAAAAAAAAAAAAATTTAGCGACAATAAGTATTAACATTAATTAAGAATGCTAAAAAAATTTTATCAGCATCAGTTAAGTGTCATTTGAACCAGTGTCACTAAAGACTTTAAGGACATATACGAAGAGTGTTAATTGCCGCTAAAGTTACATAAAAATTAATTGCAGTTAACAATCATTTTTATGTAGTGACGTGACCGATGAAAATTATTTAAAACTTCACTTCTGTTCATCTATTTTATATAGGTTAAGCAACACTTCACTTTGTTAATTGTCTCTTCTTCTTTTTTTGTGTGTGTGTAAAATAAATTAATCAGACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAGGACTC</genome_strand>
        <mrna_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTG-AATTGATGGAGATGTTGGTTCCCTACAGTGGTA-CAAGTTCGTTTACCNACAGACATCATATGAAAAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247114" ref_strand="+" ref_description="SGN-E247114 [cLEF-46-E11]">
      <seq>cacagttgtggtgcaataagacttacaattgtatagggacagagacatggagaattcaacatccactccaaattttgcatacaagtaattggcaacaacctatttttcagccttttaattcctcaatttcccacagtctgacttgtagacacatccaccgcaatggaataaagacatttgctacaagaaggagaagatcaaacatagaaacagacacttatgtactaatggaacctgggaagtcagaggaatttgttactgaggaagaattaagagacaagttaaagagttggttagaaaattggccagccaaaacactgccaccagacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="9201" stop="11918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9501" g_stop="9536" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10147" g_stop="10283" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="173" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11460" g_stop="11618" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="332" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E247114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9501" e_stop="9536"/>
          <exon e_start="10147" e_stop="10283"/>
          <exon e_start="11460" e_stop="11618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAGGTAATTTCCCACTGAAATCCTTGGCACTTCTTCCTGTTTTTATCTAGTTAAAAACAGTGACTTTTTTTTTTATGTATTATTATTGAAAGTGGAATAACTTTGTATTATGCAACAAGTTAGAATCTCCATATTGATTTTGGAAATGGGTTGTTGTCTCGGGTCTCAAAATCCGGAGACGTATATACCTTGTCCTAAGCAATGTAAGAGATATTGACTTCGTTTTTTTTTTTACTAAGTATTCATAAATCACAAGTAAAATGAAAAGATAGGTTATAATATGAAAAATGACCCTTATTATTATTATATCGATGTATTCAATTTTTCACTTTTTCAAATCTCGACACATTTTGTGTATGCCACTAATTGTGATCTCTTGCTATGTATGGTTAGTTTTTTTGAGTTGACATGTATCTAAAGTTCGTTTTTCTTGAATATTTAGACACACTCCTATATATTCTTGAATTTCGAAATGAATTGTTATCTCATTGAGATGATTCTCACTTTGTGAACATCCCCAAAAAAATGAAAAAGGACCTTGTAGTTGTAGTAATTAAAGTAAAGTAGGACAAAAAAATGTTTTAGTAATTGTAACTTATATTTCATATGGCAGGGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAGGTATCTTTTGTGTAAATTACGCGAAGTTCACCATATTTGTCTTTCGTTGATACTTTGATTCATATTATATTTTTGTCGTTATTTAATTGGATTAAAAATATTTCAATTTCACAGAAAACTCAATCGAGCATAGTTAGAACACTAATAAAAACATATTTAACCTACACACGTATTATTAGTTCAATTTCTAATTCGTAAATGCAATTACCCAACAGCTTTTGAAGTTGTATTTGTACAACAACTTGATTATATTATAGTGAATTTAAATTAAAAATTCTAGTAAAGATGTAACAAACGCGAGTCCCGAGCCTAAAGGGTATAAAATATTAATAAAAATTTCAAAATGGTATATTTTTATATCAACCAAAACGAAAAAATTGCTGGAACAACAGCGATTTGCTCCGCCGGAAAAAGTAAAATCACTGCTACTGCAACGATTTTGTAAAATGTGATTTTTTTTTAAAAAAAAAACTTAAAGAAAATCGTTGCCTTAAAATTTATTTTTTTTTAAATAAAAGAAAGCTTTAAAAAAATTAAAAAAATGAAATCACTGCATAGGCAGCGATTTTCTTTTAAAAAAATCACATTCTGCACTGCAGCGATTTTGCTTTTTTCGGCTGAGGAAAGTCAACAATTTTACTGTTTTGATTACTATAAAATTTTATGTACCATTTTAAAATTTTTATTAATATTTTATACCCTTTAAGCTACGGACTCTAGCATACATAATGTCAATAAACGAGAAAATACATACATTACATTGCTTCAACCTACAAAGTATCTTTATATTCAATTAAACCACCAAATTCCATTATTAGATTCCATCAACTTCCATAACACACCCTTTAACTCAATATCACAAAAAAAAAAAAAATTTAGCGACAATAAGTATTAACATTAATTAAGAATGCTAAAAAAATTTTATCAGCATCAGTTAAGTGTCATTTGAACCAGTGTCACTAAAGACTTTAAGGACATATACGAAGAGTGTTAATTGCCGCTAAAGTTACATAAAAATTAATTGCAGTTAACAATCATTTTTATGTAGTGACGTGACCGATGAAAATTATTTAAAACTTCACTTCTGTTCATCTATTTTATATAGGTTAAGCAACACTTCACTTTGTTAATTGTCTCTTCTTCTTTTTTTGTGTGTGTGTAAAATAAATTAATCAGACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTT</genome_strand>
        <mrna_strand>CACAGTTGTGGTGCAATAAGACTTACAATTGTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721838" ref_strand="+" ref_description="SGN-E721838 [FC15BG10]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatggactgaactcacctgggtataagaaaaaataaataaaaaaaatcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtgggagtagtggaagttacaacgctggtgtttccgctagtaatgacttcttggacaactctgaatttggtgggagccctgggacctcgcacaatggtggtgaagaacagcttagtgcagaccaagggactgaatctgtagacaatgatttcacaccaggtgtagaaaggagcagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="12741" stop="15964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13048" g_stop="13099" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="96" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="241" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="310" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="417" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15266" g_stop="15664" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="816" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E721838" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13048" e_stop="13099"/>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAGGTATGTTTCTTCTTGAATTTTTACTATATCCATTTTCGATTAGCTTAATGTTTAAAAGGGTTTTCATTTTTAGGATACAGATTGTTATTATTTCAACTTGTTTCATTGTTTCCATTTTATAAGGTTGGGGTTTTGATCATTTTCATTCTGTTTCTTGAATACCATTATTAGTACTGTGAGTTATAGTTATGATATGATCGTGGGGGTTTACAGCTACATTTTTCTTGGTTTTTTGTACCGTGATACATTTGAGCTGAGGGTCTTTCGGAAGCGGTCTCTGTATTGAATCTTTTTTTGTTTTGGAGATCAGTAGTGACTAGTGAGCATATTGGGTGCTGATTGCTTGTAAAAATAGGATCTTTAGTATTTTTTGTTGATGGGTTTTGATTAATAGGGAGATTAGTTCATGGCTGGTTTATTTTTGGTAATTTCCGCCGGAGGGAACTGTAGGATGAGGAATGTATGTGTCTTGTGCTCTATAATTGTAGGGACTCTTCAGTTTTGATGTTGTACCCGTGTTGGGTTCTTATAAAATGCACTACTTTTGGAGAATCCGACAGGCACCCGTTTACATTTTTTAAGAGTCTGAGCAACATAAGTTGTATGACAAATATGGAAGAGTAGGTATATATTTGCTTTGTGCTGTTTTGTATGACTATGTTTGATTGAACATGTTTATTGGACTGAGTTACTATTAAAGAAATGGGAAGTTAGTTTAAATGTGTTTGATGTCAAGATGAATTTGAATTCTTTGAAGTCATGATATGGTGAAAGTTGTATTGAGTAATTTTCTTGATGGGATGTTTCACATATTTTGGAATGTCACTGTTATATAAATAGAGACGAAATATGAGCTCGGAGAAAAGGAGCCATCTTTTTCTTTTGCTTTACGCTGTTTCGTGTCATCTAGTGCCTTCCAGCATTATGGTAGAACTATTCTACTATCAAAGATTTCTTCTAAATCCAACATTTATTCTCATGTTATGTTTAATATTGACTCCTGTTGTTCTGTTCTTTTCATAGG-TTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGC</genome_strand>
        <mrna_strand>GGACTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGGACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701557" ref_strand="+" ref_description="SGN-E701557 [FA16BC05]">
      <seq>gactgaactcacctgggtataagaaaaaataaataaaaaaaatcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtgggagtagtggaagttacaacgctggtgtttccgctagtaatgacttcttggacaactctgaatttggtgggagccctgggacctcgcacaatggtggtgaagaacagcttagtgcagaccaagggactgaatctgtagacaatgatttcacaccaggtgtagaaaggagcagcagcgacgacaatgatgagcccaaggactacgccaactcgaggagttcataatacgtcctcatatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="12749" stop="16030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13049" g_stop="13099" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="196" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="265" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="372" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15266" g_stop="15730" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="837" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E701557" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13049" e_stop="13099"/>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAGGTATGTTTCTTCTTGAATTTTTACTATATCCATTTTCGATTAGCTTAATGTTTAAAAGGGTTTTCATTTTTAGGATACAGATTGTTATTATTTCAACTTGTTTCATTGTTTCCATTTTATAAGGTTGGGGTTTTGATCATTTTCATTCTGTTTCTTGAATACCATTATTAGTACTGTGAGTTATAGTTATGATATGATCGTGGGGGTTTACAGCTACATTTTTCTTGGTTTTTTGTACCGTGATACATTTGAGCTGAGGGTCTTTCGGAAGCGGTCTCTGTATTGAATCTTTTTTTGTTTTGGAGATCAGTAGTGACTAGTGAGCATATTGGGTGCTGATTGCTTGTAAAAATAGGATCTTTAGTATTTTTTGTTGATGGGTTTTGATTAATAGGGAGATTAGTTCATGGCTGGTTTATTTTTGGTAATTTCCGCCGGAGGGAACTGTAGGATGAGGAATGTATGTGTCTTGTGCTCTATAATTGTAGGGACTCTTCAGTTTTGATGTTGTACCCGTGTTGGGTTCTTATAAAATGCACTACTTTTGGAGAATCCGACAGGCACCCGTTTACATTTTTTAAGAGTCTGAGCAACATAAGTTGTATGACAAATATGGAAGAGTAGGTATATATTTGCTTTGTGCTGTTTTGTATGACTATGTTTGATTGAACATGTTTATTGGACTGAGTTACTATTAAAGAAATGGGAAGTTAGTTTAAATGTGTTTGATGTCAAGATGAATTTGAATTCTTTGAAGTCATGATATGGTGAAAGTTGTATTGAGTAATTTTCTTGATGGGATGTTTCACATATTTTGGAATGTCACTGTTATATAAATAGAGACGAAATATGAGCTCGGAGAAAAGGAGCCATCTTTTTCTTTTGCTTTACGCTGTTTCGTGTCATCTAGTGCCTTCCAGCATTATGGTAGAACTATTCTACTATCAAAGATTTCTTCTAAATCCAACATTTATTCTCATGTTATGTTTAATATTGACTCCTGTTGTTCTGTTCTTTTCATAGG-TTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTAT</genome_strand>
        <mrna_strand>GACTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGGACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCCAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699801" ref_strand="+" ref_description="SGN-E699801 [FA11BA06]">
      <seq>ctgatttcacctgggtataagaaaaaataaataaaaaaaatcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtgggagtagtggaagttacaacgctggtgtttccgctagtaatgacttcttggacaactctgaatttggtgggagccctgggacctcgcacaatggtggtgaagaacagcttagtgcaaaccaagggactgaatctgtagacaatgatttcacaccaggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="12751" stop="15948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13051" g_stop="13099" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="194" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="263" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="370" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15266" g_stop="15648" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="753" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E699801" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13051" e_stop="13099"/>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAGGTATGTTTCTTCTTGAATTTTTACTATATCCATTTTCGATTAGCTTAATGTTTAAAAGGGTTTTCATTTTTAGGATACAGATTGTTATTATTTCAACTTGTTTCATTGTTTCCATTTTATAAGGTTGGGGTTTTGATCATTTTCATTCTGTTTCTTGAATACCATTATTAGTACTGTGAGTTATAGTTATGATATGATCGTGGGGGTTTACAGCTACATTTTTCTTGGTTTTTTGTACCGTGATACATTTGAGCTGAGGGTCTTTCGGAAGCGGTCTCTGTATTGAATCTTTTTTTGTTTTGGAGATCAGTAGTGACTAGTGAGCATATTGGGTGCTGATTGCTTGTAAAAATAGGATCTTTAGTATTTTTTGTTGATGGGTTTTGATTAATAGGGAGATTAGTTCATGGCTGGTTTATTTTTGGTAATTTCCGCCGGAGGGAACTGTAGGATGAGGAATGTATGTGTCTTGTGCTCTATAATTGTAGGGACTCTTCAGTTTTGATGTTGTACCCGTGTTGGGTTCTTATAAAATGCACTACTTTTGGAGAATCCGACAGGCACCCGTTTACATTTTTTAAGAGTCTGAGCAACATAAGTTGTATGACAAATATGGAAGAGTAGGTATATATTTGCTTTGTGCTGTTTTGTATGACTATGTTTGATTGAACATGTTTATTGGACTGAGTTACTATTAAAGAAATGGGAAGTTAGTTTAAATGTGTTTGATGTCAAGATGAATTTGAATTCTTTGAAGTCATGATATGGTGAAAGTTGTATTGAGTAATTTTCTTGATGGGATGTTTCACATATTTTGGAATGTCACTGTTATATAAATAGAGACGAAATATGAGCTCGGAGAAAAGGAGCCATCTTTTTCTTTTGCTTTACGCTGTTTCGTGTCATCTAGTGCCTTCCAGCATTATGGTAGAACTATTCTACTATCAAAGATTTCTTCTAAATCCAACATTTATTCTCATGTTATGTTTAATATTGACTCCTGTTGTTCTGTTCTTTTCATAGG-TTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGT</genome_strand>
        <mrna_strand>CTGATTTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGGACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAAACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699949" ref_strand="+" ref_description="SGN-E699949 [FA11CG04]">
      <seq>ctgcactctcctgggtataagaaaaaataaataaaaaaaatcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtgggagtagtggaagttacaacgctggtgtttccgctagtaatgacttcttggacaactctgaatttggtgggagccctgggacctcccccaatgggggtgaaaaacagcttagtgcaaaccaagggactgaatctgtaaaccatgatttcccaccaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="12751" stop="15946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13051" g_stop="13099" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="194" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="263" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="370" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15266" g_stop="15646" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="751" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E699949" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13051" e_stop="13099"/>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAGGTATGTTTCTTCTTGAATTTTTACTATATCCATTTTCGATTAGCTTAATGTTTAAAAGGGTTTTCATTTTTAGGATACAGATTGTTATTATTTCAACTTGTTTCATTGTTTCCATTTTATAAGGTTGGGGTTTTGATCATTTTCATTCTGTTTCTTGAATACCATTATTAGTACTGTGAGTTATAGTTATGATATGATCGTGGGGGTTTACAGCTACATTTTTCTTGGTTTTTTGTACCGTGATACATTTGAGCTGAGGGTCTTTCGGAAGCGGTCTCTGTATTGAATCTTTTTTTGTTTTGGAGATCAGTAGTGACTAGTGAGCATATTGGGTGCTGATTGCTTGTAAAAATAGGATCTTTAGTATTTTTTGTTGATGGGTTTTGATTAATAGGGAGATTAGTTCATGGCTGGTTTATTTTTGGTAATTTCCGCCGGAGGGAACTGTAGGATGAGGAATGTATGTGTCTTGTGCTCTATAATTGTAGGGACTCTTCAGTTTTGATGTTGTACCCGTGTTGGGTTCTTATAAAATGCACTACTTTTGGAGAATCCGACAGGCACCCGTTTACATTTTTTAAGAGTCTGAGCAACATAAGTTGTATGACAAATATGGAAGAGTAGGTATATATTTGCTTTGTGCTGTTTTGTATGACTATGTTTGATTGAACATGTTTATTGGACTGAGTTACTATTAAAGAAATGGGAAGTTAGTTTAAATGTGTTTGATGTCAAGATGAATTTGAATTCTTTGAAGTCATGATATGGTGAAAGTTGTATTGAGTAATTTTCTTGATGGGATGTTTCACATATTTTGGAATGTCACTGTTATATAAATAGAGACGAAATATGAGCTCGGAGAAAAGGAGCCATCTTTTTCTTTTGCTTTACGCTGTTTCGTGTCATCTAGTGCCTTCCAGCATTATGGTAGAACTATTCTACTATCAAAGATTTCTTCTAAATCCAACATTTATTCTCATGTTATGTTTAATATTGACTCCTGTTGTTCTGTTCTTTTCATAGG-TTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGT</genome_strand>
        <mrna_strand>CTGCACTCTCCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGGACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCCCCCAATGGGGGTGAAAAACAGCTTAGTGCAAACCAAGGGACTGAATCTGTAAACCATGATTTCCCACCAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346773" ref_strand="+" ref_description="SGN-E346773 [cTOF-32-A9]">
      <seq>gggtataagaaaaaataaataaaaaaaatcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="12763" stop="15791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13063" g_stop="13099" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="182" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="251" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="358" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15266" g_stop="15491" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="584" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E346773" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13063" e_stop="13099"/>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAGGTATGTTTCTTCTTGAATTTTTACTATATCCATTTTCGATTAGCTTAATGTTTAAAAGGGTTTTCATTTTTAGGATACAGATTGTTATTATTTCAACTTGTTTCATTGTTTCCATTTTATAAGGTTGGGGTTTTGATCATTTTCATTCTGTTTCTTGAATACCATTATTAGTACTGTGAGTTATAGTTATGATATGATCGTGGGGGTTTACAGCTACATTTTTCTTGGTTTTTTGTACCGTGATACATTTGAGCTGAGGGTCTTTCGGAAGCGGTCTCTGTATTGAATCTTTTTTTGTTTTGGAGATCAGTAGTGACTAGTGAGCATATTGGGTGCTGATTGCTTGTAAAAATAGGATCTTTAGTATTTTTTGTTGATGGGTTTTGATTAATAGGGAGATTAGTTCATGGCTGGTTTATTTTTGGTAATTTCCGCCGGAGGGAACTGTAGGATGAGGAATGTATGTGTCTTGTGCTCTATAATTGTAGGGACTCTTCAGTTTTGATGTTGTACCCGTGTTGGGTTCTTATAAAATGCACTACTTTTGGAGAATCCGACAGGCACCCGTTTACATTTTTTAAGAGTCTGAGCAACATAAGTTGTATGACAAATATGGAAGAGTAGGTATATATTTGCTTTGTGCTGTTTTGTATGACTATGTTTGATTGAACATGTTTATTGGACTGAGTTACTATTAAAGAAATGGGAAGTTAGTTTAAATGTGTTTGATGTCAAGATGAATTTGAATTCTTTGAAGTCATGATATGGTGAAAGTTGTATTGAGTAATTTTCTTGATGGGATGTTTCACATATTTTGGAATGTCACTGTTATATAAATAGAGACGAAATATGAGCTCGGAGAAAAGGAGCCATCTTTTTCTTTTGCTTTACGCTGTTTCGTGTCATCTAGTGCCTTCCAGCATTATGGTAGAACTATTCTACTATCAAAGATTTCTTCTAAATCCAACATTTATTCTCATGTTATGTTTAATATTGACTCCTGTTGTTCTGTTCTTTTCATAGGTTT-AAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGA</genome_strand>
        <mrna_strand>GGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726947" ref_strand="+" ref_description="SGN-E726947 [LA13BB07]">
      <seq>cgattcttcgaaggttttaaagatggctttattcaatagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattatgccacagaaaagcgtcctggaggattcgggcgtggttctggtggtggaggtggatttagctatggtgggggagctggaggttactcatatgggaattatggaggtggtggtaactatggtagcaacaacagttaccctgcaggtggtggcagctatggtggggatagttttggggctggatatggtggtgggagtagtggaagttacaacgctggtgtttccgctagtaatgacttcttggacaactctgaatttggtgggagccctgggacctcgcacaatggtggtgaagaacagcttagtgcagaccaagggactgaatctgtagacaatgatttcacaccaggtgtagaaaggagcagcagcgacgacaatgatgagccaaaggactacgccaactcgaggagttcataatacgtcctcatatgctattcaccaactttgggtttgatgagtacatgttcacaatacgtgttgagttaaaagaaagtatattctatttccagcagggttgctactgggtgaatgcttcatctaagtttaatcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="13814" stop="16149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14123" g_stop="14266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="158" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="227" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="334" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15266" g_stop="15849" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="918" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E726947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14123" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTATTCACCAACTTTGGGTTTGATGAGTACATGTTCACAATACGTGTTGAGTTAAAAGAAAGTATATTCTATTTCCAGCAGGGTTGCTACTGGTTGAATGCTTCATCTAAGTTTAATCAATCT</genome_strand>
        <mrna_strand>TTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGGACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTATTCACCAACTTTGGGTTTGATGAGTACATGTTCACAATACGTGTTGAGTTAAAAGAAAGTATATTCTATTTCCAGCAGGGTTGCTACTGGGTGAATGCTTCATCTAAGTTTAATCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281228" ref_strand="-" ref_description="SGN-E281228 [cLEL-1-I21](-)">
      <seq>gcacgagtagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgggtgccactagaacctcactttaccagcttataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggcattctcccaacatggtcaagtgattgaagctagagttatttttgatcgtgacagtgggagatccagagggtttggttttgttacttatacatctgctgaagaagcatcaagtgccctgagtgccttggatggccaggatctccacgggagacggataagggtgaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="13843" stop="15598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14138" g_stop="14266" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14358" g_stop="14426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="198" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14567" g_stop="14673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="305" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15266" g_stop="15298" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="338" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E281228" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281228" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14138" e_stop="14266"/>
          <exon e_start="14358" e_stop="14426"/>
          <exon e_start="14567" e_stop="14673"/>
          <exon e_start="15266" e_stop="15298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAGGTACTTCATTTATGTTTTGACCTCTGATAAAATAAGATTTTGCAGCTTACTCCAATTACGTGGTTCATGGAGCCTATAAAATTGATGTGCCCTAAACAAGAAAAACAAATTAACTAAACAATGATGTGTAACTCGTGCAGCTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAGGTAATGATGCCCAGGTTTCTTTGTGACCGGTCAGTTCTTCTCGAAGAGTGATATTTCTTGTTTTTGGTATCACTTTGTGTAGTCAAGAGTGTCAGGCAAGTTATGTTATTTTCCTAAAGATGCTATCCATCTTAGTCCACTCCATCAATGATGGTTCCCATCTAATAGGTTCTATTACATGAAAATTTTGCAACTTCATGTTATTGTGCCTTTCAAAAAATCAAGATCAAATTGCTTCCGGCACTTTCTTACCGCTAAACGAGATGAAATATTTGAACAACTTTTTGAGACCAGTATCAGGTGATAATTTCATGTTGTTCCTTTCGTTTTATTCACCGTATTCCACTGTCAATTACTGGAAGAAATTAATTAGTTAGCCTTAGTGACAGGGTGGTCTTTCCATCTAGTGCTAACCAATAAGGTTCTATTGGGTCAGAAATCCATCAGGACTTCATCTTGTTTTCCCTTTCTTTTATATTATGGACAAATTACATTTTGCTATTTTCTTCCATAATTTGAGAATGAATTTTTTTTTTTTTTGAAAAGCTTTTGGGACTAGTACTGGGTAAAATCTGTTGCGTTACTTTTGCAGGATCTCCACGGGAGACGGATAAGGGTGAATTAT</genome_strand>
        <mrna_strand>GCACGAGTAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGGGTGCCACTAGAACCTCACTTTACCAGCTTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG............................................................................................................................................CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCACGGGAGACGGATAAGGGTGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202794" ref_strand="+" ref_description="SGN-E202794 [cLEB-1-C15]">
      <seq>gcacgagtagaattggaaatatgcttaaacagagtgtaagcagacacacaaatttggaattgtgtgccactagaacctcactttaccaggctataagaagcatgtcttcttcaaagctttttgttggaggtctctcatatggcactgatgagacctctctgcgagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="13843" stop="14697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14138" g_stop="14266" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14358" g_stop="14397" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="169" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E202794" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14138" e_stop="14266"/>
          <exon e_start="14358" e_stop="14397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAGGTAAAAGGATTTTGTTCCCAGTAGTATGCAGTTGCTATGTTCTTTTTCCTTCCTTTTGTTGCTCTATAATGGCGCCAACTATCCCCTGCAGGTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGC</genome_strand>
        <mrna_strand>GCACGAGTAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACAAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG...........................................................................................GTCTCTCATATGGCACTGATGAGACCTCTCTGCGAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216378" ref_strand="+" ref_description="SGN-E216378 [cLEL-13-K8](-)">
      <seq>aatggtggtaaagaacagcttagtgcagaccaagggactgaatctgtagacaatgatttcacaccaggtgtagaaaggagcagcagcgacgacaatgatgagccaaaggactacgccaactcgaggagttcataatacgtcctcatatgctattcaccaactttgggtttgatgagtacatgttcacaatacgtgttgagttaaaagaaagtatattctatttccagcagggttgctactggttgaatgcttcatctaagtttaatcaatctgtaggattacactactcgtttcataaatgttttaagttcatggagctctccaagtactgattttgtgcaatgtacagtgctgaatctttccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="15278" stop="16245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15578" g_stop="15941" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="382"/>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E216378" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15578" e_stop="15941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTATTCACCAACTTTGGGTTTGATGAGTACATGTTCACAATACGTGTTGAGTTAAAAGAAAGTATATTCTATTTCCAGCAGGGTTGCTACTGGTTGAATGCTTCATCTAAGTTTAATCAATCTGTAGGATTACACTCTACTCGTTTCATAAATGTTTTAAGTTCATGGAGCTCTCCAAGTACTGATTTTGTGCAATGTACAGTGCTGAATCTTTT</genome_strand>
        <mrna_strand>AATGGTGGTAAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTATTCACCAACTTTGGGTTTGATGAGTACATGTTCACAATACGTGTTGAGTTAAAAGAAAGTATATTCTATTTCCAGCAGGGTTGCTACTGGTTGAATGCTTCATCTAAGTTTAATCAATCTGTAGGATTACA--CTACTCGTTTCATAAATGTTTTAAGTTCATGGAGCTCTCCAAGTACTGATTTTGTGCAATGTACAGTGCTGAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542726" ref_strand="+" ref_description="SGN-E542726 [TUS-64-C20](-)">
      <seq>gaaaaactcaaaacttttacctccttttttcctggattttctaagttttctggatggactccccctccccccttctggttgacagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcctccaccgccgccgccaccaaagtttcaatcatcctcacagaaagtgcatgataacaatatggttaacaaagcaccaagtaaaattgtaccagatacattagtccagctaatggaatatggggatgacgacgacgacgataatgatgaagcaattgacggacctttgaaaagtagctcaagtgcggtagcgactccaaagccattctgggctgtttaataatatgaccactgcacatctctgaagattttggcaacagctgaatgtgcattataagttgaatggttgttttcaattgacctggaagtggctgtgaaatataaaatatgtacccttccccaccccagcaaaaagatgtggggccaccaaatggaggaaaagaggaaaggagagttctgtagtattgtgccaatatgataatatcagagtgtaagtgatgctctatgtaaattgactcgtagaaattccngcaaccttgtatttccattcaganagttgtttgctgctggcttgtagtttcactctgaactctttatgaaacaaaganaatgccagccagtttaacctattattttctctcagtatcanatatgcagttattcgaaactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="17706" stop="15869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17406" g_stop="17082" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16682" g_stop="16160" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="851" r_length="525" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E542726" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17406" e_stop="17082"/>
          <exon e_start="16682" e_stop="16160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCC-TTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAGGTATTTGCCATCACTCAAGCTTTTTCAGTCTCAAGATTTCAATGAACTCTTGCTTGGTTTGTCTATTAGCGATGGCCTACCTATCCTCATTACCCCTTTTTTTCTTGCATTTCTTGTTACTAAGTGGAAGTGTGAAAATCCATTGAGTCCTATTAACATAGTAGAACTTATTTTACTTTCTATTTTTATCTTCCACTTCTTATTTTTGTATTATATCAGCATGAAATAAGCTTAAATGGGTGGAAGTTCACTGAAGATCTATACAAGAGACCCCAAGTAGCTTAGGATTGAGGCCTTGTAGTAGTAGTTGTTATCAGACATAACTTGTCTATTTCATTTTTACAGTTGAGAAATATGAGAGTGTTTGTATACTTGTTTGATTTGATTTGTGCATCTCAGATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATCTGATAATATCAGAGTGTAAGTGATGCTCTATGTAAAATGACTCGTAGAAATTCC-GCAACCTTGTATTTCCATTCAGA-AGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGA-AATGCCAG-CAGTTTAACCTATTATTTTCTCTCAGTATCA-ATATGCAGTTATTCGAAACTCAGGCAATTAG</genome_strand>
        <mrna_strand>GAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGATTTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTCCAGCTAATGGAATATGGGGAT---GACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATATGATAATATCAGAGTGTAAGTGATGCTCTATGTAAATTGACTCGTAGAAATTCCNGCAACCTTGTATTTCCATTCAGANAGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGANAATGCCAGCCAGTTTAACCTATTATTTTCTCTCAGTATCANATATGCAGTTATTCGAAACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746184" ref_strand="+" ref_description="SGN-E746184 [GI|47104870]">
      <seq>gattacggattctgaaaaccacaaattcttacaatttgatgaatccaaaatctcaatctgcctgaaaattcaatccttctgccgctccgttgattcagaagaagcgtttcaattgcacgaactagaaatttcttcagcaatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgattccagtcttgggtgctgcttttacgaatcctcttaccactattggtgctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaagaagagattcagaagagcacgggtgctgtggttataactaggggtaaatacaagcctccaagcgcaccttctgatggtgaaaaacccctataccttcatatttctgctggggcacatctagaaacaacacttgagaggatcagagcagttgatcgtgctgctgctgtagtggaggaaatgcttaagcaaggtcctgttaacaatggattaaaggttaatcatctgctgagtacttgtgtatacctgggctttgaggctgatccatcagcaaatattactgtgcgcattcgtggaccaaatgatcagtatataaatcacattatgaatgaaactggagcaactgtcttgctaagaggacgtggttcgggatattcagatgaaggacagggagaagatgttcaccaacctctgcatttactcatatcaagcaataacagtgcaagtcttgagcgtgcgaagcttttggcagaaaatcttttggatactatttgtgcagagtgtggtgcttctagagtctcttcttgtaaggtttatggagctgttccgcctccactgcaaccgttagccagcgttcaggtttctggaagtgaatcagaagtcaataacacacccacagccaatgtagctgcacagattttgagctcctcaactgcagcagcagttcccgtgactgcagctgcaggtgggactggtgttgtttctcagggtacagtacctcaatctctaggctcactagatcctgtgccatctcaacctcccaccagttgttatcctcatcaattagttacaagtagaacaagctatattggctatgatggtatatatccccaagccactgctttgcagcaagttgctttggctcttaggcaatctacttctccagtcacttcaacagttcctccagcaacaacgggaccaagcatcacttcacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactgtaaaccagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcctccaccgccgccgccaccaaagtttcaatcatcctcacagaaagtgcatgataacaatatggttaacaaagcaccaagtaaaattgtaccagatacattagtccagctaatggaatatggggatgacgacgacgacgataatgatgaagcaattgacggacctttgaaaagtagctcaagtgcggtagcgactccaaagccattctgggctgtttaataatatgaccactgcacatctctgaagattttggcaacagctgaatgtgcattataagttgaatggttgttttcaattgacctggaagtggctgtgaaatataaaatatgtacccttccccaccccagcaaaaagatgtggggccaccaaatggaggaaaagaggaaaggagagttctgtagtattgtgccaatatgataatatcagagtgtaagtgatgctctatgtaaaatgactcgtagaaattccgcaaccttgtatttccattcagaagttgtttgctgctggcttgtagtttcactctgaactctttatgaaacaaagaaatgccagcagtttaacctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="24056" stop="15910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23757" g_stop="23545" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="430" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="529" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21854" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="564" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21769" g_stop="21694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="640" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21693" i_stop="20894" i_length="800">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20893" g_stop="20798" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="736" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20797" i_stop="20722" i_length="76">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.592" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20721" g_stop="20635" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="823" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20634" i_stop="20096" i_length="539">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20095" g_stop="20002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="917" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20001" i_stop="19856" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19855" g_stop="19738" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1035" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19737" i_stop="19589" i_length="149">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="19588" g_stop="19072" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1552" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="17322" g_stop="17082" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1553" r_stop="1793" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="16682" g_stop="16211" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1794" r_stop="2262" r_length="469" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2263" polyA_stop="2277"/>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E746184" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2265</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23757" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21854"/>
          <exon e_start="21769" e_stop="21694"/>
          <exon e_start="20893" e_stop="20798"/>
          <exon e_start="20721" e_stop="20635"/>
          <exon e_start="20095" e_stop="20002"/>
          <exon e_start="19855" e_stop="19738"/>
          <exon e_start="19588" e_stop="19072"/>
          <exon e_start="17322" e_stop="17082"/>
          <exon e_start="16682" e_stop="16211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAGGTAGCACACCATGAAGTCTTATTATATTGCTTATTGTTTAGCCTTTATTTACAGTGTGATACTTGTTTATCGTGGCTATTGCAGGGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACATGTAAGCAATTTTAGTTACTTGCATTTGGATGCACCATTTGGTTCAGGAAGATTGCTGATAAAGTTTTGTCCATCACTAAATTGCATAGATGAATCATTTTTCTGTGCATTATTAATTAATTAATACATTTGCCTTAGTGTCAACTTGTTTCTCTGAGTTTGGTTTCTGCGTTTTCTAACCATTGAAGTGGTTACCACCAATATTCTTCTGCTCATCTTCTCTAGTTAAGAGTTCATTTACTGCTATTTTTCCCCCCGTTTTTATCCAATGTATACTACACATGACTGGAGAATCTGGAAATATCTTTTCTCTTAAAAAGCAAAACCCAAAACATATTCCCATCTTCTGAACCTTTTCTACGTTTTTTAAAAAATGTCTACACCTTTCATCTATCCAGCCAAAATTCAGTGTAAATGTTTGACCTGGCAAAGTTAGCGAGAGTTGAAAACATAAAAGTATAAGGTACTAATAACCTTTTGCTATCTTAGGAACAACATCAACAACAACATTACCCAGTGAAATCCCACAAAGTGGGGTCTGGGGATGCTATCTTAGGAACAAAATTAAAGAAAAAAGTTGAGTGGAGAAATGTCTCATTTAAGTTTCAGGCTATCTTTTATTTTATAAAACACTTCTCCATGGGAAAATTGTACTTATCTTGGGTCACACTGATGAAAAAATTGTTATTCATTAAAGTGGGACTTCTCTCTGTAACCTTTTCAAGTTTTATTATTTGACCTCTTACTTTGCTGGGTGAAGTGATTGCTGTGGTGTATTTACATGTACTGTGGTTGATTCAGCTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAGGTAAGTAGTATCTGCTGAGGTTTGACAGGACCTGAAGCCAGAAAATTACTGGAACGTCTGACTCTCTTATCATCAGGTTAATCATCTGCTGAGTACCTGTGTATACCTGGGCTTTGAGGCTGATCCATCAGCAAATATTACTGTGCGCATTCGTGGACCAAATGTGAGCTTTCTTAATCTAACTTTGCTCATTTCTCCTGATTTATTGAGTTATTTTGGTATGTTGCCTATTAAGGGTTAATTTCCTTACATAATTTTCAATTTATGAATTCTCGCATATTTAACTGCATAAAAATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATATGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGGCTAATTATCTTATTTATCTCTTTTGGCATTATGATGCTTGATGTGCTCCTTTAAACTTTATTTTTATTGATAGAAAGCCAAGAGTTTCTAATGTTCTGAGCTCTCTCTGACATCTCCGTCCATTTGGAGAGATTTTCTTCTGTGCTGGTGGTTGGCTTTTTGTAAGTGCAGGATCAGTATATTAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAGGTGCCTATGTGTTGATTAAGATGCAATTATTTTCCCATGCTCCATAGCATGATAAGAATGATTATCAATAGTGTGCCACTGGCTAGATTCCTCAGCTATGAAAAAAGATTAGTTATTCCTCATAAATGTACTCTTTTAACGTGCAGATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAGGTATGCATGTTGCTCTGAGTATATGAAATGTGATTGCAGCCTGTTAACTTTCATTCAGAAGAGGTTTTTGTGGGCTGTTATTTTGTTGTGATTCTTTTTCTTTTGTTGGGCTGTCCTGAATTCTCATATGTGTGACTGTCGATCTGCAGAGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACACGATTGAGTCCAATTTATTCATGTCAACCAATAACTCTTATGATCATGCATTTATTTTGAACTTCCCTTGCCTGCTACTATACAAGTAAAAGAATGTTCTCGAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAGGTATTTGCCATCACTCAAGCTTTTTCAGTCTCAAGATTTCAATGAACTCTTGCTTGGTTTGTCTATTAGCGATGGCCTACCTATCCTCATTACCCCTTTTTTTCTTGCATTTCTTGTTACTAAGTGGAAGTGTGAAAATCCATTGAGTCCTATTAACATAGTAGAACTTATTTTACTTTCTATTTTTATCTTCCACTTCTTATTTTTGTATTATATCAGCATGAAATAAGCTTAAATGGGTGGAAGTTCACTGAAGATCTATACAAGAGACCCCAAGTAGCTTAGGATTGAGGCCTTGTAGTAGTAGTTGTTATCAGACATAACTTGTCTATTTCATTTTTACAGTTGAGAAATATGAGAGTGTTTGTATACTTGTTTGATTTGATTTGTGCATCTCAGATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATCTGATAATATCAGAGTGTAAGTGATGCTCTATGTAAAATGACTCGTAGAAATTCCGCAACCTTGTATTTCCATTCAGAAGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGAAATGCCAGCAGTTTAACCT</genome_strand>
        <mrna_strand>GATTACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAG............................................................................................................ATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAG....................................................................................GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAG............................................................................GTTAATCATCTGCTGAGTACTTGTGTATACCTGGGCTTTGAGGCTGATCCATCAGCAAATATTACTGTGCGCATTCGTGGACCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGTATATAAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAG..................................................................................................................................................ATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAG.....................................................................................................................................................AGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTCCAGCTAATGGAATATGGGGAT---GACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATATGATAATATCAGAGTGTAAGTGATGCTCTATGTAAAATGACTCGTAGAAATTCCGCAACCTTGTATTTCCATTCAGAAGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGAAATGCCAGCAGTTTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212443" ref_strand="+" ref_description="SGN-E212443 [cLEC-74-F18]">
      <seq>catctcaacctcccaccagttgttatcctcatcaattagttacaagtagaacaagctatattggctatgatggtatatatccccaagccactgctttgcagcaagttgctttggctcttaggcaatctacttctccagtcacttcaacagttcctccagcaacaacgggaccaagcatcacttcacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactgtaaaccagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcctccaccgccgccgccaccaaagtttcaatcatcctcacagaaagtgcatgataacaatatggttaacaaagcaccaagtaaaattgtaccagatacattagtccagctaatggaatatggggatgacgacgacgacgataatgatgaagcaattgacggacctttgaaaagtagctcaagtgcggtagcgactccaaagccattctgggctgtttaatatatgaccactgcacatctctgaagattttgggcacagctgaatgtgcattataagttgaatggtttgttttcattgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="19655" stop="16171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19355" g_stop="19072" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17322" g_stop="17082" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="525" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16682" g_stop="16471" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="733" r_length="208" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E212443" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19355" e_stop="19072"/>
          <exon e_start="17322" e_stop="17082"/>
          <exon e_start="16682" e_stop="16471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACACGATTGAGTCCAATTTATTCATGTCAACCAATAACTCTTATGATCATGCATTTATTTTGAACTTCCCTTGCCTGCTACTATACAAGTAAAAGAATGTTCTCGAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAGGTATTTGCCATCACTCAAGCTTTTTCAGTCTCAAGATTTCAATGAACTCTTGCTTGGTTTGTCTATTAGCGATGGCCTACCTATCCTCATTACCCCTTTTTTTCTTGCATTTCTTGTTACTAAGTGGAAGTGTGAAAATCCATTGAGTCCTATTAACATAGTAGAACTTATTTTACTTTCTATTTTTATCTTCCACTTCTTATTTTTGTATTATATCAGCATGAAATAAGCTTAAATGGGTGGAAGTTCACTGAAGATCTATACAAGAGACCCCAAGTAGCTTAGGATTGAGGCCTTGTAGTAGTAGTTGTTATCAGACATAACTTGTCTATTTCATTTTTACAGTTGAGAAATATGAGAGTGTTTGTATACTTGTTTGATTTGATTTGTGCATCTCAGATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTG</genome_strand>
        <mrna_strand>CATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTCCAGCTAATGGAATATGGGGAT---GACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAAT-ATATGACCACTGCACATCTCTGAAGATTTTGGGCACAGCTGAATGTGCATTATAAGTTGAATGGTTTGTTTTCATTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727606" ref_strand="+" ref_description="SGN-E727606 [LA15AG09]">
      <seq>caggtttctggaagtgaatcagaagtcaataacacacccacagccaatgtagctgcacagattttgagctcctcaactgcagcagcagttcccgtgactgcagctgcaggtgggactggtgttgtttctcagggtacagtacctcaatctctaggctcactagatcctgtgccatctcaacctcccaccagttgttatcctcatcaattagttacaagtagaacaagctatattggctatgatggtatatatccccaagccactgctttgcagcaagttgctttggctcttaggcaatctacttctccagtcacttcaacagttcctccagcaacaacgggaccaagcatcacttcacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactgtaaaccagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcctccaccgccgccgccaccaaagtttcaatcatcctcacagaaagtgcatgataacaatatggttaacaaagcaccaagtaaaattgtaccagatacattagtccagctaatggaatatggggatgacgacgacgacgataatgatgaagcaattgacggacctttgaaaagtagctcaagtgcggtagcgactccaaagccattctgggctgtttaataatatgaccactgcacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="19827" stop="16233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19527" g_stop="19072" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17322" g_stop="17082" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="697" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16682" g_stop="16533" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="844" r_length="147" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E727606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19527" e_stop="19072"/>
          <exon e_start="17322" e_stop="17082"/>
          <exon e_start="16682" e_stop="16533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACACGATTGAGTCCAATTTATTCATGTCAACCAATAACTCTTATGATCATGCATTTATTTTGAACTTCCCTTGCCTGCTACTATACAAGTAAAAGAATGTTCTCGAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAGGTATTTGCCATCACTCAAGCTTTTTCAGTCTCAAGATTTCAATGAACTCTTGCTTGGTTTGTCTATTAGCGATGGCCTACCTATCCTCATTACCCCTTTTTTTCTTGCATTTCTTGTTACTAAGTGGAAGTGTGAAAATCCATTGAGTCCTATTAACATAGTAGAACTTATTTTACTTTCTATTTTTATCTTCCACTTCTTATTTTTGTATTATATCAGCATGAAATAAGCTTAAATGGGTGGAAGTTCACTGAAGATCTATACAAGAGACCCCAAGTAGCTTAGGATTGAGGCCTTGTAGTAGTAGTTGTTATCAGACATAACTTGTCTATTTCATTTTTACAGTTGAGAAATATGAGAGTGTTTGTATACTTGTTTGATTTGATTTGTGCATCTCAGATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTC</genome_strand>
        <mrna_strand>CAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTCCAGCTAATGGAATATGGGGAT---GACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321155" ref_strand="+" ref_description="SGN-E321155 [cTOB-13-H5]">
      <seq>aaaaactcaaatcttttacctccttttttcctggaatttctaagttttctggatggactccccctcccccttctggttgacagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcctccaccgccgccgccaccaaagtttcaatcatcctcacagaaagtgcatgataacaatatggttaacaaagcaccaagtaaaattgtaccagatacattagtccagctaatggaatatggggatgacgacgacgacgataatgatgaagcaattgacggacctttgaaaagtagctcaagtgcggtagcgactccaaagccattctgggctgtttaataatatgaccactgcacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="17705" stop="16233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17405" g_stop="17082" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16682" g_stop="16533" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="471" r_length="147" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E321155" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17405" e_stop="17082"/>
          <exon e_start="16682" e_stop="16533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAGGTATTTGCCATCACTCAAGCTTTTTCAGTCTCAAGATTTCAATGAACTCTTGCTTGGTTTGTCTATTAGCGATGGCCTACCTATCCTCATTACCCCTTTTTTTCTTGCATTTCTTGTTACTAAGTGGAAGTGTGAAAATCCATTGAGTCCTATTAACATAGTAGAACTTATTTTACTTTCTATTTTTATCTTCCACTTCTTATTTTTGTATTATATCAGCATGAAATAAGCTTAAATGGGTGGAAGTTCACTGAAGATCTATACAAGAGACCCCAAGTAGCTTAGGATTGAGGCCTTGTAGTAGTAGTTGTTATCAGACATAACTTGTCTATTTCATTTTTACAGTTGAGAAATATGAGAGTGTTTGTATACTTGTTTGATTTGATTTGTGCATCTCAGATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTC</genome_strand>
        <mrna_strand>AAAAACTCAAATCTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTCCAGCTAATGGAATATGGGGAT---GACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336041" ref_strand="+" ref_description="SGN-E336041 [cTOE-12-A19]">
      <seq>aaccgttagccagcgttcaggtttctggaagtgaatcagaagtcaataacacacccacagccaatgtagctgcacagattttgagctcctcaactgcagcagcagttcccgtgactgcagctgcaggtgggactggtgttgtttctcagggtacagtacctcaatctctaggctcactagatcctgtgccatctcaacctcccaccagttgttatcctcatcaattagttacaagtagaacaagctatattggctatgatggtatatatccccaagccactgctttgcagcaagttgctttggctcttaggcaatctacttctccagtcacttcaacagttcctccagcaacaacgggaccaagcatcacttcacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactgtaaaccagaatccactgcaggctacggagcttctaatgcttcaggaacgaatttcagagaaaggtgatacagacaaaattggtattccgactcccagaaagttggttcagcccttatccagttcaatgctgccgccgccacctcctagaatgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="19844" stop="16873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19544" g_stop="19072" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17322" g_stop="17173" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="623" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E336041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19544" e_stop="19072"/>
          <exon e_start="17322" e_stop="17173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACACGATTGAGTCCAATTTATTCATGTCAACCAATAACTCTTATGATCATGCATTTATTTTGAACTTCCCTTGCCTGCTACTATACAAGTAAAAGAATGTTCTCGAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCT</genome_strand>
        <mrna_strand>AACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290248" ref_strand="+" ref_description="SGN-E290248 [cLET-5-F7]">
      <seq>cacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactgtaaaccaggtaatttctctgaccttgtatgaagctaacaggctgcggaactctgttggacctttgtatgtttcacaggattctggatacggaggaggcatggggttgctacgtgcaatttcagtgttatggtgccgatgcaaagatgccatgcccttctggtttaggcattttgttaaatgttaatatgctaatatgaaatgcacatttttaatcaactttgcttcaagtactaaaagggtaatgagatcgagctcacagtacattctgcctgtgaggctttcaaactgtttcaactttactctagaagataaaatgttttctattggtatctgcaatatatgcattttctaaacatgttgatctaagctccttgtaacaagtgagagaaaaaaaagtcaagctgcatcttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="19472" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19172" g_stop="19072" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19071" i_stop="17914" i_length="1158">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17913" g_stop="17507" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="508" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E290248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19172" e_stop="19072"/>
          <exon e_start="17913" e_stop="17507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACAC</genome_strand>
        <mrna_strand>CACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGCGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692602" ref_strand="+" ref_description="SGN-E692602 [LH_Ea09C08]">
      <seq>tcgcctccactgcaaccgttagccagcgttcaggtttctggaagtgaatcagaagtcaataacacacccacagccaatgtagctgcaccgattttgagctcctcgacagcagcagcagttcccatgactgcagctgcaggtgggactggaattgtttctcagggtacagtacctcaatctctaggctcactggatcctgtgccatctcaacctcccaccagttgttatcctcatcaattagttacaagtagaacaagctatattggctatgatggtatatatccccaagccactgctttgcagcaagttgctttggctcttaggcaatctacttctccagtcactacaacagttcctccagcaacaacgggaccaagcatcacttcacagacaagtacaggttctgagaaggacaagcgccctgcacagaagcgtaaatttcaagaattgccggctggtggaaaaggccaagcaactataaaccaggtaatttctctgaccttgtatgaagctaacaggctgtggaactctgttggacctttgtatgtttcacaggattctggatacggaggaggcatggggttgctacgtgcaatttcagttttatggtgccgatgcaaagatgccatgcccttctggtttaggcattctgttaaatgttaatatgctaatatgaaatgcacattattaatcaactttgcttcaagtactaaaagggtaatgagatcgagctcacaatacattctgcctgtgaggctttcaaactgtttcaactttactctagaagatgaaatgttttctattggtatctgcaatatatgcattttctaaacatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="19856" stop="17260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19557" g_stop="19072" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19071" i_stop="17914" i_length="1158">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17913" g_stop="17560" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="840" r_length="354" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E692602" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19557" e_stop="19072"/>
          <exon e_start="17913" e_stop="17560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAGGTATGTGCTTAGTCTCCTTGACCTATACGAAGGTATCTCCAGGCAATTGCCCTTAACTGGCTTTTGATGAGAAAATTATAATGGTCATCTCCGAGTCAAGTACATAAAGCTTCATGATTGATCAGAGACGGGGAATGAATATTGAAAGCATTTCATGTTATAATTTCTGGCATATGAACCTAAACTTGAGTATCCAGAAGTTCCTCTATTATCGCTATCTGCTTGTGGAAGTATCCAACGGGGCACTGGCTGTGCAAAAATTTTTGCTCCAAGCATCCAAGATAAGCCCATCTCTTGGATGAGAACTAAAATGTTAGATGATATCATGTAAACAAAAGAAATAAGATACAAAGGGGGAACTGTAGATATATTAGTACAGCCATTGCTACTGTTCCAACTTAATTTGGTGGAAGATTGAGTGGTACATGTATCACTAATCTGAAATCAAAAACATCTCTAATTACTTCTGTTTAGCCATTCATTGACCACCCACTATGTGGTATCTATCAGATCGACTGCTAGAGTGACAATATAACTGAAGAAAGATGTTGGTTAATGTGAGACAAGTTTCCCCTAGTGGTTGTGACTAGAGGTCACTGAAGTTGTATTGTTTCCCATTCCTCATTTGGAGGGCCTCCACCAAATCACGAAGTTCCTGTGATTTCTCCAAATTTATGCTCTGAAACAAAGCCTTCATAAACATTGGTGCTATGTGGCGTATCTATAGCCTGTGCATCTGCCTTTTTATATCTTAAGTTGTGTCCCTTAATTGCCTTTAATTGATTCTCACTGCTTGAGTGATCTTCTGCACAGGACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATATTCCAGGTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGA</genome_strand>
        <mrna_strand>TCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACCGATTTTGAGCTCCTCGACAGCAGCAGCAGTTCCCATGACTGCAGCTGCAGGTGGGACTGGAATTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTGGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTACAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTATAAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTTTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTCTGTTAAATGTTAATATGCTAATATGAAATGCACATTATTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAATACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATGAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301678" ref_strand="+" ref_description="SGN-E301678 [cLEW-23-P11]">
      <seq>ggaattcggcacgaggactatgctgtgtatatgaattatgatagattcttcacttcaccttccactatataaatggtattaatagaaggatgaagtacaccttgtgtagcatgatgactggcaaaattgggatttatcagattctcttatttttgggtctcttttaaacttagtttaccattcatcctacatcttagtttctattaaaaaaagacttcgttgtctctcattttaaattttcatctcattgctgttgtatatggagcgtttgaaatttctcaaatttcttcccttgagatatttttcagttataaaacatatactcatttctggtctaaccttttctacttgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="18568" stop="17619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18258" g_stop="17919" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="355" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E301678" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18258" e_stop="17919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATAT</genome_strand>
        <mrna_strand>GACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAAAAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTCATTTCTGGTCTAACCTTTTCTACTTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373742" ref_strand="+" ref_description="SGN-E373742 [TUS-31-C6]">
      <seq>attggatcctttgttttttgtgatttactatccatttgccttatcaatttcttttacctatatgctgtgatttgctggcaaatttaaataccgggaagttcattcagctgttacttctctgttatggatcagatattggcatcatgtattctctttattgatcagattatggtctgagtaattatgtgattgtttcttccagtagtttgggtgtagtccattctctaccctgcctggctaattatcttatttatctcttttggcattatgatgcttgatgtgctcctttaaactttatttttattgatagaaagccaagagtttctaatgttctgagctctctctgacatctccgtccatttggagagattttcttctgtgctggtggttggctttttgtaagtgcaggatcagtatataaatcacattatgaatgaaactggagcaactgtcttgctaagaggacgtggttcgggatattcagatgaaggacagggagaagatgttcaccaacctctgcatttactcatatcaagcaataacagtgcaagtcttgagcgtgcgaagcttttggcagaaaatcttttggatactatttgtgcagagtgtggtgcttctagagtctcttcttgtaaggtttatggagctgttccgcctccactgcaaccgttagccagcgttcaagttttctggaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="20803" stop="19210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20503" g_stop="20002" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20001" i_stop="19856" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19855" g_stop="19738" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="620" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19737" i_stop="19589" i_length="149">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19588" g_stop="19510" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="700" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E373742" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20503" e_stop="20002"/>
          <exon e_start="19855" e_stop="19738"/>
          <exon e_start="19588" e_stop="19510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATATGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGGCTAATTATCTTATTTATCTCTTTTGGCATTATGATGCTTGATGTGCTCCTTTAAACTTTATTTTTATTGATAGAAAGCCAAGAGTTTCTAATGTTCTGAGCTCTCTCTGACATCTCCGTCCATTTGGAGAGATTTTCTTCTGTGCTGGTGGTTGGCTTTTTGTAAGTGCAGGATCAGTATATTAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAGGTGCCTATGTGTTGATTAAGATGCAATTATTTTCCCATGCTCCATAGCATGATAAGAATGATTATCAATAGTGTGCCACTGGCTAGATTCCTCAGCTATGAAAAAAGATTAGTTATTCCTCATAAATGTACTCTTTTAACGTGCAGATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAGGTATGCATGTTGCTCTGAGTATATGAAATGTGATTGCAGCCTGTTAACTTTCATTCAGAAGAGGTTTTTGTGGGCTGTTATTTTGTTGTGATTCTTTTTCTTTTGTTGGGCTGTCCTGAATTCTCATATGTGTGACTGTCGATCTGCAGAGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTC-AGGTTTCTGGAAGTGAA</genome_strand>
        <mrna_strand>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATGTGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGGCTAATTATCTTATTTATCTCTTTTGGCATTATGATGCTTGATGTGCTCCTTTAAACTTTATTTTTATTGATAGAAAGCCAAGAGTTTCTAATGTTCTGAGCTCTCTCTGACATCTCCGTCCATTTGGAGAGATTTTCTTCTGTGCTGGTGGTTGGCTTTTTGTAAGTGCAGGATCAGTATATAAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAG..................................................................................................................................................ATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAG.....................................................................................................................................................AGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAAGTTTTCTGGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289270" ref_strand="+" ref_description="SGN-E289270 [cLES-18-M10]">
      <seq>attggatcctttgttttttgtgatttactatccatttgccttatcaatttcttttacctatatgctgtgatttgctggcaaatttaaataccgggaagttcattcagctgttacttctctgttatggatcagatattggcatcatgtattctctttattgatcagattatggtctgagtaattatgtgattgtttcttccagtagtttgggtgtagtccattctctaccctgcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="20803" stop="19967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20503" g_stop="20267" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E289270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20503" e_stop="20267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATATGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGG</genome_strand>
        <mrna_strand>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATGTGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724535" ref_strand="+" ref_description="SGN-E724535 [FC24BF06]">
      <seq>acggattctgaaaaccacaaattcttacaatttgatgaatccaaaatctcaatctgcctgaaaattcaatccttctgccgctccgttgattcaaaaaaagcgtttcaattgcacgaactaaaaatttcttcagcaatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgattccagtcttgggtgctgcttttacaaatcctcttaccactattggggctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaagaagagattcaaaagagcacgggtgctgtggttataactaggggtaaatacaagcctccaagcgcaccttctgatggtgaaaaacccctataccttcatatttctgctggggcacatctagaaacaacacttgagaggatcagagcagttgatcgtgctgctgctgtagtggaggaaatgcttaagcaaggtcctgttaacaatggattaaaggttaatcatctgctgagtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="24053" stop="20400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23753" g_stop="23545" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="426" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="525" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21854" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="560" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21769" g_stop="21694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="636" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21693" i_stop="20894" i_length="800">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20893" g_stop="20798" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="732" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20797" i_stop="20722" i_length="76">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20721" g_stop="20700" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="754" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E724535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23753" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21854"/>
          <exon e_start="21769" e_stop="21694"/>
          <exon e_start="20893" e_stop="20798"/>
          <exon e_start="20721" e_stop="20700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAGGTAGCACACCATGAAGTCTTATTATATTGCTTATTGTTTAGCCTTTATTTACAGTGTGATACTTGTTTATCGTGGCTATTGCAGGGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACATGTAAGCAATTTTAGTTACTTGCATTTGGATGCACCATTTGGTTCAGGAAGATTGCTGATAAAGTTTTGTCCATCACTAAATTGCATAGATGAATCATTTTTCTGTGCATTATTAATTAATTAATACATTTGCCTTAGTGTCAACTTGTTTCTCTGAGTTTGGTTTCTGCGTTTTCTAACCATTGAAGTGGTTACCACCAATATTCTTCTGCTCATCTTCTCTAGTTAAGAGTTCATTTACTGCTATTTTTCCCCCCGTTTTTATCCAATGTATACTACACATGACTGGAGAATCTGGAAATATCTTTTCTCTTAAAAAGCAAAACCCAAAACATATTCCCATCTTCTGAACCTTTTCTACGTTTTTTAAAAAATGTCTACACCTTTCATCTATCCAGCCAAAATTCAGTGTAAATGTTTGACCTGGCAAAGTTAGCGAGAGTTGAAAACATAAAAGTATAAGGTACTAATAACCTTTTGCTATCTTAGGAACAACATCAACAACAACATTACCCAGTGAAATCCCACAAAGTGGGGTCTGGGGATGCTATCTTAGGAACAAAATTAAAGAAAAAAGTTGAGTGGAGAAATGTCTCATTTAAGTTTCAGGCTATCTTTTATTTTATAAAACACTTCTCCATGGGAAAATTGTACTTATCTTGGGTCACACTGATGAAAAAATTGTTATTCATTAAAGTGGGACTTCTCTCTGTAACCTTTTCAAGTTTTATTATTTGACCTCTTACTTTGCTGGGTGAAGTGATTGCTGTGGTGTATTTACATGTACTGTGGTTGATTCAGCTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAGGTAAGTAGTATCTGCTGAGGTTTGACAGGACCTGAAGCCAGAAAATTACTGGAACGTCTGACTCTCTTATCATCAGGTTAATCATCTGCTGAGTACCT</genome_strand>
        <mrna_strand>ACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAAAAAAAGCGTTTCAATTGCACGAACTAAAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACAAATCCTCTTACCACTATTGGGGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAG............................................................................................................ATTCAAAAGAGCACGGGTGCTGTGGTTATAACTAG....................................................................................GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAG............................................................................GTTAATCATCTGCTGAGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328426" ref_strand="+" ref_description="SGN-E328426 [cTOC-21-N19]">
      <seq>acggattctgaaaaccacaaattcttacaatttgatgaatccaaaatctcaatctgcctgaaaattcaatccttctgccgctccgttgattcagaagaagcgtttcaattgcacgaactagaaatttcttcagcaatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgattccagtcttgggtgctgcttttacgaatcctcttaccactattggtgctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaagaagagattcagaagagcacgggtgctgtggttataactaggggtaaatacaagcctccaagcgcaccttctgatggtgaaaaacccctataccttcatatttctgctggggcacatctagaaacaacacttgagaagatcagagcagttgatcgtgctgctgctgtantggaggaaatgctaagcaaggtccctgttacatggattaaagggtatcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="24053" stop="20495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23753" g_stop="23545" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="426" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="525" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21854" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="560" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21769" g_stop="21694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="636" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21693" i_stop="20894" i_length="800">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20893" g_stop="20798" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="730" r_length="94" r_score="0.917"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20797" i_stop="20722" i_length="76">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20721" g_stop="20709" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="742" r_length="12" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E328426" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23753" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21854"/>
          <exon e_start="21769" e_stop="21694"/>
          <exon e_start="20893" e_stop="20798"/>
          <exon e_start="20721" e_stop="20709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAGGTAGCACACCATGAAGTCTTATTATATTGCTTATTGTTTAGCCTTTATTTACAGTGTGATACTTGTTTATCGTGGCTATTGCAGGGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACATGTAAGCAATTTTAGTTACTTGCATTTGGATGCACCATTTGGTTCAGGAAGATTGCTGATAAAGTTTTGTCCATCACTAAATTGCATAGATGAATCATTTTTCTGTGCATTATTAATTAATTAATACATTTGCCTTAGTGTCAACTTGTTTCTCTGAGTTTGGTTTCTGCGTTTTCTAACCATTGAAGTGGTTACCACCAATATTCTTCTGCTCATCTTCTCTAGTTAAGAGTTCATTTACTGCTATTTTTCCCCCCGTTTTTATCCAATGTATACTACACATGACTGGAGAATCTGGAAATATCTTTTCTCTTAAAAAGCAAAACCCAAAACATATTCCCATCTTCTGAACCTTTTCTACGTTTTTTAAAAAATGTCTACACCTTTCATCTATCCAGCCAAAATTCAGTGTAAATGTTTGACCTGGCAAAGTTAGCGAGAGTTGAAAACATAAAAGTATAAGGTACTAATAACCTTTTGCTATCTTAGGAACAACATCAACAACAACATTACCCAGTGAAATCCCACAAAGTGGGGTCTGGGGATGCTATCTTAGGAACAAAATTAAAGAAAAAAGTTGAGTGGAGAAATGTCTCATTTAAGTTTCAGGCTATCTTTTATTTTATAAAACACTTCTCCATGGGAAAATTGTACTTATCTTGGGTCACACTGATGAAAAAATTGTTATTCATTAAAGTGGGACTTCTCTCTGTAACCTTTTCAAGTTTTATTATTTGACCTCTTACTTTGCTGGGTGAAGTGATTGCTGTGGTGTATTTACATGTACTGTGGTTGATTCAGCTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAGGTAAGTAGTATCTGCTGAGGTTTGACAGGACCTGAAGCCAGAAAATTACTGGAACGTCTGACTCTCTTATCATCAGGTTAATCATCTGC</genome_strand>
        <mrna_strand>ACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAG............................................................................................................ATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAG....................................................................................GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAACAACACTTGAGAAGATCAGAGCAGTTGATCGTGCTGCTGCTGTANTGGAGGAAATGC-TAAGCAAGGTCCCTGTTAC-ATGGATTAAAG............................................................................GGT-ATCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205494" ref_strand="+" ref_description="SGN-E205494 [cLEC-28-F3]">
      <seq>aatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgattccagtcttgggtgctgcttttacgaatcctcttaccactattggtgctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaagaagagattcagaagagcacgggtgctgtggttataactaggggtaaatacaagcctccaagcgcaccttctgatggtgaaaaacccctataccttcatatttctgctggggcacatctagaaacaacacttgagaggatcagagcagttgatcgtgctgctgctgtagtggaggaaatgcttaagcaaggtcctgttaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="23919" stop="20506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23619" g_stop="23545" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="292" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="391" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21854" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="426" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21769" g_stop="21694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="502" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21693" i_stop="20894" i_length="800">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20893" g_stop="20806" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="590" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E205494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23619" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21854"/>
          <exon e_start="21769" e_stop="21694"/>
          <exon e_start="20893" e_stop="20806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAGGTAGCACACCATGAAGTCTTATTATATTGCTTATTGTTTAGCCTTTATTTACAGTGTGATACTTGTTTATCGTGGCTATTGCAGGGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACATGTAAGCAATTTTAGTTACTTGCATTTGGATGCACCATTTGGTTCAGGAAGATTGCTGATAAAGTTTTGTCCATCACTAAATTGCATAGATGAATCATTTTTCTGTGCATTATTAATTAATTAATACATTTGCCTTAGTGTCAACTTGTTTCTCTGAGTTTGGTTTCTGCGTTTTCTAACCATTGAAGTGGTTACCACCAATATTCTTCTGCTCATCTTCTCTAGTTAAGAGTTCATTTACTGCTATTTTTCCCCCCGTTTTTATCCAATGTATACTACACATGACTGGAGAATCTGGAAATATCTTTTCTCTTAAAAAGCAAAACCCAAAACATATTCCCATCTTCTGAACCTTTTCTACGTTTTTTAAAAAATGTCTACACCTTTCATCTATCCAGCCAAAATTCAGTGTAAATGTTTGACCTGGCAAAGTTAGCGAGAGTTGAAAACATAAAAGTATAAGGTACTAATAACCTTTTGCTATCTTAGGAACAACATCAACAACAACATTACCCAGTGAAATCCCACAAAGTGGGGTCTGGGGATGCTATCTTAGGAACAAAATTAAAGAAAAAAGTTGAGTGGAGAAATGTCTCATTTAAGTTTCAGGCTATCTTTTATTTTATAAAACACTTCTCCATGGGAAAATTGTACTTATCTTGGGTCACACTGATGAAAAAATTGTTATTCATTAAAGTGGGACTTCTCTCTGTAACCTTTTCAAGTTTTATTATTTGACCTCTTACTTTGCTGGGTGAAGTGATTGCTGTGGTGTATTTACATGTACTGTGGTTGATTCAGCTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATG</genome_strand>
        <mrna_strand>AATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAG............................................................................................................ATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAG....................................................................................GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364720" ref_strand="+" ref_description="SGN-E364720 [cLPT-4-A12]">
      <seq>tttagaagaagcgtttcaattgcacgaactagaaatttcttcatcaatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgatgccagtcttgggtgctgcttttacgaatcctcttaccgctattggtgctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaggaagagattcagaagagcacgggtgctgtggttataactaggggtaaatacaagcctccaagcgcaccttctgatggtgaaaaacccctataccttcatatttctgctggggcacatctagaaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="23964" stop="21386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23664" g_stop="23545" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="337" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="436" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21854" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="471" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21769" g_stop="21694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="547" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E364720" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23664" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21854"/>
          <exon e_start="21769" e_stop="21694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAGGTAGCACACCATGAAGTCTTATTATATTGCTTATTGTTTAGCCTTTATTTACAGTGTGATACTTGTTTATCGTGGCTATTGCAGGGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT</genome_strand>
        <mrna_strand>TTTAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCATCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATGCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCGCTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAGGAAGAG............................................................................................................ATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAG....................................................................................GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367134" ref_strand="+" ref_description="SGN-E367134 [cLPT-5-J5]">
      <seq>gattctgaaaaccacaaattcttacaatttgatgaatccaaaatctcaatctgcctgaaaattcaatccttctgccgctccgttgatttagaagaagcgtttcaattgcacgaactagaaatttcttcatcaatgacggaggataattgccctagagtttcatcttctgaaaccgtagactccaattcttcatcgacgaagcaaaggaaacggagaaagtgggatcagcctgcggagacattcgttccagaaggggtagcggtatctgggatttttccattggcaaatactggttctcttgctggtatcacactacctggcgtgatgccagtcttgggtgctgcttttacgaatcctcttaccgctattggtgctactacagtgcagcagcttcctgtaattattgcccaaaaatcagttcaaccgaaaattcaggatgagttgatagcaagagaaattgtcattaatgatgctgatccgtctgttcgctacaggctcacaaagcgccaaacacaggaagagattcagaagagcacgggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="24050" stop="21568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23750" g_stop="23545" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22729" g_stop="22513" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="423" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22095" g_stop="21997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="522" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21888" g_stop="21868" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="543" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E367134" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23750" e_stop="23545"/>
          <exon e_start="22729" e_stop="22513"/>
          <exon e_start="22095" e_stop="21997"/>
          <exon e_start="21888" e_stop="21868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAGGTGCATAAAATTTAATCTTAGCTTTTTTTGAAGGCAAATCACTTCAATTGAGATCTAAATTCCCCTTAATATCACCGACTTAGGTCAGAATCAATAGTTTTGATTCATTGTATCTACATTCACTAGTTTGGGATTGAGATAAGTTGATTCATATATTGATTGGTCCCCTCTACTTTTTTTTTGCTGAGAATCCCTTTCCGGAATCCTATTAGCTCAGCTGGTATCATGTGTTAGTAGAATACTACTTTGATTTCTTTCTAAAAAGTAGAAACGAACAGTTACCTAGTTTTAATTAAGCTGCCATGATTAGATACGGGTTTGACCTAACTCAGTAATTAACTTTGGTCCAAACTTTTTTGGCTGAGGAGTTGGATTTTTTGTGTTTATTGAGTTCGTGGTTTCACATGACTCTCTCGCATGATTTTAATCCTTTTGATGTATTATTGGTTCCATGAGTTTGTCAATGTCCTTTTTGCTCTGATGCTAAATTGAAAAAGTTCAGAAACTGAATTAGTACTTTGTTGAGATGAAACTGTTACTCTGCGGGAAGAAGCAGCATTGAGGTGAGGGCAGTAGTAGTATCTTCACCGGGAAGGTTAGCTGTTTTTTAGGAATTTAGAGAATCTGGGTGACTTAATGAATATTAGCTGGTTTGTTAGCATTATGCTGCAGAAGAGGAAAGAGAAATAAGAAACAATAACATACACAATTTGATTGATTGATTAATTAATATTAGAAAAATGATGAGAGACAGCTTTGTAGTCTAATAAGAAGAGTAAGCTCTTCTGGTGGTATAACTTTTCAACATCTTCCAGGAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAAGTAAGATCATCAGAGAAGATGCTGCTTATTATTTTCTAGTTTGGAAGTATTCCCCTATTACATGAGGGTTGTCACCTAGCTGTAGTAGTTATTATCCAAATGCATGATTTACATTCTCCCAATAATTGCTTTTCTTCCTTTTCTTTGTCGGTGGAAGAAATTGTTTTGTTGTCAGTAAGCGTTGCCCAATTATCTGCCTCCTTATATCATCATCAAAAAGAAAAAGTTCTCTGGTTCACTTCCTGCAGTTGTCTTACTGCAAATTAACAGTTAATGTGTTTGTTACCCATCCTAGGAAATTATACTGAATCAGGCATGTTCTTCGTGTCATTTTTCTATTACCCTTCTACGAAATGCTGTTTAGAATCATCTGTTTTTTGTTTGGATCGCTTCTGATTTTCCAATGAGCTATTGCAGCCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAGGTGAATATTGTTAATGGGTTTTGTAAGACTAAAGATGACTCGAAAAGCAAATGTGATTATCTTAAGGTTATGCTCATTATTATTGATCAGTTATCACTGTTTCTGCAGATTCAGAAGAGCACGGGTGCT</genome_strand>
        <mrna_strand>GATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTTAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCATCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATGCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCGCTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAGGAAGAG............................................................................................................ATTCAGAAGAGCACGGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739535" ref_strand="+" ref_description="SGN-E739535 [LC17DD04]">
      <seq>gcaactgctttgtgctccgccatagtgctgtacattcagctccccttcaatattcatccattttagttcgctttcagccttttgagagatctgaaaattcaatgagggctcttcgtttgagcgatttcgagtatcaaacatcttctgattgagttcatatcgaattatgaagctttgaatttgattacctagtgaagatatgggcacaagcacattaccagatgcattatttggatctgttcaacagcacactattatttcttcacgcagacaccatgaccctattcgatttgttgctgttaagtcgcattccacgatctatagaaggcgttctgttgggaaaagagttctgttcgcggatgcctgcctctgcaaaccaagacatgttgttttctcgagcatggatgattcaactgaagctctcacagatgatgaggatggtgattcattagggaggagtaaagttgtagggattgatgatgatgaactgttggcaactaggaaatctctatctgatgttcaagccagaaataaaaccattgaaaaggaaagagatcaattgcttgaaaaggtagctcggtctgaggctaaacagaaggagtatttgtccaccgtaatgcatgataaggatttggccatatcagaactagagtcagccaaagctctatttaaccgtaagctagaagagtctttggaggagaaatttaacttggaatctaagttggtcctggcaaaacaagatgctgttgaacttgcggttcaagttgagaagcttgctgagattgcttttcagcaggcaacttctcacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="28237" stop="30872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28535" g_stop="28727" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28728" i_stop="29767" i_length="1040">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29768" g_stop="29919" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="345" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29920" i_stop="29999" i_length="80">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30000" g_stop="30057" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="403" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30058" i_stop="30162" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30163" g_stop="30572" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="813" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E739535" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28535" e_stop="28727"/>
          <exon e_start="29768" e_stop="29919"/>
          <exon e_start="30000" e_stop="30057"/>
          <exon e_start="30163" e_stop="30572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGCTTTGTGCTCCGCCAGAGTGCTGTACATTCAGCTCCCCTTCAATATTCATCCATTTTAGTTCGCTTTCAGCCTTTTGAGAGATCTGAAAATTCAATGAGGGCTCTTCGTTTGAGCGATTTCGAGTATCAAACATCTTCTGATTGAGTTCATATCGAATTATGAAGCTTTGAATTTGATTACCTAGTGTTAGTATTATTTGTGTCTTTCTTATTTTGCTGCATCGCCATTGTTCTTTTTTACCCGTTTTATCTTCATGTTCTTCTTCAGTAGTCTTACATTATTGTTATGCTTGTTCAACAGGTTTAATTTACTTTTATTTGAAGCAAGTATGTTTATGGAATAAAATGGTCCTGAACAGAGCAGAGTGGATACAAAGGAATGAAAGAATTTAAGATTCATAGCTTGTGTATGATCAATAGCCTATAACATTAATGTCATAATTGACGTTAGGATCTTACATTATGGTTATGCTGTTCAACAGGTTCAATTTAATTTGTTGAAGTAGTATGTTTGTGGAACGAAATAGGCCTGATAGAGGAGAGTGGATACAAAGGAGTGAAGGAAATTGAAGATTCATAGCTTGTATATGATCAATAGTCTTTTGACATTAATGTCATAATTGACTTTAGGATCTTACATTATGGTTATGCTGTTCAACAGGTTTAATTTAATTTGTTGAAGTAGTATGTTTATGGAATGAAATGGGCCTAATAGAGGAGAGTGGATACAAAGAAATGAAGGAAATTGAAGATTCATAGCTTGTATATGATCAATAGTCTTTTGACATTAATGTCATAATTGACTTTAGGATCTTTGAAGAAAACTAATGTAGCTTGGAAGTGTACCTTGATTTCTTATAAGTCCCGGAGATCATATCATTACTTGAAACTGGTTGAGTACGGATATTTCTCGTTGGGTAACTTGAGAAATAGTATCCTTTGTGTATCATTTTCTTAGAAGTTAGCTTTAGTTAATAACAGAAATAACTAATCTTATGTTGACCAATAAGAGTTTAGCTCTGAATGTACTTATATATCAAAACCAAGTAACTAATGAACCAAATCAGAATAAGTGCAGTTCCACAACAAATTATTATGTCGGAGTTATGCCATAGAACTTTCATGTAAACAACCCCAACAAGATTGGGATTGAGTTGTAGTAGATTGATTGATTGATGTCATGTTTGTGGAATTGGCCCTTTTATAAATTAGTGATCTCTTGACAGGAAGATATGGGCACAAGCACATTACCAGATGCATTATTTGGATCTGTTCAACAGCACACTATTATTTCTTCACGCAGACACCATGACCCTATTCGATTTGTTGCTGTTAAGTCGCATTCCACGATCTATAGAAGGCGTTCTGTTGGGAAAAGGTTTGATATTATTGTACTGTACAAAGTTTAAAACTTTAGTGATGCAAATAAGGTTAATGGTGACGGTCTTATTATTTCAGAGTTCTGTTCGCGGATGCCTGCCTCTGCAAACCAAGACATGTTGTTTTCTCGAGCATGGTTTACATTTCTATGCCTTCTATCAGTATCATTTTTTTTATTTAACTGAGTTGGGCATTGCCGTATGGGCAACTACTACGATTGAAACTTACTTTGTTACTTCAGGATTATTCAACTGAAGCTCTCACAGATGATGAGGATGGTGATTCATTAGGGAGGAGTAAAGTTGTAGGGATTGATGATGATGAACTGTTGGCAACTAGGAAATCTCTATCTGATGTTCAAGCCAGAAATAAAACCATTGAAAAGGAAAGAGATCAATTGCTTGAAAAGGTAGCTCGGTCTGAGGCTAAACAGAAGGAGTATTTGTCCACCGTAATGCATGATAAGGATTTGGCCATATCAGAACTAGAGTCAGCCAAAGCTCTATTTAACCGTAAGCTAGAAGAGTCTTTGGAGGAGAAATTTAACTTGGAATCTAAGTTGGTCCTGGCAAAACAAGATGCTGTTGAACTTGCGGTTCAAGTTGAGAAGCTTGCTGAGATTGCTTTTCAGCAGGCAACTTCTCACATACT</genome_strand>
        <mrna_strand>GCAACTGCTTTGTGCTCCGCCATAGTGCTGTACATTCAGCTCCCCTTCAATATTCATCCATTTTAGTTCGCTTTCAGCCTTTTGAGAGATCTGAAAATTCAATGAGGGCTCTTCGTTTGAGCGATTTCGAGTATCAAACATCTTCTGATTGAGTTCATATCGAATTATGAAGCTTTGAATTTGATTACCTAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATGGGCACAAGCACATTACCAGATGCATTATTTGGATCTGTTCAACAGCACACTATTATTTCTTCACGCAGACACCATGACCCTATTCGATTTGTTGCTGTTAAGTCGCATTCCACGATCTATAGAAGGCGTTCTGTTGGGAAAAG................................................................................AGTTCTGTTCGCGGATGCCTGCCTCTGCAAACCAAGACATGTTGTTTTCTCGAGCATG.........................................................................................................GATGATTCAACTGAAGCTCTCACAGATGATGAGGATGGTGATTCATTAGGGAGGAGTAAAGTTGTAGGGATTGATGATGATGAACTGTTGGCAACTAGGAAATCTCTATCTGATGTTCAAGCCAGAAATAAAACCATTGAAAAGGAAAGAGATCAATTGCTTGAAAAGGTAGCTCGGTCTGAGGCTAAACAGAAGGAGTATTTGTCCACCGTAATGCATGATAAGGATTTGGCCATATCAGAACTAGAGTCAGCCAAAGCTCTATTTAACCGTAAGCTAGAAGAGTCTTTGGAGGAGAAATTTAACTTGGAATCTAAGTTGGTCCTGGCAAAACAAGATGCTGTTGAACTTGCGGTTCAAGTTGAGAAGCTTGCTGAGATTGCTTTTCAGCAGGCAACTTCTCACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737490" ref_strand="+" ref_description="SGN-E737490 [LC10AC02]">
      <seq>tgcaggaattcggcacgaggtgaagatatgggcacaagcacattaccagatgcattatttggatctgttcaacagcacactattatttcttcacgcagacaccatgaccctattcgatttgttgctgttaagtcgcattccacgatctatagaaggcgttctgttgggaaaagagttctgttcgcggatgcctgcctctgcaaaccaagacatgttgttttctcgagcatggatgattcaactgaagctctcacagatgatgaggatggtgattcattagggaggagtaaagttgtagggattgatgatgatgaactgttggcaactaggaaatctctatctgatgttcaagccagaaataaaaccattgaaaaggaaagagatcaattgcttgaaaaggtagctcggtctgaggctaaacagaaggagtatttgtccaccgtaatgcatgataaggatttggccatatcagaactagagtcagccaaagctctatttaaccgtaagctagaagagtctttggaggagaaatttaacttggaatctaagttggtcctggcaaaacaagatgctgttgaacttgcggttcaagttgagaagcttgctgagattgcttttcagcaggcaacttctcacatactcgaagatgcacaattacgagtttcagctgctgaagcttctgcagcagaggctgcttttcaaattgaagaacaaataaggactgcctctgacggggccataacctatgttctacaacagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="29464" stop="30994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29768" g_stop="29919" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="173" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29920" i_stop="29999" i_length="80">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30000" g_stop="30057" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="231" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30058" i_stop="30162" i_length="105">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30163" g_stop="30694" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="763" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E737490" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29768" e_stop="29919"/>
          <exon e_start="30000" e_stop="30057"/>
          <exon e_start="30163" e_stop="30694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATATGGGCACAAGCACATTACCAGATGCATTATTTGGATCTGTTCAACAGCACACTATTATTTCTTCACGCAGACACCATGACCCTATTCGATTTGTTGCTGTTAAGTCGCATTCCACGATCTATAGAAGGCGTTCTGTTGGGAAAAGGTTTGATATTATTGTACTGTACAAAGTTTAAAACTTTAGTGATGCAAATAAGGTTAATGGTGACGGTCTTATTATTTCAGAGTTCTGTTCGCGGATGCCTGCCTCTGCAAACCAAGACATGTTGTTTTCTCGAGCATGGTTTACATTTCTATGCCTTCTATCAGTATCATTTTTTTTATTTAACTGAGTTGGGCATTGCCGTATGGGCAACTACTACGATTGAAACTTACTTTGTTACTTCAGGATTATTCAACTGAAGCTCTCACAGATGATGAGGATGGTGATTCATTAGGGAGGAGTAAAGTTGTAGGGATTGATGATGATGAACTGTTGGCAACTAGGAAATCTCTATCTGATGTTCAAGCCAGAAATAAAACCATTGAAAAGGAAAGAGATCAATTGCTTGAAAAGGTAGCTCGGTCTGAGGCTAAACAGAAGGAGTATTTGTCCACCGTAATGCATGATAAGGATTTGGCCATATCAGAACTAGAGTCAGCCAAAGCTCTATTTAACCGTAAGCTAGAAGAGTCTTTGGAGGAGAAATTTAACTTGGAATCTAAGTTGGTCCTGGCAAAACAAGATGCTGTTGAACTTGCGGTTCAAGTTGAGAAGCTTGCTGAGATTGCTTTTCAGCAGGCAACTTCTCACATACTCGAAGATGCACAATTACGAGTTTCAGCTGCTGAAGCTTCTGCAGCAGAGGCTGCTTTTCAAATTGAAGAACAAATAAGGACTGCCTCTGACGGGGCCATAACCTATGTTCTACAACAGTCTA</genome_strand>
        <mrna_strand>GAAGATATGGGCACAAGCACATTACCAGATGCATTATTTGGATCTGTTCAACAGCACACTATTATTTCTTCACGCAGACACCATGACCCTATTCGATTTGTTGCTGTTAAGTCGCATTCCACGATCTATAGAAGGCGTTCTGTTGGGAAAAG................................................................................AGTTCTGTTCGCGGATGCCTGCCTCTGCAAACCAAGACATGTTGTTTTCTCGAGCATG.........................................................................................................GATGATTCAACTGAAGCTCTCACAGATGATGAGGATGGTGATTCATTAGGGAGGAGTAAAGTTGTAGGGATTGATGATGATGAACTGTTGGCAACTAGGAAATCTCTATCTGATGTTCAAGCCAGAAATAAAACCATTGAAAAGGAAAGAGATCAATTGCTTGAAAAGGTAGCTCGGTCTGAGGCTAAACAGAAGGAGTATTTGTCCACCGTAATGCATGATAAGGATTTGGCCATATCAGAACTAGAGTCAGCCAAAGCTCTATTTAACCGTAAGCTAGAAGAGTCTTTGGAGGAGAAATTTAACTTGGAATCTAAGTTGGTCCTGGCAAAACAAGATGCTGTTGAACTTGCGGTTCAAGTTGAGAAGCTTGCTGAGATTGCTTTTCAGCAGGCAACTTCTCACATACTCGAAGATGCACAATTACGAGTTTCAGCTGCTGAAGCTTCTGCAGCAGAGGCTGCTTTTCAAATTGAAGAACAAATAAGGACTGCCTCTGACGGGGCCATAACCTATGTTCTACAACAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366136" ref_strand="+" ref_description="SGN-E366136 [cLPT-15-F12]">
      <seq>ttcaacggaagacagttaaatggcaaagaactccagaagaaacaaaattaggtgcagctattcataatctgggacgggtactggacgacagattgcggtcagtaataccagctttcattttgatttgttttctgtataaaagtaattttattaacaatagcagtacaagggggtactgcaaagtacaaaaagaagctggacagtatacaaatattatacaatagcggactcaaacaagtccagaaactcagatgtgctgaatacaggatttccactatgccaatactctctgtaaacacttgtatcttacataggaaatcatctcttttttccctagaaacatcttctatttctttctcgtgatacttcccaaatgatgcataaagttatcaattttcatatctattatcttaaaataaaatcctttaagaatattttactgtcttgaaaagttatatggaaccacgtttattctttgcaaaaaaacttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="31316" stop="32499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31616" g_stop="31680" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31681" i_stop="31766" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31767" g_stop="32199" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="493" r_length="428" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E366136" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31616" e_stop="31680"/>
          <exon e_start="31767" e_stop="32199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACGGAAGACAGTTAAATGGCAAAGAACTCCAGAAGAAACAAAATTAGGTGCAGCTATTCATGTCGGATGATCTTACTTTATTTTACTTGCGAATCAGTGTTCCTAAGCGAAATGCTTAATCATTATAATATGACTTGTTGCATGCAGAATCAGGGACGGGTACTGGACGAGAGATTGTGGTCAGTAATACCAGCTTTCATTTTGATCTTTTTTCTGTATAAGATAAAAGTAATTTTATTAACAATAGCAGTACAAGGGGGTACTGCAAAGTACAAAAAGAAGCTGGACAGTATACAAATATTATACAATAGCGAACTCAAACAAGTCCAGAAACTCAGTTGTGGTGAATACAGGATTTCCACTATGCCAATACTCTCTGTAAACACTTGTATCTTACATAGGAAATCATCTCTTTTTTCCCTAGAAACATCTTCTATTTCTCTCTCGTGATACTTCCCAAATGATGTATAAAGTTATCAATTTCCATATCTATTATCTTAAAATAAAATCCTTTGAGAATATTTTACTGTCTTGGAAAGTTATATGGAACCACGTTTATTCTTTGCAAAAAAACTTAAAC</genome_strand>
        <mrna_strand>TTCAACGGAAGACAGTTAAATGGCAAAGAACTCCAGAAGAAACAAAATTAGGTGCAGCTATTCAT......................................................................................AATCTGGGACGGGTACTGGACGACAGATTGCGGTCAGTAATACCAGCTTTCATTTTGATTTGTTTTCTG--T---ATAAAAGTAATTTTATTAACAATAGCAGTACAAGGGGGTACTGCAAAGTACAAAAAGAAGCTGGACAGTATACAAATATTATACAATAGCGGACTCAAACAAGTCCAGAAACTCAGATGTGCTGAATACAGGATTTCCACTATGCCAATACTCTCTGTAAACACTTGTATCTTACATAGGAAATCATCTCTTTTTTCCCTAGAAACATCTTCTATTTCTTTCTCGTGATACTTCCCAAATGATGCATAAAGTTATCAATTTTCATATCTATTATCTTAAAATAAAATCCTTTAAGAATATTTTACTGTCTTGAAAAGTTATATGGAACCACGTTTATTCTTTGCAAAAAAACTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548486" ref_strand="+" ref_description="SGN-E548486 [TUS-61-K8]">
      <seq>gttcgttggaagagcttaaaggctgtatagaagagatgcataaccaagatcttctggccttaggagatgtcgttttgaaccatcgatgtgctcacaaacagagtccgaatggtgtttggaacatttttggaggcaagcttgcatggggacctgaagcaattgtgtgtgatgacccaaattttcaaggccgtggaaatccttcaagtggtgatatatttcatgccgcaccaaatattgatcattcccaggaatttgtacgacaagatataaaaaagtggctaaattggctccgaaatgatgttggttttgatgggtggcgccttgactttgttaggggcttctcaggagcatatgtgaaagaatatatagaagcatcaaatccagcattttctattggcgagtattgggatagtctcgcttatgaaggtggaaatttgtgttacaaccaagatgcccatcgccaacgcataattaactggatcaatgctactggtgggagctcttcagcattcgatgtcacaacaaagggtatactgcattctgctttgcataaccaatattggaggttaattgatcctcaaggcaagccaaccggagtgatgggatggtggccctcacgtgctgtcacatttttggagaatcatgatactggatccacacagggccactggccatttcctcgggacaagcttactcaaggatatgcatatattttaacccaccctggaacgcctgtaatattttacgatcatttctatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="32943" stop="41205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33243" g_stop="33298" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33299" i_stop="33674" i_length="376">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33675" g_stop="33719" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="101" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33720" i_stop="34696" i_length="977">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34697" g_stop="34802" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="207" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34803" i_stop="36198" i_length="1396">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36199" g_stop="36325" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="334" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36326" i_stop="37020" i_length="695">
            <donor d_prob="0.257" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37021" g_stop="37136" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="450" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37137" i_stop="37487" i_length="351">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37488" g_stop="37564" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="527" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37565" i_stop="37841" i_length="277">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37842" g_stop="37976" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="662" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37977" i_stop="40836" i_length="2860">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40837" g_stop="40905" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="731" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E548486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33243" e_stop="33298"/>
          <exon e_start="33675" e_stop="33719"/>
          <exon e_start="34697" e_stop="34802"/>
          <exon e_start="36199" e_stop="36325"/>
          <exon e_start="37021" e_stop="37136"/>
          <exon e_start="37488" e_stop="37564"/>
          <exon e_start="37842" e_stop="37976"/>
          <exon e_start="40837" e_stop="40905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTGGTCTGTATAAAATTAGTGATTAACTTGTTATTCCTTGCATTTTTAGTCAAATATCTTGTATTCAGACAGTTACCCTGATCCTTTAGTTGAGCATTACATCGTTCTTCTCATGTATTCTTTTTGCATGAACTGAACGTCAACGCAGCTTGAGTATACATGTTAGTGGCTTGCAGTTATGTTTTAGCTTTCGCTAACTAGTAACATATGTCTGTTGCTAATGCATCAAAATAAAATTTGCTATGTTTCTGCTACTAGTGCATATCATGTAATTTATTACAGCAAAGTGGTAATTTTTGAATTATGTAGAGATTATTAAGCTACTGATAGGTGCAGAACAATGTGGTTTATCTTATAGCTGTTCTGCATGTGTTTCCAGGCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAGGTAATCATTTTCTAAACTACAGTTCTTTTTTCATAATATATCTGAGATTTTGTTAGCTTTGTTTTGTTTGGAAATAAAACGTTTATGAAGGAACCTTTCAGCTCTAGAAGCATGTTGTTCCGGTCCCCCGATATGGATCTAGTTACGGTACACTGCAGCCTGCAATATGAAATCAAATGTTTTTTTCCACAATCTATATTGCTAGTTCGTTAAGAAAGAAGTTGCAATCTCGAGATAAAGTACTTAAAAACTGAAATGATTTTCTGTTTAGATGTCATGCGATACACATAGAGTTCAAATACAATACTAATAAGATAACTACCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAACGCAGTTCAAATACAATACTAATAAGATAACTGCCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAATGCAAACTACTACAAAGAAATAACTACTGCTGGAATGAGAAACTGCAAATAACCACTACAACAAAATACCTACTTCAAACAACTACCACAATAAACTGTTGGGAGACTAAGGAGTGATAAACAAGTATGAGTTGTTTGGAAGTCATTCTTCGAGTACCTTTCCATTTTTCTTGCTGACAGTGATTTAAATATCATTTAACACAGCATTGTTAACTGTTAAGGTTGTCCAAGTTGTTCAATGTATATAGTTTGCTTTATCTATTACAAAGGTTTTTGTTCCATAATTGCCTATATCCTCTCTGTATGTCTGTATGAAAGAACATATTTGTAAATTAACATTGCCATCTCTACCCAATTTTTTGTGGATGTGTAATTCATCTGCTCCTTGAGATTGTACGTTTTGTATGAAAAAAATATAGAGACTGCTCTGGAGTAGTCACAGATGAACTTACAGGTGTAATGACCCTTTTGACTCAAACTTATACTGCAAGTCTCGATGGGTCTCTCACCCGATTGGCTGATTGTAGAGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTGGTATAAATTCTCTCCATGATACATAAATGCTCCATATGATATGGGGTCTGTTTGTAAATATCACGTGCTTTATTTCCAGATGTGAAAAGGTTTATATAATATATAAGAACATTAAGATATTAGAGAACTGCTATAACTTCATTCGTGCAATCTTAATGATAATTTATGGAGATACGCTTCCAGCATTTGATACTCCCTTAGTTGTCTATGCAACTGAACAACATACTATCTTTCTGTCACATCTTTGTTCAGTCTTTGAGTAAAGCAACAACCAAAGTTATTCTGTTAATGGGATCCTGTTTGCTGAGCATTGTAAATGCTTGTGTTCTTTTAAATTGTCTAAATCTTTGCTCATATACAATTCTTATTTGTGCCTTGAACCATGTGTTTTTTTTATTATGTTAAGGACTCGGCAAAATATTCTTATATTGTCACATCTTTCCATTGTACTTTCATTTCTGATAACACCAATGTGTATAGCTTCTGCTCATATTTGTTTAGGTATTTGCAAGATTTGATATGCTTATGACAGTGTAGCATGGTGAAGGCGAAGAATTATCTTGAGTTTAGTCCAGTTTTGGTGTTTGACTTTTTTTGAGTTTCCAGGATTCTCTCTAAAATGTTGTTATTCGAGGAAAGGATCAAAATAGTCCCTCTTCTTTGGGTTAAGGCTCAAAGTGATCCTTGAGTTTTCACATGGAGCACTAATAGTCCCTCATGTTTGCAATATTGGGGCACTTTTGGTCCTCCTTCAAAATTTTACCTATTTTTTTGCATTGATTATTCATAACCTATGTATGGGATGTTCAATCGTCATTTTATATATTTAGTAGCAATAACAAATCCATATCAAAGAATGTTAGAAAAAACATAATTTGTTTTGTTTAGTAGAAATCATATTGCAGGTAAAGTTGAGAGGTTCATCACGATAATTTCACGTGCAATAGTATAATTTTTTCTTTTCCTGCAAAGTCATATGTTAAGATGTTCTTAGTTTAGCTGCAGTAATATTTCTACTGAACAAAACAAGGTGTTTTTCTTATCACCTTCTCTCGGATAGAGTTATTATTTCTATTAAATATATAAAAAAACGATTGGACATCCCTTGTATAAAATTTTGGACAAAATTAATGTTAAAAAATAGGCAAAAAATTTTAGGATAGGACCAAAAGGGCACCAATATTGCGAACATCAGGGACTATTAGTGCTCCATGTGAAAACTCAAGGATCATTTTGAGCCTTAACCTGAAGATGAGGGATTATTTTGAGCCTTTCCTCTTGTTATTCACCTGCATCAGATTTGATGAGCTTCATAGACTTCTGAGAATAGACAATTAGTGTTTCCTCTTATATGATTTTTCTGCTTACCCCTTCTTTATCTGTGTTTGAAGTGTAGGTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAGGTGAAGTTGTAATGCTTGTTGGTTTTAATACTATTGAAATTAGTACTTCGGTCTTCCATTCAAAATACAAGTTCAAGTGTCTGTAAACATATTGACCTTGCATCATACTGGTTAGAAAATTTGAGAAATTAGAAGAATAAAAGTAGAAGTGTTTGGTTGTAATATGTGGTTCTACTGCATCTCCTGTTTGTTCTTTATTCTACTAGCTTTTCCTTTCTGAAATTTGATAGGGCCAGCTGTTAAATTTTTCTCTATTTCTGTCTGCCTGCCTTTCTTTCTGTCTCCCTTAAATGGATGGTGGAAACTAAATGAAGATAAGGTGGAAAGTTGTAGTCATATGTTCGATTCCTCATATAGAATTCTTGAAAATAGTGATCATATATCGTACAACAGATCTCTCGTAGAGCTATTTTTCATACTAATTTTGATCTCCATTGTAATTCATTATCCTTTGGTTATCGCCTAAGAACCAATGTTGTGGCCAGAATGAAAATGTATGGGCCACTTTGAATGAGATGTTAGGAAGAAACTGACATGGCACCGTTATTAATTAATTCCTGGAGTATTTAACTTCTATTTCCGTAGATACTCTGTGATAGTTAAAAGCTGGATGATCTACTCAATCCTTCGAATCTTTCTGCTTGGTAAAACGACTTTTATTACATGTAGTAATACAGGCGCTTTGTTGTCCACAGGGGCTTCTCAGGAGCATATGTGAAAGAATATATAGAAGCATCAAATCCAGCATTTTCTATTGGCGAGTATTGGGATAGTCTCGCTTATGAAGGTGGAAATTTGTGTTACAACCAAGGTGAGATTTATTTAAATGTAACCGTAGATTTGACTATTTAGTCAGAAATATTTTGACATGTGTGGTGCACAGCGTTAGGTTGTGCAACTGATTTTCTCATTTTCTGCAAATTCTTTTAAGTTGGAATTTTGCAATCTGTTCAAGCAAATAGCCAAAGGTGGTTTTTCTCCAGCTATGTGCTAGCCATTGTTCATGTGCTAGCCACTGTTCATGTGCTAGCCACTGTTCATCGTTTGTACTATTTAGGCGTGTCAATGTCCTTAAACATTGAGAGGCTAATCCCACTATGTGGAAATCCACCAGTTCCTTATGATAGTAGATTTGTGTTGTTCTGACTTCTGATGCATCCAGATGCCCATCGCCAACGCATAATTAACTGGATCAATGCTACTGGTGGGAGCTCTTCAGCATTCGATGTCACAACAAAGGTACTTCTATTAGAACATCTTTTGTTTGTAGATTTCTGTATCATACTCCAAGACCAAGAATTATCCCACTAACCTGGGAAATAATAGTTCCCTGTAATCTATTGTCCCACATAATTTACTCGTTAATAAATCAACCTTTAATAATCAATTCATGCTAAGATATCTATAGGTAAATATTTTCATCCTCCTGATTTAGATTTAAATTGCTTCTTCATACTAGTGCAGAAAGGTTTTAATGAGCTTTTCAACCTGTTGGTGAATGATATTTTTCTGGCAGGGTATACTGCATTCTGCTTTGCATAACCAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAGGTCCTCTCTCTTTCTTGCTCTAACAAGCGCACACACAAACATACAGATGTACATGCCTACTTGTGCTCTCACTCATTCAGTGAGACATGCTACAACTTAAATGCACTGCCATGGAGGTTGAATATGTCAACATTCACCTTTATAAACCTCTGTTTCAGAGTTTTTGGCCAAAAGCTAAAGTAGATCCGTCTGGTATGCCTTCCACTTTCAAAAATCTTAACAAATTTGGTCCCAAATTTAATTGTCATTTTCGGATAAAGAGACTGTCATGCAAGCAGCACATGAGCACTCTGCTTCTTCTGCTTTGGTTTCTTCTCTTTCCATCTCGGCTCGCAGAATAGGAACAGTATCAGCTTCTGCAGCTTCTCCCACCATTCTTCTTAACTGCCAGCATGATTCAACTGTTCCAACAACGAATCAATCTCCTGTAGCTGGTATATTGAGGGATGAAGCCGAAGGTTCAGGATAACCATAAGTGGGATCTCCATAGTCCATACTCCATCATAAAGAAACTTAAGACCTCATGTCAGAGACATGGAAGTACCAAGGCAGCCCTCTCATACACGTAAATTTAAACTCGCCTTTCACGGCCTCCAGAATTTGAGCACTTCTGTTCTGGAAAAGGAAAGTTTATTGCCGTGAGATTTTCGGTTAAGTGACTGTTGAAACTTGAAAGCATGCTAGGTTCAGACTGGCCCAAAGAAACAAATACACAAATAAATTGCCCAAAGTCTGAAACTTAAGATAATAGTTTCATGCGTAACTAATACTATTTCCTTCTTCATTAGCCTTGGTCAGAACCCTCTGATTGTTGCAAACACCCGGGATGATGATCTCAGGAAACATGTGAAATAGGAGGAGCTGAAAGACATTGAAGCAAACACCTTAGGAATTCAAAAGATCTGAATTTGCATGCCAAACATTTATCAAACCTTACAAAACCAGACTGTTCCATGTCAGCGCATGTATATCCACCTTCATGTGTCAACAACTCCAATGTGAGCAATGAAATTTAGCCTCATAAAATGACTTTTCTGAAACCTTGGTGTTTCCCAGAGGCATGTGTAATGTTTCTCACTGGGGAAAAGGAGCATGAGGATGGGAGAGGCAGAAGTTCTCCTGGAAAAGGGGAAAGGAGAACGTTCACATGAGGTGCACATGACAGTTCTGTTGAAGTTTGACGGAATGTTAAGGTCTTTGCAAAAAGAACTAAATTTTTGGAGACGGAGATGTTATCTGTTAATTATAATTTTAGAGGGAACCACTCAATCTTTTGGCCAACTTGAGGAATGTTTCTGGTAAAATTTTGCTTTGTTCATGGAACACCAAAATCTTGGGGTATTCTGTAGTGTATGTTCCAAATATATATTCTGATAATATAATATTAGATTTTCATATCTGATCCATAAACTTTCAATCTGCAGTTTTATACTCGCATTTGTTGTTGGAAATCTAATAAACGGAGTAGTGAAGCATGAGATTCAGGCTTGAGAGATTTAAAATTCTGAACTTTAAGCTCACCAAGTGATAATGTTTAGTCTATGATGTTGCATACCAAAACAAAACTTGGCGGAAGGATCTATTGAGCATAGATCAGAGTTAGTACCCTAGCTAACCGAGACATGTATTATGGAAGTGCTAGCTAGCAGTTAAGGCTGACTTGATTACCGTCTTATATCTTGGCCTAAATCATTTGATACTTGCCCCCCCCCCCCCCCACCCCACACACACACATACACACTCACACACGCAACCCTACTGCCTCCCTCACATATAGTGGCAGATCTAAGGGTAATTTTTATTTTTGAATTCCTTGATGTAAGAAACACGATAAGTGTAGCGGCTAGGCAATTCAGAAATTGCTTTAGCTTGCAAGTTCCTCCAAGTGTGATATTCTTATGTTCTTTAATCTCCTTGTTAGAATTTCTGGATCCGTCATTACTCACATATGCTCCCATGTTTTACTTACTAATTTTCGATTGCACTGTCCTACATTTGATGTATGTGCCTTCTATCCAACTTACATGTTTTACCTTGTGTTAAGAAATGGATCTTGAACCTAACTCAACCCCAAAAAGCTAGCTCAAGAGGTGAGGCTTGTCCAAGTTATAGAAAGAGACCACAGATCCCTTTTACTGTTGATGTGGGACACCCCCCCCCCCCCCACACCATACAGACACACACACACGGGCTAGACATCTGGAGCATGCCAATTTAATACGGGGATCCAACATCGGGAAATACCATGTTAAGAAATTGATCTTGGGGCAAACTCAACCCCAAAAGCAAGCTCACAAGGTGGGGATTGTCCAAGCAAAACAAAAAGACCACCCATCCCTTTTATCACCGATGTGGGATTCGTCATACCTTAAAAGCAGAGTAATTCCACACGAATCTTTCTTTGTGACTGGGGCCTAATGGAACTAGGTTAACTTTATTTTTTCGCATACAATTTCAATGGTAGAGGTCAATTATCAGAGTTAAGTTTGCAGAGTACGTAACGATCTTCAGTTGATCTATTGTACATTAGGTATCTGAAGTGTCTTTAGCAAATTTCATAGTTATATCTGAGCTATAATTTTTTTTAAGTGACTTGGATATTAGTTGCCATGGACTATTAGAGATGAACCTAAATGGACACTGAGAATTCATATAGCCAACTTCAACTTGCTTTGAGGAGTGTTTATTGTTTGTATGTACTATTTAATTGTAATTTTTATCTGCTTCGTGAGCTGATACGTAATTTGCTTTCATGCATTTACTCACTGATTGCTGCAAATCGGATAATGTTATTCTGATTTAGACATGTTAATACCAAACATCTTATCATGTAATAACAAATAATATTCCTTTCTTTCAGGGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACG</genome_strand>
        <mrna_strand>GTTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................GCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTTCTCAGGAGCATATGTGAAAGAATATATAGAAGCATCAAATCCAGCATTTTCTATTGGCGAGTATTGGGATAGTCTCGCTTATGAAGGTGGAAATTTGTGTTACAACCAAG...............................................................................................................................................................................................................................................................................................................................................................ATGCCCATCGCCAACGCATAATTAACTGGATCAATGCTACTGGTGGGAGCTCTTCAGCATTCGATGTCACAACAAAG.....................................................................................................................................................................................................................................................................................GGTATACTGCATTCTGCTTTGCATAACCAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294784" ref_strand="+" ref_description="SGN-E294784 [cLET-17-H9]">
      <seq>ttcgttggaagagcttaaaggctgtatagaagagatgcataaccaagatcttctggccttaggagatgtcgttttgaaccatcgatgtgctcacaaacagagtccgaatggtgtttggaacatttttggaggcaagcttgcatggggacctgaagcaattgtgtgtgatgacccaaattttcaaggccgtggaaatccttcaagtggtgatatatttcatgccgcaccaaatattgatcattcccaggaatttgtacgacaagatataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="32944" stop="36565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33244" g_stop="33298" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33299" i_stop="33674" i_length="376">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33675" g_stop="33719" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="100" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33720" i_stop="34696" i_length="977">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34697" g_stop="34802" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="206" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34803" i_stop="36198" i_length="1396">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36199" g_stop="36265" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="273" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E294784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33244" e_stop="33298"/>
          <exon e_start="33675" e_stop="33719"/>
          <exon e_start="34697" e_stop="34802"/>
          <exon e_start="36199" e_stop="36265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTGGTCTGTATAAAATTAGTGATTAACTTGTTATTCCTTGCATTTTTAGTCAAATATCTTGTATTCAGACAGTTACCCTGATCCTTTAGTTGAGCATTACATCGTTCTTCTCATGTATTCTTTTTGCATGAACTGAACGTCAACGCAGCTTGAGTATACATGTTAGTGGCTTGCAGTTATGTTTTAGCTTTCGCTAACTAGTAACATATGTCTGTTGCTAATGCATCAAAATAAAATTTGCTATGTTTCTGCTACTAGTGCATATCATGTAATTTATTACAGCAAAGTGGTAATTTTTGAATTATGTAGAGATTATTAAGCTACTGATAGGTGCAGAACAATGTGGTTTATCTTATAGCTGTTCTGCATGTGTTTCCAGGCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAGGTAATCATTTTCTAAACTACAGTTCTTTTTTCATAATATATCTGAGATTTTGTTAGCTTTGTTTTGTTTGGAAATAAAACGTTTATGAAGGAACCTTTCAGCTCTAGAAGCATGTTGTTCCGGTCCCCCGATATGGATCTAGTTACGGTACACTGCAGCCTGCAATATGAAATCAAATGTTTTTTTCCACAATCTATATTGCTAGTTCGTTAAGAAAGAAGTTGCAATCTCGAGATAAAGTACTTAAAAACTGAAATGATTTTCTGTTTAGATGTCATGCGATACACATAGAGTTCAAATACAATACTAATAAGATAACTACCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAACGCAGTTCAAATACAATACTAATAAGATAACTGCCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAATGCAAACTACTACAAAGAAATAACTACTGCTGGAATGAGAAACTGCAAATAACCACTACAACAAAATACCTACTTCAAACAACTACCACAATAAACTGTTGGGAGACTAAGGAGTGATAAACAAGTATGAGTTGTTTGGAAGTCATTCTTCGAGTACCTTTCCATTTTTCTTGCTGACAGTGATTTAAATATCATTTAACACAGCATTGTTAACTGTTAAGGTTGTCCAAGTTGTTCAATGTATATAGTTTGCTTTATCTATTACAAAGGTTTTTGTTCCATAATTGCCTATATCCTCTCTGTATGTCTGTATGAAAGAACATATTTGTAAATTAACATTGCCATCTCTACCCAATTTTTTGTGGATGTGTAATTCATCTGCTCCTTGAGATTGTACGTTTTGTATGAAAAAAATATAGAGACTGCTCTGGAGTAGTCACAGATGAACTTACAGGTGTAATGACCCTTTTGACTCAAACTTATACTGCAAGTCTCGATGGGTCTCTCACCCGATTGGCTGATTGTAGAGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTGGTATAAATTCTCTCCATGATACATAAATGCTCCATATGATATGGGGTCTGTTTGTAAATATCACGTGCTTTATTTCCAGATGTGAAAAGGTTTATATAATATATAAGAACATTAAGATATTAGAGAACTGCTATAACTTCATTCGTGCAATCTTAATGATAATTTATGGAGATACGCTTCCAGCATTTGATACTCCCTTAGTTGTCTATGCAACTGAACAACATACTATCTTTCTGTCACATCTTTGTTCAGTCTTTGAGTAAAGCAACAACCAAAGTTATTCTGTTAATGGGATCCTGTTTGCTGAGCATTGTAAATGCTTGTGTTCTTTTAAATTGTCTAAATCTTTGCTCATATACAATTCTTATTTGTGCCTTGAACCATGTGTTTTTTTTATTATGTTAAGGACTCGGCAAAATATTCTTATATTGTCACATCTTTCCATTGTACTTTCATTTCTGATAACACCAATGTGTATAGCTTCTGCTCATATTTGTTTAGGTATTTGCAAGATTTGATATGCTTATGACAGTGTAGCATGGTGAAGGCGAAGAATTATCTTGAGTTTAGTCCAGTTTTGGTGTTTGACTTTTTTTGAGTTTCCAGGATTCTCTCTAAAATGTTGTTATTCGAGGAAAGGATCAAAATAGTCCCTCTTCTTTGGGTTAAGGCTCAAAGTGATCCTTGAGTTTTCACATGGAGCACTAATAGTCCCTCATGTTTGCAATATTGGGGCACTTTTGGTCCTCCTTCAAAATTTTACCTATTTTTTTGCATTGATTATTCATAACCTATGTATGGGATGTTCAATCGTCATTTTATATATTTAGTAGCAATAACAAATCCATATCAAAGAATGTTAGAAAAAACATAATTTGTTTTGTTTAGTAGAAATCATATTGCAGGTAAAGTTGAGAGGTTCATCACGATAATTTCACGTGCAATAGTATAATTTTTTCTTTTCCTGCAAAGTCATATGTTAAGATGTTCTTAGTTTAGCTGCAGTAATATTTCTACTGAACAAAACAAGGTGTTTTTCTTATCACCTTCTCTCGGATAGAGTTATTATTTCTATTAAATATATAAAAAAACGATTGGACATCCCTTGTATAAAATTTTGGACAAAATTAATGTTAAAAAATAGGCAAAAAATTTTAGGATAGGACCAAAAGGGCACCAATATTGCGAACATCAGGGACTATTAGTGCTCCATGTGAAAACTCAAGGATCATTTTGAGCCTTAACCTGAAGATGAGGGATTATTTTGAGCCTTTCCTCTTGTTATTCACCTGCATCAGATTTGATGAGCTTCATAGACTTCTGAGAATAGACAATTAGTGTTTCCTCTTATATGATTTTTCTGCTTACCCCTTCTTTATCTGTGTTTGAAGTGTAGGTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAA</genome_strand>
        <mrna_strand>TTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................GCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726278" ref_strand="+" ref_description="SGN-E726278 [LA11BD11]">
      <seq>gttgttttgaaccatcgatgtgctcacaaacagagtccgaatggtgtttggaacatttttggaggcaagcttgcatggggacctgaagcaattgtgtgtgatgacccaaattttcaaggccgtggaaatccttcaagtggtgatatatttcatgccgcaccaaatattgatcattcccaggaatttgtacgacaagatataaaaaagtggctaaattggctccgaaatgatgttggttttgatgggtggcgccttgactttgttaggggcttctcaggagctcttcagcattcgatgtcacaacaaagggtatactgcattctgctttgcataacaaatattggaggttaattgatcctcaaggcaagccaaccggagtgatgggatggtggccctcacgtgctgtcacatttttggagaatcatgatactggatccacacagggccactggccatttcctcgggacaagcttactcaaggatatgcatatattttaacccaccctggaacgcctgtaatattttacgatcatttctatgaatttggaatccgtgatgtcataaatgagttaattgaggcacgtagacgagctggaatccattgtcgtagcccgttaaagatatatcatgcaaacggtgatggttacgttgcacagattggagatactcttgtgatgaaacttggtcatttggactggaatccttccaaagaagttcatttggatggtacctggcaaaagtttgtcgataaaggaccagaatatcaaatatggctcangcaataatactacatatattattctggacttgcattgttcttattggaattctgtctatatatatgctttcatngtgtaactataatacatcatacctcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="33387" stop="42379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33687" g_stop="33719" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33720" i_stop="34696" i_length="977">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34697" g_stop="34802" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="139" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34803" i_stop="36198" i_length="1396">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36199" g_stop="36325" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="266" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36326" i_stop="37020" i_length="695">
            <donor d_prob="0.257" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37021" g_stop="37034" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="280" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37035" i_stop="37536" i_length="502">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37537" g_stop="37564" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="308" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37565" i_stop="37841" i_length="277">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37842" g_stop="37976" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="443" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37977" i_stop="40836" i_length="2860">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40837" g_stop="40905" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="512" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40906" i_stop="41709" i_length="804">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41710" g_stop="42079" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="882" r_length="370" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E726278" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33687" e_stop="33719"/>
          <exon e_start="34697" e_stop="34802"/>
          <exon e_start="36199" e_stop="36325"/>
          <exon e_start="37021" e_stop="37034"/>
          <exon e_start="37537" e_stop="37564"/>
          <exon e_start="37842" e_stop="37976"/>
          <exon e_start="40837" e_stop="40905"/>
          <exon e_start="41710" e_stop="42079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTTTGAACCATCGATGTGCTCACAAACAGGTAATCATTTTCTAAACTACAGTTCTTTTTTCATAATATATCTGAGATTTTGTTAGCTTTGTTTTGTTTGGAAATAAAACGTTTATGAAGGAACCTTTCAGCTCTAGAAGCATGTTGTTCCGGTCCCCCGATATGGATCTAGTTACGGTACACTGCAGCCTGCAATATGAAATCAAATGTTTTTTTCCACAATCTATATTGCTAGTTCGTTAAGAAAGAAGTTGCAATCTCGAGATAAAGTACTTAAAAACTGAAATGATTTTCTGTTTAGATGTCATGCGATACACATAGAGTTCAAATACAATACTAATAAGATAACTACCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAACGCAGTTCAAATACAATACTAATAAGATAACTGCCATTAGAAACTAGGACATGGCTTCCTAATATTACTGGAATGAGAAAATGCAAACTACTACAAAGAAATAACTACTGCTGGAATGAGAAACTGCAAATAACCACTACAACAAAATACCTACTTCAAACAACTACCACAATAAACTGTTGGGAGACTAAGGAGTGATAAACAAGTATGAGTTGTTTGGAAGTCATTCTTCGAGTACCTTTCCATTTTTCTTGCTGACAGTGATTTAAATATCATTTAACACAGCATTGTTAACTGTTAAGGTTGTCCAAGTTGTTCAATGTATATAGTTTGCTTTATCTATTACAAAGGTTTTTGTTCCATAATTGCCTATATCCTCTCTGTATGTCTGTATGAAAGAACATATTTGTAAATTAACATTGCCATCTCTACCCAATTTTTTGTGGATGTGTAATTCATCTGCTCCTTGAGATTGTACGTTTTGTATGAAAAAAATATAGAGACTGCTCTGGAGTAGTCACAGATGAACTTACAGGTGTAATGACCCTTTTGACTCAAACTTATACTGCAAGTCTCGATGGGTCTCTCACCCGATTGGCTGATTGTAGAGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTGGTATAAATTCTCTCCATGATACATAAATGCTCCATATGATATGGGGTCTGTTTGTAAATATCACGTGCTTTATTTCCAGATGTGAAAAGGTTTATATAATATATAAGAACATTAAGATATTAGAGAACTGCTATAACTTCATTCGTGCAATCTTAATGATAATTTATGGAGATACGCTTCCAGCATTTGATACTCCCTTAGTTGTCTATGCAACTGAACAACATACTATCTTTCTGTCACATCTTTGTTCAGTCTTTGAGTAAAGCAACAACCAAAGTTATTCTGTTAATGGGATCCTGTTTGCTGAGCATTGTAAATGCTTGTGTTCTTTTAAATTGTCTAAATCTTTGCTCATATACAATTCTTATTTGTGCCTTGAACCATGTGTTTTTTTTATTATGTTAAGGACTCGGCAAAATATTCTTATATTGTCACATCTTTCCATTGTACTTTCATTTCTGATAACACCAATGTGTATAGCTTCTGCTCATATTTGTTTAGGTATTTGCAAGATTTGATATGCTTATGACAGTGTAGCATGGTGAAGGCGAAGAATTATCTTGAGTTTAGTCCAGTTTTGGTGTTTGACTTTTTTTGAGTTTCCAGGATTCTCTCTAAAATGTTGTTATTCGAGGAAAGGATCAAAATAGTCCCTCTTCTTTGGGTTAAGGCTCAAAGTGATCCTTGAGTTTTCACATGGAGCACTAATAGTCCCTCATGTTTGCAATATTGGGGCACTTTTGGTCCTCCTTCAAAATTTTACCTATTTTTTTGCATTGATTATTCATAACCTATGTATGGGATGTTCAATCGTCATTTTATATATTTAGTAGCAATAACAAATCCATATCAAAGAATGTTAGAAAAAACATAATTTGTTTTGTTTAGTAGAAATCATATTGCAGGTAAAGTTGAGAGGTTCATCACGATAATTTCACGTGCAATAGTATAATTTTTTCTTTTCCTGCAAAGTCATATGTTAAGATGTTCTTAGTTTAGCTGCAGTAATATTTCTACTGAACAAAACAAGGTGTTTTTCTTATCACCTTCTCTCGGATAGAGTTATTATTTCTATTAAATATATAAAAAAACGATTGGACATCCCTTGTATAAAATTTTGGACAAAATTAATGTTAAAAAATAGGCAAAAAATTTTAGGATAGGACCAAAAGGGCACCAATATTGCGAACATCAGGGACTATTAGTGCTCCATGTGAAAACTCAAGGATCATTTTGAGCCTTAACCTGAAGATGAGGGATTATTTTGAGCCTTTCCTCTTGTTATTCACCTGCATCAGATTTGATGAGCTTCATAGACTTCTGAGAATAGACAATTAGTGTTTCCTCTTATATGATTTTTCTGCTTACCCCTTCTTTATCTGTGTTTGAAGTGTAGGTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAGGTGAAGTTGTAATGCTTGTTGGTTTTAATACTATTGAAATTAGTACTTCGGTCTTCCATTCAAAATACAAGTTCAAGTGTCTGTAAACATATTGACCTTGCATCATACTGGTTAGAAAATTTGAGAAATTAGAAGAATAAAAGTAGAAGTGTTTGGTTGTAATATGTGGTTCTACTGCATCTCCTGTTTGTTCTTTATTCTACTAGCTTTTCCTTTCTGAAATTTGATAGGGCCAGCTGTTAAATTTTTCTCTATTTCTGTCTGCCTGCCTTTCTTTCTGTCTCCCTTAAATGGATGGTGGAAACTAAATGAAGATAAGGTGGAAAGTTGTAGTCATATGTTCGATTCCTCATATAGAATTCTTGAAAATAGTGATCATATATCGTACAACAGATCTCTCGTAGAGCTATTTTTCATACTAATTTTGATCTCCATTGTAATTCATTATCCTTTGGTTATCGCCTAAGAACCAATGTTGTGGCCAGAATGAAAATGTATGGGCCACTTTGAATGAGATGTTAGGAAGAAACTGACATGGCACCGTTATTAATTAATTCCTGGAGTATTTAACTTCTATTTCCGTAGATACTCTGTGATAGTTAAAAGCTGGATGATCTACTCAATCCTTCGAATCTTTCTGCTTGGTAAAACGACTTTTATTACATGTAGTAATACAGGCGCTTTGTTGTCCACAGGGGCTTCTCAGGAGCATATGTGAAAGAATATATAGAAGCATCAAATCCAGCATTTTCTATTGGCGAGTATTGGGATAGTCTCGCTTATGAAGGTGGAAATTTGTGTTACAACCAAGGTGAGATTTATTTAAATGTAACCGTAGATTTGACTATTTAGTCAGAAATATTTTGACATGTGTGGTGCACAGCGTTAGGTTGTGCAACTGATTTTCTCATTTTCTGCAAATTCTTTTAAGTTGGAATTTTGCAATCTGTTCAAGCAAATAGCCAAAGGTGGTTTTTCTCCAGCTATGTGCTAGCCATTGTTCATGTGCTAGCCACTGTTCATGTGCTAGCCACTGTTCATCGTTTGTACTATTTAGGCGTGTCAATGTCCTTAAACATTGAGAGGCTAATCCCACTATGTGGAAATCCACCAGTTCCTTATGATAGTAGATTTGTGTTGTTCTGACTTCTGATGCATCCAGATGCCCATCGCCAACGCATAATTAACTGGATCAATGCTACTGGTGGGAGCTCTTCAGCATTCGATGTCACAACAAAGGTACTTCTATTAGAACATCTTTTGTTTGTAGATTTCTGTATCATACTCCAAGACCAAGAATTATCCCACTAACCTGGGAAATAATAGTTCCCTGTAATCTATTGTCCCACATAATTTACTCGTTAATAAATCAACCTTTAATAATCAATTCATGCTAAGATATCTATAGGTAAATATTTTCATCCTCCTGATTTAGATTTAAATTGCTTCTTCATACTAGTGCAGAAAGGTTTTAATGAGCTTTTCAACCTGTTGGTGAATGATATTTTTCTGGCAGGGTATACTGCATTCTGCTTTGCATAACCAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAGGTCCTCTCTCTTTCTTGCTCTAACAAGCGCACACACAAACATACAGATGTACATGCCTACTTGTGCTCTCACTCATTCAGTGAGACATGCTACAACTTAAATGCACTGCCATGGAGGTTGAATATGTCAACATTCACCTTTATAAACCTCTGTTTCAGAGTTTTTGGCCAAAAGCTAAAGTAGATCCGTCTGGTATGCCTTCCACTTTCAAAAATCTTAACAAATTTGGTCCCAAATTTAATTGTCATTTTCGGATAAAGAGACTGTCATGCAAGCAGCACATGAGCACTCTGCTTCTTCTGCTTTGGTTTCTTCTCTTTCCATCTCGGCTCGCAGAATAGGAACAGTATCAGCTTCTGCAGCTTCTCCCACCATTCTTCTTAACTGCCAGCATGATTCAACTGTTCCAACAACGAATCAATCTCCTGTAGCTGGTATATTGAGGGATGAAGCCGAAGGTTCAGGATAACCATAAGTGGGATCTCCATAGTCCATACTCCATCATAAAGAAACTTAAGACCTCATGTCAGAGACATGGAAGTACCAAGGCAGCCCTCTCATACACGTAAATTTAAACTCGCCTTTCACGGCCTCCAGAATTTGAGCACTTCTGTTCTGGAAAAGGAAAGTTTATTGCCGTGAGATTTTCGGTTAAGTGACTGTTGAAACTTGAAAGCATGCTAGGTTCAGACTGGCCCAAAGAAACAAATACACAAATAAATTGCCCAAAGTCTGAAACTTAAGATAATAGTTTCATGCGTAACTAATACTATTTCCTTCTTCATTAGCCTTGGTCAGAACCCTCTGATTGTTGCAAACACCCGGGATGATGATCTCAGGAAACATGTGAAATAGGAGGAGCTGAAAGACATTGAAGCAAACACCTTAGGAATTCAAAAGATCTGAATTTGCATGCCAAACATTTATCAAACCTTACAAAACCAGACTGTTCCATGTCAGCGCATGTATATCCACCTTCATGTGTCAACAACTCCAATGTGAGCAATGAAATTTAGCCTCATAAAATGACTTTTCTGAAACCTTGGTGTTTCCCAGAGGCATGTGTAATGTTTCTCACTGGGGAAAAGGAGCATGAGGATGGGAGAGGCAGAAGTTCTCCTGGAAAAGGGGAAAGGAGAACGTTCACATGAGGTGCACATGACAGTTCTGTTGAAGTTTGACGGAATGTTAAGGTCTTTGCAAAAAGAACTAAATTTTTGGAGACGGAGATGTTATCTGTTAATTATAATTTTAGAGGGAACCACTCAATCTTTTGGCCAACTTGAGGAATGTTTCTGGTAAAATTTTGCTTTGTTCATGGAACACCAAAATCTTGGGGTATTCTGTAGTGTATGTTCCAAATATATATTCTGATAATATAATATTAGATTTTCATATCTGATCCATAAACTTTCAATCTGCAGTTTTATACTCGCATTTGTTGTTGGAAATCTAATAAACGGAGTAGTGAAGCATGAGATTCAGGCTTGAGAGATTTAAAATTCTGAACTTTAAGCTCACCAAGTGATAATGTTTAGTCTATGATGTTGCATACCAAAACAAAACTTGGCGGAAGGATCTATTGAGCATAGATCAGAGTTAGTACCCTAGCTAACCGAGACATGTATTATGGAAGTGCTAGCTAGCAGTTAAGGCTGACTTGATTACCGTCTTATATCTTGGCCTAAATCATTTGATACTTGCCCCCCCCCCCCCCCACCCCACACACACACATACACACTCACACACGCAACCCTACTGCCTCCCTCACATATAGTGGCAGATCTAAGGGTAATTTTTATTTTTGAATTCCTTGATGTAAGAAACACGATAAGTGTAGCGGCTAGGCAATTCAGAAATTGCTTTAGCTTGCAAGTTCCTCCAAGTGTGATATTCTTATGTTCTTTAATCTCCTTGTTAGAATTTCTGGATCCGTCATTACTCACATATGCTCCCATGTTTTACTTACTAATTTTCGATTGCACTGTCCTACATTTGATGTATGTGCCTTCTATCCAACTTACATGTTTTACCTTGTGTTAAGAAATGGATCTTGAACCTAACTCAACCCCAAAAAGCTAGCTCAAGAGGTGAGGCTTGTCCAAGTTATAGAAAGAGACCACAGATCCCTTTTACTGTTGATGTGGGACACCCCCCCCCCCCCCACACCATACAGACACACACACACGGGCTAGACATCTGGAGCATGCCAATTTAATACGGGGATCCAACATCGGGAAATACCATGTTAAGAAATTGATCTTGGGGCAAACTCAACCCCAAAAGCAAGCTCACAAGGTGGGGATTGTCCAAGCAAAACAAAAAGACCACCCATCCCTTTTATCACCGATGTGGGATTCGTCATACCTTAAAAGCAGAGTAATTCCACACGAATCTTTCTTTGTGACTGGGGCCTAATGGAACTAGGTTAACTTTATTTTTTCGCATACAATTTCAATGGTAGAGGTCAATTATCAGAGTTAAGTTTGCAGAGTACGTAACGATCTTCAGTTGATCTATTGTACATTAGGTATCTGAAGTGTCTTTAGCAAATTTCATAGTTATATCTGAGCTATAATTTTTTTTAAGTGACTTGGATATTAGTTGCCATGGACTATTAGAGATGAACCTAAATGGACACTGAGAATTCATATAGCCAACTTCAACTTGCTTTGAGGAGTGTTTATTGTTTGTATGTACTATTTAATTGTAATTTTTATCTGCTTCGTGAGCTGATACGTAATTTGCTTTCATGCATTTACTCACTGATTGCTGCAAATCGGATAATGTTATTCTGATTTAGACATGTTAATACCAAACATCTTATCATGTAATAACAAATAATATTCCTTTCTTTCAGGGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACGGTAATCTTTGTTTTCGTTGATTTTTGTGGTAGATCTTTAAGAAGGAGAAGAGAAAAAATTGTTCTCCGAAGTAAATTGAGTAGCTAAATGTGACGTCCCGCCACATCCTAGTTAAATTTTGCATCGGAAAGAGGCGGAAGGGGCTAGAGTTGTGGAGACGTTTGCGGAGAATTCTAGAACCTTCTAGATTAATCAAGAAGACTAGAGAATTCCTTAGAATACTTTAGATACTTTTGGAAGAGTTTAACATATTCTAGAAAATGTGGAATTCTCGAGAATATGGACTAAAGTGTAATTACTTTAGGGACTTGTAGAGTAATTTTTATTACACTTAGGCCCTTAGGAGGTAGTATAAATAGAAGAGCTCTCATTTGTAAATCATCCAACAATCCAACCAAGCAAAGTTGTAAGCAAGTCTTACAAGTATAATACAAGCCCTTCTTTCAAAGTTCTTTCTAAGTCTTTCTTTACATTCTCTTAGCGATCTAAGTCTTAAAGGCTTACTTGAGCTTAGAAGATCGTGAAAGATTCGTGAGTAAGTTGTGTCAAGTGCCGCATGGAGTCTTAGCAAATACTCTAAGTCCGTGACATAAAGCTCCCTTGTTTTTCTTTTACCAAATAACATTTAGTTTCCTTTCACCTACATTAGTAGCTTTTAAACTAGAAGGGACTAGTGAGATCCAAACTGAGTACTGCATGAGTGTGCTAGCGGAATTGTGGACTCCTTACACGCATACAATGAGCTCTTTAACTTATGTTGTTTTGCTATAACCTAGTCTTACTAGCTTCTATTCGTCATTGCAGCCTGTAATATTTTACGATCATTTCTATGAATTTGGAATCCGTGATGTCATAAATGAGTTAATTGAGGCACGTAGACGAGCTGGAATCCATTGTCGTAGCCCGTTAAAGATATATCATGCAAACGGTGATGGTTACGTTGCACAGATTGGAGATACTCTTGTGATGAAACTTGGTCATTTGGACTGGAATCCTTCCAAAGAAGTTCATTTGGATGGTACCTGGCAAAAGTTTGTCGATAAAGGACCAGAATATCAAATATGGCTCAGGCAATAATACTACATATATTATTCTGGACTTGCATTGTTCTTATTGGTATTCTGTCTATATATATGCTTTCATGTTGTAACTATAATACATCATACCTCACATC</genome_strand>
        <mrna_strand>GTTGTTTTGAACCATCGATGTGCTCACAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTTCTCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAGCATTCGATGTCACAACAAAG.....................................................................................................................................................................................................................................................................................GGTATACTGCATTCTGCTTTGCATAACAAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTAATATTTTACGATCATTTCTATGAATTTGGAATCCGTGATGTCATAAATGAGTTAATTGAGGCACGTAGACGAGCTGGAATCCATTGTCGTAGCCCGTTAAAGATATATCATGCAAACGGTGATGGTTACGTTGCACAGATTGGAGATACTCTTGTGATGAAACTTGGTCATTTGGACTGGAATCCTTCCAAAGAAGTTCATTTGGATGGTACCTGGCAAAAGTTTGTCGATAAAGGACCAGAATATCAAATATGGCTCANGCAATAATACTACATATATTATTCTGGACTTGCATTGTTCTTATTGGAATTCTGTCTATATATATGCTTTCATNGTGTAACTATAATACATCATACCTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541050" ref_strand="+" ref_description="SGN-E541050 [TUS-61-K8](-)">
      <seq>tatgcatatatttttaaccccccctggaacgcctgtaatattttacgatcatttctatgaatttggaatccgtgatgtcataaatgagttaattgaggcacgtagacgagctggaatccattgtcgtagcccgttaaagatatatcatgcaaacggtgatggttacgttgcacagattggagatactcttgtgatgaaacttggtcatttggactggaatccttccaaagaagttcatttggatggtacctggcaaaagtttgtcgataaaggaccagaatatcaaatatggctcaggcaataatactacatatattattctggacttgcattgttcttattggtattctgtctatatatatgctttcatgttgtaactataatacatcatacctcacatcagagattttgaattcctgcatcagtaaatgaaaagaataataaaaaagaactgatgttggggtgggcttttcatttgacaatggctatttatgatgttattggtttgtattcgtgcattattatatcatttgttattttgttgcataaacaatctatacattaatatcattaactaataaagctgtgttttatcaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41392" stop="42574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41710" g_stop="42274" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="596" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E541050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41710" e_stop="42274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTAATATTTTACGATCATTTCTATGAATTTGGAATCCGTGATGTCATAAATGAGTTAATTGAGGCACGTAGACGAGCTGGAATCCATTGTCGTAGCCCGTTAAAGATATATCATGCAAACGGTGATGGTTACGTTGCACAGATTGGAGATACTCTTGTGATGAAACTTGGTCATTTGGACTGGAATCCTTCCAAAGAAGTTCATTTGGATGGTACCTGGCAAAAGTTTGTCGATAAAGGACCAGAATATCAAATATGGCTCAGGCAATAATACTACATATATTATTCTGGACTTGCATTGTTCTTATTGGTATTCTGTCTATATATATGCTTTCATGTTGTAACTATAATACATCATACCTCACATCAGAGATTTTGAATTCCTGCATCAGTAAATGAAAAGAATAATAAAAAAGAACTGATGTTGGGGTGGGCTTTTCATTTGACAATGGCTATTTATGATGTTATTGGTTTGTATTCGTGCATTATTATATCATTTGTTATTTTGTTGCATAAACAATCTATACATTAATATCATTAACTAATAAAGCTGTGTTTTATCA</genome_strand>
        <mrna_strand>CCTGTAATATTTTACGATCATTTCTATGAATTTGGAATCCGTGATGTCATAAATGAGTTAATTGAGGCACGTAGACGAGCTGGAATCCATTGTCGTAGCCCGTTAAAGATATATCATGCAAACGGTGATGGTTACGTTGCACAGATTGGAGATACTCTTGTGATGAAACTTGGTCATTTGGACTGGAATCCTTCCAAAGAAGTTCATTTGGATGGTACCTGGCAAAAGTTTGTCGATAAAGGACCAGAATATCAAATATGGCTCAGGCAATAATACTACATATATTATTCTGGACTTGCATTGTTCTTATTGGTATTCTGTCTATATATATGCTTTCATGTTGTAACTATAATACATCATACCTCACATCAGAGATTTTGAATTCCTGCATCAGTAAATGAAAAGAATAATAAAAAAGAACTGATGTTGGGGTGGGCTTTTCATTTGACAATGGCTATTTATGATGTTATTGGTTTGTATTCGTGCATTATTATATCATTTGTTATTTTGTTGCATAAACAATCTATACATTAATATCATTAACTAATAAAGCTGTGTTTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549185" ref_strand="+" ref_description="SGN-E549185 [TUS-68-B10]">
      <seq>gccaatcatgaacacatcagatttactttggacaagcatggggaattcaacaatgcaaaaaatcattttcaacatgttggttcacaacaataaatctgtgaaatcagcagattggcttatttgcaactcaacatatgatcttgaaccaggagccttcaaactagcaccagagatagtgcctataggtccacttttttcaaacaactcactcgaatcaaacgcgttgtcacttgaagcagaagcccttatatcttctagagaatctcctaattcactagccggatcgttctggcccgaggactcaacttgtctagactggcttgatcaacaaccattatgctcagttgtgtatgtagcctttgggagcttcacaatattcaatgaaactcagtttcaagaattggcattagggcttgaactatcaaacaaaccattcttatgggttgtgagaactactactctagatactaaaagtgacattttcttgaaaaaaattgaagaaaaaatagggaggcaaaaggggaaaatagtgagttgggcaccacaacaaaaggtgttgagtcattctagtataggttgttttgttagtcactgtggttggaattcgacgatagaagcaatgagtaacggggttccaatcttgtgttggccttattttgctgaccaatttatgaaccaaagttatgtttgtgatatatggaaagttggattaggactaaagaaagggataatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="43542" stop="44877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43842" g_stop="44577" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E549185" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43842" e_stop="44577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATCATGAACACATCAGATTTACTTTGGACAAGCATGGGGAATTCAACAATGCAAAAAATCATTTTCAACATGTTGGTTCACAACAATAAATCTGTGAAATCAGCAGATTGGCTTATTTGCAACTCAACATATGATCTTGAACCAGGAGCCTTCAAACTAGCACCAGAGATAGTGCCTATAGGTCCACTTTTTTCAAACAACTCACTCGAATCAAACGCGTTGTCACTTGAAGCAGAAGCCCTTATATCTTCTAGAGAATCTCCTAATTCACTAGCCGGATCGTTCTGGCCCGAGGACTCAACTTGTCTAGACTGGCTTGATCAACAACCATTATGCTCAGTTGTGTATGTAGCCTTTGGGAGCTTCACAATATTCAATGAAACTCAGTTTCAAGAATTGGCATTAGGGCTTGAACTATCAAACAAACCATTCTTATGGGTTGTGAGAACTACTACTCTAGATACTAAAAGTGACATTTTCTTGAAAAAATTTGAAGAAAAAATAGGGAGGCAAAAGGGGAAAATAGTGAGTTGGGCACCACAACAAAAGGTGTTGAGTCATTCTAGTATAGGTTGTTTTGTTAGTCACTGTGGTTGGAATTCGACGATAGAAGCAATGAGTAACGGGGTTCCAATCTTGTGTTGGCCTTATTTTGCTGACCAATTTATGAACCAAAGTTATGTTTGTGATATATGGAAAGTTGGATTAGGACTAAAGAAAGGGGATAATGGG</genome_strand>
        <mrna_strand>GCCAATCATGAACACATCAGATTTACTTTGGACAAGCATGGGGAATTCAACAATGCAAAAAATCATTTTCAACATGTTGGTTCACAACAATAAATCTGTGAAATCAGCAGATTGGCTTATTTGCAACTCAACATATGATCTTGAACCAGGAGCCTTCAAACTAGCACCAGAGATAGTGCCTATAGGTCCACTTTTTTCAAACAACTCACTCGAATCAAACGCGTTGTCACTTGAAGCAGAAGCCCTTATATCTTCTAGAGAATCTCCTAATTCACTAGCCGGATCGTTCTGGCCCGAGGACTCAACTTGTCTAGACTGGCTTGATCAACAACCATTATGCTCAGTTGTGTATGTAGCCTTTGGGAGCTTCACAATATTCAATGAAACTCAGTTTCAAGAATTGGCATTAGGGCTTGAACTATCAAACAAACCATTCTTATGGGTTGTGAGAACTACTACTCTAGATACTAAAAGTGACATTTTCTTGAAAAAAATTGAAGAAAAAATAGGGAGGCAAAAGGGGAAAATAGTGAGTTGGGCACCACAACAAAAGGTGTTGAGTCATTCTAGTATAGGTTGTTTTGTTAGTCACTGTGGTTGGAATTCGACGATAGAAGCAATGAGTAACGGGGTTCCAATCTTGTGTTGGCCTTATTTTGCTGACCAATTTATGAACCAAAGTTATGTTTGTGATATATGGAAAGTTGGATTAGGACTAAAGAAA-GGGATAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311742" ref_strand="+" ref_description="SGN-E311742 [cLEZ-9-M19]">
      <seq>ccaatcatgaacacatcagatttactttggacaagcatggggaattcaacaatgcaaaaaatcattttcaacatgttggttcacaacaataaatctgtgaaatcagcagattggcttatttgcaactcaacatatgatcttgaaccaggagccttcaaactagcaccagagatagtgcctataggtccacttttttcaaacaactcactcgaatcaaacgcgttgtcacttgaagcagaagcccttatatcttctagagaatctcctaattcactagccggatcgttctggcccgaggactcaacttgtctagactggcttgatcaacaaccattatgctcagttgtgtatgtagcctttgggagcttcacaatattcaatgaaactcagtttcaagaattggcattagggcttgaactatcaaacaaaccattcttatgggttgtgagaactactactctagatactaaaagtgacattttcttgaaaaaaattgaagaaaaaatagggaggcaaaaggggaaaatagtgagttgggcaccacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="43543" stop="44689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43843" g_stop="44389" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E311742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43843" e_stop="44389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCATGAACACATCAGATTTACTTTGGACAAGCATGGGGAATTCAACAATGCAAAAAATCATTTTCAACATGTTGGTTCACAACAATAAATCTGTGAAATCAGCAGATTGGCTTATTTGCAACTCAACATATGATCTTGAACCAGGAGCCTTCAAACTAGCACCAGAGATAGTGCCTATAGGTCCACTTTTTTCAAACAACTCACTCGAATCAAACGCGTTGTCACTTGAAGCAGAAGCCCTTATATCTTCTAGAGAATCTCCTAATTCACTAGCCGGATCGTTCTGGCCCGAGGACTCAACTTGTCTAGACTGGCTTGATCAACAACCATTATGCTCAGTTGTGTATGTAGCCTTTGGGAGCTTCACAATATTCAATGAAACTCAGTTTCAAGAATTGGCATTAGGGCTTGAACTATCAAACAAACCATTCTTATGGGTTGTGAGAACTACTACTCTAGATACTAAAAGTGACATTTTCTTGAAAAAATTTGAAGAAAAAATAGGGAGGCAAAAGGGGAAAATAGTGAGTTGGGCACCACAAC</genome_strand>
        <mrna_strand>CCAATCATGAACACATCAGATTTACTTTGGACAAGCATGGGGAATTCAACAATGCAAAAAATCATTTTCAACATGTTGGTTCACAACAATAAATCTGTGAAATCAGCAGATTGGCTTATTTGCAACTCAACATATGATCTTGAACCAGGAGCCTTCAAACTAGCACCAGAGATAGTGCCTATAGGTCCACTTTTTTCAAACAACTCACTCGAATCAAACGCGTTGTCACTTGAAGCAGAAGCCCTTATATCTTCTAGAGAATCTCCTAATTCACTAGCCGGATCGTTCTGGCCCGAGGACTCAACTTGTCTAGACTGGCTTGATCAACAACCATTATGCTCAGTTGTGTATGTAGCCTTTGGGAGCTTCACAATATTCAATGAAACTCAGTTTCAAGAATTGGCATTAGGGCTTGAACTATCAAACAAACCATTCTTATGGGTTGTGAGAACTACTACTCTAGATACTAAAAGTGACATTTTCTTGAAAAAAATTGAAGAAAAAATAGGGAGGCAAAAGGGGAAAATAGTGAGTTGGGCACCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338945" ref_strand="+" ref_description="SGN-E338945 [cTOE-21-L24]">
      <seq>ctaatgggttcacagccaaaaaaatcgagtagcttgcggctaaggagatcgagaagaaattcttccgtggaaaaacggtcgaaaaatggagtagttaacaacagtagcaatgccgccggcgatgataattcgatttcaatttcggaaaaattggaagctctgaagcaacttctcccagtcaacaatggcgaactaaaagcagatcagttatttgaagaaacagctgattatattgttcttctcagaactcaaatcttcgttttacagaaactgctcgatttttgtgacgatgcatctggtcagtcccaacatattaatgctgtatagttagtagtaattatttcctaatcgaatttttattcttagtagttaggttctcaattgaaggtcagtagttactaataatttatagtgacaaaaatctgaaatacattctaattttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="50313" stop="49265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50013" g_stop="49565" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E338945" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50013" e_stop="49565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGGTTCACAGCCAAAAAAATCGAGTAGCTTGCGGCTAAGGAGATCGAGAAGAAATTCTTCCGTGGAAAAACGGTCGAAAAATGGAGTAGTTAACAACAGTAGCAATGCCGCCGGCGATGATAATTCGATTTCAATTTCGGAAAAATTGGAAGCTCTGAAGCAACTTCTCCCAGTCAACAATGGCGAACTAAAAGCAGATCAGTTATTTGAAGAAACAGCTGATTATATTGTTCTTCTCAGAACTCAAATCTTCGTTTTACAGAAACTGCTCGATTTTTGTGACGATGCATCTGGTCAGTCCCAACATATTAATGCTGTATAGTTAGTAGTAATTATTTCCTAATCGAATTTTTATTCTTAGTAGTTAGGTTCTCAATTGAAGGTCAGTAGTTACTAGTAATTTATAGTGACAAAAATCTGAAATACATTCTAATTTTTTTTTTT</genome_strand>
        <mrna_strand>CTAATGGGTTCACAGCCAAAAAAATCGAGTAGCTTGCGGCTAAGGAGATCGAGAAGAAATTCTTCCGTGGAAAAACGGTCGAAAAATGGAGTAGTTAACAACAGTAGCAATGCCGCCGGCGATGATAATTCGATTTCAATTTCGGAAAAATTGGAAGCTCTGAAGCAACTTCTCCCAGTCAACAATGGCGAACTAAAAGCAGATCAGTTATTTGAAGAAACAGCTGATTATATTGTTCTTCTCAGAACTCAAATCTTCGTTTTACAGAAACTGCTCGATTTTTGTGACGATGCATCTGGTCAGTCCCAACATATTAATGCTGTATAGTTAGTAGTAATTATTTCCTAATCGAATTTTTATTCTTAGTAGTTAGGTTCTCAATTGAAGGTCAGTAGTTACTAATAATTTATAGTGACAAAAATCTGAAATACATTCTAATTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547305" ref_strand="+" ref_description="SGN-E547305 [TUS-71-B22](-)">
      <seq>ggtatggaaatgaatcgggtgggtatggaagtaaaaccacatctactgggtatggagatgaatcgggtgggtatgggagtaaaaccacatctaccgggtatggagatgaatccggtggatatgggagtaaaaccaaatccaccggtcatggaagaaagagtggtggtgatgatgacgacgatgatgaggggaaaaaatcagcatacggatctagtgggtatgggagttcaacaattgagaggcctagttatggaaggtctgaggaagatgactacaagaagtctagctatgggaagggcggtgacgatgatgaaggctatggtcgcaagaaatatggtggttctgactctgactctgataaggagaagaataaaaatcgtcgcaaaaagcacaccgatgatgattgagcagtcatgattttctcaaatgtgatctattcatgtgttatttgaagttagtagtaaataaaataaaattggcatgtcttcacagtgttttattgttacgttgcaaaaaacactgatgattgagctgagatgcttttgtcatccgctccaaattcatgccatattattattattattattattaaatgaacttttttatgtgtttgtcgagtcatgtttgtacagagaaggaaatgccagtagttatttgtatcaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="72656" stop="71318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72356" g_stop="72022" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72021" i_stop="71945" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71944" g_stop="71617" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="666" r_length="331" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="680"/>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E547305" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72356" e_stop="72022"/>
          <exon e_start="71944" e_stop="71617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATGGAAATGAATCGGGTGGGTATGGGAGTAAAACCACATCTACCGGGTATGGAGATGAATCGGGTGGGTATGGGAGTAAAACCACATCTACCGGGTACGGAGATGAATCGGGTGGATATGGGAGTAAAACCAAATCCACCGGTCATGGAAGAAAGAGTGGTGGTGATGATGACGACGATGATGAGGGGAAAAAATCAGCATACGGATCTAGTGGGTATGGGAGTTCAACAGTTGAGAGGCCTAGTTATGGTAGGTCCGAGGAAGATGACTACAAGAAGTCTAGCTATGGGAAGGGCGGTGACGATGATGAAGGCTATGGTCGCAAGAAATATGTAAGTAGTTTTTATTTTTGAATCGCATAATAAAAACAACTTGTTATCTTATTGATTTAATCTTAATAAATTGGCAGGGTGATTCTGACTCTGACTCCGACAAGGAGAAGAATAAAAATCGTCGCAAAAAGCACTCCGATGATGATTGAGCAGAGTCATGATTTTCTCAAATGTGATCTATTCATGTGTTATTTGAAGTTAGTTAGTAGTAAATAAAATAAAATTGGCATGTCTTCACAGTGTTTTATTGTTACGTTGCAAAAAACACTGATGATTGAGCTGAGATGCTTTTGTCATCCGCTCCAAATTTATGCC--------A-TATTATTATTATTAAATGAACTTTTTTATGTGTTTGTCGAGTCATGTTTGTACAGAGAAGGAAATGCCAGTAGTTATTTGTATCAATAG</genome_strand>
        <mrna_strand>GGTATGGAAATGAATCGGGTGGGTATGGAAGTAAAACCACATCTACTGGGTATGGAGATGAATCGGGTGGGTATGGGAGTAAAACCACATCTACCGGGTATGGAGATGAATCCGGTGGATATGGGAGTAAAACCAAATCCACCGGTCATGGAAGAAAGAGTGGTGGTGATGATGACGACGATGATGAGGGGAAAAAATCAGCATACGGATCTAGTGGGTATGGGAGTTCAACAATTGAGAGGCCTAGTTATGGAAGGTCTGAGGAAGATGACTACAAGAAGTCTAGCTATGGGAAGGGCGGTGACGATGATGAAGGCTATGGTCGCAAGAAATAT.............................................................................GGTGGTTCTGACTCTGACTCTGATAAGGAGAAGAATAAAAATCGTCGCAAAAAGCACACCGATGATGATTGAGC--AGTCATGATTTTCTCAAATGTGATCTATTCATGTGTTATTTG-A---AGTTAGTAGTAAATAAAATAAAATTGGCATGTCTTCACAGTGTTTTATTGTTACGTTGCAAAAAACACTGATGATTGAGCTGAGATGCTTTTGTCATCCGCTCCAAATTCATGCCATATTATTATTATTATTATTATTAAATGAACTTTTTTATGTGTTTGTCGAGTCATGTTTGTACAGAGAAGGAAATGCCAGTAGTTATTTGTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547306" ref_strand="+" ref_description="SGN-E547306 [TUS-71-B22]">
      <seq>gaaagaaaataatttttgaaattaacacaatcatgtcttacggtgaaagtgagtatggtggaagtggaattggatccggacatggaaaacccaaaaagtcacatggatctggatatggacgaaacgacgatgatgagccccaatctgaatatggatccggttacgggtcaaaaagtactactcatgactctgatgatcagtacgggtcaggtggatacgggagcaaaaccggatccggtgggcatggaaggaaaagtgaacacggggataagagttcggaatatggatctggttatggaaatgaatcgagtggatatgggagtaaaaccacatccaccgggtatggagatgattcgggtgggtatgggagtaaaaccacatccaccggatatggagatgattcgggtggatatgggagtaaaaccacatccaccgggtatggagatgattcgggtgggtatgggagtaaaaccacatccaccggatatggagatgaatctggtgggtatgggagtaaaaccaaatccaccgggtatggaaatgattcgggtgggtatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="73284" stop="72124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72984" g_stop="72424" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E547306" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72984" e_stop="72424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGGGTAAAACCACATCCACCGGATATGGAGATGATTCGAATGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAAATGATTCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGACGATTCGGGTGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAGATGAATCGGGTGGGTATGGG</genome_strand>
        <mrna_strand>GA-AAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACATGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCCGGTTACGGGTCAAAAAGTACTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATACGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAACACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGAGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGAGTAAAACCACATCCACCGGATATGGAGATGATTCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGAGTAAAACCACATCCACCGGATATGGAGATGAATCTGGTGGGTATGGGAGTAAAACCAAATCCACCGGGTATGGAAATGATTCGGGTGGGTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330845" ref_strand="+" ref_description="SGN-E330845 [cTOD-10-J7]">
      <seq>aattttatcaatcgagaagaaaataatttttaaaatgaacacaatcatgtcttacggtgaaagtgagtatggtggaagtggaattggatccggacagggaaaacccaaaaagtcacatggatctggatatggacgaaacgacgatgatgagccccaatctgaatatggatctggttacgggtcaaaaagtgctactcatgactctgatgatcagtacgggtcaggtggatatgggagcaaaaccggatccggtgggcatggaaggaaaagtgaatacggggataagagttcggaatatggatctggttatggaaatgaatcgggtggatatgggagtaaaaccacatccaccgggtatggagatgattcgggtgggtatgggggtaaaaccacattcaccggatatggagatgattcgaatgggtatgggagtaaaaccacatccaccgggtatggaaatgattcgggtggatatgggagtaaaaccacatacaccgggtatggagacgattcgggtgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="73297" stop="72176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72997" g_stop="72476" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E330845" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72997" e_stop="72476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATCAATCGAGAAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGGGTAAAACCACATCCACCGGATATGGAGATGATTCGAATGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAAATGATTCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGACGATTCGGGTGGGTA</genome_strand>
        <mrna_strand>AATTTTATCAATCGAGAAGAAAATAATTTTTAAAATGAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGGGTAAAACCACATTCACCGGATATGGAGATGATTCGAATGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAAATGATTCGGGTGGATATGGGAGTAAAACCACATACACCGGGTATGGAGACGATTCGGGTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361905" ref_strand="+" ref_description="SGN-E361905 [cLPP-11-A3]">
      <seq>aaagaaaataatttttgaaattaacacaatcatgtcttacggtgaaagtgagtatggtggaagtggaattggatccggacatggaaaacccaaaaagtcacatggatctggatatggacgaaacgacgatgatgagccccaatctgaatatggatccggttacgggtcaaaaagtactactcatgactctgatgatcagtacgggtcaggtggatacgggagcaaaaccggatccggtgggcatggaaggaaaagtgaacacggggataagagttcggaatatggatctggttatggaaatgaatcgagtggatatgggagtaaaaccacatccaccgggtatggagatgattcgggtgggtatgggagtaaaaccacatccaccggatatggagatgattcgggtggatatgggagtaaaaccacatccaccgggtatggagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="73281" stop="72236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72982" g_stop="72536" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E361905" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72982" e_stop="72536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGGGTAAAACCACATCCACCGGATATGGAGATGATTCGAATGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAAATGA</genome_strand>
        <mrna_strand>AAAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACATGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCCGGTTACGGGTCAAAAAGTACTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATACGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAACACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGAGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGAGTAAAACCACATCCACCGGATATGGAGATGATTCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330847" ref_strand="+" ref_description="SGN-E330847 [cTOD-10-J19]">
      <seq>agtggaattggatccggcagggaaaacccaaaaagtcacatggatctggatatggacgaaacgacgatgatgagccccaatctgaatatggatctggttacgggtcaaaaagtgctactcatgactctgatgatcagtacgggtcaggtggatatgggagcaaaaccggatccggtgggcatggaaggaaaagtgaatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="73221" stop="72420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72921" g_stop="72720" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E330847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72921" e_stop="72720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACG</genome_strand>
        <mrna_strand>AGTGGAATTGGATCCGG-CAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="79709" stop="78814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79409" g_stop="79088" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79409" e_stop="79088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAACTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACATTTCTGTGTATAAAGTGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="79709" stop="78814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79409" g_stop="79105" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79409" e_stop="79105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAACTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACATTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296334" ref_strand="+" ref_description="SGN-E296334 [cLET-19-P5]">
      <seq>agaaattggtgctgttttggccgttatgaggagaaatgtaaggtgggggttccattatgctgctgctgatgatcagctagagcatcctctcatacattctttcaaggaattacggaaaaatgtcttctcatggaaacatcactggaacagagttgatccactcctatatcttcagcctttcttggatgtgattcaatctgatgaaactggtgcaccaataaccggtgttgcactgtcttctgtttacaaattcttaacccttgaaataattgattcatctatcatgaatgtggagaaagctttatatcagatagttgagaccgtgacaagttgccgctttgaagtgactgatcctgcctctgaggaagtggtactgatgaagatacttcaggttcttttggcttgcatgaaaagtaaggcatcagaaaatttaagtaatcatcacgtgtgcaacattgtaaacacttgctttcggcttgctcatcaagctagtgccaaaagtgaactgctgcagagaatagcaagacacacaatgcatgaattggtgagacacattttcgctcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="86315" stop="85149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86015" g_stop="85449" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E296334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86015" e_stop="85449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGGTGCTGTTTTGGCCGTTATGAGGAGAAATGTAAGGTGGGGGTTCCATTATGCTGCTGCTGATGATCAGCTAGAGCATCCTCTCATACATTCTTTCAAGGAATTACGGAAAAATGTCTTCTCATGGAAACATCACTGGAACAGAGTTGATCCACTCCTATATCTTCAGCCTTTCTTGGATGTGATTCAATCTGATGAAACTGGTGCACCAATAACCGGTGTTGCACTGTCTTCTGTTTACAAATTCTTAACCCTTGAAATAATTGATTCATCTATCATGAATGTGGAGAAAGCTTTATATCAGATAGTTGAGACCGTGACAAGTTGCCGCTTTGAAGTGACTGATCCTGCCTCTGAGGAAGTGGTACTGATGAAGATACTTCAGGTTCTTTTGGCTTGCATGAAAAGTAAGGCATCAGAAAATTTAAGTAATCATCACGTGTGCAACATTGTAAACACTTGCTTTCGGCTTGTTCATCAAGCTAGTGCCAAAAGTGAACTGCTGCAGAGAATAGCAAGACACACAATGCATGAATTGGTGAGACACATTTTCGCTCACCT</genome_strand>
        <mrna_strand>AGAAATTGGTGCTGTTTTGGCCGTTATGAGGAGAAATGTAAGGTGGGGGTTCCATTATGCTGCTGCTGATGATCAGCTAGAGCATCCTCTCATACATTCTTTCAAGGAATTACGGAAAAATGTCTTCTCATGGAAACATCACTGGAACAGAGTTGATCCACTCCTATATCTTCAGCCTTTCTTGGATGTGATTCAATCTGATGAAACTGGTGCACCAATAACCGGTGTTGCACTGTCTTCTGTTTACAAATTCTTAACCCTTGAAATAATTGATTCATCTATCATGAATGTGGAGAAAGCTTTATATCAGATAGTTGAGACCGTGACAAGTTGCCGCTTTGAAGTGACTGATCCTGCCTCTGAGGAAGTGGTACTGATGAAGATACTTCAGGTTCTTTTGGCTTGCATGAAAAGTAAGGCATCAGAAAATTTAAGTAATCATCACGTGTGCAACATTGTAAACACTTGCTTTCGGCTTGCTCATCAAGCTAGTGCCAAAAGTGAACTGCTGCAGAGAATAGCAAGACACACAATGCATGAATTGGTGAGACACATTTTCGCTCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747551" ref_strand="+" ref_description="SGN-E747551 [GI|7672781]">
      <seq>ggcacgaggtggaaggaaaacatcaaaggaaaatggacggaacagcagtgcagggcaccagcagtgttgactcatttttacggaactataaactcgggaaaacacttggcattggatcgttcggcaaagttaaaatagctgaacatacgttaacagggcacaaagttgctgtcaagattcttaatcgtcgaaaaatcaggaatatggacatggaggagaaagtccgtagagaaatcaaaatattgagattgttcatgcatcctcatattatacggctttatgaggtcatagagacaccatcagatatatatgttgtgatggagtatgtgaaatctggcgagttatttgattacattgttgagaagggcagattgcaggaggatgaagctcgtaacttttttcagcagataatttctggtgtggagtactgccatagaaacatggtggttcatagagaccttaagcctgaaaacctccttctggactccaaatggaatgtgaagatcgcagattttggtttgagcaatatcatgcgcgatggtcattttctgaagacaagttgcggaagcccaaactatgctgccccagaggttatatcaggtaaattgtatgctggccctgaggtagatgtatggagctgtggtgttattctttatgctcttctctgtggcacccttccgtttgacgatgaaaacatacccaatctttttaagaaaataaagggtggaatatatactctgcccagccatttatcagctggtgcgagggatttgattccgaggatgcttatagtcgacccaatgaagcgaatgactattcctgagattcgcctgcacccttggttccaagctcatttgccacgctatttggccgtgcctccaccagatacaacccaacaagcaaagaagatcgatgaagagattcttcaagaggtggttaagatgggatttgacaggaacaaccttactgagtctcttcgcaatagagttcaaaatgagggcactgttgcatactatctgctcctggacaatcgccatcgtgtttccactggctatcttggagctgaatttcaggagtccatggaatatggttacaaccggatcaattctaatgaaaccgctgcttcccctgttggtcaacgtttcccaggaataatggattatcagcaagctggtgcaagacagttccccattgaaagaaaatgggctcttggcctccagtctcgagcgcatccacgtgaaataatgactgaagttttgaaagctctgcaagaactgaatgtatgttggaaaaagattggtcagtataacatgaaatgtcgatgggttcctagcttacctggtcatcatgaaggcatgggtgttaattccatgcatgggaatcagttctttggagatgattcatccatcattgagaatgatggggccacaaagttaacaaatgtggtcaagtttgaagttcagctttacaaaaccagggaggagaagtacttgcttgaccttcagagacttcagggtccacaattcctcttcctggatctctgtgctgcttttcttgctcagcttcgagtactttaaagtctccgaaataaggagctaagttggaaaaagcccatgcttgtatataattggtataccagctcagttactgcattttgtcttgttaacaaattccaccctgcttggtcagaggtgcctagcaactctttttttcttttgattcgctaggagatctagctcactctcttttttaacgtttatggaatttcagttacctacagtatctacttacagattgaactgcaagatgagcgcgatgtctgtctgtgacccattccctcttctccccttatcgacgatcatttggagtccaacgaagattttcttgtgtcaaatttgaaatgtttgtctgaataaaaacaagtcccaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="103365" stop="90874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103073" g_stop="103046" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103045" i_stop="101133" i_length="1913">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101132" g_stop="100939" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="222" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100938" i_stop="100390" i_length="549">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100389" g_stop="100205" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="407" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100204" i_stop="100117" i_length="88">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100116" g_stop="99934" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="590" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99933" i_stop="96808" i_length="3126">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96807" g_stop="96676" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="722" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96675" i_stop="96082" i_length="594">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96081" g_stop="95896" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="908" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95895" i_stop="93663" i_length="2233">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93662" g_stop="93573" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="998" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93572" i_stop="93502" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93501" g_stop="93418" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="999" r_stop="1082" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93417" i_stop="93191" i_length="227">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93190" g_stop="93053" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1220" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="93052" i_stop="92631" i_length="422">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92630" g_stop="92388" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1463" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="92387" i_stop="91642" i_length="746">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91641" g_stop="91175" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1464" r_stop="1930" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1931" polyA_stop="1948"/>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E747551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1930</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103073" e_stop="103046"/>
          <exon e_start="101132" e_stop="100939"/>
          <exon e_start="100389" e_stop="100205"/>
          <exon e_start="100116" e_stop="99934"/>
          <exon e_start="96807" e_stop="96676"/>
          <exon e_start="96081" e_stop="95896"/>
          <exon e_start="93662" e_stop="93573"/>
          <exon e_start="93501" e_stop="93418"/>
          <exon e_start="93190" e_stop="93053"/>
          <exon e_start="92630" e_stop="92388"/>
          <exon e_start="91641" e_stop="91175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTGTGGAAGGAAAACATCAAAGGTTTGATTCTGTCAAGACAACAATTTTTAGAATTGTAATCATAATTTATTTTAGGTTATAAATAATAAAACATAGAATCTTTTTTAAAAAAATTGTTTAATTCTATAACATAGAATCTAATTAATTTAATCAAATTTAATTTAATTAATTAATTATTATCAATAATTAGTTTCTAGTATTTTTAAGAAGTTTTTTTTTTTCTGTGAATACCAGGGGGGAAAAATTAACAGAATCAAAAATCAGTGAACTCCATTCTTGTGCTTCTGCAGCCATCCTTACCCCCACCCCCCGAATCTCCTCCACCCCACGACTGGCCTCAACTTCTTCCCCCTGTATTCCAGGAGGCCATTGATACTCTCTTTCATCACCAAATGTTGAAGATAATCGCTTGATTTTCCCAATTTTCATATTTTGTTGTTGAATTTCTTCAATCTGCTTCTTGGGGTTTAGCTTCTGCCAGGTGGGTTTGCATGTTTGATTTCGTTTTTATTGGTAAAAAATTTATTCTCTATCAATATTTATCAGATCTGTTCTTGCTAGGGTTTTTTTCAAGAATATGACCGGTTGGGGGGTTAGATAATTGGGTAATTTCAAGATTTGGTTTTGGGGTTATGGGATTTGATTGTTTTTCGGCATTTAGGGTTATAAACGGGGTGGGGTTGGGGATTAATTCGACATTTGACTATGGGGTTGTGAATTTCTTTATCAAGTTAGCTCCTTTTCATTTTTTTTAGGGTGTGGGTACTGTTTATTGAGAATTTCTCTGTCGATTTTTTGAGAATTTGAGTGATAAAACGTGCCAATTTTAGCATAGGTGGGGTGGGGGTGGGGTAATTGAAGCTTTGTGACAGGTAGTGAGATCATGATGCCTTAGGTTTGGCTCCTCATTAGCATTTGGGTCTGTGTTTAAAGTATATGTTGGTATTATTCTTACTAGTGTGTTAAAGAGGGTGTCTATCGATACCTGTTGGTGAATTGTAAATTTTGGAAATATATTCCAACTTATGGGCAAAAAGAAATTACTATAGGGAGATTACAATCCAATTATAGATAAGACATTACTGACGATTAGTTTTATTTGAAAAGACATTATTTATGTACCTTTTAGGCCTTCAAAATTCTTCCTCTTTCAGTTATCATGGAAAGAGAAAGGTATATATGTTGTTCTAAAAATGCAATCTTTGGCACCCCGAAGCACCGGCAAAGGTATATATGTTGTTCTAAAAATGATGGCTTACTATCGTTTGTCACTTGAGACAATTAAGCTCCCTACAGATACTAGTATATGCAACTTTGGTAGATGAGTTAGGCAGTTGTGCATTGTGCCTATATTGCTCGGATTCTTCAAAATCCTAGTCACACACGCAACGTAGGTGTGGGATCTGCACTGGATTTGGTTAATTTACCTTGGGAGTACTTTGACCACATTTATGACTGAAAACTTCTAGTTCAATAGCTTTAATTAATCAAAAAATATTCTTTATATGTCATAATCTACATTTATTGGCATATCTCAGCACCCGTACCCGTACTTGAATCCATACCCCAAATCCTAAAACTTATGTGATGATGAATCTAACTGTCAGATCCGCACCCGTATCAATTACCCGCACCCGAATCCGAGCAACTTAGCATTGTGCTTTCGGAGTATCTTCGCTTCCAAGGAAGAATCCATTTTGAAAATAATCTCAAATTTATTACTCACATCTAGCAATTAATTATGGTACTAGCTAGTAATTTGTTGGAGGTAGCCAGCGTATTCTTAACGCTGAAGAATATAACTTTACCTTTCTAAAACAAATCTAGCTATCAAATTTTTCTTTTTGAGTGTTATTACAGGCGGAGGTACCTTTTGGAGTGTTTTTTGTGCCTTTTCTAAATCTAATTTGCCTCTAATTTTCTTGTGTTGATAGGAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAGGTATAGAAGTTAGAGAGTGCAGTCACATTCTCCCTTACTATCCAAAGTATATGAACATCGTTTCTCCTTTTTACCCCTAATTTTTAAGGTAAAAAGGGTAAGAAGTGGTGAGGTTTGAAGAAGGACAAACTGAATCTTGCAAGATGAAGATTGATGTTTAACCTAATGTTTGGCCTGTTTGTTCCTTTTAATATTTGTTTTTTTCTGTTCTATCTGACCTGGAACCTATATAAATGGATGATTAGATTGTCAATTGATTTGAATGTGGTTGAATTTTTCTTCTACTTTAATTTAAACGATAATCTTTGATTCTTTTTCACTCAAAATTTGCATTGAACTCCATATATGAAATTTTTGTTCTCAAATCTCTAGGTGTTTGTGGTTTGATTAGACTAGTGCCCAGTAGGATATACCTTGATGGAGGATGATTTTTGTTCTGAATGATTGGACATTGCTTGCTCTTGGTTCTAGGCTACAATTGTATATTTTTTTTCCTGTTTATGGATGTCTGGACTGTGTTAAGAGTTTTATATTGCTGAAATTCTGCAGTCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAGGTGGATGTGCCACTTCCTTGAATGAGTTTTTTCATGCTGTTTAACTTTTTTAAAGTAGTTATGGTATTCTAATTCTTCTAAAAAACAGATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAGGTACTGAAGCTTCTGATTCGAGTTAACAGCAATTACTTTTTGTGGTTCTGCCTAACTGATTGAAAAAAGAGTTGTGATTCATCACAATACTTAGAATGTATGCTGCATTTTGACTTGTCAGTATTTTTTTACATGCTCAATACATAGTCTAACCCCCCTCCCCCACCCACCCAAAAATGCTGTGTACTCAAATCCCTTTTACACACCCCTTGATAATGGGAATCATTGGAGTGGGAAAATTTTCTTGAAATTGGTAATAACAATATAATTTAATGGCCAAGAGGAGGAGAAGAAACAATCCAAATGGTTCCCAGATTAGTTTCGTTTAAATAGATTTGTCTATTTCAAAGTGAGGAAGAAGAAGAAGAAGAATGTGGAAGAATAATATTTGATTAATTTTTGATCTTTTTACAATTTCTGAAGTATTTTTCTTTTTCTATATTGTGAAATGTTTTGGGTTGTGATTGGTGTGTGAAATACACTTATCAAAGGAAAGTGATGAAACATAAAAATGGTGTGTATTAGACATAGGGGTGTCATATTAGGCCCAAACCCATTTGGCCCGCACATGTTTTGAATGGTTTGGGCATGGGCTACATACAAATGAGTTACGTTTGGGTTCTACTCATTTTAACCCATGAAGGAAGCTAAGCCCAAACTCAACCCATCATTTTTCATTTTTTTTTGAAGACAAAGGAAACCGATAGTTGCTATCCTTTGGGTGTGCACATGGTAAGACCCCGCTTTTATGCAATAGCTCGCAAACCACACATGAGCGGTGATTCACACTAGGCAATCCGGTGCGACGAGCTCCACCCAGAAGGCAAACCTATTGCTTTTGTCGGTTTTGAACTTGAGACCCCCAAAATGGAAGTCCCGCCCAAACCATTTGGCCATCCCGAAGGGTATAATTTTTCAAACTTCAATGTCAATAATTAGAGTTAAACTCATGATTATCCAAGATAAATGTCAAGTTGTCATCATTTGGATTATCTTTATGACTTTTATTTTTTTTGACCTTTTAAGTCAATTAAATAAAAGAAGAATGTCACTATGTGGAGATTTTATGCAACATATAATTAATGATGATATTACTTTTTTAAATTTATTTAAGTTTTTTGACCTTTTCAATGGCTTAACAGGAAGTCCTATTTACTTTCATCATCTTTTTTTTGGGTTATATTTCCCTTTATTATTAGATGTTTGTTTTTGGTCAAGTCATATTAGAATAAATTTATTAATTCAAAGTCTATACAACTATAAAGATTAAAATGTCAGGAATAGATATATGTTTCATATTGAATTTAATGATAATCACCATCAATATTTTAAATGGCGGACTTATAATTTATATATTTATTTGCTGGGATATGAATGAGCATCTTTTTCCACTTTTTGTTAAAAAAATTAGTTTAAGGAGTTGCCTATTTAGAAGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTAGACTTCAAAAAGTGTTTTGGCAAATATAAAAAATAACTTACAATTAGTCAAAAATGACTTAAAATAAATAAAGAAGTGTTTGACAAGGTTAAAAATGACTTAAATAAGTTAAAAATGACTTTAAATAAGTCAAAAATCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTCGACTTAAAAATCATTTTATTTCAACTTTTTATTTTTGACTTAAAAACTACTTTTTTTTTATGCCAATCCAAAAGGCTCTTAGGCAATTCTATATTTCGGTACGGTCTTACCCTATAGGGTGATTTTGTTTTTGGTAAAAGAAAGAGAAATAATGTCTTTCTTTTACTCTTTAAAAAACATATTTTTTTTGTTGGACAAGTTTATCATTCAATTATTTTCTAATATTTAATAATTTAAAATCAACATTAAATCTTTACTAACTTAAACCATTTTAGATTTATTTTATTTCTTCTAACGAATATCAATTTGAACAGGAATCAATTATGATTTTTACGCCAACAAGGGTTGTGGTGAAACCAAGACCTCTAGGGTATGGAGTCGTCTTTGTTAGTGCTGTTAGGGAGCACTGTATCCCCAATGTGGGACTTTCGGGCACAAATCGGAGTTTAGTTGGGCTCCAATGTAGGGCACCAAATGGGAAACCAAAATAAATACATATGATTTTTACATATTAATATTAAATGCAAGATGCATAAAAGTTATATGCATTAATCATTCTCAAAAAATAAAAGTTATATGCATTAAATAGGATTTTGACCAATTATAGTTTTGTCCCAAATTAAAAGTCTACATATATTTTAAATGTATATCATCAATAGAATTGATGTCAGACACAAACAAATCATTTATTTAAATGCTCAATTCAAACTACAAACATCACCAAGGAAAAATTCCAAATATTTCTAAATTGTAACCATTTAGGACTAACTTTTTACTATAAGTATATAGGTATGGAGATCTGTTTGTGGATATTCGGTTGAGAATGTTTATTGATATCTTTAAAAGGAAAGAACAAAACTTGTATCAAGTTGGGCGGGCTGGGCTGTGGCGAGGGGCGAATGTAGGCCCAAATTATGTTGCGCGTGAACGCATGGTCTCTCTGCAAATTAGATATTTTTTGTACATATTCTTGAATTGATCTAATATTCTCTGATGACTCTCATACTCCAAAAAACTTGAATGGTGTATTTGGTTCAATGTTGAGTTTTGTACCCCAAGGTCTAGGGATCAATTCCTACTTACTACTCTCTTTTTTCTCTTTTTCTTTTAAAGTTGTGCACCCATGTTCTAGAAATCATAGATCCGCTCTGGCTATGACCCGTCATTTAGCTCATCTTGACCCAACTCATTTTAGCCAAGTAGGCTATGGGCATGGTTGAGCAAATGACCCATTTGTGGATTCAACCCATCTTAGCCCAAACAACCGATTTGCCACCCCTTAGGCATACTTTCTGGAAATGTTTGGTGTGTAAAGTTATTCCCATGGTTAAAGCGGCATATAAAATGGATTTGGTTACAACCTTGGGCTGTAAACTATGTATTGAGTCTTTTTTCCCTTTAAAAAGTGCTTTTTATGCTCAATTGGTTTTTTTTTTTGATAACCATTAAATTCTTTCTCTCTCTCTGTAGGTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAGGTATATTTTAGTTTACTTGAAATCCAGCATGTTAATGTTGATCCTTCTATCAATTTTATCCTATATTGATTTAGCTGCCCCGTGGCTTGAAATTGTGTGTTCCCAAATCTGCGACCTGATTGTAGTCCGACCCCGTTTCATGTTGGCGTTCAATTTTATTTGGTGGATAAAGGACTACAACTTTTGGCCCCATATCCAAACTTTCATTATTGCATACATAATAAGTCGGATGTTGTGTGGGTAGCTCCACTTTTCGTTGATGAGACTTGAGTATGTTACTGATTTATCCCATTTTACTATGCTGGTCAACTCTTTGTTTTCCAGTTCTGCCCTTCCAAATGTATCATGTCCAGGAAAAAAACAAAGATTGTTTAGATCTGCTGGGACCCAATCTCACCCTTTTTGTTGTTTTGGGTAAGTGGACATGATGTGAAATGTCAAATGGAAAAGGAAAAATGAAAACGATTCTCCATTGGAATGAATTTATGCTCCCTGTCTGTTCCCCAAAAAAGGGAGAGATTAGTTGATACATTTATTGAATCCATTGGGGTTGATCGCAGACAATTGCTTAACTTTATATCAATTTGTCTTTAGGGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAGGTTAGATTGAATGTACATTTGACTATTAATGATTAGTGTTTTTCTGCCTTAATGTTTCACATGCAACAAGTTATACATGGCAGGATAGAAATTTTCCCCAGCTTTTACTTATTTGTTATCCCATATAAACGGCACTAAAGCAGTATTCTTATGATCAAACACAGCTTATTTCTTGATTGTAATGCGATGGAATCACTCTAGGCAATTCTCTATCTTCTTTTGCATCTTTGATTGCCTTAAATGGTAGATTCTATTTATTTAACCTATCAAAATCTTTCTGTCACCCTCCCCTGCGCCCAGGTAAAAGAGTGAAAAAGAATGATCAGAATTGCTCATATATCTTGAGCAGTTTGTATAATTTAGGAAATGTTGGAGGTACCTGAACAATGGGGAAAGTTTATGATTGCTGTGGAAGTTCCTGTCATCAGAGCCTCATAAATCTTCCTTTTTGGTAAAAAGACATCGAAAAAACAAATTAGAATAAAGACATTAAAAAAGTTGATCAGTAGTTTCCCCTTATGGCAAACACACAATTGTGCATCTTAAAGAAGGGTCAGATTTGTGATTTGTCTTGCTGTCACAACCATATCTTGTTGCGCTAGATATTCTCTTCAATGTGTTGATCACGATATCCTTGTTCACTCATCCAACCTTATTAGCTCTCTAACCCACTTCCGTAAATATCACATGTTTATCTAATAAATCAGGATCCATTTTGGGTCCTTTGAATAAAAAATAAACGTTTTAGTAGTTCTGACCTTCTTCACCCTTAGTTTGTGATGAAGTCACAATCTAGTTTTGTTAGTTTTACAGTTTTACTCCAGGTCCATTCTGCGAAAACCACCACCAGATAAATATAAGCAGATAGTTCAGCTGCTTATTATATTTGGGAAATTCTTCCAAGGTCCAAGGATGTGGACTAGGGTCAATAAAGTGGGTGCAAACCTTGTAGATCAGGGTCTCCTAATCCCATAGAGACAAAAAACACTTGTTATTTCGTTCCTTATGTTTAAGCCCTAGTGAGTAGTGATAAGAATCGGGTTTTACTTGAATAAACTAGAAAACAATGCGAAAGCAAAAATACAAAGATTAATGACAAGAAATTAGAGAATAAAATTCCCTAGTTCAAAAGTAGTCCTAAGAATCCTAATTGATCTTAGTGTTCAGAAATTAGCAGATTAGAGCTAATTTATGATACTGATAGAGTCAATTCAAGAACTTAGATCAATAATTACCTTCTTTAATTTACTAATAAGAGCCAAAGATATCAAGTTAATTACCTCTTAAAGATTTGTTCTTAAAAGGTTGTAATCCCCAATAGCCATACACAGGTGTAAAGTAGATAAACTCTCAATTAACAATAAAGTTGTCTACACAAAAATAATAAAATCTACCCCTATATATTGGGGAAAACTATCCAAATAGAATTGGATTAGAATCTACTTTTATGGAAATAATAACTAAAATCTAACCAGGAAACTTTTAGCTAGGAAAGCATATAAGAATTTTATAATTCTTCCCCAAAGAAATAAGGAAAAGTTTTCAATTTTGACCAGAACACGTGGGCCCTTCCCAAGCCACTTGTATGCGACTCTTTTCTCCCTTCTGGGTGAGTTTTTTAAGCTCATTCTTTTAGGCAGAAATTTCAGCCGCATGTGGGCCTCAATCATCTTCCTTTTGGGCTTGGACTTGAACCATAAAATATGCGTAGCACTTAGTCCATTCTTCTCATCATTCTTGGACTCGTTCTTGGGCTTTTCTTCCATGCTAACCATCTTCTTGATTTCCAATTGAAACCCTACAATCTTGACTTGCAACTCCTTAGCTCGAGACCTTGACGATTGTGCTATTAGGGCTTCTACAACATCATCCTGGTGCTCAGAGTAATCAGGTATGTGCAGGGGGGAAGGTAGTAGGAGCCCAGTGAGGTGCCTGTAAGCTGGCATGAATACAATAGTTGGCCAAAAGAATTGTATTTATGAATTTTCTATATTCCTTGATATGCTTGGGATGTCTTGGTGCATCACCGCATCTTCTTTGATTTATTTATTTATTTTTCTAAATGCTTCTATTATCACATTTACTACAATTTGACTTGTATGGTTGTTGGGACTTTCTTTGTGGTGATTTCATATGTTAAGCTTTTTGTATGACCTTACAGCTCTTAACATGGTTTCTTAAACCAGAAGAATTCTCATCTAGTCAAAATATCCTTGAAAATATCTGATTGCAGATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAGGTAAATTTTCGTTATCAGCTATCTATTTTTTCCTTGATTGCCCTTTTCCCTCAATTTTAGTTGTATTTCAGGGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATGGTGCGTCTTTGCTTGTTTTTATTGAATAAAGCTGCAGTTTCTTTCCATCTGCTTTCGTGAGAAGGAGCCAATTAGTTTGCCAATATTTAATGAGTTTCTTGTCCATAAATATGTTACATCTTTATGACAGTCACTGAGTTCATCAACATTAAGCTTGCGTATGTAGTTGTGGTTGATTTTTTTGCTGTTATATGTGTTTAATTGGATGTATAAAAATGCCCTTGCAGGAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAGGTTGGTTTGCTGCCTCATGCAAATAACTAACTTTGCTCTCTCTTATATTTTTTGTTTACTAATCATTGGAGTCATATGACCCTGCTCCTCTACCTTCTCTTACCCCCCTATATTGAAGCCCTGGGGGCTGGATATTCATGTTAACATGTGACTGGAGGGAAGGGCCAAGTATGAGACCTTTTTTTTATTTATTATGGAAATTGAAGTACTAATAAGCTTTGAAAACTTCCGTGATCCTATTTTATATTCAATCTGATTAACTTTGAAAACATCTTGCCAATTCCATCTATAATAAGTATAGGCTCATGCATGTACAACCTTTGTTAATTTGATGGGTTCTCTTGAGAAATTTTCTAGATAATTTGCTTCTAAATTCTTTTCAACAGTATGCTATACATAATAAACGCCTTTTTTTGCTACAGTCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAGGTATGAAAAATTTCATGGATCATACATCTAGTTTCTGTCTAACTTCTTCATACAGGAGTACATGAATGTTGCTTTGGCCTTAAGATAGAATTTAGAGGGCACTTGTATATCATGAAAATAAGAAAAGCTTTAGTAACACGGTCAATCTTAATGACATTAACAAAGAATTGGGTGAGAAAGTAGTCTGCACTAGCAGTAATGAAGTATGTTGCACATAATTGGTGGAAGTCTTACTTGTATCCCTGTATTCTTTCTAAGAAAGTAGCTCGGTTCTTTGTGCTTGCCTATGTGTTTTAGATGCAAATCTTTGGAAAATTACTTGTGACTAAATCTCACCATGTCGAATTTTATGATACTGTAAATCCAAGTTGCTGGTCTTTTTGTTAGATTTACCTCTATTATTAGAATTTGAGGGGGGGTTGTCACTGCCTCACTGGTGACTCAGAAAAGTGCTTTTTAGGTTGGTTTGAACATTTGAATGCATGTGAATTGGTCCTTGTATTATCTGAAGAGGACAAAGTCTTACTTCTTTGGTGATTTGATCACTTCTGCCCAAAACCTTGGTAGGCAAAGTAACCTGATATTTGTGTTGGTAAGAGGTAGTAAGTACCTGTTGGAATTAGCCGAGGTGCACACAAATTGGCCCGGATAGGAACACTATTGTTTGGATCTGCTGGTTTTCTGAGTCTTGCACAGCTTGTATGGTTCTGAAATTTTATTTGATGTTTGTGTTCCTTTTGGCGCAGCTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTTTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAACTGCAAGATGAGCGCGATGTCTGTCTGTGACCCATTCCCTCTTCTCCCCTTATCGACGATCATTTGGAGTCCAACGAAGATTTTCTTGTGTCAAATTTGAAATGTTTGTCTGAATAAAAACAAGTCCCAAC</genome_strand>
        <mrna_strand>GGCACGAGGTGGAAGGAAAACATCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAG........................................................................................ATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAG.......................................................................GGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATG...................................................................................................................................................................................................................................GAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTTTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAACTGCAAGATGAGCGCGATGTCTGTCTGTGACCCATTCCCTCTTCTCCCCTTATCGACGATCATTTGGAGTCCAACGAAGATTTTCTTGTGTCAAATTTGAAATGTTTGTCTGAATAAAAACAAGTCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343856" ref_strand="+" ref_description="SGN-E343856 [cTOF-12-B17]">
      <seq>gggctcttggcctccagtctcgagcgcatccacgtgaaataatgacctgaagttttgaaagctctgcaagaactgaatgtatgttggaaaaagcttggtcagtataacatgaaatgtcgatgggttcctagcttacctggtcatcatgaaggcatgggtgttaattccatgcatgggaatcagttctttggagatgattcatccatcattgagaatgatggggccacaaagttaacaaatgtggtcaagtttgaagttcagctttacaaaaccagggaggagaagtacttgcttgaccttcagagacttcagggtccacaattcctcttcctggatctctgtgctgcttttcttgctcagcttcgagtactttaaagtctccgaaataaggagctaagttggaaaaagcccatgcttgtatataattggtataccagctcagttactgcattttgtcttgttaacaaattccaccctgcttggtcagaggtgcctagcaactctttttttcttttgattcgctaggagatctagctcactctcttttntaacgtttatggaatttcagttacctacagtatctacttacagattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="92942" stop="91006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92630" g_stop="92388" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="261" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92387" i_stop="91642" i_length="746">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91641" g_stop="91298" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="605" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E343856" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92630" e_stop="92388"/>
          <exon e_start="91641" e_stop="91298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGAGCGCATCCACGTGAAATAATGA-CTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAGGTATGAAAAATTTCATGGATCATACATCTAGTTTCTGTCTAACTTCTTCATACAGGAGTACATGAATGTTGCTTTGGCCTTAAGATAGAATTTAGAGGGCACTTGTATATCATGAAAATAAGAAAAGCTTTAGTAACACGGTCAATCTTAATGACATTAACAAAGAATTGGGTGAGAAAGTAGTCTGCACTAGCAGTAATGAAGTATGTTGCACATAATTGGTGGAAGTCTTACTTGTATCCCTGTATTCTTTCTAAGAAAGTAGCTCGGTTCTTTGTGCTTGCCTATGTGTTTTAGATGCAAATCTTTGGAAAATTACTTGTGACTAAATCTCACCATGTCGAATTTTATGATACTGTAAATCCAAGTTGCTGGTCTTTTTGTTAGATTTACCTCTATTATTAGAATTTGAGGGGGGGTTGTCACTGCCTCACTGGTGACTCAGAAAAGTGCTTTTTAGGTTGGTTTGAACATTTGAATGCATGTGAATTGGTCCTTGTATTATCTGAAGAGGACAAAGTCTTACTTCTTTGGTGATTTGATCACTTCTGCCCAAAACCTTGGTAGGCAAAGTAACCTGATATTTGTGTTGGTAAGAGGTAGTAAGTACCTGTTGGAATTAGCCGAGGTGCACACAAATTGGCCCGGATAGGAACACTATTGTTTGGATCTGCTGGTTTTCTGAGTCTTGCACAGCTTGTATGGTTCTGAAATTTTATTTGATGTTTGTGTTCCTTTTGGCGCAGCTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTTTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAACTGCAAGA</genome_strand>
        <mrna_strand>TCTCGAGCGCATCCACGTGAAATAATGACCTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGCTTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTNTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697702" ref_strand="+" ref_description="SGN-E697702 [FA03DE06]">
      <seq>cttccgtttgacgatgaaaacatacccaatctttttaagaaaataaagggtggaatatatactctgcccagccatttatcagctggtgcgagggatttgattccgaggatgcttatagtcgacccaatgaagcgaatgactattcctgagattcgcctgcacccttggttccaagctcatttgccacgctatttggccgtgcctccaccagatacaacccaacaagcaaagaagatcgatgaagagattcttcaagaggtggttaagatgggatttgacaggaacaaccttactgagtctcttcgcaatagagttcaaaatgagggcactgttgcatactatctgctcctggacaatcgccatcgtgtttccactggctatcttggagctgaatttcaggagtccatggaatatggttacaaccggatcaattctaatgaaaccgctgcttcccctgttggtcaacgtttcccaggaataatggattatcagcaagctggtgcaagacagttccccattgaaagaaaatgggctcttggcctccagtctcgagcgcatccacgtgaaataatgactgaagttttgaaagctctgcaagaactgaatgtatgttggaaaaagattggtcagtataacatgaaatgtcgatgggttcctagcttacctggtcatcatgaaggcatgggtgttaattccatgcatgggaatcagttctttggagatgattcatccatcattgagaatgatggggccccaaagttaacaaatgtggtcaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="97023" stop="92096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96723" g_stop="96676" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96675" i_stop="96082" i_length="594">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96081" g_stop="95896" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="234" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95895" i_stop="93663" i_length="2233">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93662" g_stop="93573" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="324" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93572" i_stop="93502" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93501" g_stop="93418" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="408" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93417" i_stop="93191" i_length="227">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93190" g_stop="93053" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="546" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93052" i_stop="92631" i_length="422">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92630" g_stop="92396" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="781" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E697702" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96723" e_stop="96676"/>
          <exon e_start="96081" e_stop="95896"/>
          <exon e_start="93662" e_stop="93573"/>
          <exon e_start="93501" e_stop="93418"/>
          <exon e_start="93190" e_stop="93053"/>
          <exon e_start="92630" e_stop="92396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAGGTATATTTTAGTTTACTTGAAATCCAGCATGTTAATGTTGATCCTTCTATCAATTTTATCCTATATTGATTTAGCTGCCCCGTGGCTTGAAATTGTGTGTTCCCAAATCTGCGACCTGATTGTAGTCCGACCCCGTTTCATGTTGGCGTTCAATTTTATTTGGTGGATAAAGGACTACAACTTTTGGCCCCATATCCAAACTTTCATTATTGCATACATAATAAGTCGGATGTTGTGTGGGTAGCTCCACTTTTCGTTGATGAGACTTGAGTATGTTACTGATTTATCCCATTTTACTATGCTGGTCAACTCTTTGTTTTCCAGTTCTGCCCTTCCAAATGTATCATGTCCAGGAAAAAAACAAAGATTGTTTAGATCTGCTGGGACCCAATCTCACCCTTTTTGTTGTTTTGGGTAAGTGGACATGATGTGAAATGTCAAATGGAAAAGGAAAAATGAAAACGATTCTCCATTGGAATGAATTTATGCTCCCTGTCTGTTCCCCAAAAAAGGGAGAGATTAGTTGATACATTTATTGAATCCATTGGGGTTGATCGCAGACAATTGCTTAACTTTATATCAATTTGTCTTTAGGGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAGGTTAGATTGAATGTACATTTGACTATTAATGATTAGTGTTTTTCTGCCTTAATGTTTCACATGCAACAAGTTATACATGGCAGGATAGAAATTTTCCCCAGCTTTTACTTATTTGTTATCCCATATAAACGGCACTAAAGCAGTATTCTTATGATCAAACACAGCTTATTTCTTGATTGTAATGCGATGGAATCACTCTAGGCAATTCTCTATCTTCTTTTGCATCTTTGATTGCCTTAAATGGTAGATTCTATTTATTTAACCTATCAAAATCTTTCTGTCACCCTCCCCTGCGCCCAGGTAAAAGAGTGAAAAAGAATGATCAGAATTGCTCATATATCTTGAGCAGTTTGTATAATTTAGGAAATGTTGGAGGTACCTGAACAATGGGGAAAGTTTATGATTGCTGTGGAAGTTCCTGTCATCAGAGCCTCATAAATCTTCCTTTTTGGTAAAAAGACATCGAAAAAACAAATTAGAATAAAGACATTAAAAAAGTTGATCAGTAGTTTCCCCTTATGGCAAACACACAATTGTGCATCTTAAAGAAGGGTCAGATTTGTGATTTGTCTTGCTGTCACAACCATATCTTGTTGCGCTAGATATTCTCTTCAATGTGTTGATCACGATATCCTTGTTCACTCATCCAACCTTATTAGCTCTCTAACCCACTTCCGTAAATATCACATGTTTATCTAATAAATCAGGATCCATTTTGGGTCCTTTGAATAAAAAATAAACGTTTTAGTAGTTCTGACCTTCTTCACCCTTAGTTTGTGATGAAGTCACAATCTAGTTTTGTTAGTTTTACAGTTTTACTCCAGGTCCATTCTGCGAAAACCACCACCAGATAAATATAAGCAGATAGTTCAGCTGCTTATTATATTTGGGAAATTCTTCCAAGGTCCAAGGATGTGGACTAGGGTCAATAAAGTGGGTGCAAACCTTGTAGATCAGGGTCTCCTAATCCCATAGAGACAAAAAACACTTGTTATTTCGTTCCTTATGTTTAAGCCCTAGTGAGTAGTGATAAGAATCGGGTTTTACTTGAATAAACTAGAAAACAATGCGAAAGCAAAAATACAAAGATTAATGACAAGAAATTAGAGAATAAAATTCCCTAGTTCAAAAGTAGTCCTAAGAATCCTAATTGATCTTAGTGTTCAGAAATTAGCAGATTAGAGCTAATTTATGATACTGATAGAGTCAATTCAAGAACTTAGATCAATAATTACCTTCTTTAATTTACTAATAAGAGCCAAAGATATCAAGTTAATTACCTCTTAAAGATTTGTTCTTAAAAGGTTGTAATCCCCAATAGCCATACACAGGTGTAAAGTAGATAAACTCTCAATTAACAATAAAGTTGTCTACACAAAAATAATAAAATCTACCCCTATATATTGGGGAAAACTATCCAAATAGAATTGGATTAGAATCTACTTTTATGGAAATAATAACTAAAATCTAACCAGGAAACTTTTAGCTAGGAAAGCATATAAGAATTTTATAATTCTTCCCCAAAGAAATAAGGAAAAGTTTTCAATTTTGACCAGAACACGTGGGCCCTTCCCAAGCCACTTGTATGCGACTCTTTTCTCCCTTCTGGGTGAGTTTTTTAAGCTCATTCTTTTAGGCAGAAATTTCAGCCGCATGTGGGCCTCAATCATCTTCCTTTTGGGCTTGGACTTGAACCATAAAATATGCGTAGCACTTAGTCCATTCTTCTCATCATTCTTGGACTCGTTCTTGGGCTTTTCTTCCATGCTAACCATCTTCTTGATTTCCAATTGAAACCCTACAATCTTGACTTGCAACTCCTTAGCTCGAGACCTTGACGATTGTGCTATTAGGGCTTCTACAACATCATCCTGGTGCTCAGAGTAATCAGGTATGTGCAGGGGGGAAGGTAGTAGGAGCCCAGTGAGGTGCCTGTAAGCTGGCATGAATACAATAGTTGGCCAAAAGAATTGTATTTATGAATTTTCTATATTCCTTGATATGCTTGGGATGTCTTGGTGCATCACCGCATCTTCTTTGATTTATTTATTTATTTTTCTAAATGCTTCTATTATCACATTTACTACAATTTGACTTGTATGGTTGTTGGGACTTTCTTTGTGGTGATTTCATATGTTAAGCTTTTTGTATGACCTTACAGCTCTTAACATGGTTTCTTAAACCAGAAGAATTCTCATCTAGTCAAAATATCCTTGAAAATATCTGATTGCAGATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAGGTAAATTTTCGTTATCAGCTATCTATTTTTTCCTTGATTGCCCTTTTCCCTCAATTTTAGTTGTATTTCAGGGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATGGTGCGTCTTTGCTTGTTTTTATTGAATAAAGCTGCAGTTTCTTTCCATCTGCTTTCGTGAGAAGGAGCCAATTAGTTTGCCAATATTTAATGAGTTTCTTGTCCATAAATATGTTACATCTTTATGACAGTCACTGAGTTCATCAACATTAAGCTTGCGTATGTAGTTGTGGTTGATTTTTTTGCTGTTATATGTGTTTAATTGGATGTATAAAAATGCCCTTGCAGGAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAGGTTGGTTTGCTGCCTCATGCAAATAACTAACTTTGCTCTCTCTTATATTTTTTGTTTACTAATCATTGGAGTCATATGACCCTGCTCCTCTACCTTCTCTTACCCCCCTATATTGAAGCCCTGGGGGCTGGATATTCATGTTAACATGTGACTGGAGGGAAGGGCCAAGTATGAGACCTTTTTTTTATTTATTATGGAAATTGAAGTACTAATAAGCTTTGAAAACTTCCGTGATCCTATTTTATATTCAATCTGATTAACTTTGAAAACATCTTGCCAATTCCATCTATAATAAGTATAGGCTCATGCATGTACAACCTTTGTTAATTTGATGGGTTCTCTTGAGAAATTTTCTAGATAATTTGCTTCTAAATTCTTTTCAACAGTATGCTATACATAATAAACGCCTTTTTTTGCTACAGTCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTG</genome_strand>
        <mrna_strand>CTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAG.......................................................................GGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATG...................................................................................................................................................................................................................................GAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCCCAAAGTTAACAAATGTGGTCAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701694" ref_strand="+" ref_description="SGN-E701694 [FA16CG05]">
      <seq>aattttcatattttgttgttgaatttcttcaatctgcttcttggggtttagcttctgccaggaaaatggacggaacagcagtgcagggcaccagcagtgttgactcatttttacggaactataaactcgggaaaacacttggcattggatcgttcggcaaagttaaaatagctgaacatacgttaacagggcacaaagttgctgtcaagattcttaatcgtcgaaaaatcaggaatatggacatggaggagaaagtccgtagagaaatcaaaatattgagattgttcatgcatcctcatattatacggctttatgaggtcatagagacaccatcagatatatatgttgtgatggagtatgtgaaatctggcgagttatttgattacattgttgagaagggcagattgcaggaggatgaagctcgtaacttttttcagcagataatttctggtgtggagtactgccatagaaacatggtggttcatagagaccttaagcctgaaaacctccttctggactccaaatggaatgtgaagatcgcagattttggtttgagcaatatcatgcgcgatggtcattttctgaagacaagttgcggaagcccaaactatgctgccccagaggttatatcaggtaaattgtatgctggccctgaggtagatgtatggagctgtggtgttattctttatgctcttctctgtggcacccttccgtttgacgatgaaaacatacccaatctttttaagaaaataaagggtggaatatatactctgcccagccatttatcagctggtgcgagggatttgattccgaggatgcttatagtcgacccaatgaagcgaatgactattcctgagaatcgcctgcacccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="102946" stop="95662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102646" g_stop="102586" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102585" i_stop="101133" i_length="1453">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101132" g_stop="100939" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="255" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100938" i_stop="100390" i_length="549">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100389" g_stop="100205" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="440" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100204" i_stop="100117" i_length="88">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100116" g_stop="99934" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="623" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99933" i_stop="96808" i_length="3126">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96807" g_stop="96676" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="755" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96675" i_stop="96082" i_length="594">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96081" g_stop="95962" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="875" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E701694" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102646" e_stop="102586"/>
          <exon e_start="101132" e_stop="100939"/>
          <exon e_start="100389" e_stop="100205"/>
          <exon e_start="100116" e_stop="99934"/>
          <exon e_start="96807" e_stop="96676"/>
          <exon e_start="96081" e_stop="95962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATATTTTGTTGTTGAATTTCTTCAATCTGCTTCTTGGGGTTTAGCTTCTGCCAGGTGGGTTTGCATGTTTGATTTCGTTTTTATTGGTAAAAAATTTATTCTCTATCAATATTTATCAGATCTGTTCTTGCTAGGGTTTTTTTCAAGAATATGACCGGTTGGGGGGTTAGATAATTGGGTAATTTCAAGATTTGGTTTTGGGGTTATGGGATTTGATTGTTTTTCGGCATTTAGGGTTATAAACGGGGTGGGGTTGGGGATTAATTCGACATTTGACTATGGGGTTGTGAATTTCTTTATCAAGTTAGCTCCTTTTCATTTTTTTTAGGGTGTGGGTACTGTTTATTGAGAATTTCTCTGTCGATTTTTTGAGAATTTGAGTGATAAAACGTGCCAATTTTAGCATAGGTGGGGTGGGGGTGGGGTAATTGAAGCTTTGTGACAGGTAGTGAGATCATGATGCCTTAGGTTTGGCTCCTCATTAGCATTTGGGTCTGTGTTTAAAGTATATGTTGGTATTATTCTTACTAGTGTGTTAAAGAGGGTGTCTATCGATACCTGTTGGTGAATTGTAAATTTTGGAAATATATTCCAACTTATGGGCAAAAAGAAATTACTATAGGGAGATTACAATCCAATTATAGATAAGACATTACTGACGATTAGTTTTATTTGAAAAGACATTATTTATGTACCTTTTAGGCCTTCAAAATTCTTCCTCTTTCAGTTATCATGGAAAGAGAAAGGTATATATGTTGTTCTAAAAATGCAATCTTTGGCACCCCGAAGCACCGGCAAAGGTATATATGTTGTTCTAAAAATGATGGCTTACTATCGTTTGTCACTTGAGACAATTAAGCTCCCTACAGATACTAGTATATGCAACTTTGGTAGATGAGTTAGGCAGTTGTGCATTGTGCCTATATTGCTCGGATTCTTCAAAATCCTAGTCACACACGCAACGTAGGTGTGGGATCTGCACTGGATTTGGTTAATTTACCTTGGGAGTACTTTGACCACATTTATGACTGAAAACTTCTAGTTCAATAGCTTTAATTAATCAAAAAATATTCTTTATATGTCATAATCTACATTTATTGGCATATCTCAGCACCCGTACCCGTACTTGAATCCATACCCCAAATCCTAAAACTTATGTGATGATGAATCTAACTGTCAGATCCGCACCCGTATCAATTACCCGCACCCGAATCCGAGCAACTTAGCATTGTGCTTTCGGAGTATCTTCGCTTCCAAGGAAGAATCCATTTTGAAAATAATCTCAAATTTATTACTCACATCTAGCAATTAATTATGGTACTAGCTAGTAATTTGTTGGAGGTAGCCAGCGTATTCTTAACGCTGAAGAATATAACTTTACCTTTCTAAAACAAATCTAGCTATCAAATTTTTCTTTTTGAGTGTTATTACAGGCGGAGGTACCTTTTGGAGTGTTTTTTGTGCCTTTTCTAAATCTAATTTGCCTCTAATTTTCTTGTGTTGATAGGAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAGGTATAGAAGTTAGAGAGTGCAGTCACATTCTCCCTTACTATCCAAAGTATATGAACATCGTTTCTCCTTTTTACCCCTAATTTTTAAGGTAAAAAGGGTAAGAAGTGGTGAGGTTTGAAGAAGGACAAACTGAATCTTGCAAGATGAAGATTGATGTTTAACCTAATGTTTGGCCTGTTTGTTCCTTTTAATATTTGTTTTTTTCTGTTCTATCTGACCTGGAACCTATATAAATGGATGATTAGATTGTCAATTGATTTGAATGTGGTTGAATTTTTCTTCTACTTTAATTTAAACGATAATCTTTGATTCTTTTTCACTCAAAATTTGCATTGAACTCCATATATGAAATTTTTGTTCTCAAATCTCTAGGTGTTTGTGGTTTGATTAGACTAGTGCCCAGTAGGATATACCTTGATGGAGGATGATTTTTGTTCTGAATGATTGGACATTGCTTGCTCTTGGTTCTAGGCTACAATTGTATATTTTTTTTCCTGTTTATGGATGTCTGGACTGTGTTAAGAGTTTTATATTGCTGAAATTCTGCAGTCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAGGTGGATGTGCCACTTCCTTGAATGAGTTTTTTCATGCTGTTTAACTTTTTTAAAGTAGTTATGGTATTCTAATTCTTCTAAAAAACAGATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAGGTACTGAAGCTTCTGATTCGAGTTAACAGCAATTACTTTTTGTGGTTCTGCCTAACTGATTGAAAAAAGAGTTGTGATTCATCACAATACTTAGAATGTATGCTGCATTTTGACTTGTCAGTATTTTTTTACATGCTCAATACATAGTCTAACCCCCCTCCCCCACCCACCCAAAAATGCTGTGTACTCAAATCCCTTTTACACACCCCTTGATAATGGGAATCATTGGAGTGGGAAAATTTTCTTGAAATTGGTAATAACAATATAATTTAATGGCCAAGAGGAGGAGAAGAAACAATCCAAATGGTTCCCAGATTAGTTTCGTTTAAATAGATTTGTCTATTTCAAAGTGAGGAAGAAGAAGAAGAAGAATGTGGAAGAATAATATTTGATTAATTTTTGATCTTTTTACAATTTCTGAAGTATTTTTCTTTTTCTATATTGTGAAATGTTTTGGGTTGTGATTGGTGTGTGAAATACACTTATCAAAGGAAAGTGATGAAACATAAAAATGGTGTGTATTAGACATAGGGGTGTCATATTAGGCCCAAACCCATTTGGCCCGCACATGTTTTGAATGGTTTGGGCATGGGCTACATACAAATGAGTTACGTTTGGGTTCTACTCATTTTAACCCATGAAGGAAGCTAAGCCCAAACTCAACCCATCATTTTTCATTTTTTTTTGAAGACAAAGGAAACCGATAGTTGCTATCCTTTGGGTGTGCACATGGTAAGACCCCGCTTTTATGCAATAGCTCGCAAACCACACATGAGCGGTGATTCACACTAGGCAATCCGGTGCGACGAGCTCCACCCAGAAGGCAAACCTATTGCTTTTGTCGGTTTTGAACTTGAGACCCCCAAAATGGAAGTCCCGCCCAAACCATTTGGCCATCCCGAAGGGTATAATTTTTCAAACTTCAATGTCAATAATTAGAGTTAAACTCATGATTATCCAAGATAAATGTCAAGTTGTCATCATTTGGATTATCTTTATGACTTTTATTTTTTTTGACCTTTTAAGTCAATTAAATAAAAGAAGAATGTCACTATGTGGAGATTTTATGCAACATATAATTAATGATGATATTACTTTTTTAAATTTATTTAAGTTTTTTGACCTTTTCAATGGCTTAACAGGAAGTCCTATTTACTTTCATCATCTTTTTTTTGGGTTATATTTCCCTTTATTATTAGATGTTTGTTTTTGGTCAAGTCATATTAGAATAAATTTATTAATTCAAAGTCTATACAACTATAAAGATTAAAATGTCAGGAATAGATATATGTTTCATATTGAATTTAATGATAATCACCATCAATATTTTAAATGGCGGACTTATAATTTATATATTTATTTGCTGGGATATGAATGAGCATCTTTTTCCACTTTTTGTTAAAAAAATTAGTTTAAGGAGTTGCCTATTTAGAAGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTAGACTTCAAAAAGTGTTTTGGCAAATATAAAAAATAACTTACAATTAGTCAAAAATGACTTAAAATAAATAAAGAAGTGTTTGACAAGGTTAAAAATGACTTAAATAAGTTAAAAATGACTTTAAATAAGTCAAAAATCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTCGACTTAAAAATCATTTTATTTCAACTTTTTATTTTTGACTTAAAAACTACTTTTTTTTTATGCCAATCCAAAAGGCTCTTAGGCAATTCTATATTTCGGTACGGTCTTACCCTATAGGGTGATTTTGTTTTTGGTAAAAGAAAGAGAAATAATGTCTTTCTTTTACTCTTTAAAAAACATATTTTTTTTGTTGGACAAGTTTATCATTCAATTATTTTCTAATATTTAATAATTTAAAATCAACATTAAATCTTTACTAACTTAAACCATTTTAGATTTATTTTATTTCTTCTAACGAATATCAATTTGAACAGGAATCAATTATGATTTTTACGCCAACAAGGGTTGTGGTGAAACCAAGACCTCTAGGGTATGGAGTCGTCTTTGTTAGTGCTGTTAGGGAGCACTGTATCCCCAATGTGGGACTTTCGGGCACAAATCGGAGTTTAGTTGGGCTCCAATGTAGGGCACCAAATGGGAAACCAAAATAAATACATATGATTTTTACATATTAATATTAAATGCAAGATGCATAAAAGTTATATGCATTAATCATTCTCAAAAAATAAAAGTTATATGCATTAAATAGGATTTTGACCAATTATAGTTTTGTCCCAAATTAAAAGTCTACATATATTTTAAATGTATATCATCAATAGAATTGATGTCAGACACAAACAAATCATTTATTTAAATGCTCAATTCAAACTACAAACATCACCAAGGAAAAATTCCAAATATTTCTAAATTGTAACCATTTAGGACTAACTTTTTACTATAAGTATATAGGTATGGAGATCTGTTTGTGGATATTCGGTTGAGAATGTTTATTGATATCTTTAAAAGGAAAGAACAAAACTTGTATCAAGTTGGGCGGGCTGGGCTGTGGCGAGGGGCGAATGTAGGCCCAAATTATGTTGCGCGTGAACGCATGGTCTCTCTGCAAATTAGATATTTTTTGTACATATTCTTGAATTGATCTAATATTCTCTGATGACTCTCATACTCCAAAAAACTTGAATGGTGTATTTGGTTCAATGTTGAGTTTTGTACCCCAAGGTCTAGGGATCAATTCCTACTTACTACTCTCTTTTTTCTCTTTTTCTTTTAAAGTTGTGCACCCATGTTCTAGAAATCATAGATCCGCTCTGGCTATGACCCGTCATTTAGCTCATCTTGACCCAACTCATTTTAGCCAAGTAGGCTATGGGCATGGTTGAGCAAATGACCCATTTGTGGATTCAACCCATCTTAGCCCAAACAACCGATTTGCCACCCCTTAGGCATACTTTCTGGAAATGTTTGGTGTGTAAAGTTATTCCCATGGTTAAAGCGGCATATAAAATGGATTTGGTTACAACCTTGGGCTGTAAACTATGTATTGAGTCTTTTTTCCCTTTAAAAAGTGCTTTTTATGCTCAATTGGTTTTTTTTTTTGATAACCATTAAATTCTTTCTCTCTCTCTGTAGGTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAGGTATATTTTAGTTTACTTGAAATCCAGCATGTTAATGTTGATCCTTCTATCAATTTTATCCTATATTGATTTAGCTGCCCCGTGGCTTGAAATTGTGTGTTCCCAAATCTGCGACCTGATTGTAGTCCGACCCCGTTTCATGTTGGCGTTCAATTTTATTTGGTGGATAAAGGACTACAACTTTTGGCCCCATATCCAAACTTTCATTATTGCATACATAATAAGTCGGATGTTGTGTGGGTAGCTCCACTTTTCGTTGATGAGACTTGAGTATGTTACTGATTTATCCCATTTTACTATGCTGGTCAACTCTTTGTTTTCCAGTTCTGCCCTTCCAAATGTATCATGTCCAGGAAAAAAACAAAGATTGTTTAGATCTGCTGGGACCCAATCTCACCCTTTTTGTTGTTTTGGGTAAGTGGACATGATGTGAAATGTCAAATGGAAAAGGAAAAATGAAAACGATTCTCCATTGGAATGAATTTATGCTCCCTGTCTGTTCCCCAAAAAAGGGAGAGATTAGTTGATACATTTATTGAATCCATTGGGGTTGATCGCAGACAATTGCTTAACTTTATATCAATTTGTCTTTAGGGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGG</genome_strand>
        <mrna_strand>AATTTTCATATTTTGTTGTTGAATTTCTTCAATCTGCTTCTTGGGGTTTAGCTTCTGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAG........................................................................................ATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGAATCGCCTGCACCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361870" ref_strand="+" ref_description="SGN-E361870 [cLPP-12-F20]">
      <seq>actctcagaaattacgtcaaattaccatcttatccttcttcttcttcctctcaattctctctgtttttctttttttttttcagaaaaaaatttccacaaaaacaaatccaaaagagcttggatccgacccgtttggacccatttgctctttctagtttcttctcctttctctctctctgtttcttgaaatttttttcattttttttttcacagagagggagacctacattcatttattattattgttaatggtgttttcttcattcaaaaaacaaaaaggtatacataatttcgtgagttccaatccaaatttacatctttgcatggtgtgcatcaccaattagcagacagatttgtgagctgagtagtaataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="114685" stop="117267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114985" g_stop="115268" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115269" i_stop="116870" i_length="1602">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116871" g_stop="116967" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E361870" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114985" e_stop="115268"/>
          <exon e_start="116871" e_stop="116967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGAAATTACGTCAAATTACCATCTTATCCTTCTTCTTCTTCTTCCTCTCAATTCTCTCTGTTTTTC-TTTTTTTTTTCAGAAAAAAATTTCCACAGAAACAAATCCAAAAGAGCTTGGATCCGACCCGTTTGGACCCATTTGCTCTTTCTAGTTTCTTCTCCTTTCTCTCTCTCTGTTTCTTGAAATTTTTTTCA-TTTTTTTTTCACAGAGAGGGAGACCTACATTCATTTATTATTATTATTGTTAATGGTGTTCTCTTCATTCAAAAAAACAAAAAGGTATGAACTTTTTCATGTATATATATTGATGGTGGGTATCTACCAGAATTTACAACTGATGTCCCATTTTTTGTGTTGCGGGGTATGACTTGTTTGAGATCGAGACGTAGTTGGTGCTTTGTTATTAATTATTTACCTTAAAGTTGGGGGTTGGAATTAATTTTTTTTGAAATTTTGGTAACATATTCATCCCATGTATTTCTTAATTCTTGACCTATTGATTAGTAGCTTGTTGTATTGTGATTTTTTTTTTTGCTGTTTTCGTTCTTGATATTTTATAGCTGCATTTGAGTTTGAGAGTTTTTTTGAAAAACAACTTTTTCTGTATCACAAAATATTAATAAAGATTTGCGTACATTTTATACTTCTCGAGATGTATTGTTGTTGTTCTCATCATCATTCTTTATATTTTGTCTTTTTCCGCTTTTTAAAGCAATTGCTTTGTTAATTTTTTTTTCTTTTTTTTTCTTTTTATAGTTTCTAACAACTTTGGTGTTGTTATTCTTTTGTTTGTTTGTTTTGTGTTATGATGTTAATGTGGACCTATTTTTTGCTTCATTCTCTCTTATGCATAATCTGACAATTGTTTTGTCTGATTCAGTCTCTGAAAGTGAATACAAGGTCATCTTCAATTCCATCCTTTTTCATCATTAACAATTTTAATATACAGGACAAGGAAAATATAAAAATAAAAAATGAGAGAAAAAGCAGTTTATTACATTTATATCGAACACCTTTTTAGTTATGTCTCTAAATTATCTACTTTTTCTTATGTGTAGCACATGAAATTATTATAGTTTGTTTCATTAGTTTCTTTGCATTTAGCCATCTTTGTGTTCTTTTTTGCTTCTTTTTTTTGGTCAGTAATATTCTTGTATTACATCTGTTTTTTGAGGTTCACTGCTTTTAAAAGCCTGTTAAAAACAGCTTTTGTCTCATTTTTTTGAGTTTTATTCTAAAGCATATATAAGATTTTGAAAACTGCTAAATCAAGATTCATTTGTAGATTTTACTATTAGTTTCAGATGTTAAGTACTTCTTTAAGGTAAGCCTTTTGTACTCCAGTAATCGCAAATGCAGATAATGTATTGAATCAAATTTCAAACTCATTTACTAGTCATATCTTTGTAGTTCATGTGATTGTGACTTTAAGCCCCAATTGCATCATAGGAATTCGAAAAAAAGGGTTCTTTCGTATACTTATAGTAACTATTGTCACTTCTTTTTTGATTTTGATAGTTTCTGCGGTTCCAATTTCTGGGAGCATTATGTTGAGTCACTCCAAGAGTAGAATCAGCAGCTCACCTCACGTTTTAGGAACCGAGGAATCACACGTAGACGGACCTGAGCATTCTCCTGCTCTACGGTCTTGACGTAGACGCTGTTATGTTTTCTGTATTGTCGTTTTTCCTTTCAATTATTACTTTGATTTGCTTCTTCACTTGAGACGAGGGTCTTTCAAAAACAGTTTCTCTACCTCCATAGGAAAAGGTCTGCATACGCTACACCCTCCCAGACCCTACTTTGTGAGATTTCACTGAATATGTTATTATAAGGAATTGTATATTCAGAGATTTCAAGTTTCTCTTGTTCATGTTCCAGGTATACATAATTTCGTGAG-TCCAATCGAAATTTACATCTTTGCATGGTGTTCATCAGCAATTAGCAGACAGATTTGTGAGCTGAGTAGTAATAATGG</genome_strand>
        <mrna_strand>ACTCTCAGAAATTACGTCAAATTACCATCTTAT-C--CTTCTTCTTCTTCCTCTCAATTCTCTCTGTTTTTCTTTTTTTTTTTCAGAAAAAAATTTCCACAAAAACAAATCCAAAAGAGCTTGGATCCGACCCGTTTGGACCCATTTGCTCTTTCTAGTTTCTTCTCCTTTCTCTCTCTCTGTTTCTTGAAATTTTTTTCATTTTTTTTTTCACAGAGAGGGAGACCTACATTCA--T-TTATTATTATTGTTAATGGTGTTTTCTTCATTC-AAAAAACAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATAATTTCGTGAGTTCCAATCCAAATTTACATCTTTGCATGGTGTGCATCACCAATTAGCAGACAGATTTGTGAGCTGAGTAGTAATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363796" ref_strand="+" ref_description="SGN-E363796 [cLPP-3-J13]">
      <seq>agaaattacgtcaaattaccatcttatccttcttcttcttcctctcaattctctctgtttttctttttttttttcagaaaaaaatttccacaaaaacaaatccaaaagagcttggatcccacccgtttggacccatttgctctttctagtttcttctcctttctctctctctgtttcttgaaatttttttcattttttttttcccagagagggagacctaccttcatttattattattgttaatggtgttttcttcattcaaaaaacaaaaaggtatacataatttcgtgagttccaatcgaaatttacatctttgcatggtgtgcatcagcaattagcagacagatttgtgagctgagtagtaataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="114716" stop="117267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114991" g_stop="115268" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115269" i_stop="116870" i_length="1602">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116871" g_stop="116967" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="371" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E363796" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114991" e_stop="115268"/>
          <exon e_start="116871" e_stop="116967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTACGTCAAATTACCATCTTATCCTTCTTCTTCTTCTTCCTCTCAATTCTCTCTGTTTTTC-TTTTTTTTTTCAGAAAAAAATTTCCACAGAAACAAATCCAAAAGAGCTTGGATCCGACCCGTTTGGACCCATTTGCTCTTTCTAGTTTCTTCTCCTTTCTCTCTCTCTGTTTCTTGAAATTTTTTTCA-TTTTTTTTTCACAGAGAGGGAGACCTACATTCATTTATTATTATTATTGTTAATGGTGTTCTCTTCATTCAAAAAAACAAAAAGGTATGAACTTTTTCATGTATATATATTGATGGTGGGTATCTACCAGAATTTACAACTGATGTCCCATTTTTTGTGTTGCGGGGTATGACTTGTTTGAGATCGAGACGTAGTTGGTGCTTTGTTATTAATTATTTACCTTAAAGTTGGGGGTTGGAATTAATTTTTTTTGAAATTTTGGTAACATATTCATCCCATGTATTTCTTAATTCTTGACCTATTGATTAGTAGCTTGTTGTATTGTGATTTTTTTTTTTGCTGTTTTCGTTCTTGATATTTTATAGCTGCATTTGAGTTTGAGAGTTTTTTTGAAAAACAACTTTTTCTGTATCACAAAATATTAATAAAGATTTGCGTACATTTTATACTTCTCGAGATGTATTGTTGTTGTTCTCATCATCATTCTTTATATTTTGTCTTTTTCCGCTTTTTAAAGCAATTGCTTTGTTAATTTTTTTTTCTTTTTTTTTCTTTTTATAGTTTCTAACAACTTTGGTGTTGTTATTCTTTTGTTTGTTTGTTTTGTGTTATGATGTTAATGTGGACCTATTTTTTGCTTCATTCTCTCTTATGCATAATCTGACAATTGTTTTGTCTGATTCAGTCTCTGAAAGTGAATACAAGGTCATCTTCAATTCCATCCTTTTTCATCATTAACAATTTTAATATACAGGACAAGGAAAATATAAAAATAAAAAATGAGAGAAAAAGCAGTTTATTACATTTATATCGAACACCTTTTTAGTTATGTCTCTAAATTATCTACTTTTTCTTATGTGTAGCACATGAAATTATTATAGTTTGTTTCATTAGTTTCTTTGCATTTAGCCATCTTTGTGTTCTTTTTTGCTTCTTTTTTTTGGTCAGTAATATTCTTGTATTACATCTGTTTTTTGAGGTTCACTGCTTTTAAAAGCCTGTTAAAAACAGCTTTTGTCTCATTTTTTTGAGTTTTATTCTAAAGCATATATAAGATTTTGAAAACTGCTAAATCAAGATTCATTTGTAGATTTTACTATTAGTTTCAGATGTTAAGTACTTCTTTAAGGTAAGCCTTTTGTACTCCAGTAATCGCAAATGCAGATAATGTATTGAATCAAATTTCAAACTCATTTACTAGTCATATCTTTGTAGTTCATGTGATTGTGACTTTAAGCCCCAATTGCATCATAGGAATTCGAAAAAAAGGGTTCTTTCGTATACTTATAGTAACTATTGTCACTTCTTTTTTGATTTTGATAGTTTCTGCGGTTCCAATTTCTGGGAGCATTATGTTGAGTCACTCCAAGAGTAGAATCAGCAGCTCACCTCACGTTTTAGGAACCGAGGAATCACACGTAGACGGACCTGAGCATTCTCCTGCTCTACGGTCTTGACGTAGACGCTGTTATGTTTTCTGTATTGTCGTTTTTCCTTTCAATTATTACTTTGATTTGCTTCTTCACTTGAGACGAGGGTCTTTCAAAAACAGTTTCTCTACCTCCATAGGAAAAGGTCTGCATACGCTACACCCTCCCAGACCCTACTTTGTGAGATTTCACTGAATATGTTATTATAAGGAATTGTATATTCAGAGATTTCAAGTTTCTCTTGTTCATGTTCCAGGTATACATAATTTCGTGAG-TCCAATCGAAATTTACATCTTTGCATGGTGTTCATCAGCAATTAGCAGACAGATTTGTGAGCTGAGTAGTAATAATGG</genome_strand>
        <mrna_strand>AGAAATTACGTCAAATTACCATCTTAT-C--CTTCTTCTTCTTCCTCTCAATTCTCTCTGTTTTTCTTTTTTTTTTTCAGAAAAAAATTTCCACAAAAACAAATCCAAAAGAGCTTGGATCCCACCCGTTTGGACCCATTTGCTCTTTCTAGTTTCTTCTCCTTTCTCTCTCTCTGTTTCTTGAAATTTTTTTCATTTTTTTTTTCCCAGAGAGGGAGACCTACCTTCA--T-TTATTATTATTGTTAATGGTGTTTTCTTCATTC-AAAAAACAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATAATTTCGTGAGTTCCAATCGAAATTTACATCTTTGCATGGTGTGCATCAGCAATTAGCAGACAGATTTGTGAGCTGAGTAGTAATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720116" ref_strand="+" ref_description="SGN-E720116 [FC09DD12]">
      <seq>gggcgattggcggccaatcggccgaattagcgatgagtatacaacctttttccggttcgtgaatggtgtgggcccatttcgtgccgattgtgacggccggaggcggaggaagatcgtcgacggtgtcgggattgacgacggaggagcgatcttctgaccgggaagctcgttcgccggcgactaagcgtgctcgaaatgatcgccagtctgtttcagtgaaaggcctttcttcatcttgaggtgaaggtgatggcaatggtgaacttgcctggcaacctacaagtatcaaaattttcttaatatatgtttatctgatcatcttttatagcttaatttgaaaattacctgaaaatctgtttcattttacagtatgtgccaaaatttatgtgattcaaaatgtttcatatataagcatttaaattcgtaataattatggatttgtgattagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="122677" stop="9452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122374" g_stop="121955" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="450" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121954" i_stop="117466" i_length="4489">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117465" g_stop="117431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="485" r_length="35" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117430" i_stop="115736" i_length="1695">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115735" g_stop="115709" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="512" r_length="27" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E720116" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122374" e_stop="121955"/>
          <exon e_start="117465" e_stop="117431"/>
          <exon e_start="115735" e_stop="115709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAGTATACAACCTTTTTCCGGTTCGTGAATGGTGTGGGCCCATTTCGAGCCGATTGTGACGGCCGGAGGCGGAGGAAGATCGTCGACGGTGTCGGGATTGACGACGGAGGAGCGATCTTCTGACCGGGAAGCTCGTTCGCCGGCGACTAAGCGTGCTCGAAATGATCGCCAGTCTGTTTCAGTGAAAGGCCTTTCTTCATCTTGAGGTGAAGGTGATGGCAATGGTGAACTTGCCTGGCAACCTACAAGTATCAAAATTTTCTTAATATATGTTTATCTGATCATCTTTTATAGCTTAATTTGAAAATTACCTGAAAATCTGTTTCATTTTACAGTATGTGCCAAAATTTATGTGATTCAAAATGTTTCATATATAAGCATTTAAATTCGTAATAATTATGGATTTGTGATTAGTAGTTCTTTTACTTAAATACGTAAATTCTATTATTTTAAGAACTTGAACATTTTAGGATCAAGTTCTTAATGAAAATTAGATGGTTTGACTCTCGTACTTTGAATCGTGTTGATAGATACCATTGGCGGAGATAGATAGGACCGAGGGGTTCGATTGAAACTCCTTGATAGGAAACTACACTAACTATATTAGATGTTGAAACACTTTAGCTTTTCGGGTGTGTGGTTTATATTTTGATACGCTTAATGAAAATCCTCACTCCGCTTTTACATTAGTGATCATGAGATTAATAGTTGCTCACACTCTTAAAAATGTCAATGGATGTGTGTTGGATTCTCCAAAAGTAGCATATTTTGGAAAATCTGATACGATGCGGCATCAAAAGTGAAGATTCGGTGCAACTAACTTAACTTAGGAGGTAATTGAGATTTGATCCTGATCACTACTGGACTGACTCATACGAGCCTCCGACGAAAATACCTTTGAGAAACAAAAGTAAGGAAACAAGAAACAGGGCACTTACATGTCACTGAAAAAGGATTGCCAACTTTTTTTGGCTGATGAAATTGACTAACAAATGACCTCCTCCTTGTAGAATAAGAAACTCTTGATCCTAACAAAGGGAAGAGTTTCTCTGAGAGGGGCTTTGAAGTGACAAAGCAAGCTTCCATATTGAATAGAGAATGTCTTGCCTTAATTAGCCAAATAGTACTGCAATTGCAGATTTAGAGAGATTCTTGCTATAAAAAGAAATTGATCAGTGTGTATATATTGGTTAAGTGGATATAGCAAAAAGGTATTGATGTATAAAGAGAGAATTCATTGTGTTATATATGGAGAATGTGGTTACATGTAGACCACATGAAGTTTTTGAGCTAATCCAGTACAAGAGGATACCTTTTCACTGTTGGCAGAGTTAAATTCCTAGAAGTATGGGCCAATGGATATGGCTTTACACATAAGCAGACAGGCCAAAAGTTATCAAGAAATTGTTTGGTTCTTATAAGTTAGAATTGGCTAAGGTTTAATCTGAAGAAATCTAGTGCACTTTTATGAGTGATGTGTTGTGATTCTAGCCACAGACTGCCAGTATGACTTCTTGTTTCCTTAGCCTTCTTTCTTTTGTCATTTCATTCTATCTTTCTTGATTTGGTATTAAAGTTTTAACTATCCATAATACTCCTTTCATTTCGATTTTATTCTTCTTTTTAGTCCGTTTTTAAATAAGAATATATCTAAAAAGAAATTATATAAGTTTCATTTGGTGATTCAAGTAGTTCCACTCGAAGGAAAAAGCTGAATTTACAAGTTCCCCACTAAAAAAGGGAATACCAAATTAAATGTTATTATTTGGTTCAAGTGCTACCATTACATGGAAGCTCAAAAGCTTCTCCAATATAAACCATTACAACCTAAAAGATCAAAATTACAAGCATAATGCTCTAATTCAGAAATAATCTCATAAATACAAATAAGATATCCTTCTCCACCAAACATTTTGATTCTTTATCACATCAAAGTGTGGCGGAATAGTTGAGATTCCTTTCACCTCTAACTAGAAGTGTCAAGCTAGCACTTCAGGAATGGAAAACTTTTTGAGTTACGAGCGGTTTACTCCCCTTGCGTCTTATCCAACGCAAATGGTTGAAGCAGATCAAGTATGCTAAGTCAGTTGGTTCGGAGTACCACGAGCGTCCACTATAACTTAGTGAGTTAGTAACAATTGGTGCAAATATAATACTAAATGTGAGGTGTTGTTTTTCTTAACAACAAATGAGCTATATACAGAGCTCAAGATACGCTAACATCTACTCCCCTATGTAACATGTCGCTGTAGGTTTTAGATGTATTATTCTGAACAAGAATCTTCCTCAACTCTCACAAGGGTGGGTATTTGGCCATGATCAACAAAATCAATCTTGTTCAATCTAACACAACCAAGCACTTTCTCTGGCAGCTCCTCTGGCTTCTGTGCCTGTAGAATTTAGTGATTACACAATGAACATACACCATTAATAAAGCCTGAAGAAATTAAGCCGACCATCCTCAAAACTACTAGCATCGTATGTGTTTTCTGAAAAGAAATGACAAACCTGAATTGTTAGACCAAAATCAAGTATTCCATGTCGTAAACGTTCTCTAAAAGCATCGAGCCCCTTTCTTGCTATGTAGCTGAAGCGATGAATGTCAAGATCAACTTCTAGGTAATTCGGGCCCTATAATAAGCAGAGACCATGCACATTGAGAATTTTGTGGTGTTAAAAAAGAACCACACTGTTGATAAACTGACAAACAAACTAAAGTCAGGGTATCAAAGATCCACCTGATAAAAATTGTGTTGAGGGCGGGAAAGCACAGGCTTTTCATTGTAAGCATTCAAAAGCTTCCTTTCAGTTGAACTTGTAACAATCTCATCTGGATTAACCAACCCAACCATAATCTTCAACCTCTCTCTGAAAGGAACAGTTGATTCTTTTGCAAAACCTTTCACCTTTTCCATGTCATCCTCGATGAATCTCTATCATTTAAACGAGTAGCACGTATAAAGGAAACATAAATCGGGAAGCAAGGCAGATCAGAATAACCATATCAGCAAAGGACTCTATCGCCAGCTATGAAGGAAGTAATTGTCAATCATTTAAATTGCAAGATGGTGAAGTTAACGACCTCCCTAGCCTAACCTTTCAGCTAACCACTGTCCAAAATGGAACACAGAACTAGCATACTCTACTTTCTGCCTCTCCCCTCGTTAATACCTTCCTTAAATTACAAGTAAAGAGGAAGGGAAAAATGAAAAACGAAAGGAGTAGAAAATCCGTTGATTTTGCTTCATAAAGTTGACATAAGTACCTTGATGGTGTCCTGAAACTGGGGAGAGATGTCCTCCTCAAAAGTTTCAGTAAGTTTGAAATATACTACAAGGCTCAAGCCTTCTCCATCAGCATCACCAACGAACATCGGAGCAGGATAAGTTGGCAGCTGTCAAAGAAGAACCATATCGGTTAGAATAGAATGTTATGTCAAATAAAATCTACTTCGTTTAGTTGGGAGAGACTGCTCTAATACCTGAATGTTAATAATTAGTAAAGGTGGTATTCTTCCATCTCCTTTTATAGAAGGAAGCTCAATGTGTTGTGCTATATGATTGATCTTTCTTGGGCAAACAAATAAGTCTACCCCAATTGGAGTATAAGGTGACACATTTGTAGCAGGGGCTTTCCTCTTATCTCTGCAGATTAAACGGAAAAATTGTAAAGAAACAGGTTTAAAATCCATTATAGAAGTCCTACAACTGTAATTGATTGGTAAAAAAAATGAAGGTTGAGAGCGTACTTGAAATAACTATCACCACGGAGCTTAAAGTTTGAAGGCTCGATCTTTGACCAACTTCCTGCGATAGACTTTTCTTCTGTGCAACAGGGAATTAAAAGCCCAGCCCTGGGGCGGCGAAGAAACTTTCTTGAAGAACCTACAAGAATACCACTATGTTAATGTATTATTAACTAATCATCACCGTAGCTTTTCAACCTTCCATCTCTAGACCGGGAAAAATCTAAACTTGAAGGTGCATCATGATCTCAGCAAGATTTTGCTAGTAGTTAGATTCGAAAATAATGAGAATAAAAATGTGATTCTCTTATTGGACTCCATTTATGCTGAAAATGAAGTATAGAAATGAGGCGAGGTACTCACAAAATTCATTTTCTTCCCCATCAACAGATGTCCTCTTCATAGAAAGCCTTATAATAGTCGACTTCTTTACTTGAGAATGTGGAGCTGAGTTTTGTCCATTTATGATTTTGTCATTGAAACTCAAGGTATTTACCAGCTTCGGTAAAACAGACTTGAAAACAGTTTCCTGAGTTTTCTCCTGCATCTGAAGTATCTCCTTTTTAACATTTTTAAAACTTGCATACGCACGATCCAAGTTCTTCTTCTTTTTTGTGCCAAAATCTTCACCCTTCCCCATGGATGGACGTTCATACTCCTGAGCAGTTACAACTGCAGTTCCACTTGGATCCTGAACTCCATCTTTGCTCAAGCCATCTATCTTGAGATATTTCTCATGATATTCTTTGTACTTATGTTTGCTATCCATAAAGCATGATGAAGTTTCATACTGAACTACTTGTCCATTTGAAATGTTGGGGAAACTATCTAGAAGGAATAGAATGAAAATATCATAACTTTGTTCAAGAATGATGGCCTTCTTAATCCATAGATAGACAAAGTCATCAATTGTAAGCACAACAACAAAGAAACTGATGATCATTACCTCCATGAACACTACTAAAGTCATCATCTGAGTCGGATTCAAAAATGCTGTGCGAGTCGAACCATGCTTCTTCTTGGCAAACAACTGTAAAAATGTAAATCTCTTAAACTTTTCAAGCTTACAGTTCAAAAAAATTTCATTATCGATAGCCTAAGCACACAAAACTCCGTTTGCTAAGATGTTAGAATGCATATTTGTTCCTTCTTGTGAACAGAAAAGGCACCAGAACTAACATAACCACAATAAAAGGTATAGAAAGCGTCATGATACAAAACATGTAGCAGGATTATTATATCTTTATTCTTTAAACCTATGCTGCTCGGACTCTCCAAAAGAGTTGTCAAACCTGTGTCAAATTCTCCAAAAATACACTTTTGAAGAGTCCATTAAGCATTGAGCATAGGCATATGATAATATAAGGTTCAAAATAGAAAAAAAAAAGAGAAGAGTTTACCGTTGCCATCTATTTGATTATGCTGCCACTGCAATTGAGTAAGATGAAATGTGGAGTTGGAGACCTCAGATGTTCTGCAAGTTGTTGTAGTTGTATGAACAAACTCACTAACAGCAATGTCTGTCACCCGCGCATCGCTGTTTCTTTTCCTGGTTCCTATTATACCTGAGTTTGAATTCTTTCTATGGTATTTTCTGTGGCGACGATGGTGTTTCTTCCTTGCCCTGATTGTGGTTGCTGGAGTTGATACGCAACCACCCATTATTACTACTCAGCTCACAAATCTGTCTGCTAATTGCTGATGAACACCATGCAAAGATGTAAATTTCGATTGGACTCACGAAATTATGTATACCTGGAACATGAACAAGAGAAACTTGAAATCTCTGAATATACAATTCCTTATAATAACATATTCAGTGAAATCTCACAAAGTAGGGTCTGGGAGGGTGTAGCGTATGCAGACCTTTTCCTATGGAGGTAGAGAAACTGTTTTTGAAAGACCCTCGTCTCAAGTGAAGAAGCAAATCAAAGTAATAATTGAAAGGAAAAACGACAATACAGAAAACATAACAGCGTCTACGTCAAGACCGTAGAGCAGGAGAATGCTCAGGTCCGTCTACGTGTGATTCCTCGGTTCCTAAAACGTGAGGTGAGCTGCTGATTCTACTCTTGGAGTGACTCAACATAATGCTCCCAGAAATTGGAACCGCAGAAACTATCAAAATCAAAAAAGAAGTGACAATAGTTACTATAAGTATACGAAAGAACCCTTTTTTTCGAATTCCTATGATGCAATTGGGGCTTAAAGTCACAATCACATGAACTACAAAGATATGACTAGTAAATGAGTTTGAAATTTGATTCAATACATTATCTGCATTTGCGATTACTGGAGTACAAAAGGCTTACCTTAAAGAAGTACTTAACATCTGAAACTAATAGTAAAATCTACAAATGAATCTTGATTTAGCAGTTTTCAAAATCTTATATATGCTTTAGAATAAAACTCAAAAAAATGAGACAAAAGCTGTTTTTAACAGGCTTTTAAAAGCAGTGAACCTCAAAAAACAGATGTAATACAAGAATATTACTGACCAAAAAAAAGAAGCAAAAAAGAACACAAAGATGGCTAAATGCAAAGAAACTAATGAAACAAACTATAATAATTTCATGTGCTACACATAAGAAAAAGTAGATAATTTAGAGACATAACTAAAAAGGTGTTCGATATAAATGTAATAAACTGCTTTTTCTCTCATTTTTTATTTTTATATTTTCCTTGTCCTGTATATTAAAATTGTTAATGATGAAAAAGGATGGAATTGAAGATGACCTTGTATTCACTTTCAGAGACTGAATCAGACAAAACAATTGTCAGATTATGCATAAGAGAGAATGAAGCAAAAAATAGGTCCACATTAACATCATAACACAAAACAAACAAACAAAAGAATAACAACACCAAAGTTGTTAGAAACTATAAAAAGAAAAAAAAAGAAAAAAAAATTAACAAA</genome_strand>
        <mrna_strand>CGATGAGTATACAACCTTTTTCCGGTTCGTGAATGGTGTGGGCCCATTTCGTGCCGATTGTGACGGCCGGAGGCGGAGGAAGATCGTCGACGGTGTCGGGATTGACGACGGAGGAGCGATCTTCTGACCGGGAAGCTCGTTCGCCGGCGACTAAGCGTGCTCGAAATGATCGCCAGTCTGTTTCAGTGAAAGGCCTTTCTTCATCTTGAGGTGAAGGTGATGGCAATGGTGAACTTGCCTGGCAACCTACAAGTATCAAAATTTTCTTAATATATGTTTATCTGATCATCTTTTATAGCTTAATTTGAAAATTACCTGAAAATCTGTTTCATTTTACAGTATGTGCCAAAATTTATGTGATTCAAAATGTTTCATATATAAGCATTTAAATTCGTAATAATTATGGATTTGTGATTAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329828" ref_strand="+" ref_description="SGN-E329828 [cTOD-3-H3]">
      <seq>tttaagctccgtggtgatagttatttcaaagataagaggaaagcccctgctacaaatgtgtcaccttatactccaattggggtagacttatttgtttgcccaagaaagatcaatcatatagcacaacacattgagcttccttctataaaaggagatggaagaataccacctttactaattattaacattcagctgccaacttatcctgctccgatgttcgttggtgatgctgatggagaaggcttgagccttgtagtatatttcaaacttactgaaacttttgaggaggacatctctccccagtttcaggacaccatcaagagattcatcgaggatgacatggaaaaggtgaaaggttttgcaaaagaatcaactgttcctttcagagagaggttgaagattatggttgggttggttaatccagatgagattgttacaagttcaactgaaaggaagcttttgaatgcttacaatgacaagcctgtgctttcccgccctcaacacaatttttatcagggcccgaattacctagaagttgatcttgacattcatcgcttcagctacatagcaagaaaggggctcgatgcttttagaaaacgtttacgacatggaatacttgattttggtctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="118294" stop="120155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118594" g_stop="118622" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118623" i_stop="118726" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118727" g_stop="118889" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="192" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118890" i_stop="118976" i_length="87">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118977" g_stop="119105" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119106" i_stop="119437" i_length="332">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119438" g_stop="119632" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="516" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119633" i_stop="119739" i_length="107">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119740" g_stop="119855" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="632" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E329828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118594" e_stop="118622"/>
          <exon e_start="118727" e_stop="118889"/>
          <exon e_start="118977" e_stop="119105"/>
          <exon e_start="119438" e_stop="119632"/>
          <exon e_start="119740" e_stop="119855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGCTCCGTGGTGATAGTTATTTCAAGTACGCTCTCAACCTTCATTTTTTTTACCAATCAATTACAGTTGTAGGACTTCTATAATGGATTTTAAACCTGTTTCTTTACAATTTTTCCGTTTAATCTGCAGAGATAAGAGGAAAGCCCCTGCTACAAATGTGTCACCTTATACTCCAATTGGGGTAGACTTATTTGTTTGCCCAAGAAAGATCAATCATATAGCACAACACATTGAGCTTCCTTCTATAAAAGGAGATGGAAGAATACCACCTTTACTAATTATTAACATTCAGGTATTAGAGCAGTCTCTCCCAACTAAACGAAGTAGATTTTATTTGACATAACATTCTATTCTAACCGATATGGTTCTTCTTTGACAGCTGCCAACTTATCCTGCTCCGATGTTCGTTGGTGATGCTGATGGAGAAGGCTTGAGCCTTGTAGTATATTTCAAACTTACTGAAACTTTTGAGGAGGACATCTCTCCCCAGTTTCAGGACACCATCAAGGTACTTATGTCAACTTTATGAAGCAAAATCAACGGATTTTCTACTCCTTTCGTTTTTCATTTTTCCCTTCCTCTTTACTTGTAATTTAAGGAAGGTATTAACGAGGGGAGAGGCAGAAAGTAGAGTATGCTAGTTCTGTGTTCCATTTTGGACAGTGGTTAGCTGAAAGGTTAGGCTAGGGAGGTCGTTAACTTCACCATCTTGCAATTTAAATGATTGACAATTACTTCCTTCATAGCTGGCGATAGAGTCCTTTGCTGATATGGTTATTCTGATCTGCCTTGCTTCCCGATTTATGTTTCCTTTATACGTGCTACTCGTTTAAATGATAGAGATTCATCGAGGATGACATGGAAAAGGTGAAAGGTTTTGCAAAAGAATCAACTGTTCCTTTCAGAGAGAGGTTGAAGATTATGGTTGGGTTGGTTAATCCAGATGAGATTGTTACAAGTTCAACTGAAAGGAAGCTTTTGAATGCTTACAATGAAAAGCCTGTGCTTTCCCGCCCTCAACACAATTTTTATCAGGTGGATCTTTGATACCCTGACTTTAGTTTGTTTGTCAGTTTATCAACAGTGTGGTTCTTTTTTAACACCACAAAATTCTCAATGTGCATGGTCTCTGCTTATTATAGGGCCCGAATTACCTAGAAGTTGATCTTGACATTCATCGCTTCAGCTACATAGCAAGAAAGGGGCTCGATGCTTTTAGAGAACGTTTACGACATGGAATACTTGATTTTGGTCTAAC</genome_strand>
        <mrna_strand>TTTAAGCTCCGTGGTGATAGTTATTTCAA........................................................................................................AGATAAGAGGAAAGCCCCTGCTACAAATGTGTCACCTTATACTCCAATTGGGGTAGACTTATTTGTTTGCCCAAGAAAGATCAATCATATAGCACAACACATTGAGCTTCCTTCTATAAAAGGAGATGGAAGAATACCACCTTTACTAATTATTAACATTCAG.......................................................................................CTGCCAACTTATCCTGCTCCGATGTTCGTTGGTGATGCTGATGGAGAAGGCTTGAGCCTTGTAGTATATTTCAAACTTACTGAAACTTTTGAGGAGGACATCTCTCCCCAGTTTCAGGACACCATCAAG............................................................................................................................................................................................................................................................................................................................................AGATTCATCGAGGATGACATGGAAAAGGTGAAAGGTTTTGCAAAAGAATCAACTGTTCCTTTCAGAGAGAGGTTGAAGATTATGGTTGGGTTGGTTAATCCAGATGAGATTGTTACAAGTTCAACTGAAAGGAAGCTTTTGAATGCTTACAATGACAAGCCTGTGCTTTCCCGCCCTCAACACAATTTTTATCAG...........................................................................................................GGCCCGAATTACCTAGAAGTTGATCTTGACATTCATCGCTTCAGCTACATAGCAAGAAAGGGGCTCGATGCTTTTAGAAAACGTTTACGACATGGAATACTTGATTTTGGTCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728262" ref_strand="+" ref_description="SGN-E728262 [LA17BA04]">
      <seq>tccacttatccaatatatacacactgatcaatttctttttatagcaagaatctctctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggcccaataggcccaatgggcttaattttaaacaggccttcactcatgtccattaaggaaatgaaaccgtcggtacttgacatgtcggggacaatttgctaataggccattgttttttggtgggcctttagaagatgggcttttcttagtaagcccaaatgaagatgggcttggaaaaagtggtgtttttgatgaagtaatgagagggttgtactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120872" stop="122953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121172" g_stop="121432" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122653" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="787" r_length="526" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E728262" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121172" e_stop="121432"/>
          <exon e_start="122129" e_stop="122653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTAACCAATATATACACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGAC-ATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATG</genome_strand>
        <mrna_strand>TCCACTTATCCAATATATACACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACAATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGGGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGGTTGTACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340304" ref_strand="+" ref_description="SGN-E340304 [cTOF-2-M19]">
      <seq>acttatccaatatatacacactgatcaatttctttttatagcaagaatctctctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120875" stop="122739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121175" g_stop="121432" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122439" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="569" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E340304" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121175" e_stop="121432"/>
          <exon e_start="122129" e_stop="122439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAACCAATATATACACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGC</genome_strand>
        <mrna_strand>ACTTATCCAATATATACACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727518" ref_strand="+" ref_description="SGN-E727518 [LA14DG05]">
      <seq>acactgatcaatttctttttatagcaagaatctctctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggcccaataggcccaatgggcttaattttaaacaggccttcactcatgtccattaaggaaatgaaaccgtcggtacttgacatgtcggggacatttgctaataggccattgttttttggtgggcctttagaagatgggcttttcttagtaagcccaaatgaagatgggcttggaaaaagtggtgtttttgatgaagtaatgagaggtttgtactatggtacaaaagaaagtgtgggatgtgcttctgaaatggtgaaaagggatgttgttggggttgataattttaggttttttgatgggtattgtgcatgggaaaaagatcaattgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120892" stop="123068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121192" g_stop="121432" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122768" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="881" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E727518" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121192" e_stop="121432"/>
          <exon e_start="122129" e_stop="122768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGA</genome_strand>
        <mrna_strand>ACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGGGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547948" ref_strand="+" ref_description="SGN-E547948 [TUS-56-I23]">
      <seq>ctctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggcccaataggcccaatgggcttaattttaaacaggccttcactcatgtccattaaggaaatgaaaccgtcggtacttgacatgtcggggacatttgctaataggccattgttttttggtgggcctttagaagatgggcttttcttagtaagcccaaatgaagatgggcttggaaaaagtggtgtttttgatgaagtattgagaggtttgtactatggtacaaaagaaagtgtgggatgtgcttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120925" stop="122985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121225" g_stop="121432" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122685" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="765" r_length="557" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E547948" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121225" e_stop="121432"/>
          <exon e_start="122129" e_stop="122685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAA</genome_strand>
        <mrna_strand>CTCTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGGGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTATTGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267514" ref_strand="+" ref_description="SGN-E267514 [cLEI-8-A17]">
      <seq>tctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctncggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120926" stop="122715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121226" g_stop="121432" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122415" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="494" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E267514" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121226" e_stop="121432"/>
          <exon e_start="122129" e_stop="122415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACT</genome_strand>
        <mrna_strand>TCTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTNCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267134" ref_strand="+" ref_description="SGN-E267134 [cLEI-4-H22]">
      <seq>ctaaatctgcaattgcagtattatttggctaattaaggcaagacattcttaattcaatatggaagcttgctttgtcacttcaaagcccctctcagagaaactcttccctttgttaggatcaagagtttcttattctacaaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="120927" stop="122709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121227" g_stop="121432" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122409" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="487" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E267134" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121227" e_stop="121432"/>
          <exon e_start="122129" e_stop="122409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAA</genome_strand>
        <mrna_strand>CTAAATCTGCAATTGCAGTATTATTTGGCTAATTAAGGCAAGACATTCTTAATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730864" ref_strand="+" ref_description="SGN-E730864 [LA25BG05]">
      <seq>ctttaggaggaggtcatttgttagtcaatttcatcagcccaaaaaagttggtaatcctttttcagtgacatgttgccaggcaagttcaccattgccatcaccttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggcccaataggcccaatgggcttaattttaaacaggccttcactcatgtccattaaggaaatgaaaccgtcggtacttgacatgtcggggacatttgctaataggccattgttttttggtgggcctttagaagatgggcttttcttagtaagcccaaatgaagatgggcttggaaaaagtggtgtttttgatgaagtaatgagaggtttgtactatggtacaaaagaaagtgtgggatgtgcttctgaaatggtgaaaagggatgttgttggggttgataattttaggttttttgatgggtattgtgcatgggaaaaagatcaattgaaggatgagattagagctggttattggactgtagctgcttgtagcccaagtgtaattgggctttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="121066" stop="123132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121361" g_stop="121432" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122129" g_stop="122832" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="775" r_length="704" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E730864" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121361" e_stop="121432"/>
          <exon e_start="122129" e_stop="122832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACATGTAAGTGCCCTGTTTCTTGTTTCCTTACTTTTGTTTCTCAAAGGTATTTTCGTCGGAGGCTCGTATGAGTCAGTCCAGTAGTGATCAGGATCAAATCTCAATTACCTCCTAAGTTAAGTTAGTTGCACCGAATCTTCACTTTTGATGCCGCATCGTATCAGATTTTCCAAAATATGCTACTTTTGGAGAATCCAACACACATCCATTGACATTTTTAAGAGTGTGAGCAACTATTAATCTCATGATCACTAATGTAAAAGCGGAGTGAGGATTTTCATTAAGCGTATCAAAATATAAACCACACACCCGAAAAGCTAAAGTGTTTCAACATCTAATATAGTTAGTGTAGTTTCCTATCAAGGAGTTTCAATCGAACCCCTCGGTCCTATCTATCTCCGCCAATGGTATCTATCAACACGATTCAAAGTACGAGAGTCAAACCATCTAATTTTCATTAAGAACTTGATCCTAAAATGTTCAAGTTCTTAAAATAATAGAATTTACGTATTTAAGTAAAAGAACTACTAATCACAAATCCATAATTATTACGAATTTAAATGCTTATATATGAAACATTTTGAATCACATAAATTTTGGCACATACTGTAAAATGAAACAGATTTTCAGGTAATTTTCAAATTAAGCTATAAAAGATGATCAGATAAACATATATTAAGAAAATTTTGATACTTGTAGGTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGATGAGATTAGAGCTGGTTATTGGACTGTAGCTGCTTGTAGCCCAAGTGTAATTGGGCTTTCTGAT</genome_strand>
        <mrna_strand>CTTT-AGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCCAAAAAAGTTGGTAATCCTTTTTCAGTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGGGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGATGAGATTAGAGCTGGTTATTGGACTGTAGCTGCTTGTAGCCCAAGTGTAATTGGGCTTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344465" ref_strand="+" ref_description="SGN-E344465 [cTOF-14-O6]">
      <seq>tgggcccatttcgtgccgattgtgacggccggaggcggaggaagatcgtcgacggtgtcgggattgacgacggaggagcgatcttctgaccgggaagctcgttcgccggcgactaagcgtgctcgaaatgatcgccagtctgtttcagtgaaaggcctttcttcatcttgaggtgaaggtgatggcaatggtgaacttgcctggcaacctacaagtatcaaaattttcttaatatatgtttatctgatcatcttttatagcttaatttgaaaattacctgaaaatctgtttcattttacagtatgtgccaaaatttatgtgattcaaaatgtttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="122636" stop="121694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122336" g_stop="121986" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E344465" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122336" e_stop="121986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCCCATTTCGAGCCGATTGTGACGGCCGGAGGCGGAGGAAGATCGTCGACGGTGTCGGGATTGACGACGGAGGAGCGATCTTCTGACCGGGAAGCTCGTTCGCCGGCGACTAAGCGTGCTCGAAATGATCGCCAGTCTGTTTCAGTGAAAGGCCTTTCTTCATCTTGAGGTGAAGGTGATGGCAATGGTGAACTTGCCTGGCAACCTACAAGTATCAAAATTTTCTTAATATATGTTTATCTGATCATCTTTTATAGCTTAATTTGAAAATTACCTGAAAATCTGTTTCATTTTACAGTATGTGCCAAAATTTATGTGATTCAAAATGTTTCATATATAAGCATTTAA</genome_strand>
        <mrna_strand>TGGGCCCATTTCGTGCCGATTGTGACGGCCGGAGGCGGAGGAAGATCGTCGACGGTGTCGGGATTGACGACGGAGGAGCGATCTTCTGACCGGGAAGCTCGTTCGCCGGCGACTAAGCGTGCTCGAAATGATCGCCAGTCTGTTTCAGTGAAAGGCCTTTCTTCATCTTGAGGTGAAGGTGATGGCAATGGTGAACTTGCCTGGCAACCTACAAGTATCAAAATTTTCTTAATATATGTTTATCTGATCATCTTTTATAGCTTAATTTGAAAATTACCTGAAAATCTGTTTCATTTTACAGTATGTGCCAAAATTTATGTGATTCAAAATGTTTCATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287757" ref_strand="+" ref_description="SGN-E287757 [cLES-19-C5]">
      <seq>ttcacctcaagatgaagaaaggcctttcactgaaacagactggcgatcatttcgagcacgcttagtcgccggcgaacgagcttcccggtcagaagatcgctcctccgtcgtcaatcccgacaccgtcgacgatcttcctccgcctccggccgtcacaatcggcacgaaatgggcccacaccattcacgaaccggaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="121860" stop="122715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122160" g_stop="122415" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E287757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122160" e_stop="122415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACT</genome_strand>
        <mrna_strand>TTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCACGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537778" ref_strand="+" ref_description="SGN-E537778 [TUS-56-I23](-)">
      <seq>gaaaaaggttgtatactcatcgctaccgaaaagctggatggcgttcacatatttgaacggactgtagttctgttgttgtcaatgggcccaataggcccaatgggcttaattttaaacaggccttcactcatgtccattaaggaaatgaaaccgtcggtacttgacatgtcggggacatttgctaataggccattgttttttggtgggcctttagaagatgggcttttcttagtaagcccaaatgaagatgggcttggaaaaagtggtgtttttgatgaagtaatgagaggtttgtactatggtacaaaagaaagtgtgggatgtgcttctgaaatggtgaaaagggatgttgttggggttgataattttaggttttttgatgggtattgtgcatgggaaaaagatcaattgaaggatgagattagagctggttattggactgtagctgcttgtagcccaagtgtaattgggctttctgatgtgggaagtgttgggctttgggatgaagttcttgggcttatgactccaaagaaagtttggtgatgtgaatttttgagtttagatttgtgttgttgaaagtagaaggcccaaattattgtaaattattatgcattgttttttttaaccaattaaaaagataatgatattattgtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="+" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="122053" stop="123309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122353" g_stop="123009" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="697"/>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="+" ref_id="SGN-E537778" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122353" e_stop="123009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGATGAGATTAGAGCTGGTTATTGGACTGTAGCTGCTTGTAGCCCAAGTGTAATTGGGCTTTCTGATGTGGGAAGTGTTGGGCTTTGGGATGAAGTTCTTGGGCTTATGACTCCAAAGAAAGTTTGGTGATGTGAATTTTTGAGTTTAGATTTGTGTTGTTGAAAGTAGAAGGCCCAAATTATTGTAAATTATTATGCATTGTTTTTTTTAACCAATTAAAAAGATAATGATATTATTGTCTAA</genome_strand>
        <mrna_strand>GAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGGGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGATGAGATTAGAGCTGGTTATTGGACTGTAGCTGCTTGTAGCCCAAGTGTAATTGGGCTTTCTGATGTGGGAAGTGTTGGGCTTTGGGATGAAGTTCTTGGGCTTATGACTCCAAAGAAAGTTTGGTGATGTGAATTTTTGAGTTTAGATTTGTGTTGTTGAAAGTAGAAGGCCCAAATTATTGTAAATTATTATGCATTGTTTTTTTTAACCAATTAAAAAGATAATGATATTATTGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545967" ref_strand="+" ref_description="SGN-E545967 [TUS-69-B11](-)">
      <seq>cagaataataccaatgttgagaatgtgaagaaggctgctgtcattcattacaatggtcaatcgaagccttggcttgaaataggctttgagcatctccggcctttttggaccaagtatgttaacagcaccaatgatttcattaggaattgtcacatattggagtagtgtacgtgttatgctgcaaggacaatacgcaggatagaaattcaaatggcataggctttgctgaatatttgctagggaacttaaagtcgaatcgagaaggagattctgatacttgacagaattggctgggatatatattcaggtatgggatgtgtgctactttgactcacttctataaagagtacctgcgatactagcatggatatgagattcgttcttcccatctgtaaaataaaaatttgttgcctagcttgttgatgtgacaaagtacacattatatctgcactttaggtggatgtagtatacatttggctctcactgttaccatcagtgatacaaaatcgggacatcccgagaagaaaagctaggatggtggcgctcacttttggctatccatttggctccattagaggttgagatgattcttttggcttcatttcattattttttttacctagtcagtttgatcgccatcgcccttgttattttcttgattaaatcaatatcttgttattttagacagtagattatagaaattttaagtcccttgttaatgaactgtgtaggttatacatattggtacttttttgtatgatcaagagtaattatagacaaactcagattattattatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0025N15-LSlTg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0025N15.2" temp_strand="-" temp_description="C02HBa0025N15.2  AC215360.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0025N15 sequenced_by:kribb upload_account_name:korea">
        <position start="124949" stop="123558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124649" g_stop="123848" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0025N15.2" gen_strand="-" ref_id="SGN-E545967" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0025N15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124649" e_stop="123848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAATACCAATGTTGAGAATGTGAAGAAGGCTGCTGTCATTCATTACAATGGTCAATCGAAGCCTTGGCTTGAAATAGGATTTGAGCATCTCCGGCCTTTTTGGACCAAGTATGTTAACAGCACCAATGATTTCATTAAGAACTGTCACATATTGGAGTAGTGTACGTGTTATGCTGCAAGGACAATACGCAGGATAGAAATTCAAATGGCATAGGCTTTGCTGAATATTTGCTAGGGAACTTAAAATCGAATCGAGAAGGAGATTCTGATACTTGACAGAATTGGCTGGGATATATATTCAGGTATGGGATGTGTGCTACTTTGACTCACTTCTATGAAGAGTACCTGTGATACTAGCATGGATATGAGATTCGTTCTTCCCATTTGTAAAATAAAAATTCGTTGCCTAGCTTGTTGATGTGACAAAAGTACACATTATATCTGCACTTTAGATGGATGTAGTATACATTTGGCTCTCACTGTTACCATCAGTGATACAAAATCGGGACATAACGAGAAGAAAAGCTAGGAT-GTGGCGCTCACTTTTGGCTATACATTTGGCTCCATTAGAGGTTGAGATGATTCTTTTGGCTTCATTTCATTA-TTTTTTTACCTAGTCAGTTTGATCGCCATCGCCCTTGTTGTTTTC---------TCAATATCTTGTCATTTTAGACAGTAGATTATAGAAAATTTTAAGTCCCTTGTTAATGAACTGTGTAGGTTATACATATTGGTACTTTTTTGTATGATCAAGAGTAATTATAGACAAGCTCAGATTATTATTATTTTTTTTTATCAAA</genome_strand>
        <mrna_strand>CAGAATAATACCAATGTTGAGAATGTGAAGAAGGCTGCTGTCATTCATTACAATGGTCAATCGAAGCCTTGGCTTGAAATAGGCTTTGAGCATCTCCGGCCTTTTTGGACCAAGTATGTTAACAGCACCAATGATTTCATTAGGAATTGTCACATATTGGAGTAGTGTACGTGTTATGCTGCAAGGACAATACGCAGGATAGAAATTCAAATGGCATAGGCTTTGCTGAATATTTGCTAGGGAACTTAAAGTCGAATCGAGAAGGAGATTCTGATACTTGACAGAATTGGCTGGGATATATATTCAGGTATGGGATGTGTGCTACTTTGACTCACTTCTATAAAGAGTACCTGCGATACTAGCATGGATATGAGATTCGTTCTTCCCATCTGTAAAATAAAAATTTGTTGCCTAGCTTGTTGATGTGAC-AAAGTACACATTATATCTGCACTTTAGGTGGATGTAGTATACATTTGGCTCTCACTGTTACCATCAGTGATACAAAATCGGGACATCCCGAGAAGAAAAGCTAGGATGGTGGCGCTCACTTTTGGCTATCCATTTGGCTCCATTAGAGGTTGAGATGATTCTTTTGGCTTCATTTCATTATTTTTTTTACCTAGTCAGTTTGATCGCCATCGCCCTTGTTATTTTCTTGATTAAATCAATATCTTGTTATTTTAGACAGTAGATTATAG-AAATTTTAAGTCCCTTGTTAATGAACTGTGTAGGTTATACATATTGGTACTTTTTTGTATGATCAAGAGTAATTATAGACAAACTCAGATTATTATTATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>67</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9419" PGL_stop="11840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9419" e_stop="9536"/>
            <exon e_start="10147" e_stop="10283"/>
            <exon e_start="11460" e_stop="11840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9419" e_stop="9536" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9537" i_stop="10146" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10147" e_stop="10283" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="10284" i_stop="11459" i_length="1176"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="11460" e_stop="11840" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9419" stop="9536"/>
              <exon start="10147" stop="10283"/>
              <exon start="11460" stop="11840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9500" stop="9536"/>
              <exon start="10147" stop="10283"/>
              <exon start="11460" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9501" stop="9536"/>
              <exon start="10147" stop="10283"/>
              <exon start="11460" stop="11838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9501" stop="9536"/>
              <exon start="10147" stop="10283"/>
              <exon start="11460" stop="11752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9501" stop="9536"/>
              <exon start="10147" stop="10283"/>
              <exon start="11460" stop="11618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAATTAAGAAATGCAACCATTCTGATATGTTGTTAACTAGTCATTATTGTTCAAAAATAGCAACTCATGGAGGCACAGTTGTGGTGCAATAAGACTTACAATTGTATAG : GGACAGAGACATGGAGAATTCAACATCCACTCCAAATTTTGCATACAAGTAATTGGCAACAACCTATTTTTCAGCCTTTTAATTCCTCAATTTCCCACAGTCTGACTTGTAGACACATCCACCGCAATGGAATAAAG : ACATTTGCTACAAGAAGGAGAAGATCAAACATAGAAACAGACACTTATGTACTAATGGAACCTGGGAAGTCAGAGGAATTTGTTACTGAGGAAGAATTAAGAGACAAGTTAAAGAGTTGGTTAGAAAATTGGCCAGCCAAAACACTGCCACCAGACCTTGCTAGATTTGAAGATAGTGATGATGCTGTTGAATATTTAGTAAAATCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCCCTACAATGGTACCAAGTTCGTTTACAACAAGACATCATATGAAAGGACTCTCGATTTTTTTATAATCCGTTATTTTTTAAATAACAGTTGATGTAATTTTTCTTTGTATCATTTTAATTTTATTAAAAAAAAACACTG</gDNA_template>
            <first_frame> K  K  K  K  L  R  N  A  T  I  L  I  C  C  *  L  V  I  I  V  Q  K  *  Q  L  M  E  A  Q  L  W  C  N  K  T  Y  N  C  I   : G  T  E  T  W  R  I  Q  H  P  L  Q  I  L  H  T  S  N  W  Q  Q  P  I  F  Q  P  F  N  S  S  I  S  H  S  L  T  C  R  H  I  H  R  N  G  I  K  :  T  F  A  T  R  R  R  R  S  N  I  E  T  D  T  Y  V  L  M  E  P  G  K  S  E  E  F  V  T  E  E  E  L  R  D  K  L  K  S  W  L  E  N  W  P  A  K  T  L  P  P  D  L  A  R  F  E  D  S  D  D  A  V  E  Y  L  V  K  S  V  C  E  L  E  I  D  G  D  V  G  S  L  Q  W  Y  Q  V  R  L  Q  Q  D  I  I  *  K  D  S  R  F  F  Y  N  P  L  F  F  K  *  Q  L  M  *  F  F  F  V  S  F  *  F  Y  *  K  K  T  L </first_frame>
            <second_frame>  K  K  K  N  *  E  M  Q  P  F  *  Y  V  V  N  *  S  L  L  F  K  N  S  N  S  W  R  H  S  C  G  A  I  R  L  T  I  V  *  :  G  Q  R  H  G  E  F  N  I  H  S  K  F  C  I  Q  V  I  G  N  N  L  F  F  S  L  L  I  P  Q  F  P  T  V  *  L  V  D  T  S  T  A  M  E  *  R :   H  L  L  Q  E  G  E  D  Q  T  *  K  Q  T  L  M  Y  *  W  N  L  G  S  Q  R  N  L  L  L  R  K  N  *  E  T  S  *  R  V  G  *  K  I  G  Q  P  K  H  C  H  Q  T  L  L  D  L  K  I  V  M  M  L  L  N  I  *  *  N  L  F  V  N  L  K  L  M  E  M  L  V  P  Y  N  G  T  K  F  V  Y  N  K  T  S  Y  E  R  T  L  D  F  F  I  I  R  Y  F  L  N  N  S  *  C  N  F  S  L  Y  H  F  N  F  I  K  K  K  H   </second_frame>
            <third_frame>   K  K  K  I  K  K  C  N  H  S  D  M  L  L  T  S  H  Y  C  S  K  I  A  T  H  G  G  T  V  V  V  Q  *  D  L  Q  L  Y  R :   D  R  D  M  E  N  S  T  S  T  P  N  F  A  Y  K  *  L  A  T  T  Y  F  S  A  F  *  F  L  N  F  P  Q  S  D  L  *  T  H  P  P  Q  W  N  K   : D  I  C  Y  K  K  E  K  I  K  H  R  N  R  H  L  C  T  N  G  T  W  E  V  R  G  I  C  Y  *  G  R  I  K  R  Q  V  K  E  L  V  R  K  L  A  S  Q  N  T  A  T  R  P  C  *  I  *  R  *  *  *  C  C  *  I  F  S  K  I  C  L  *  T  *  N  *  W  R  C  W  F  P  T  M  V  P  S  S  F  T  T  R  H  H  M  K  G  L  S  I  F  L  *  S  V  I  F  *  I  T  V  D  V  I  F  L  C  I  I  L  I  L  L  K  K  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9488" stop="9536"/>
                    <exon start="10147" stop="10283"/>
                    <exon start="11460" stop="11744"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLMEAQLWCNKTYNCIGTETWRIQHPLQILHTSNWQQPIFQPFNSSISHSLTCRHIHRNGIKTFATRRRRSNIETDTYVLMEPGKSEEFVTEEELRDKLKSWLENWPAKTLPPDLARFEDSDDAVEYLVKSVCELEIDGDVGSLQWYQVRLQQDII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13048" PGL_stop="15941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13048" e_stop="13099"/>
            <exon e_start="14123" e_stop="14266"/>
            <exon e_start="14358" e_stop="14426"/>
            <exon e_start="14567" e_stop="14673"/>
            <exon e_start="15266" e_stop="15941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.932" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.872" e_score="0.986"/>
          <exon-intron don_prob="0.919" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13048" e_stop="13099" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="13100" i_stop="14122" i_length="1023"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="14123" e_stop="14266" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.932">
            <gDNA_intron_boundary i_start="14267" i_stop="14357" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="14358" e_stop="14426" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.872">
            <gDNA_intron_boundary i_start="14427" i_stop="14566" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14567" e_stop="14673" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.919" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14674" i_stop="15265" i_length="592"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="15266" e_stop="15941" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13048" stop="13099"/>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13049" stop="13099"/>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13051" stop="13099"/>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13051" stop="13099"/>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13063" stop="13099"/>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14123" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14138" stop="14266"/>
              <exon start="14358" stop="14426"/>
              <exon start="14567" stop="14673"/>
              <exon start="15266" stop="15298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281228" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14138" stop="14266"/>
              <exon start="14358" stop="14397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15578" stop="15941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTGAACTCACCTGGGTATAAGAAAAAATAAATAAAAAAAATCTTCGAAG : GTTTAAAGATGGCTTTATTCAATAGAATTGGAAATATGCTTAAACAGAGTGTAAGCAGACACACGAATTTGGAATTGTGTGCCACTAGAACCTCACTTTACCAGGCTATAAGAAGCATGTCTTCTTCAAAGCTTTTTGTTGGAG : GTCTCTCATATGGCACTGATGAAACCTCTCTGCGAGAGGCATTCTCCCAACATGGTCAAGTGATTGAAG : CTAGAGTTATTTTTGATCGTGACAGTGGGAGATCCAGAGGGTTTGGTTTTGTTACTTATACATCTGCTGAAGAAGCATCAAGTGCCCTGAGTGCCTTGGATGGCCAG : GATCTCCACGGGAGACGGATAAGGGTGAATTATGCCACAGAAAAGCGTCCTGGAGGATTCGGGCGTGGTTCTGGTGGTGGAGGTGGATTTAGCTATGGTGGGGGAGCTGGAGGTTACTCATATGGGAATTATGGAGGTGGTGGTAACTATGGTAGCAACAACAGTTACCCTGCAGGTGGTGGCAGCTATGGTGGGGATAGTTTTGGGGCTGGATATGGTGGTGGGAGTAGTGGAAGTTACAACGCTGGTGTTTCCGCTAGTAATGACTTCTTGAACAACTCTGAATTTGGTGGGAGCCCTGGGACCTCGCACAATGGTGGTGAAGAACAGCTTAGTGCAGACCAAGGGACTGAATCTGTAGACAATGATTTCACACCAGGTGTAGAAAGGAGCAGCAGCGACGACAATGATGAGCCAAAGGACTACGCCAACTCGAGGAGTTCATAATACGTCCTCATATGCTATTCACCAACTTTGGGTTTGATGAGTACATGTTCACAATACGTGTTGAGTTAAAAGAAAGTATATTCTATTTCCAGCAGGGTTGCTACTGGTTGAATGCTTCATCTAAGTTTAATCAATCTGTAGGATTACACTCTACTCGTTTCATAAATGTTTTAAGTTCATGGAGCTCTCCAAGTACTGATTTTGTGCAATGTACAGTGCTGAATCTTTT</gDNA_template>
            <first_frame> *  L  N  S  P  G  Y  K  K  K  *  I  K  K  I  F  E   : G  L  K  M  A  L  F  N  R  I  G  N  M  L  K  Q  S  V  S  R  H  T  N  L  E  L  C  A  T  R  T  S  L  Y  Q  A  I  R  S  M  S  S  S  K  L  F  V  G   : G  L  S  Y  G  T  D  E  T  S  L  R  E  A  F  S  Q  H  G  Q  V  I  E   : A  R  V  I  F  D  R  D  S  G  R  S  R  G  F  G  F  V  T  Y  T  S  A  E  E  A  S  S  A  L  S  A  L  D  G  Q  :  D  L  H  G  R  R  I  R  V  N  Y  A  T  E  K  R  P  G  G  F  G  R  G  S  G  G  G  G  G  F  S  Y  G  G  G  A  G  G  Y  S  Y  G  N  Y  G  G  G  G  N  Y  G  S  N  N  S  Y  P  A  G  G  G  S  Y  G  G  D  S  F  G  A  G  Y  G  G  G  S  S  G  S  Y  N  A  G  V  S  A  S  N  D  F  L  N  N  S  E  F  G  G  S  P  G  T  S  H  N  G  G  E  E  Q  L  S  A  D  Q  G  T  E  S  V  D  N  D  F  T  P  G  V  E  R  S  S  S  D  D  N  D  E  P  K  D  Y  A  N  S  R  S  S  *  Y  V  L  I  C  Y  S  P  T  L  G  L  M  S  T  C  S  Q  Y  V  L  S  *  K  K  V  Y  S  I  S  S  R  V  A  T  G  *  M  L  H  L  S  L  I  N  L  *  D  Y  T  L  L  V  S  *  M  F  *  V  H  G  A  L  Q  V  L  I  L  C  N  V  Q  C  *  I  F  </first_frame>
            <second_frame>  D  *  T  H  L  G  I  R  K  N  K  *  K  K  S  S  K  :  V  *  R  W  L  Y  S  I  E  L  E  I  C  L  N  R  V  *  A  D  T  R  I  W  N  C  V  P  L  E  P  H  F  T  R  L  *  E  A  C  L  L  Q  S  F  L  L  E  :  V  S  H  M  A  L  M  K  P  L  C  E  R  H  S  P  N  M  V  K  *  L  K  :  L  E  L  F  L  I  V  T  V  G  D  P  E  G  L  V  L  L  L  I  H  L  L  K  K  H  Q  V  P  *  V  P  W  M  A  R :   I  S  T  G  D  G  *  G  *  I  M  P  Q  K  S  V  L  E  D  S  G  V  V  L  V  V  E  V  D  L  A  M  V  G  E  L  E  V  T  H  M  G  I  M  E  V  V  V  T  M  V  A  T  T  V  T  L  Q  V  V  A  A  M  V  G  I  V  L  G  L  D  M  V  V  G  V  V  E  V  T  T  L  V  F  P  L  V  M  T  S  *  T  T  L  N  L  V  G  A  L  G  P  R  T  M  V  V  K  N  S  L  V  Q  T  K  G  L  N  L  *  T  M  I  S  H  Q  V  *  K  G  A  A  A  T  T  M  M  S  Q  R  T  T  P  T  R  G  V  H  N  T  S  S  Y  A  I  H  Q  L  W  V  *  *  V  H  V  H  N  T  C  *  V  K  R  K  Y  I  L  F  P  A  G  L  L  L  V  E  C  F  I  *  V  *  S  I  C  R  I  T  L  Y  S  F  H  K  C  F  K  F  M  E  L  S  K  Y  *  F  C  A  M  Y  S  A  E  S  F </second_frame>
            <third_frame>   T  E  L  T  W  V  *  E  K  I  N  K  K  N  L  R  R :   F  K  D  G  F  I  Q  *  N  W  K  Y  A  *  T  E  C  K  Q  T  H  E  F  G  I  V  C  H  *  N  L  T  L  P  G  Y  K  K  H  V  F  F  K  A  F  C  W  R :   S  L  I  W  H  *  *  N  L  S  A  R  G  I  L  P  T  W  S  S  D  *  S :   *  S  Y  F  *  S  *  Q  W  E  I  Q  R  V  W  F  C  Y  L  Y  I  C  *  R  S  I  K  C  P  E  C  L  G  W  P   : G  S  P  R  E  T  D  K  G  E  L  C  H  R  K  A  S  W  R  I  R  A  W  F  W  W  W  R  W  I  *  L  W  W  G  S  W  R  L  L  I  W  E  L  W  R  W  W  *  L  W  *  Q  Q  Q  L  P  C  R  W  W  Q  L  W  W  G  *  F  W  G  W  I  W  W  W  E  *  W  K  L  Q  R  W  C  F  R  *  *  *  L  L  E  Q  L  *  I  W  W  E  P  W  D  L  A  Q  W  W  *  R  T  A  *  C  R  P  R  D  *  I  C  R  Q  *  F  H  T  R  C  R  K  E  Q  Q  R  R  Q  *  *  A  K  G  L  R  Q  L  E  E  F  I  I  R  P  H  M  L  F  T  N  F  G  F  D  E  Y  M  F  T  I  R  V  E  L  K  E  S  I  F  Y  F  Q  Q  G  C  Y  W  L  N  A  S  S  K  F  N  Q  S  V  G  L  H  S  T  R  F  I  N  V  L  S  S  W  S  S  P  S  T  D  F  V  Q  C  T  V  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13081" stop="13099"/>
                    <exon start="14123" stop="14266"/>
                    <exon start="14358" stop="14426"/>
                    <exon start="14567" stop="14673"/>
                    <exon start="15266" stop="15712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKIFEGLKMALFNRIGNMLKQSVSRHTNLELCATRTSLYQAIRSMSSSKLFVGGLSYGTDETSLREAFSQHGQVIEARVIFDRDSGRSRGFGFVTYTSAEEASSALSALDGQDLHGRRIRVNYATEKRPGGFGRGSGGGGGFSYGGGAGGYSYGNYGGGGNYGSNNSYPAGGGSYGGDSFGAGYGGGSSGSYNAGVSASNDFLNNSEFGGSPGTSHNGGEEQLSADQGTESVDNDFTPGVERSSSDDNDEPKDYANSRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23757" PGL_stop="16160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23757" e_stop="23545"/>
            <exon e_start="22729" e_stop="22513"/>
            <exon e_start="22095" e_stop="21997"/>
            <exon e_start="21888" e_stop="21854"/>
            <exon e_start="21769" e_stop="21694"/>
            <exon e_start="20893" e_stop="20798"/>
            <exon e_start="20721" e_stop="20635"/>
            <exon e_start="20095" e_stop="20002"/>
            <exon e_start="19855" e_stop="19738"/>
            <exon e_start="19588" e_stop="19072"/>
            <exon e_start="17322" e_stop="17082"/>
            <exon e_start="16682" e_stop="16211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.592" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="0.989"/>
          <exon-intron don_prob="0.793" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23757" e_stop="23545" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.841">
            <gDNA_intron_boundary i_start="23544" i_stop="22730" i_length="815"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22729" e_stop="22513" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.955">
            <gDNA_intron_boundary i_start="22512" i_stop="22096" i_length="417"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22095" e_stop="21997" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21996" i_stop="21889" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21888" e_stop="21854" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21853" i_stop="21770" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21769" e_stop="21694" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.985">
            <gDNA_intron_boundary i_start="21693" i_stop="20894" i_length="800"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20893" e_stop="20798" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.592">
            <gDNA_intron_boundary i_start="20797" i_stop="20722" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="20721" e_stop="20635" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="20634" i_stop="20096" i_length="539"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="20095" e_stop="20002" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="20001" i_stop="19856" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19738" e_length="118"/>
          </exon>
          <intron i_serial="9" don_prob="0.793" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19737" i_stop="19589" i_length="149"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19588" e_stop="19072" e_length="517"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="17322" e_stop="17082" e_length="241"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399"/>
          </intron>
          <exon e_serial="12" e_score="0.989">
            <gDNA_exon_boundary e_start="16682" e_stop="16211" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23757" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21854"/>
              <exon start="21769" stop="21694"/>
              <exon start="20893" stop="20798"/>
              <exon start="20721" stop="20635"/>
              <exon start="20095" stop="20002"/>
              <exon start="19855" stop="19738"/>
              <exon start="19588" stop="19072"/>
              <exon start="17322" stop="17082"/>
              <exon start="16682" stop="16211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23753" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21854"/>
              <exon start="21769" stop="21694"/>
              <exon start="20893" stop="20798"/>
              <exon start="20721" stop="20700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23753" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21854"/>
              <exon start="21769" stop="21694"/>
              <exon start="20893" stop="20798"/>
              <exon start="20721" stop="20709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23750" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23664" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21854"/>
              <exon start="21769" stop="21694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23619" stop="23545"/>
              <exon start="22729" stop="22513"/>
              <exon start="22095" stop="21997"/>
              <exon start="21888" stop="21854"/>
              <exon start="21769" stop="21694"/>
              <exon start="20893" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19544" stop="19072"/>
              <exon start="17322" stop="17173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19527" stop="19072"/>
              <exon start="17322" stop="17082"/>
              <exon start="16682" stop="16533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19355" stop="19072"/>
              <exon start="17322" stop="17082"/>
              <exon start="16682" stop="16471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTACGGATTCTGAAAACCACAAATTCTTACAATTTGATGAATCCAAAATCTCAATCTGCCTGAAAATTCAATCCTTCTGCCGCTCCGTTGATTCAGAAGAAGCGTTTCAATTGCACGAACTAGAAATTTCTTCAGCAATGACGGAGGATAATTGCCCTAGAGTTTCATCTTCTGAAACCGTAGACTCCAATTCTTCATCGACGAAGCAAAG : GAAACGGAGAAAGTGGGATCAGCCTGCGGAGACATTCGTTCCAGAAGGGGTAGCGGTATCTGGGATTTTTCCATTGGCAAATACTGGTTCTCTTGCTGGTATCACACTACCTGGCGTGATTCCAGTCTTGGGTGCTGCTTTTACGAATCCTCTTACCACTATTGGTGCTACTACAGTGCAGCAGCTTCCTGTAATTATTGCCCAAAAATCAGTTCAA : CCGAAAATTCAGGATGAGTTGATAGCAAGAGAAATTGTCATTAATGATGCTGATCCGTCTGTTCGCTACAGGCTCACAAAGCGCCAAACACAAGAAGAG : ATTCAGAAGAGCACGGGTGCTGTGGTTATAACTAG : GGGTAAATACAAGCCTCCAAGCGCACCTTCTGATGGTGAAAAACCCCTATACCTTCATATTTCTGCTGGGGCACAT : CTAGAAACAACACTTGAGAGGATCAGAGCAGTTGATCGTGCTGCTGCTGTAGTGGAGGAAATGCTTAAGCAAGGTCCTGTTAACAATGGATTAAAG : GTTAATCATCTGCTGAGTACCTGTGTATACCTGGGCTTTGAGGCTGATCCATCAGCAAATATTACTGTGCGCATTCGTGGACCAAAT : GATCAGTATATTAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAG : ATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAG : AGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG : AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG : ATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATCTGATAATATCAGAGTGTAAGTGATGCTCTATGTAAAATGACTCGTAGAAATTCCGCAACCTTGTATTTCCATTCAGAAGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGAAATGCCAGCAGTTTAACCT</gDNA_template>
            <first_frame> H  Y  G  F  *  K  P  Q  I  L  T  I  *  *  I  Q  N  L  N  L  P  E  N  S  I  L  L  P  L  R  *  F  R  R  S  V  S  I  A  R  T  R  N  F  F  S  N  D  G  G  *  L  P  *  S  F  I  F  *  N  R  R  L  Q  F  F  I  D  E  A  K  :  E  T  E  K  V  G  S  A  C  G  D  I  R  S  R  R  G  S  G  I  W  D  F  S  I  G  K  Y  W  F  S  C  W  Y  H  T  T  W  R  D  S  S  L  G  C  C  F  Y  E  S  S  Y  H  Y  W  C  Y  Y  S  A  A  A  S  C  N  Y  C  P  K  I  S  S   : T  E  N  S  G  *  V  D  S  K  R  N  C  H  *  *  C  *  S  V  C  S  L  Q  A  H  K  A  P  N  T  R  R   : D  S  E  E  H  G  C  C  G  Y  N  *  :  G  *  I  Q  A  S  K  R  T  F  *  W  *  K  T  P  I  P  S  Y  F  C  W  G  T   : S  R  N  N  T  *  E  D  Q  S  S  *  S  C  C  C  C  S  G  G  N  A  *  A  R  S  C  *  Q  W  I  K   : G  *  S  S  A  E  Y  L  C  I  P  G  L  *  G  *  S  I  S  K  Y  Y  C  A  H  S  W  T  K   : *  S  V  Y  *  S  H  Y  E  *  N  W  S  N  C  L  A  K  R  T  W  F  G  I  F  R  *  R  T  G  R  R :   C  S  P  T  S  A  F  T  H  I  K  Q  *  Q  C  K  S  *  A  C  E  A  F  G  R  K  S  F  G  Y  Y  L  C  R  V  W  C  F  *  :  S  L  F  L  *  G  L  W  S  C  S  A  S  T  A  T  V  S  Q  R  S  G  F  W  K  *  I  R  S  Q  *  H  T  H  S  Q  C  S  C  T  D  F  E  L  L  N  C  S  S  S  S  R  D  C  S  C  R  W  D  W  C  C  F  S  G  Y  S  T  S  I  S  R  L  T  R  S  C  A  I  S  T  S  H  Q  L  L  S  S  S  I  S  Y  K  *  N  K  L  Y  W  L  *  W  Y  I  S  P  S  H  C  F  A  A  S  C  F  G  S  *  A  I  Y  F  S  S  H  F  N  S  S  S  S  N  N  G  T  K  H  H  F  T  D  K  Y  R  F  *  E  G  Q  A  P  C  T  E  A  *  I  S  R  I  A  G  W  W  K  R  P  S  N  C  K  P   : E  S  T  A  G  Y  G  A  S  N  A  S  G  T  N  F  R  E  R  *  Y  R  Q  N  W  Y  S  D  S  Q  K  V  G  S  A  L  I  Q  F  N  A  A  A  A  T  S  *  N  D  A  S  T  A  A  A  T  K  V  S  I  I  L  T  E  S  A  *  *  Q  Y  G  *  Q  S  T  K  *  N  C  T  R :   Y  I  S  P  A  N  G  I  R  G  *  R  R  R  R  R  *  *  *  S  N  *  R  T  F  E  K  *  L  K  C  G  S  D  S  K  A  I  L  G  C  L  I  I  *  P  L  H  I  S  E  D  F  G  N  S  *  M  C  I  I  S  *  M  V  V  F  N  *  P  G  S  G  C  E  I  *  N  M  Y  P  S  P  P  Q  Q  K  D  V  G  P  P  N  G  G  K  E  E  R  R  V  L  *  Y  C  A  N  L  I  I  S  E  C  K  *  C  S  M  *  N  D  S  *  K  F  R  N  L  V  F  P  F  R  S  C  L  L  L  A  C  S  F  T  L  N  S  L  *  N  K  E  M  P  A  V  *  P </first_frame>
            <second_frame>  I  T  D  S  E  N  H  K  F  L  Q  F  D  E  S  K  I  S  I  C  L  K  I  Q  S  F  C  R  S  V  D  S  E  E  A  F  Q  L  H  E  L  E  I  S  S  A  M  T  E  D  N  C  P  R  V  S  S  S  E  T  V  D  S  N  S  S  S  T  K  Q  R :   K  R  R  K  W  D  Q  P  A  E  T  F  V  P  E  G  V  A  V  S  G  I  F  P  L  A  N  T  G  S  L  A  G  I  T  L  P  G  V  I  P  V  L  G  A  A  F  T  N  P  L  T  T  I  G  A  T  T  V  Q  Q  L  P  V  I  I  A  Q  K  S  V  Q  :  P  K  I  Q  D  E  L  I  A  R  E  I  V  I  N  D  A  D  P  S  V  R  Y  R  L  T  K  R  Q  T  Q  E  E  :  I  Q  K  S  T  G  A  V  V  I  T  R :   G  K  Y  K  P  P  S  A  P  S  D  G  E  K  P  L  Y  L  H  I  S  A  G  A  H  :  L  E  T  T  L  E  R  I  R  A  V  D  R  A  A  A  V  V  E  E  M  L  K  Q  G  P  V  N  N  G  L  K  :  V  N  H  L  L  S  T  C  V  Y  L  G  F  E  A  D  P  S  A  N  I  T  V  R  I  R  G  P  N  :  D  Q  Y  I  N  H  I  M  N  E  T  G  A  T  V  L  L  R  G  R  G  S  G  Y  S  D  E  G  Q  G  E   : D  V  H  Q  P  L  H  L  L  I  S  S  N  N  S  A  S  L  E  R  A  K  L  L  A  E  N  L  L  D  T  I  C  A  E  C  G  A  S  R :   V  S  S  C  K  V  Y  G  A  V  P  P  P  L  Q  P  L  A  S  V  Q  V  S  G  S  E  S  E  V  N  N  T  P  T  A  N  V  A  A  Q  I  L  S  S  S  T  A  A  A  V  P  V  T  A  A  A  G  G  T  G  V  V  S  Q  G  T  V  P  Q  S  L  G  S  L  D  P  V  P  S  Q  P  P  T  S  C  Y  P  H  Q  L  V  T  S  R  T  S  Y  I  G  Y  D  G  I  Y  P  Q  A  T  A  L  Q  Q  V  A  L  A  L  R  Q  S  T  S  P  V  T  S  T  V  P  P  A  T  T  G  P  S  I  T  S  Q  T  S  T  G  S  E  K  D  K  R  P  A  Q  K  R  K  F  Q  E  L  P  A  G  G  K  G  Q  A  T  V  N  Q  :  N  P  L  Q  A  T  E  L  L  M  L  Q  E  R  I  S  E  K  G  D  T  D  K  I  G  I  P  T  P  R  K  L  V  Q  P  L  S  S  S  M  L  P  P  P  P  P  R  M  M  P  P  P  P  P  P  P  K  F  Q  S  S  S  Q  K  V  H  D  N  N  M  V  N  K  A  P  S  K  I  V  P   : D  T  L  V  Q  L  M  E  Y  G  D  D  D  D  D  D  D  N  D  E  A  I  D  G  P  L  K  S  S  S  S  A  V  A  T  P  K  P  F  W  A  V  *  *  Y  D  H  C  T  S  L  K  I  L  A  T  A  E  C  A  L  *  V  E  W  L  F  S  I  D  L  E  V  A  V  K  Y  K  I  C  T  L  P  H  P  S  K  K  M  W  G  H  Q  M  E  E  K  R  K  G  E  F  C  S  I  V  P  I  *  *  Y  Q  S  V  S  D  A  L  C  K  M  T  R  R  N  S  A  T  L  Y  F  H  S  E  V  V  C  C  W  L  V  V  S  L  *  T  L  Y  E  T  K  K  C  Q  Q  F  N   </second_frame>
            <third_frame>   L  R  I  L  K  T  T  N  S  Y  N  L  M  N  P  K  S  Q  S  A  *  K  F  N  P  S  A  A  P  L  I  Q  K  K  R  F  N  C  T  N  *  K  F  L  Q  Q  *  R  R  I  I  A  L  E  F  H  L  L  K  P  *  T  P  I  L  H  R  R  S  K   : G  N  G  E  S  G  I  S  L  R  R  H  S  F  Q  K  G  *  R  Y  L  G  F  F  H  W  Q  I  L  V  L  L  L  V  S  H  Y  L  A  *  F  Q  S  W  V  L  L  L  R  I  L  L  P  L  L  V  L  L  Q  C  S  S  F  L  *  L  L  P  K  N  Q  F  N :   R  K  F  R  M  S  *  *  Q  E  K  L  S  L  M  M  L  I  R  L  F  A  T  G  S  Q  S  A  K  H  K  K  R :   F  R  R  A  R  V  L  W  L  *  L   : G  V  N  T  S  L  Q  A  H  L  L  M  V  K  N  P  Y  T  F  I  F  L  L  G  H  I :   *  K  Q  H  L  R  G  S  E  Q  L  I  V  L  L  L  *  W  R  K  C  L  S  K  V  L  L  T  M  D  *  R :   L  I  I  C  *  V  P  V  Y  T  W  A  L  R  L  I  H  Q  Q  I  L  L  C  A  F  V  D  Q  M :   I  S  I  L  I  T  L  *  M  K  L  E  Q  L  S  C  *  E  D  V  V  R  D  I  Q  M  K  D  R  E  K  :  M  F  T  N  L  C  I  Y  S  Y  Q  A  I  T  V  Q  V  L  S  V  R  S  F  W  Q  K  I  F  W  I  L  F  V  Q  S  V  V  L  L   : E  S  L  L  V  R  F  M  E  L  F  R  L  H  C  N  R  *  P  A  F  R  F  L  E  V  N  Q  K  S  I  T  H  P  Q  P  M  *  L  H  R  F  *  A  P  Q  L  Q  Q  Q  F  P  *  L  Q  L  Q  V  G  L  V  L  F  L  R  V  Q  Y  L  N  L  *  A  H  *  I  L  C  H  L  N  L  P  P  V  V  I  L  I  N  *  L  Q  V  E  Q  A  I  L  A  M  M  V  Y  I  P  K  P  L  L  C  S  K  L  L  W  L  L  G  N  L  L  L  Q  S  L  Q  Q  F  L  Q  Q  Q  R  D  Q  A  S  L  H  R  Q  V  Q  V  L  R  R  T  S  A  L  H  R  S  V  N  F  K  N  C  R  L  V  E  K  A  K  Q  L  *  T  R :   I  H  C  R  L  R  S  F  *  C  F  R  N  E  F  Q  R  K  V  I  Q  T  K  L  V  F  R  L  P  E  S  W  F  S  P  Y  P  V  Q  C  C  R  R  H  L  L  E  *  C  L  H  R  R  R  H  Q  S  F  N  H  P  H  R  K  C  M  I  T  I  W  L  T  K  H  Q  V  K  L  Y  Q  :  I  H  *  S  S  *  W  N  T  G  M  T  T  T  T  T  I  M  M  K  Q  L  T  D  L  *  K  V  A  Q  V  R  *  R  L  Q  S  H  S  G  L  F  N  N  M  T  T  A  H  L  *  R  F  W  Q  Q  L  N  V  H  Y  K  L  N  G  C  F  Q  L  T  W  K  W  L  *  N  I  K  Y  V  P  F  P  T  P  A  K  R  C  G  A  T  K  W  R  K  R  G  K  E  S  S  V  V  L  C  Q  S  D  N  I  R  V  *  V  M  L  Y  V  K  *  L  V  E  I  P  Q  P  C  I  S  I  Q  K  L  F  A  A  G  L  *  F  H  S  E  L  F  M  K  Q  R  N  A  S  S  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23756" stop="23545"/>
                    <exon start="22729" stop="22513"/>
                    <exon start="22095" stop="21997"/>
                    <exon start="21888" stop="21854"/>
                    <exon start="21769" stop="21694"/>
                    <exon start="20893" stop="20798"/>
                    <exon start="20721" stop="20635"/>
                    <exon start="20095" stop="20002"/>
                    <exon start="19855" stop="19738"/>
                    <exon start="19588" stop="19072"/>
                    <exon start="17322" stop="17082"/>
                    <exon start="16682" stop="16555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1917</number_coding_nucleotides>
                  <number_encoded_amino_acids>639</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITDSENHKFLQFDESKISICLKIQSFCRSVDSEEAFQLHELEISSAMTEDNCPRVSSSETVDSNSSSTKQRKRRKWDQPAETFVPEGVAVSGIFPLANTGSLAGITLPGVIPVLGAAFTNPLTTIGATTVQQLPVIIAQKSVQPKIQDELIAREIVINDADPSVRYRLTKRQTQEEIQKSTGAVVITRGKYKPPSAPSDGEKPLYLHISAGAHLETTLERIRAVDRAAAVVEEMLKQGPVNNGLKVNHLLSTCVYLGFEADPSANITVRIRGPNDQYINHIMNETGATVLLRGRGSGYSDEGQGEDVHQPLHLLISSNNSASLERAKLLAENLLDTICAECGASRVSSCKVYGAVPPPLQPLASVQVSGSESEVNNTPTANVAAQILSSSTAAAVPVTAAAGGTGVVSQGTVPQSLGSLDPVPSQPPTSCYPHQLVTSRTSYIGYDGIYPQATALQQVALALRQSTSPVTSTVPPATTGPSITSQTSTGSEKDKRPAQKRKFQELPAGGKGQATVNQNPLQATELLMLQERISEKGDTDKIGIPTPRKLVQPLSSSMLPPPPPRMMPPPPPPPKFQSSSQKVHDNNMVNKAPSKIVPDTLVQLMEYGDDDDDDDNDEAIDGPLKSSSSAVATPKPFWAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20503" e_stop="20002"/>
            <exon e_start="19855" e_stop="19738"/>
            <exon e_start="19588" e_stop="19072"/>
            <exon e_start="17322" e_stop="17082"/>
            <exon e_start="16682" e_stop="16471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="0.996"/>
          <exon-intron don_prob="0.793" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="20503" e_stop="20002" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="20001" i_stop="19856" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19738" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.793" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19737" i_stop="19589" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19588" e_stop="19072" e_length="517"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19071" i_stop="17323" i_length="1749"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17322" e_stop="17082" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="16682" e_stop="16471" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20503" stop="20002"/>
              <exon start="19855" stop="19738"/>
              <exon start="19588" stop="19510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20503" stop="20267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19544" stop="19072"/>
              <exon start="17322" stop="17173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19527" stop="19072"/>
              <exon start="17322" stop="17082"/>
              <exon start="16682" stop="16533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19355" stop="19072"/>
              <exon start="17322" stop="17082"/>
              <exon start="16682" stop="16471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATATGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGGCTAATTATCTTATTTATCTCTTTTGGCATTATGATGCTTGATGTGCTCCTTTAAACTTTATTTTTATTGATAGAAAGCCAAGAGTTTCTAATGTTCTGAGCTCTCTCTGACATCTCCGTCCATTTGGAGAGATTTTCTTCTGTGCTGGTGGTTGGCTTTTTGTAAGTGCAGGATCAGTATATTAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAG : ATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAG : AGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG : AATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG : ATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTG</gDNA_template>
            <first_frame> I  G  S  F  V  F  C  D  L  L  S  I  C  L  I  N  F  F  Y  L  Y  A  V  I  C  W  Q  I  *  I  P  G  S  S  F  S  C  Y  F  S  V  M  D  Q  I  L  A  S  C  I  L  F  I  D  Q  I  M  V  *  V  I  I  *  L  F  L  P  V  V  W  V  *  S  I  L  Y  P  A  W  L  I  I  L  F  I  S  F  G  I  M  M  L  D  V  L  L  *  T  L  F  L  L  I  E  S  Q  E  F  L  M  F  *  A  L  S  D  I  S  V  H  L  E  R  F  S  S  V  L  V  V  G  F  L  *  V  Q  D  Q  Y  I  N  H  I  M  N  E  T  G  A  T  V  L  L  R  G  R  G  S  G  Y  S  D  E  G  Q  G  E   : D  V  H  Q  P  L  H  L  L  I  S  S  N  N  S  A  S  L  E  R  A  K  L  L  A  E  N  L  L  D  T  I  C  A  E  C  G  A  S  R :   V  S  S  C  K  V  Y  G  A  V  P  P  P  L  Q  P  L  A  S  V  Q  V  S  G  S  E  S  E  V  N  N  T  P  T  A  N  V  A  A  Q  I  L  S  S  S  T  A  A  A  V  P  V  T  A  A  A  G  G  T  G  V  V  S  Q  G  T  V  P  Q  S  L  G  S  L  D  P  V  P  S  Q  P  P  T  S  C  Y  P  H  Q  L  V  T  S  R  T  S  Y  I  G  Y  D  G  I  Y  P  Q  A  T  A  L  Q  Q  V  A  L  A  L  R  Q  S  T  S  P  V  T  S  T  V  P  P  A  T  T  G  P  S  I  T  S  Q  T  S  T  G  S  E  K  D  K  R  P  A  Q  K  R  K  F  Q  E  L  P  A  G  G  K  G  Q  A  T  V  N  Q  :  N  P  L  Q  A  T  E  L  L  M  L  Q  E  R  I  S  E  K  G  D  T  D  K  I  G  I  P  T  P  R  K  L  V  Q  P  L  S  S  S  M  L  P  P  P  P  P  R  M  M  P  P  P  P  P  P  P  K  F  Q  S  S  S  Q  K  V  H  D  N  N  M  V  N  K  A  P  S  K  I  V  P   : D  T  L  V  Q  L  M  E  Y  G  D  D  D  D  D  D  D  N  D  E  A  I  D  G  P  L  K  S  S  S  S  A  V  A  T  P  K  P  F  W  A  V  *  *  Y  D  H  C  T  S  L  K  I  L  A  T  A  E  C  A  L  *  V  E  W  L  F  S  I  D  L </first_frame>
            <second_frame>  L  D  P  L  F  F  V  I  Y  Y  P  F  A  L  S  I  S  F  T  Y  M  L  *  F  A  G  K  F  K  Y  R  E  V  H  S  A  V  T  S  L  L  W  I  R  Y  W  H  H  V  F  S  L  L  I  R  L  W  S  E  *  L  Y  D  C  F  F  Q  *  F  G  C  S  P  F  S  T  L  P  G  *  L  S  Y  L  S  L  L  A  L  *  C  L  M  C  S  F  K  L  Y  F  Y  *  *  K  A  K  S  F  *  C  S  E  L  S  L  T  S  P  S  I  W  R  D  F  L  L  C  W  W  L  A  F  C  K  C  R  I  S  I  L  I  T  L  *  M  K  L  E  Q  L  S  C  *  E  D  V  V  R  D  I  Q  M  K  D  R  E  K  :  M  F  T  N  L  C  I  Y  S  Y  Q  A  I  T  V  Q  V  L  S  V  R  S  F  W  Q  K  I  F  W  I  L  F  V  Q  S  V  V  L  L   : E  S  L  L  V  R  F  M  E  L  F  R  L  H  C  N  R  *  P  A  F  R  F  L  E  V  N  Q  K  S  I  T  H  P  Q  P  M  *  L  H  R  F  *  A  P  Q  L  Q  Q  Q  F  P  *  L  Q  L  Q  V  G  L  V  L  F  L  R  V  Q  Y  L  N  L  *  A  H  *  I  L  C  H  L  N  L  P  P  V  V  I  L  I  N  *  L  Q  V  E  Q  A  I  L  A  M  M  V  Y  I  P  K  P  L  L  C  S  K  L  L  W  L  L  G  N  L  L  L  Q  S  L  Q  Q  F  L  Q  Q  Q  R  D  Q  A  S  L  H  R  Q  V  Q  V  L  R  R  T  S  A  L  H  R  S  V  N  F  K  N  C  R  L  V  E  K  A  K  Q  L  *  T  R :   I  H  C  R  L  R  S  F  *  C  F  R  N  E  F  Q  R  K  V  I  Q  T  K  L  V  F  R  L  P  E  S  W  F  S  P  Y  P  V  Q  C  C  R  R  H  L  L  E  *  C  L  H  R  R  R  H  Q  S  F  N  H  P  H  R  K  C  M  I  T  I  W  L  T  K  H  Q  V  K  L  Y  Q  :  I  H  *  S  S  *  W  N  T  G  M  T  T  T  T  T  I  M  M  K  Q  L  T  D  L  *  K  V  A  Q  V  R  *  R  L  Q  S  H  S  G  L  F  N  N  M  T  T  A  H  L  *  R  F  W  Q  Q  L  N  V  H  Y  K  L  N  G  C  F  Q  L  T   </second_frame>
            <third_frame>   W  I  L  C  F  L  *  F  T  I  H  L  P  Y  Q  F  L  L  P  I  C  C  D  L  L  A  N  L  N  T  G  K  F  I  Q  L  L  L  L  C  Y  G  S  D  I  G  I  M  Y  S  L  Y  *  S  D  Y  G  L  S  N  Y  M  I  V  S  S  S  S  L  G  V  V  H  S  L  P  C  L  A  N  Y  L  I  Y  L  F  W  H  Y  D  A  *  C  A  P  L  N  F  I  F  I  D  R  K  P  R  V  S  N  V  L  S  S  L  *  H  L  R  P  F  G  E  I  F  F  C  A  G  G  W  L  F  V  S  A  G  S  V  Y  *  S  H  Y  E  *  N  W  S  N  C  L  A  K  R  T  W  F  G  I  F  R  *  R  T  G  R  R :   C  S  P  T  S  A  F  T  H  I  K  Q  *  Q  C  K  S  *  A  C  E  A  F  G  R  K  S  F  G  Y  Y  L  C  R  V  W  C  F  *  :  S  L  F  L  *  G  L  W  S  C  S  A  S  T  A  T  V  S  Q  R  S  G  F  W  K  *  I  R  S  Q  *  H  T  H  S  Q  C  S  C  T  D  F  E  L  L  N  C  S  S  S  S  R  D  C  S  C  R  W  D  W  C  C  F  S  G  Y  S  T  S  I  S  R  L  T  R  S  C  A  I  S  T  S  H  Q  L  L  S  S  S  I  S  Y  K  *  N  K  L  Y  W  L  *  W  Y  I  S  P  S  H  C  F  A  A  S  C  F  G  S  *  A  I  Y  F  S  S  H  F  N  S  S  S  S  N  N  G  T  K  H  H  F  T  D  K  Y  R  F  *  E  G  Q  A  P  C  T  E  A  *  I  S  R  I  A  G  W  W  K  R  P  S  N  C  K  P   : E  S  T  A  G  Y  G  A  S  N  A  S  G  T  N  F  R  E  R  *  Y  R  Q  N  W  Y  S  D  S  Q  K  V  G  S  A  L  I  Q  F  N  A  A  A  A  T  S  *  N  D  A  S  T  A  A  A  T  K  V  S  I  I  L  T  E  S  A  *  *  Q  Y  G  *  Q  S  T  K  *  N  C  T  R :   Y  I  S  P  A  N  G  I  R  G  *  R  R  R  R  R  *  *  *  S  N  *  R  T  F  E  K  *  L  K  C  G  S  D  S  K  A  I  L  G  C  L  I  I  *  P  L  H  I  S  E  D  F  G  N  S  *  M  C  I  I  S  *  M  V  V  F  N  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20101" stop="20002"/>
                    <exon start="19855" stop="19738"/>
                    <exon start="19588" stop="19072"/>
                    <exon start="17322" stop="17082"/>
                    <exon start="16682" stop="16555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQDQYINHIMNETGATVLLRGRGSGYSDEGQGEDVHQPLHLLISSNNSASLERAKLLAENLLDTICAECGASRVSSCKVYGAVPPPLQPLASVQVSGSESEVNNTPTANVAAQILSSSTAAAVPVTAAAGGTGVVSQGTVPQSLGSLDPVPSQPPTSCYPHQLVTSRTSYIGYDGIYPQATALQQVALALRQSTSPVTSTVPPATTGPSITSQTSTGSEKDKRPAQKRKFQELPAGGKGQATVNQNPLQATELLMLQERISEKGDTDKIGIPTPRKLVQPLSSSMLPPPPPRMMPPPPPPPKFQSSSQKVHDNNMVNKAPSKIVPDTLVQLMEYGDDDDDDDNDEAIDGPLKSSSSAVATPKPFWAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20503" e_stop="20002"/>
            <exon e_start="19855" e_stop="19738"/>
            <exon e_start="19588" e_stop="19072"/>
            <exon e_start="17913" e_stop="17507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="0.996"/>
          <exon-intron don_prob="0.793" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.979"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="20503" e_stop="20002" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="20001" i_stop="19856" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19738" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.793" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19737" i_stop="19589" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="19588" e_stop="19072" e_length="517"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="19071" i_stop="17914" i_length="1158"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="17913" e_stop="17507" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20503" stop="20002"/>
              <exon start="19855" stop="19738"/>
              <exon start="19588" stop="19510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20503" stop="20267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19557" stop="19072"/>
              <exon start="17913" stop="17560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19172" stop="19072"/>
              <exon start="17913" stop="17507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGATCCTTTGTTTTTTGTGATTTACTATCCATTTGCCTTATCAATTTCTTTTACCTATATGCTGTGATTTGCTGGCAAATTTAAATACCGGGAAGTTCATTCAGCTGTTACTTCTCTGTTATGGATCAGATATTGGCATCATGTATTCTCTTTATTGATCAGATTATGGTCTGAGTAATTATATGATTGTTTCTTCCAGTAGTTTGGGTGTAGTCCATTCTCTACCCTGCCTGGCTAATTATCTTATTTATCTCTTTTGGCATTATGATGCTTGATGTGCTCCTTTAAACTTTATTTTTATTGATAGAAAGCCAAGAGTTTCTAATGTTCTGAGCTCTCTCTGACATCTCCGTCCATTTGGAGAGATTTTCTTCTGTGCTGGTGGTTGGCTTTTTGTAAGTGCAGGATCAGTATATTAATCACATTATGAATGAAACTGGAGCAACTGTCTTGCTAAGAGGACGTGGTTCGGGATATTCAGATGAAGGACAGGGAGAAG : ATGTTCACCAACCTCTGCATTTACTCATATCAAGCAATAACAGTGCAAGTCTTGAGCGTGCGAAGCTTTTGGCAGAAAATCTTTTGGATACTATTTGTGCAGAGTGTGGTGCTTCTAG : AGTCTCTTCTTGTAAGGTTTATGGAGCTGTTCCGCCTCCACTGCAACCGTTAGCCAGCGTTCAGGTTTCTGGAAGTGAATCAGAAGTCAATAACACACCCACAGCCAATGTAGCTGCACAGATTTTGAGCTCCTCAACTGCAGCAGCAGTTCCCGTGACTGCAGCTGCAGGTGGGACTGGTGTTGTTTCTCAGGGTACAGTACCTCAATCTCTAGGCTCACTAGATCCTGTGCCATCTCAACCTCCCACCAGTTGTTATCCTCATCAATTAGTTACAAGTAGAACAAGCTATATTGGCTATGATGGTATATATCCCCAAGCCACTGCTTTGCAGCAAGTTGCTTTGGCTCTTAGGCAATCTACTTCTCCAGTCACTTCAACAGTTCCTCCAGCAACAACGGGACCAAGCATCACTTCACAGACAAGTACAGGTTCTGAGAAGGACAAGCGCCCTGCACAGAAGCGTAAATTTCAAGAATTGCCGGCTGGTGGAAAAGGCCAAGCAACTGTAAACCAG : GTAATTTCTCTGACCTTGTATGAAGCTAACAGGCTGTGGAACTCTGTTGGACCTTTGTATGTTTCACAGGATTCTGGATACGGAGGAGGCATGGGGTTGCTACGTGCAATTTCAGTGTTATGGTGCCGATGCAAAGATGCCATGCCCTTCTGGTTTAGGCATTTTGTTAAATGTTAATATGCTAATATGAAATGCACATTTTTAATCAACTTTGCTTCAAGTACTAAAAGGGTAATGAGATCGAGCTCACAGTACATTCTGCCTGTGAGGCTTTCAAACTGTTTCAACTTTACTCTAGAAGATAAAATGTTTTCTATTGGTATCTGCAATATATGCATTTTCTAAACATGTTGATCTAAGCTCCTTGTAACAAGTGAGAGAAAAAAAAGTCAAGCTGCATCTTACAC</gDNA_template>
            <first_frame> I  G  S  F  V  F  C  D  L  L  S  I  C  L  I  N  F  F  Y  L  Y  A  V  I  C  W  Q  I  *  I  P  G  S  S  F  S  C  Y  F  S  V  M  D  Q  I  L  A  S  C  I  L  F  I  D  Q  I  M  V  *  V  I  I  *  L  F  L  P  V  V  W  V  *  S  I  L  Y  P  A  W  L  I  I  L  F  I  S  F  G  I  M  M  L  D  V  L  L  *  T  L  F  L  L  I  E  S  Q  E  F  L  M  F  *  A  L  S  D  I  S  V  H  L  E  R  F  S  S  V  L  V  V  G  F  L  *  V  Q  D  Q  Y  I  N  H  I  M  N  E  T  G  A  T  V  L  L  R  G  R  G  S  G  Y  S  D  E  G  Q  G  E   : D  V  H  Q  P  L  H  L  L  I  S  S  N  N  S  A  S  L  E  R  A  K  L  L  A  E  N  L  L  D  T  I  C  A  E  C  G  A  S  R :   V  S  S  C  K  V  Y  G  A  V  P  P  P  L  Q  P  L  A  S  V  Q  V  S  G  S  E  S  E  V  N  N  T  P  T  A  N  V  A  A  Q  I  L  S  S  S  T  A  A  A  V  P  V  T  A  A  A  G  G  T  G  V  V  S  Q  G  T  V  P  Q  S  L  G  S  L  D  P  V  P  S  Q  P  P  T  S  C  Y  P  H  Q  L  V  T  S  R  T  S  Y  I  G  Y  D  G  I  Y  P  Q  A  T  A  L  Q  Q  V  A  L  A  L  R  Q  S  T  S  P  V  T  S  T  V  P  P  A  T  T  G  P  S  I  T  S  Q  T  S  T  G  S  E  K  D  K  R  P  A  Q  K  R  K  F  Q  E  L  P  A  G  G  K  G  Q  A  T  V  N  Q  :  V  I  S  L  T  L  Y  E  A  N  R  L  W  N  S  V  G  P  L  Y  V  S  Q  D  S  G  Y  G  G  G  M  G  L  L  R  A  I  S  V  L  W  C  R  C  K  D  A  M  P  F  W  F  R  H  F  V  K  C  *  Y  A  N  M  K  C  T  F  L  I  N  F  A  S  S  T  K  R  V  M  R  S  S  S  Q  Y  I  L  P  V  R  L  S  N  C  F  N  F  T  L  E  D  K  M  F  S  I  G  I  C  N  I  C  I  F  *  T  C  *  S  K  L  L  V  T  S  E  R  K  K  S  Q  A  A  S  Y   </first_frame>
            <second_frame>  L  D  P  L  F  F  V  I  Y  Y  P  F  A  L  S  I  S  F  T  Y  M  L  *  F  A  G  K  F  K  Y  R  E  V  H  S  A  V  T  S  L  L  W  I  R  Y  W  H  H  V  F  S  L  L  I  R  L  W  S  E  *  L  Y  D  C  F  F  Q  *  F  G  C  S  P  F  S  T  L  P  G  *  L  S  Y  L  S  L  L  A  L  *  C  L  M  C  S  F  K  L  Y  F  Y  *  *  K  A  K  S  F  *  C  S  E  L  S  L  T  S  P  S  I  W  R  D  F  L  L  C  W  W  L  A  F  C  K  C  R  I  S  I  L  I  T  L  *  M  K  L  E  Q  L  S  C  *  E  D  V  V  R  D  I  Q  M  K  D  R  E  K  :  M  F  T  N  L  C  I  Y  S  Y  Q  A  I  T  V  Q  V  L  S  V  R  S  F  W  Q  K  I  F  W  I  L  F  V  Q  S  V  V  L  L   : E  S  L  L  V  R  F  M  E  L  F  R  L  H  C  N  R  *  P  A  F  R  F  L  E  V  N  Q  K  S  I  T  H  P  Q  P  M  *  L  H  R  F  *  A  P  Q  L  Q  Q  Q  F  P  *  L  Q  L  Q  V  G  L  V  L  F  L  R  V  Q  Y  L  N  L  *  A  H  *  I  L  C  H  L  N  L  P  P  V  V  I  L  I  N  *  L  Q  V  E  Q  A  I  L  A  M  M  V  Y  I  P  K  P  L  L  C  S  K  L  L  W  L  L  G  N  L  L  L  Q  S  L  Q  Q  F  L  Q  Q  Q  R  D  Q  A  S  L  H  R  Q  V  Q  V  L  R  R  T  S  A  L  H  R  S  V  N  F  K  N  C  R  L  V  E  K  A  K  Q  L  *  T  R :   *  F  L  *  P  C  M  K  L  T  G  C  G  T  L  L  D  L  C  M  F  H  R  I  L  D  T  E  E  A  W  G  C  Y  V  Q  F  Q  C  Y  G  A  D  A  K  M  P  C  P  S  G  L  G  I  L  L  N  V  N  M  L  I  *  N  A  H  F  *  S  T  L  L  Q  V  L  K  G  *  *  D  R  A  H  S  T  F  C  L  *  G  F  Q  T  V  S  T  L  L  *  K  I  K  C  F  L  L  V  S  A  I  Y  A  F  S  K  H  V  D  L  S  S  L  *  Q  V  R  E  K  K  V  K  L  H  L  T  </second_frame>
            <third_frame>   W  I  L  C  F  L  *  F  T  I  H  L  P  Y  Q  F  L  L  P  I  C  C  D  L  L  A  N  L  N  T  G  K  F  I  Q  L  L  L  L  C  Y  G  S  D  I  G  I  M  Y  S  L  Y  *  S  D  Y  G  L  S  N  Y  M  I  V  S  S  S  S  L  G  V  V  H  S  L  P  C  L  A  N  Y  L  I  Y  L  F  W  H  Y  D  A  *  C  A  P  L  N  F  I  F  I  D  R  K  P  R  V  S  N  V  L  S  S  L  *  H  L  R  P  F  G  E  I  F  F  C  A  G  G  W  L  F  V  S  A  G  S  V  Y  *  S  H  Y  E  *  N  W  S  N  C  L  A  K  R  T  W  F  G  I  F  R  *  R  T  G  R  R :   C  S  P  T  S  A  F  T  H  I  K  Q  *  Q  C  K  S  *  A  C  E  A  F  G  R  K  S  F  G  Y  Y  L  C  R  V  W  C  F  *  :  S  L  F  L  *  G  L  W  S  C  S  A  S  T  A  T  V  S  Q  R  S  G  F  W  K  *  I  R  S  Q  *  H  T  H  S  Q  C  S  C  T  D  F  E  L  L  N  C  S  S  S  S  R  D  C  S  C  R  W  D  W  C  C  F  S  G  Y  S  T  S  I  S  R  L  T  R  S  C  A  I  S  T  S  H  Q  L  L  S  S  S  I  S  Y  K  *  N  K  L  Y  W  L  *  W  Y  I  S  P  S  H  C  F  A  A  S  C  F  G  S  *  A  I  Y  F  S  S  H  F  N  S  S  S  S  N  N  G  T  K  H  H  F  T  D  K  Y  R  F  *  E  G  Q  A  P  C  T  E  A  *  I  S  R  I  A  G  W  W  K  R  P  S  N  C  K  P   : G  N  F  S  D  L  V  *  S  *  Q  A  V  E  L  C  W  T  F  V  C  F  T  G  F  W  I  R  R  R  H  G  V  A  T  C  N  F  S  V  M  V  P  M  Q  R  C  H  A  L  L  V  *  A  F  C  *  M  L  I  C  *  Y  E  M  H  I  F  N  Q  L  C  F  K  Y  *  K  G  N  E  I  E  L  T  V  H  S  A  C  E  A  F  K  L  F  Q  L  Y  S  R  R  *  N  V  F  Y  W  Y  L  Q  Y  M  H  F  L  N  M  L  I  *  A  P  C  N  K  *  E  K  K  K  S  S  C  I  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20101" stop="20002"/>
                    <exon start="19855" stop="19738"/>
                    <exon start="19588" stop="19072"/>
                    <exon start="17913" stop="17737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQDQYINHIMNETGATVLLRGRGSGYSDEGQGEDVHQPLHLLISSNNSASLERAKLLAENLLDTICAECGASRVSSCKVYGAVPPPLQPLASVQVSGSESEVNNTPTANVAAQILSSSTAAAVPVTAAAGGTGVVSQGTVPQSLGSLDPVPSQPPTSCYPHQLVTSRTSYIGYDGIYPQATALQQVALALRQSTSPVTSTVPPATTGPSITSQTSTGSEKDKRPAQKRKFQELPAGGKGQATVNQVISLTLYEANRLWNSVGPLYVSQDSGYGGGMGLLRAISVLWCRCKDAMPFWFRHFVKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17406" e_stop="17082"/>
            <exon e_start="16682" e_stop="16160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="17406" e_stop="17082" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17081" i_stop="16683" i_length="399"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="16682" e_stop="16160" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17406" stop="17082"/>
              <exon start="16682" stop="16160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17082"/>
              <exon start="16682" stop="16533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTCAAAACTTTTACCTCCTTTTTTCCTGGAATTTCTAAGTTTTCTGGATGGACTCCCCCTCCCCCTTCTGGTTGACAGAATCCACTGCAGGCTACGGAGCTTCTAATGCTTCAGGAACGAATTTCAGAGAAAGGTGATACAGACAAAATTGGTATTCCGACTCCCAGAAAGTTGGTTCAGCCCTTATCCAGTTCAATGCTGCCGCCGCCACCTCCTAGAATGATGCCTCCACCGCCGCCGCCACCAAAGTTTCAATCATCCTCACAGAAAGTGCATGATAACAATATGGTTAACAAAGCACCAAGTAAAATTGTACCAG : ATACATTAGTCCAGCTAATGGAATACGGGGATGACGACGACGACGACGATAATGATGAAGCAATTGACGGACCTTTGAAAAGTAGCTCAAGTGCGGTAGCGACTCCAAAGCCATTCTGGGCTGTTTAATAATATGACCACTGCACATCTCTGAAGATTTTGGCAACAGCTGAATGTGCATTATAAGTTGAATGGTTGTTTTCAATTGACCTGGAAGTGGCTGTGAAATATAAAATATGTACCCTTCCCCACCCCAGCAAAAAGATGTGGGGCCACCAAATGGAGGAAAAGAGGAAAGGAGAGTTCTGTAGTATTGTGCCAATCTGATAATATCAGAGTGTAAGTGATGCTCTATGTAAAATGACTCGTAGAAATTCCGCAACCTTGTATTTCCATTCAGAAGTTGTTTGCTGCTGGCTTGTAGTTTCACTCTGAACTCTTTATGAAACAAAGAAATGCCAGCAGTTTAACCTATTATTTTCTCTCAGTATCAATATGCAGTTATTCGAAACTCAGGCAATTAG</gDNA_template>
            <first_frame> E  K  L  K  T  F  T  S  F  F  P  G  I  S  K  F  S  G  W  T  P  P  P  P  S  G  *  Q  N  P  L  Q  A  T  E  L  L  M  L  Q  E  R  I  S  E  K  G  D  T  D  K  I  G  I  P  T  P  R  K  L  V  Q  P  L  S  S  S  M  L  P  P  P  P  P  R  M  M  P  P  P  P  P  P  P  K  F  Q  S  S  S  Q  K  V  H  D  N  N  M  V  N  K  A  P  S  K  I  V  P   : D  T  L  V  Q  L  M  E  Y  G  D  D  D  D  D  D  D  N  D  E  A  I  D  G  P  L  K  S  S  S  S  A  V  A  T  P  K  P  F  W  A  V  *  *  Y  D  H  C  T  S  L  K  I  L  A  T  A  E  C  A  L  *  V  E  W  L  F  S  I  D  L  E  V  A  V  K  Y  K  I  C  T  L  P  H  P  S  K  K  M  W  G  H  Q  M  E  E  K  R  K  G  E  F  C  S  I  V  P  I  *  *  Y  Q  S  V  S  D  A  L  C  K  M  T  R  R  N  S  A  T  L  Y  F  H  S  E  V  V  C  C  W  L  V  V  S  L  *  T  L  Y  E  T  K  K  C  Q  Q  F  N  L  L  F  S  L  S  I  N  M  Q  L  F  E  T  Q  A  I   </first_frame>
            <second_frame>  K  N  S  K  L  L  P  P  F  F  L  E  F  L  S  F  L  D  G  L  P  L  P  L  L  V  D  R  I  H  C  R  L  R  S  F  *  C  F  R  N  E  F  Q  R  K  V  I  Q  T  K  L  V  F  R  L  P  E  S  W  F  S  P  Y  P  V  Q  C  C  R  R  H  L  L  E  *  C  L  H  R  R  R  H  Q  S  F  N  H  P  H  R  K  C  M  I  T  I  W  L  T  K  H  Q  V  K  L  Y  Q  :  I  H  *  S  S  *  W  N  T  G  M  T  T  T  T  T  I  M  M  K  Q  L  T  D  L  *  K  V  A  Q  V  R  *  R  L  Q  S  H  S  G  L  F  N  N  M  T  T  A  H  L  *  R  F  W  Q  Q  L  N  V  H  Y  K  L  N  G  C  F  Q  L  T  W  K  W  L  *  N  I  K  Y  V  P  F  P  T  P  A  K  R  C  G  A  T  K  W  R  K  R  G  K  E  S  S  V  V  L  C  Q  S  D  N  I  R  V  *  V  M  L  Y  V  K  *  L  V  E  I  P  Q  P  C  I  S  I  Q  K  L  F  A  A  G  L  *  F  H  S  E  L  F  M  K  Q  R  N  A  S  S  L  T  Y  Y  F  L  S  V  S  I  C  S  Y  S  K  L  R  Q  L  </second_frame>
            <third_frame>   K  T  Q  N  F  Y  L  L  F  S  W  N  F  *  V  F  W  M  D  S  P  S  P  F  W  L  T  E  S  T  A  G  Y  G  A  S  N  A  S  G  T  N  F  R  E  R  *  Y  R  Q  N  W  Y  S  D  S  Q  K  V  G  S  A  L  I  Q  F  N  A  A  A  A  T  S  *  N  D  A  S  T  A  A  A  T  K  V  S  I  I  L  T  E  S  A  *  *  Q  Y  G  *  Q  S  T  K  *  N  C  T  R :   Y  I  S  P  A  N  G  I  R  G  *  R  R  R  R  R  *  *  *  S  N  *  R  T  F  E  K  *  L  K  C  G  S  D  S  K  A  I  L  G  C  L  I  I  *  P  L  H  I  S  E  D  F  G  N  S  *  M  C  I  I  S  *  M  V  V  F  N  *  P  G  S  G  C  E  I  *  N  M  Y  P  S  P  P  Q  Q  K  D  V  G  P  P  N  G  G  K  E  E  R  R  V  L  *  Y  C  A  N  L  I  I  S  E  C  K  *  C  S  M  *  N  D  S  *  K  F  R  N  L  V  F  P  F  R  S  C  L  L  L  A  C  S  F  T  L  N  S  L  *  N  K  E  M  P  A  V  *  P  I  I  F  S  Q  Y  Q  Y  A  V  I  R  N  S  G  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17325" stop="17082"/>
                    <exon start="16682" stop="16555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNPLQATELLMLQERISEKGDTDKIGIPTPRKLVQPLSSSMLPPPPPRMMPPPPPPPKFQSSSQKVHDNNMVNKAPSKIVPDTLVQLMEYGDDDDDDDNDEAIDGPLKSSSSAVATPKPFWAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="18258" e_stop="17919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="18258" e_stop="17919" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18258" stop="17919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTATGCTGTGTATATGAATTATGATAGATTCTTCACTTCACCTTCCACTATATAAATGGTATTAATAGAAGGATGAAGTACACCTTGTGTAGCATGATGACTGGCAAAATTGGGATTTATCAGATTCTCTTATTTTTGGGTCTCTTTTAAACTTAGTTTACCATTCATCCTACATCTTAGTTTCTATTAAAATAAGACTTCGTTGTCTCTCATTTTAAATTTTCATCTCATTGCTGTTGTATATGGAGCGTTTGAAATTTCTCAAATTTCTTCCCTTGAGATATTTTTCAGTTATAAAACATATACTAATTTCTGGTCTAACCTTTTCTACTTGATAT</gDNA_template>
            <first_frame> D  Y  A  V  Y  M  N  Y  D  R  F  F  T  S  P  S  T  I  *  M  V  L  I  E  G  *  S  T  P  C  V  A  *  *  L  A  K  L  G  F  I  R  F  S  Y  F  W  V  S  F  K  L  S  L  P  F  I  L  H  L  S  F  Y  *  N  K  T  S  L  S  L  I  L  N  F  H  L  I  A  V  V  Y  G  A  F  E  I  S  Q  I  S  S  L  E  I  F  F  S  Y  K  T  Y  T  N  F  W  S  N  L  F  Y  L  I  </first_frame>
            <second_frame>  T  M  L  C  I  *  I  M  I  D  S  S  L  H  L  P  L  Y  K  W  Y  *  *  K  D  E  V  H  L  V  *  H  D  D  W  Q  N  W  D  L  S  D  S  L  I  F  G  S  L  L  N  L  V  Y  H  S  S  Y  I  L  V  S  I  K  I  R  L  R  C  L  S  F  *  I  F  I  S  L  L  L  Y  M  E  R  L  K  F  L  K  F  L  P  L  R  Y  F  S  V  I  K  H  I  L  I  S  G  L  T  F  S  T  *  Y </second_frame>
            <third_frame>   L  C  C  V  Y  E  L  *  *  I  L  H  F  T  F  H  Y  I  N  G  I  N  R  R  M  K  Y  T  L  C  S  M  M  T  G  K  I  G  I  Y  Q  I  L  L  F  L  G  L  F  *  T  *  F  T  I  H  P  T  S  *  F  L  L  K  *  D  F  V  V  S  H  F  K  F  S  S  H  C  C  C  I  W  S  V  *  N  F  S  N  F  F  P  *  D  I  F  Q  L  *  N  I  Y  *  F  L  V  *  P  F  L  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0025N15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28535" PGL_stop="30694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28535" e_stop="28727"/>
            <exon e_start="29768" e_stop="29919"/>
            <exon e_start="30000" e_stop="30057"/>
            <exon e_start="30163" e_stop="30694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.979"/>
          <exon-intron don_prob="0.714" acc_prob="0.213" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="28535" e_stop="28727" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28728" i_stop="29767" i_length="1040"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29768" e_stop="29919" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.714" acc_prob="0.213">
            <gDNA_intron_boundary i_start="29920" i_stop="29999" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30000" e_stop="30057" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30058" i_stop="30162" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="30163" e_stop="30694" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28535" stop="28727"/>
              <exon start="29768" stop="29919"/>
              <exon start="30000" stop="30057"/>
              <exon start="30163" stop="30572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29768" stop="29919"/>
              <exon start="30000" stop="30057"/>
              <exon start="30163" stop="30694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAGCTTTGTGCTCCGCCAGAGTGCTGTACATTCAGCTCCCCTTCAATATTCATCCATTTTAGTTCGCTTTCAGCCTTTTGAGAGATCTGAAAATTCAATGAGGGCTCTTCGTTTGAGCGATTTCGAGTATCAAACATCTTCTGATTGAGTTCATATCGAATTATGAAGCTTTGAATTTGATTACCTAGT : GAAGATATGGGCACAAGCACATTACCAGATGCATTATTTGGATCTGTTCAACAGCACACTATTATTTCTTCACGCAGACACCATGACCCTATTCGATTTGTTGCTGTTAAGTCGCATTCCACGATCTATAGAAGGCGTTCTGTTGGGAAAAG : AGTTCTGTTCGCGGATGCCTGCCTCTGCAAACCAAGACATGTTGTTTTCTCGAGCATG : GATTATTCAACTGAAGCTCTCACAGATGATGAGGATGGTGATTCATTAGGGAGGAGTAAAGTTGTAGGGATTGATGATGATGAACTGTTGGCAACTAGGAAATCTCTATCTGATGTTCAAGCCAGAAATAAAACCATTGAAAAGGAAAGAGATCAATTGCTTGAAAAGGTAGCTCGGTCTGAGGCTAAACAGAAGGAGTATTTGTCCACCGTAATGCATGATAAGGATTTGGCCATATCAGAACTAGAGTCAGCCAAAGCTCTATTTAACCGTAAGCTAGAAGAGTCTTTGGAGGAGAAATTTAACTTGGAATCTAAGTTGGTCCTGGCAAAACAAGATGCTGTTGAACTTGCGGTTCAAGTTGAGAAGCTTGCTGAGATTGCTTTTCAGCAGGCAACTTCTCACATACTCGAAGATGCACAATTACGAGTTTCAGCTGCTGAAGCTTCTGCAGCAGAGGCTGCTTTTCAAATTGAAGAACAAATAAGGACTGCCTCTGACGGGGCCATAACCTATGTTCTACAACAGTCTA</gDNA_template>
            <first_frame> R  T  A  L  C  S  A  R  V  L  Y  I  Q  L  P  F  N  I  H  P  F  *  F  A  F  S  L  L  R  D  L  K  I  Q  *  G  L  F  V  *  A  I  S  S  I  K  H  L  L  I  E  F  I  S  N  Y  E  A  L  N  L  I  T  *   : *  R  Y  G  H  K  H  I  T  R  C  I  I  W  I  C  S  T  A  H  Y  Y  F  F  T  Q  T  P  *  P  Y  S  I  C  C  C  *  V  A  F  H  D  L  *  K  A  F  C  W  E  K  :  S  S  V  R  G  C  L  P  L  Q  T  K  T  C  C  F  L  E  H   : G  L  F  N  *  S  S  H  R  *  *  G  W  *  F  I  R  E  E  *  S  C  R  D  *  *  *  *  T  V  G  N  *  E  I  S  I  *  C  S  S  Q  K  *  N  H  *  K  G  K  R  S  I  A  *  K  G  S  S  V  *  G  *  T  E  G  V  F  V  H  R  N  A  *  *  G  F  G  H  I  R  T  R  V  S  Q  S  S  I  *  P  *  A  R  R  V  F  G  G  E  I  *  L  G  I  *  V  G  P  G  K  T  R  C  C  *  T  C  G  S  S  *  E  A  C  *  D  C  F  S  A  G  N  F  S  H  T  R  R  C  T  I  T  S  F  S  C  *  S  F  C  S  R  G  C  F  S  N  *  R  T  N  K  D  C  L  *  R  G  H  N  L  C  S  T  T  V   </first_frame>
            <second_frame>  E  Q  L  C  A  P  P  E  C  C  T  F  S  S  P  S  I  F  I  H  F  S  S  L  S  A  F  *  E  I  *  K  F  N  E  G  S  S  F  E  R  F  R  V  S  N  I  F  *  L  S  S  Y  R  I  M  K  L  *  I  *  L  P  S  :  E  D  M  G  T  S  T  L  P  D  A  L  F  G  S  V  Q  Q  H  T  I  I  S  S  R  R  H  H  D  P  I  R  F  V  A  V  K  S  H  S  T  I  Y  R  R  R  S  V  G  K  R :   V  L  F  A  D  A  C  L  C  K  P  R  H  V  V  F  S  S  M  :  D  Y  S  T  E  A  L  T  D  D  E  D  G  D  S  L  G  R  S  K  V  V  G  I  D  D  D  E  L  L  A  T  R  K  S  L  S  D  V  Q  A  R  N  K  T  I  E  K  E  R  D  Q  L  L  E  K  V  A  R  S  E  A  K  Q  K  E  Y  L  S  T  V  M  H  D  K  D  L  A  I  S  E  L  E  S  A  K  A  L  F  N  R  K  L  E  E  S  L  E  E  K  F  N  L  E  S  K  L  V  L  A  K  Q  D  A  V  E  L  A  V  Q  V  E  K  L  A  E  I  A  F  Q  Q  A  T  S  H  I  L  E  D  A  Q  L  R  V  S  A  A  E  A  S  A  A  E  A  A  F  Q  I  E  E  Q  I  R  T  A  S  D  G  A  I  T  Y  V  L  Q  Q  S  </second_frame>
            <third_frame>   N  S  F  V  L  R  Q  S  A  V  H  S  A  P  L  Q  Y  S  S  I  L  V  R  F  Q  P  F  E  R  S  E  N  S  M  R  A  L  R  L  S  D  F  E  Y  Q  T  S  S  D  *  V  H  I  E  L  *  S  F  E  F  D  Y  L  V :   K  I  W  A  Q  A  H  Y  Q  M  H  Y  L  D  L  F  N  S  T  L  L  F  L  H  A  D  T  M  T  L  F  D  L  L  L  L  S  R  I  P  R  S  I  E  G  V  L  L  G  K   : E  F  C  S  R  M  P  A  S  A  N  Q  D  M  L  F  S  R  A  W :   I  I  Q  L  K  L  S  Q  M  M  R  M  V  I  H  *  G  G  V  K  L  *  G  L  M  M  M  N  C  W  Q  L  G  N  L  Y  L  M  F  K  P  E  I  K  P  L  K  R  K  E  I  N  C  L  K  R  *  L  G  L  R  L  N  R  R  S  I  C  P  P  *  C  M  I  R  I  W  P  Y  Q  N  *  S  Q  P  K  L  Y  L  T  V  S  *  K  S  L  W  R  R  N  L  T  W  N  L  S  W  S  W  Q  N  K  M  L  L  N  L  R  F  K  L  R  S  L  L  R  L  L  F  S  R  Q  L  L  T  Y  S  K  M  H  N  Y  E  F  Q  L  L  K  L  L  Q  Q  R  L  L  F  K  L  K  N  K  *  G  L  P  L  T  G  P  *  P  M  F  Y  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28719" stop="28727"/>
                    <exon start="29768" stop="29919"/>
                    <exon start="30000" stop="30057"/>
                    <exon start="30163" stop="30693"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSEDMGTSTLPDALFGSVQQHTIISSRRHHDPIRFVAVKSHSTIYRRRSVGKRVLFADACLCKPRHVVFSSMDYSTEALTDDEDGDSLGRSKVVGIDDDELLATRKSLSDVQARNKTIEKERDQLLEKVARSEAKQKEYLSTVMHDKDLAISELESAKALFNRKLEESLEEKFNLESKLVLAKQDAVELAVQVEKLAEIAFQQATSHILEDAQLRVSAAEASAAEAAFQIEEQIRTASDGAITYVLQQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31616" PGL_stop="32199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31616" e_stop="31680"/>
            <exon e_start="31767" e_stop="32199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31616" e_stop="31680" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="31681" i_stop="31766" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="31767" e_stop="32199" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31616" stop="31680"/>
              <exon start="31767" stop="32199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAACGGAAGACAGTTAAATGGCAAAGAACTCCAGAAGAAACAAAATTAGGTGCAGCTATTCAT : AATCAGGGACGGGTACTGGACGAGAGATTGTGGTCAGTAATACCAGCTTTCATTTTGATCTTTTTTCTGTATAAGATAAAAGTAATTTTATTAACAATAGCAGTACAAGGGGGTACTGCAAAGTACAAAAAGAAGCTGGACAGTATACAAATATTATACAATAGCGAACTCAAACAAGTCCAGAAACTCAGTTGTGGTGAATACAGGATTTCCACTATGCCAATACTCTCTGTAAACACTTGTATCTTACATAGGAAATCATCTCTTTTTTCCCTAGAAACATCTTCTATTTCTCTCTCGTGATACTTCCCAAATGATGTATAAAGTTATCAATTTCCATATCTATTATCTTAAAATAAAATCCTTTGAGAATATTTTACTGTCTTGGAAAGTTATATGGAACCACGTTTATTCTTTGCAAAAAAACTTAAAC</gDNA_template>
            <first_frame> F  N  G  R  Q  L  N  G  K  E  L  Q  K  K  Q  N  *  V  Q  L  F  I :   I  R  D  G  Y  W  T  R  D  C  G  Q  *  Y  Q  L  S  F  *  S  F  F  C  I  R  *  K  *  F  Y  *  Q  *  Q  Y  K  G  V  L  Q  S  T  K  R  S  W  T  V  Y  K  Y  Y  T  I  A  N  S  N  K  S  R  N  S  V  V  V  N  T  G  F  P  L  C  Q  Y  S  L  *  T  L  V  S  Y  I  G  N  H  L  F  F  P  *  K  H  L  L  F  L  S  R  D  T  S  Q  M  M  Y  K  V  I  N  F  H  I  Y  Y  L  K  I  K  S  F  E  N  I  L  L  S  W  K  V  I  W  N  H  V  Y  S  L  Q  K  N  L  N </first_frame>
            <second_frame>  S  T  E  D  S  *  M  A  K  N  S  R  R  N  K  I  R  C  S  Y  S   : *  S  G  T  G  T  G  R  E  I  V  V  S  N  T  S  F  H  F  D  L  F  S  V  *  D  K  S  N  F  I  N  N  S  S  T  R  G  Y  C  K  V  Q  K  E  A  G  Q  Y  T  N  I  I  Q  *  R  T  Q  T  S  P  E  T  Q  L  W  *  I  Q  D  F  H  Y  A  N  T  L  C  K  H  L  Y  L  T  *  E  I  I  S  F  F  P  R  N  I  F  Y  F  S  L  V  I  L  P  K  *  C  I  K  L  S  I  S  I  S  I  I  L  K  *  N  P  L  R  I  F  Y  C  L  G  K  L  Y  G  T  T  F  I  L  C  K  K  T  *   </second_frame>
            <third_frame>   Q  R  K  T  V  K  W  Q  R  T  P  E  E  T  K  L  G  A  A  I  H  :  N  Q  G  R  V  L  D  E  R  L  W  S  V  I  P  A  F  I  L  I  F  F  L  Y  K  I  K  V  I  L  L  T  I  A  V  Q  G  G  T  A  K  Y  K  K  K  L  D  S  I  Q  I  L  Y  N  S  E  L  K  Q  V  Q  K  L  S  C  G  E  Y  R  I  S  T  M  P  I  L  S  V  N  T  C  I  L  H  R  K  S  S  L  F  S  L  E  T  S  S  I  S  L  S  *  Y  F  P  N  D  V  *  S  Y  Q  F  P  Y  L  L  S  *  N  K  I  L  *  E  Y  F  T  V  L  E  S  Y  M  E  P  R  L  F  F  A  K  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31618" stop="31680"/>
                    <exon start="31767" stop="32069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRKTVKWQRTPEETKLGAAIHNQGRVLDERLWSVIPAFILIFFLYKIKVILLTIAVQGGTAKYKKKLDSIQILYNSELKQVQKLSCGEYRISTMPILSVNTCILHRKSSLFSLETSSISLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33243" PGL_stop="42274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33244" e_stop="33298"/>
            <exon e_start="33675" e_stop="33719"/>
            <exon e_start="34697" e_stop="34802"/>
            <exon e_start="36199" e_stop="36325"/>
            <exon e_start="37021" e_stop="37034"/>
            <exon e_start="37537" e_stop="37564"/>
            <exon e_start="37842" e_stop="37976"/>
            <exon e_start="40837" e_stop="40905"/>
            <exon e_start="41710" e_stop="42274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.257" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.575" acc_prob="0.851" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33244" e_stop="33298" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.963">
            <gDNA_intron_boundary i_start="33299" i_stop="33674" i_length="376"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33675" e_stop="33719" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.541">
            <gDNA_intron_boundary i_start="33720" i_stop="34696" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34697" e_stop="34802" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.965">
            <gDNA_intron_boundary i_start="34803" i_stop="36198" i_length="1396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36199" e_stop="36325" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.257" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36326" i_stop="37020" i_length="695"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37021" e_stop="37034" e_length="14"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37035" i_stop="37536" i_length="502"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37537" e_stop="37564" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="37565" i_stop="37841" i_length="277"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="37842" e_stop="37976" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.760" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37977" i_stop="40836" i_length="2860"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40837" e_stop="40905" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.575" acc_prob="0.851">
            <gDNA_intron_boundary i_start="40906" i_stop="41709" i_length="804"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41710" e_stop="42274" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33244" stop="33298"/>
              <exon start="33675" stop="33719"/>
              <exon start="34697" stop="34802"/>
              <exon start="36199" stop="36265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33687" stop="33719"/>
              <exon start="34697" stop="34802"/>
              <exon start="36199" stop="36325"/>
              <exon start="37021" stop="37034"/>
              <exon start="37537" stop="37564"/>
              <exon start="37842" stop="37976"/>
              <exon start="40837" stop="40905"/>
              <exon start="41710" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41710" stop="42274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTG : GCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAG : AGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTG : GTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAG : GGGCTTCTCAGGAG : CTCTTCAGCATTCGATGTCACAACAAAG : GGTATACTGCATTCTGCTTTGCATAACCAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAG : GGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACG : CCTGTAATATTTTACGATCATTTCTATGAATTTGGAATCCGTGATGTCATAAATGAGTTAATTGAGGCACGTAGACGAGCTGGAATCCATTGTCGTAGCCCGTTAAAGATATATCATGCAAACGGTGATGGTTACGTTGCACAGATTGGAGATACTCTTGTGATGAAACTTGGTCATTTGGACTGGAATCCTTCCAAAGAAGTTCATTTGGATGGTACCTGGCAAAAGTTTGTCGATAAAGGACCAGAATATCAAATATGGCTCAGGCAATAATACTACATATATTATTCTGGACTTGCATTGTTCTTATTGGTATTCTGTCTATATATATGCTTTCATGTTGTAACTATAATACATCATACCTCACATCAGAGATTTTGAATTCCTGCATCAGTAAATGAAAAGAATAATAAAAAAGAACTGATGTTGGGGTGGGCTTTTCATTTGACAATGGCTATTTATGATGTTATTGGTTTGTATTCGTGCATTATTATATCATTTGTTATTTTGTTGCATAAACAATCTATACATTAATATCATTAACTAATAAAGCTGTGTTTTATCA</gDNA_template>
            <first_frame> F  V  G  R  A  *  R  L  Y  R  R  D  A  *  P  R  S  S   : G  L  R  R  C  R  F  E  P  S  M  C  S  Q  T   : E  S  E  W  C  L  E  H  F  W  R  Q  A  C  M  G  T  *  S  N  C  V  *  *  P  K  F  S  R  P  W  K  S  F  K  W :   *  Y  I  S  C  R  T  K  Y  *  S  F  P  G  I  C  T  T  R  Y  K  K  V  A  K  L  A  P  K  *  C  W  F  *  W  V  A  P  *  L  C  *  :  G  L  L  R  S :   S  S  A  F  D  V  T  T  K  :  G  I  L  H  S  A  L  H  N  Q  Y  W  R  L  I  D  P  Q  G  K  P  T  G  V  M  G  W  W  P  S  R  A  V  T  F  L  E  N  H  D  T  G  S  T  Q  :  G  H  W  P  F  P  R  D  K  L  T  Q  G  Y  A  Y  I  L  T  H  P  G  T  :  P  V  I  F  Y  D  H  F  Y  E  F  G  I  R  D  V  I  N  E  L  I  E  A  R  R  R  A  G  I  H  C  R  S  P  L  K  I  Y  H  A  N  G  D  G  Y  V  A  Q  I  G  D  T  L  V  M  K  L  G  H  L  D  W  N  P  S  K  E  V  H  L  D  G  T  W  Q  K  F  V  D  K  G  P  E  Y  Q  I  W  L  R  Q  *  Y  Y  I  Y  Y  S  G  L  A  L  F  L  L  V  F  C  L  Y  I  C  F  H  V  V  T  I  I  H  H  T  S  H  Q  R  F  *  I  P  A  S  V  N  E  K  N  N  K  K  E  L  M  L  G  W  A  F  H  L  T  M  A  I  Y  D  V  I  G  L  Y  S  C  I  I  I  S  F  V  I  L  L  H  K  Q  S  I  H  *  Y  H  *  L  I  K  L  C  F  I  </first_frame>
            <second_frame>  S  L  E  E  L  K  G  C  I  E  E  M  H  N  Q  D  L  L  :  A  L  G  D  V  V  L  N  H  R  C  A  H  K  Q  :  S  P  N  G  V  W  N  I  F  G  G  K  L  A  W  G  P  E  A  I  V  C  D  D  P  N  F  Q  G  R  G  N  P  S  S   : G  D  I  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  Q  D  I  K  K  W  L  N  W  L  R  N  D  V  G  F  D  G  W  R  L  D  F  V  R :   G  F  S  G   : A  L  Q  H  S  M  S  Q  Q  R :   V  Y  C  I  L  L  C  I  T  N  I  G  G  *  L  I  L  K  A  S  Q  P  E  *  W  D  G  G  P  H  V  L  S  H  F  W  R  I  M  I  L  D  P  H  R :   A  T  G  H  F  L  G  T  S  L  L  K  D  M  H  I  F  *  P  T  L  E  R :   L  *  Y  F  T  I  I  S  M  N  L  E  S  V  M  S  *  M  S  *  L  R  H  V  D  E  L  E  S  I  V  V  A  R  *  R  Y  I  M  Q  T  V  M  V  T  L  H  R  L  E  I  L  L  *  *  N  L  V  I  W  T  G  I  L  P  K  K  F  I  W  M  V  P  G  K  S  L  S  I  K  D  Q  N  I  K  Y  G  S  G  N  N  T  T  Y  I  I  L  D  L  H  C  S  Y  W  Y  S  V  Y  I  Y  A  F  M  L  *  L  *  Y  I  I  P  H  I  R  D  F  E  F  L  H  Q  *  M  K  R  I  I  K  K  N  *  C  W  G  G  L  F  I  *  Q  W  L  F  M  M  L  L  V  C  I  R  A  L  L  Y  H  L  L  F  C  C  I  N  N  L  Y  I  N  I  I  N  *  *  S  C  V  L  S </second_frame>
            <third_frame>   R  W  K  S  L  K  A  V  *  K  R  C  I  T  K  I  F  W :   P  *  E  M  S  F  *  T  I  D  V  L  T  N  R :   V  R  M  V  F  G  T  F  L  E  A  S  L  H  G  D  L  K  Q  L  C  V  M  T  Q  I  F  K  A  V  E  I  L  Q  V  :  V  I  Y  F  M  P  H  Q  I  L  I  I  P  R  N  L  Y  D  K  I  *  K  S  G  *  I  G  S  E  M  M  L  V  L  M  G  G  A  L  T  L  L   : G  A  S  Q  E  :  L  F  S  I  R  C  H  N  K   : G  Y  T  A  F  C  F  A  *  P  I  L  E  V  N  *  S  S  R  Q  A  N  R  S  D  G  M  V  A  L  T  C  C  H  I  F  G  E  S  *  Y  W  I  H  T   : G  P  L  A  I  S  S  G  Q  A  Y  S  R  I  C  I  Y  F  N  P  P  W  N   : A  C  N  I  L  R  S  F  L  *  I  W  N  P  *  C  H  K  *  V  N  *  G  T  *  T  S  W  N  P  L  S  *  P  V  K  D  I  S  C  K  R  *  W  L  R  C  T  D  W  R  Y  S  C  D  E  T  W  S  F  G  L  E  S  F  Q  R  S  S  F  G  W  Y  L  A  K  V  C  R  *  R  T  R  I  S  N  M  A  Q  A  I  I  L  H  I  L  F  W  T  C  I  V  L  I  G  I  L  S  I  Y  M  L  S  C  C  N  Y  N  T  S  Y  L  T  S  E  I  L  N  S  C  I  S  K  *  K  E  *  *  K  R  T  D  V  G  V  G  F  S  F  D  N  G  Y  L  *  C  Y  W  F  V  F  V  H  Y  Y  I  I  C  Y  F  V  A  *  T  I  Y  T  L  I  S  L  T  N  K  A  V  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37021" stop="37034"/>
                    <exon start="37537" stop="37564"/>
                    <exon start="37842" stop="37976"/>
                    <exon start="40837" stop="40905"/>
                    <exon start="41710" stop="41982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLRSSSAFDVTTKGILHSALHNQYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLTQGYAYILTHPGTPVIFYDHFYEFGIRDVINELIEARRRAGIHCRSPLKIYHANGDGYVAQIGDTLVMKLGHLDWNPSKEVHLDGTWQKFVDKGPEYQIWLRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33243" e_stop="33298"/>
            <exon e_start="33675" e_stop="33719"/>
            <exon e_start="34697" e_stop="34802"/>
            <exon e_start="36199" e_stop="36325"/>
            <exon e_start="37021" e_stop="37136"/>
            <exon e_start="37488" e_stop="37564"/>
            <exon e_start="37842" e_stop="37976"/>
            <exon e_start="40837" e_stop="40905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.257" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33243" e_stop="33298" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.963">
            <gDNA_intron_boundary i_start="33299" i_stop="33674" i_length="376"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33675" e_stop="33719" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.541">
            <gDNA_intron_boundary i_start="33720" i_stop="34696" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34697" e_stop="34802" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.965">
            <gDNA_intron_boundary i_start="34803" i_stop="36198" i_length="1396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36199" e_stop="36325" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.257" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36326" i_stop="37020" i_length="695"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37021" e_stop="37136" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="37137" i_stop="37487" i_length="351"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37488" e_stop="37564" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="37565" i_stop="37841" i_length="277"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37842" e_stop="37976" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.760" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37977" i_stop="40836" i_length="2860"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40837" e_stop="40905" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33243" stop="33298"/>
              <exon start="33675" stop="33719"/>
              <exon start="34697" stop="34802"/>
              <exon start="36199" stop="36325"/>
              <exon start="37021" stop="37136"/>
              <exon start="37488" stop="37564"/>
              <exon start="37842" stop="37976"/>
              <exon start="40837" stop="40905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33244" stop="33298"/>
              <exon start="33675" stop="33719"/>
              <exon start="34697" stop="34802"/>
              <exon start="36199" stop="36265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCGTTGGAAGAGCTTAAAGGCTGTATAGAAGAGATGCATAACCAAGATCTTCTG : GCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAG : AGTCCGAATGGTGTTTGGAACATTTTTGGAGGCAAGCTTGCATGGGGACCTGAAGCAATTGTGTGTGATGACCCAAATTTTCAAGGCCGTGGAAATCCTTCAAGTG : GTGATATATTTCATGCCGCACCAAATATTGATCATTCCCAGGAATTTGTACGACAAGATATAAAAAAGTGGCTAAATTGGCTCCGAAATGATGTTGGTTTTGATGGGTGGCGCCTTGACTTTGTTAG : GGGCTTCTCAGGAGCATATGTGAAAGAATATATAGAAGCATCAAATCCAGCATTTTCTATTGGCGAGTATTGGGATAGTCTCGCTTATGAAGGTGGAAATTTGTGTTACAACCAAG : ATGCCCATCGCCAACGCATAATTAACTGGATCAATGCTACTGGTGGGAGCTCTTCAGCATTCGATGTCACAACAAAG : GGTATACTGCATTCTGCTTTGCATAACCAATATTGGAGGTTAATTGATCCTCAAGGCAAGCCAACCGGAGTGATGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAATCATGATACTGGATCCACACAG : GGCCACTGGCCATTTCCTCGGGACAAGCTTACTCAAGGATATGCATATATTTTAACCCACCCTGGAACG</gDNA_template>
            <first_frame> V  R  W  K  S  L  K  A  V  *  K  R  C  I  T  K  I  F  W :   P  *  E  M  S  F  *  T  I  D  V  L  T  N  R :   V  R  M  V  F  G  T  F  L  E  A  S  L  H  G  D  L  K  Q  L  C  V  M  T  Q  I  F  K  A  V  E  I  L  Q  V  :  V  I  Y  F  M  P  H  Q  I  L  I  I  P  R  N  L  Y  D  K  I  *  K  S  G  *  I  G  S  E  M  M  L  V  L  M  G  G  A  L  T  L  L   : G  A  S  Q  E  H  M  *  K  N  I  *  K  H  Q  I  Q  H  F  L  L  A  S  I  G  I  V  S  L  M  K  V  E  I  C  V  T  T  K  :  M  P  I  A  N  A  *  L  T  G  S  M  L  L  V  G  A  L  Q  H  S  M  S  Q  Q  R :   V  Y  C  I  L  L  C  I  T  N  I  G  G  *  L  I  L  K  A  S  Q  P  E  *  W  D  G  G  P  H  V  L  S  H  F  W  R  I  M  I  L  D  P  H  R :   A  T  G  H  F  L  G  T  S  L  L  K  D  M  H  I  F  *  P  T  L  E   </first_frame>
            <second_frame>  F  V  G  R  A  *  R  L  Y  R  R  D  A  *  P  R  S  S   : G  L  R  R  C  R  F  E  P  S  M  C  S  Q  T   : E  S  E  W  C  L  E  H  F  W  R  Q  A  C  M  G  T  *  S  N  C  V  *  *  P  K  F  S  R  P  W  K  S  F  K  W :   *  Y  I  S  C  R  T  K  Y  *  S  F  P  G  I  C  T  T  R  Y  K  K  V  A  K  L  A  P  K  *  C  W  F  *  W  V  A  P  *  L  C  *  :  G  L  L  R  S  I  C  E  R  I  Y  R  S  I  K  S  S  I  F  Y  W  R  V  L  G  *  S  R  L  *  R  W  K  F  V  L  Q  P  R :   C  P  S  P  T  H  N  *  L  D  Q  C  Y  W  W  E  L  F  S  I  R  C  H  N  K   : G  Y  T  A  F  C  F  A  *  P  I  L  E  V  N  *  S  S  R  Q  A  N  R  S  D  G  M  V  A  L  T  C  C  H  I  F  G  E  S  *  Y  W  I  H  T   : G  P  L  A  I  S  S  G  Q  A  Y  S  R  I  C  I  Y  F  N  P  P  W  N  </second_frame>
            <third_frame>   S  L  E  E  L  K  G  C  I  E  E  M  H  N  Q  D  L  L  :  A  L  G  D  V  V  L  N  H  R  C  A  H  K  Q  :  S  P  N  G  V  W  N  I  F  G  G  K  L  A  W  G  P  E  A  I  V  C  D  D  P  N  F  Q  G  R  G  N  P  S  S   : G  D  I  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  Q  D  I  K  K  W  L  N  W  L  R  N  D  V  G  F  D  G  W  R  L  D  F  V  R :   G  F  S  G  A  Y  V  K  E  Y  I  E  A  S  N  P  A  F  S  I  G  E  Y  W  D  S  L  A  Y  E  G  G  N  L  C  Y  N  Q   : D  A  H  R  Q  R  I  I  N  W  I  N  A  T  G  G  S  S  S  A  F  D  V  T  T  K  :  G  I  L  H  S  A  L  H  N  Q  Y  W  R  L  I  D  P  Q  G  K  P  T  G  V  M  G  W  W  P  S  R  A  V  T  F  L  E  N  H  D  T  G  S  T  Q  :  G  H  W  P  F  P  R  D  K  L  T  Q  G  Y  A  Y  I  L  T  H  P  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33245" stop="33298"/>
                    <exon start="33675" stop="33719"/>
                    <exon start="34697" stop="34802"/>
                    <exon start="36199" stop="36325"/>
                    <exon start="37021" stop="37136"/>
                    <exon start="37488" stop="37564"/>
                    <exon start="37842" stop="37976"/>
                    <exon start="40837" stop="40905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLEELKGCIEEMHNQDLLALGDVVLNHRCAHKQSPNGVWNIFGGKLAWGPEAIVCDDPNFQGRGNPSSGDIFHAAPNIDHSQEFVRQDIKKWLNWLRNDVGFDGWRLDFVRGFSGAYVKEYIEASNPAFSIGEYWDSLAYEGGNLCYNQDAHRQRIINWINATGGSSSAFDVTTKGILHSALHNQYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLTQGYAYILTHPGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43842" PGL_stop="44577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43842" e_stop="44577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="43842" e_stop="44577" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43842" stop="44577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43843" stop="44389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATCATGAACACATCAGATTTACTTTGGACAAGCATGGGGAATTCAACAATGCAAAAAATCATTTTCAACATGTTGGTTCACAACAATAAATCTGTGAAATCAGCAGATTGGCTTATTTGCAACTCAACATATGATCTTGAACCAGGAGCCTTCAAACTAGCACCAGAGATAGTGCCTATAGGTCCACTTTTTTCAAACAACTCACTCGAATCAAACGCGTTGTCACTTGAAGCAGAAGCCCTTATATCTTCTAGAGAATCTCCTAATTCACTAGCCGGATCGTTCTGGCCCGAGGACTCAACTTGTCTAGACTGGCTTGATCAACAACCATTATGCTCAGTTGTGTATGTAGCCTTTGGGAGCTTCACAATATTCAATGAAACTCAGTTTCAAGAATTGGCATTAGGGCTTGAACTATCAAACAAACCATTCTTATGGGTTGTGAGAACTACTACTCTAGATACTAAAAGTGACATTTTCTTGAAAAAATTTGAAGAAAAAATAGGGAGGCAAAAGGGGAAAATAGTGAGTTGGGCACCACAACAAAAGGTGTTGAGTCATTCTAGTATAGGTTGTTTTGTTAGTCACTGTGGTTGGAATTCGACGATAGAAGCAATGAGTAACGGGGTTCCAATCTTGTGTTGGCCTTATTTTGCTGACCAATTTATGAACCAAAGTTATGTTTGTGATATATGGAAAGTTGGATTAGGACTAAAGAAAGGGGATAATGGG</gDNA_template>
            <first_frame> A  N  H  E  H  I  R  F  T  L  D  K  H  G  E  F  N  N  A  K  N  H  F  Q  H  V  G  S  Q  Q  *  I  C  E  I  S  R  L  A  Y  L  Q  L  N  I  *  S  *  T  R  S  L  Q  T  S  T  R  D  S  A  Y  R  S  T  F  F  K  Q  L  T  R  I  K  R  V  V  T  *  S  R  S  P  Y  I  F  *  R  I  S  *  F  T  S  R  I  V  L  A  R  G  L  N  L  S  R  L  A  *  S  T  T  I  M  L  S  C  V  C  S  L  W  E  L  H  N  I  Q  *  N  S  V  S  R  I  G  I  R  A  *  T  I  K  Q  T  I  L  M  G  C  E  N  Y  Y  S  R  Y  *  K  *  H  F  L  E  K  I  *  R  K  N  R  E  A  K  G  E  N  S  E  L  G  T  T  T  K  G  V  E  S  F  *  Y  R  L  F  C  *  S  L  W  L  E  F  D  D  R  S  N  E  *  R  G  S  N  L  V  L  A  L  F  C  *  P  I  Y  E  P  K  L  C  L  *  Y  M  E  S  W  I  R  T  K  E  R  G  *  W  </first_frame>
            <second_frame>  P  I  M  N  T  S  D  L  L  W  T  S  M  G  N  S  T  M  Q  K  I  I  F  N  M  L  V  H  N  N  K  S  V  K  S  A  D  W  L  I  C  N  S  T  Y  D  L  E  P  G  A  F  K  L  A  P  E  I  V  P  I  G  P  L  F  S  N  N  S  L  E  S  N  A  L  S  L  E  A  E  A  L  I  S  S  R  E  S  P  N  S  L  A  G  S  F  W  P  E  D  S  T  C  L  D  W  L  D  Q  Q  P  L  C  S  V  V  Y  V  A  F  G  S  F  T  I  F  N  E  T  Q  F  Q  E  L  A  L  G  L  E  L  S  N  K  P  F  L  W  V  V  R  T  T  T  L  D  T  K  S  D  I  F  L  K  K  F  E  E  K  I  G  R  Q  K  G  K  I  V  S  W  A  P  Q  Q  K  V  L  S  H  S  S  I  G  C  F  V  S  H  C  G  W  N  S  T  I  E  A  M  S  N  G  V  P  I  L  C  W  P  Y  F  A  D  Q  F  M  N  Q  S  Y  V  C  D  I  W  K  V  G  L  G  L  K  K  G  D  N  G </second_frame>
            <third_frame>   Q  S  *  T  H  Q  I  Y  F  G  Q  A  W  G  I  Q  Q  C  K  K  S  F  S  T  C  W  F  T  T  I  N  L  *  N  Q  Q  I  G  L  F  A  T  Q  H  M  I  L  N  Q  E  P  S  N  *  H  Q  R  *  C  L  *  V  H  F  F  Q  T  T  H  S  N  Q  T  R  C  H  L  K  Q  K  P  L  Y  L  L  E  N  L  L  I  H  *  P  D  R  S  G  P  R  T  Q  L  V  *  T  G  L  I  N  N  H  Y  A  Q  L  C  M  *  P  L  G  A  S  Q  Y  S  M  K  L  S  F  K  N  W  H  *  G  L  N  Y  Q  T  N  H  S  Y  G  L  *  E  L  L  L  *  I  L  K  V  T  F  S  *  K  N  L  K  K  K  *  G  G  K  R  G  K  *  *  V  G  H  H  N  K  R  C  *  V  I  L  V  *  V  V  L  L  V  T  V  V  G  I  R  R  *  K  Q  *  V  T  G  F  Q  S  C  V  G  L  I  L  L  T  N  L  *  T  K  V  M  F  V  I  Y  G  K  L  D  *  D  *  R  K  G  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43843" stop="44577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIMNTSDLLWTSMGNSTMQKIIFNMLVHNNKSVKSADWLICNSTYDLEPGAFKLAPEIVPIGPLFSNNSLESNALSLEAEALISSRESPNSLAGSFWPEDSTCLDWLDQQPLCSVVYVAFGSFTIFNETQFQELALGLELSNKPFLWVVRTTTLDTKSDIFLKKFEEKIGRQKGKIVSWAPQQKVLSHSSIGCFVSHCGWNSTIEAMSNGVPILCWPYFADQFMNQSYVCDIWKVGLGLKKGDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50013" PGL_stop="49565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50013" e_stop="49565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="50013" e_stop="49565" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50013" stop="49565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATGGGTTCACAGCCAAAAAAATCGAGTAGCTTGCGGCTAAGGAGATCGAGAAGAAATTCTTCCGTGGAAAAACGGTCGAAAAATGGAGTAGTTAACAACAGTAGCAATGCCGCCGGCGATGATAATTCGATTTCAATTTCGGAAAAATTGGAAGCTCTGAAGCAACTTCTCCCAGTCAACAATGGCGAACTAAAAGCAGATCAGTTATTTGAAGAAACAGCTGATTATATTGTTCTTCTCAGAACTCAAATCTTCGTTTTACAGAAACTGCTCGATTTTTGTGACGATGCATCTGGTCAGTCCCAACATATTAATGCTGTATAGTTAGTAGTAATTATTTCCTAATCGAATTTTTATTCTTAGTAGTTAGGTTCTCAATTGAAGGTCAGTAGTTACTAGTAATTTATAGTGACAAAAATCTGAAATACATTCTAATTTTTTTTTTT</gDNA_template>
            <first_frame> Q  M  G  S  Q  P  K  K  S  S  S  L  R  L  R  R  S  R  R  N  S  S  V  E  K  R  S  K  N  G  V  V  N  N  S  S  N  A  A  G  D  D  N  S  I  S  I  S  E  K  L  E  A  L  K  Q  L  L  P  V  N  N  G  E  L  K  A  D  Q  L  F  E  E  T  A  D  Y  I  V  L  L  R  T  Q  I  F  V  L  Q  K  L  L  D  F  C  D  D  A  S  G  Q  S  Q  H  I  N  A  V  *  L  V  V  I  I  S  *  S  N  F  Y  S  *  *  L  G  S  Q  L  K  V  S  S  Y  *  *  F  I  V  T  K  I  *  N  T  F  *  F  F  F   </first_frame>
            <second_frame>  K  W  V  H  S  Q  K  N  R  V  A  C  G  *  G  D  R  E  E  I  L  P  W  K  N  G  R  K  M  E  *  L  T  T  V  A  M  P  P  A  M  I  I  R  F  Q  F  R  K  N  W  K  L  *  S  N  F  S  Q  S  T  M  A  N  *  K  Q  I  S  Y  L  K  K  Q  L  I  I  L  F  F  S  E  L  K  S  S  F  Y  R  N  C  S  I  F  V  T  M  H  L  V  S  P  N  I  L  M  L  Y  S  *  *  *  L  F  P  N  R  I  F  I  L  S  S  *  V  L  N  *  R  S  V  V  T  S  N  L  *  *  Q  K  S  E  I  H  S  N  F  F  F  </second_frame>
            <third_frame>   N  G  F  T  A  K  K  I  E  *  L  A  A  K  E  I  E  K  K  F  F  R  G  K  T  V  E  K  W  S  S  *  Q  Q  *  Q  C  R  R  R  *  *  F  D  F  N  F  G  K  I  G  S  S  E  A  T  S  P  S  Q  Q  W  R  T  K  S  R  S  V  I  *  R  N  S  *  L  Y  C  S  S  Q  N  S  N  L  R  F  T  E  T  A  R  F  L  *  R  C  I  W  S  V  P  T  Y  *  C  C  I  V  S  S  N  Y  F  L  I  E  F  L  F  L  V  V  R  F  S  I  E  G  Q  *  L  L  V  I  Y  S  D  K  N  L  K  Y  I  L  I  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50013" stop="49687"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMGSQPKKSSSLRLRRSRRNSSVEKRSKNGVVNNSSNAAGDDNSISISEKLEALKQLLPVNNGELKADQLFEETADYIVLLRTQIFVLQKLLDFCDDASGQSQHINAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="72356" PGL_stop="71617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72356" e_stop="72022"/>
            <exon e_start="71944" e_stop="71617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.979"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="72356" e_stop="72022" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72021" i_stop="71945" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="71944" e_stop="71617" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72356" stop="72022"/>
              <exon start="71944" stop="71617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTATGGAAATGAATCGGGTGGGTATGGGAGTAAAACCACATCTACCGGGTATGGAGATGAATCGGGTGGGTATGGGAGTAAAACCACATCTACCGGGTACGGAGATGAATCGGGTGGATATGGGAGTAAAACCAAATCCACCGGTCATGGAAGAAAGAGTGGTGGTGATGATGACGACGATGATGAGGGGAAAAAATCAGCATACGGATCTAGTGGGTATGGGAGTTCAACAGTTGAGAGGCCTAGTTATGGTAGGTCCGAGGAAGATGACTACAAGAAGTCTAGCTATGGGAAGGGCGGTGACGATGATGAAGGCTATGGTCGCAAGAAATAT : GGTGATTCTGACTCTGACTCCGACAAGGAGAAGAATAAAAATCGTCGCAAAAAGCACTCCGATGATGATTGAGCAGAGTCATGATTTTCTCAAATGTGATCTATTCATGTGTTATTTGAAGTTAGTTAGTAGTAAATAAAATAAAATTGGCATGTCTTCACAGTGTTTTATTGTTACGTTGCAAAAAACACTGATGATTGAGCTGAGATGCTTTTGTCATCCGCTCCAAATTTATGCCATATTATTATTATTAAATGAACTTTTTTATGTGTTTGTCGAGTCATGTTTGTACAGAGAAGGAAATGCCAGTAGTTATTTGTATCAATAG</gDNA_template>
            <first_frame> G  M  E  M  N  R  V  G  M  G  V  K  P  H  L  P  G  M  E  M  N  R  V  G  M  G  V  K  P  H  L  P  G  T  E  M  N  R  V  D  M  G  V  K  P  N  P  P  V  M  E  E  R  V  V  V  M  M  T  T  M  M  R  G  K  N  Q  H  T  D  L  V  G  M  G  V  Q  Q  L  R  G  L  V  M  V  G  P  R  K  M  T  T  R  S  L  A  M  G  R  A  V  T  M  M  K  A  M  V  A  R  N  M :   V  I  L  T  L  T  P  T  R  R  R  I  K  I  V  A  K  S  T  P  M  M  I  E  Q  S  H  D  F  L  K  C  D  L  F  M  C  Y  L  K  L  V  S  S  K  *  N  K  I  G  M  S  S  Q  C  F  I  V  T  L  Q  K  T  L  M  I  E  L  R  C  F  C  H  P  L  Q  I  Y  A  I  L  L  L  L  N  E  L  F  Y  V  F  V  E  S  C  L  Y  R  E  G  N  A  S  S  Y  L  Y  Q  * </first_frame>
            <second_frame>  V  W  K  *  I  G  W  V  W  E  *  N  H  I  Y  R  V  W  R  *  I  G  W  V  W  E  *  N  H  I  Y  R  V  R  R  *  I  G  W  I  W  E  *  N  Q  I  H  R  S  W  K  K  E  W  W  *  *  *  R  R  *  *  G  E  K  I  S  I  R  I  *  W  V  W  E  F  N  S  *  E  A  *  L  W  *  V  R  G  R  *  L  Q  E  V  *  L  W  E  G  R  *  R  *  *  R  L  W  S  Q  E  I   : W  *  F  *  L  *  L  R  Q  G  E  E  *  K  S  S  Q  K  A  L  R  *  *  L  S  R  V  M  I  F  S  N  V  I  Y  S  C  V  I  *  S  *  L  V  V  N  K  I  K  L  A  C  L  H  S  V  L  L  L  R  C  K  K  H  *  *  L  S  *  D  A  F  V  I  R  S  K  F  M  P  Y  Y  Y  Y  *  M  N  F  F  M  C  L  S  S  H  V  C  T  E  K  E  M  P  V  V  I  C  I  N   </second_frame>
            <third_frame>   Y  G  N  E  S  G  G  Y  G  S  K  T  T  S  T  G  Y  G  D  E  S  G  G  Y  G  S  K  T  T  S  T  G  Y  G  D  E  S  G  G  Y  G  S  K  T  K  S  T  G  H  G  R  K  S  G  G  D  D  D  D  D  D  E  G  K  K  S  A  Y  G  S  S  G  Y  G  S  S  T  V  E  R  P  S  Y  G  R  S  E  E  D  D  Y  K  K  S  S  Y  G  K  G  G  D  D  D  E  G  Y  G  R  K  K  Y  :  G  D  S  D  S  D  S  D  K  E  K  N  K  N  R  R  K  K  H  S  D  D  D  *  A  E  S  *  F  S  Q  M  *  S  I  H  V  L  F  E  V  S  *  *  *  I  K  *  N  W  H  V  F  T  V  F  Y  C  Y  V  A  K  N  T  D  D  *  A  E  M  L  L  S  S  A  P  N  L  C  H  I  I  I  I  K  *  T  F  L  C  V  C  R  V  M  F  V  Q  R  R  K  C  Q  *  L  F  V  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72356" stop="72022"/>
                    <exon start="71944" stop="71806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMEMNRVGMGVKPHLPGMEMNRVGMGVKPHLPGTEMNRVDMGVKPNPPVMEERVVVMMTTMMRGKNQHTDLVGMGVQQLRGLVMVGPRKMTTRSLAMGRAVTMMKAMVARNMVILTLTPTRRRIKIVAKSTPMMIEQSHDFLKCDLFMCYLKLVSSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72354" stop="72022"/>
                    <exon start="71944" stop="71873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGNESGGYGSKTTSTGYGDESGGYGSKTTSTGYGDESGGYGSKTKSTGHGRKSGGDDDDDDEGKKSAYGSSGYGSSTVERPSYGRSEEDDYKKSSYGKGGDDDEGYGRKKYGDSDSDSDKEKNKNRRKKHSDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="72997" PGL_stop="72424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72997" e_stop="72424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="72997" e_stop="72424" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72997" stop="72476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72984" stop="72424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72982" stop="72536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72921" stop="72720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTATCAATCGAGAAGAAAATAATTTTTGAAATTAACACAATCATGTCTTACGGTGAAAGTGAGTATGGTGGAAGTGGAATTGGATCCGGACAGGGAAAACCCAAAAAGTCACATGGATCTGGATATGGACGAAACGACGATGATGAGCCCCAATCTGAATATGGATCTGGTTACGGGTCAAAAAGTGCTACTCATGACTCTGATGATCAGTACGGGTCAGGTGGATATGGGAGCAAAACCGGATCCGGTGGGCATGGAAGGAAAAGTGAATACGGGGATAAGAGTTCGGAATATGGATCTGGTTATGGAAATGAATCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGATGATTCGGGTGGGTATGGGGGTAAAACCACATCCACCGGATATGGAGATGATTCGAATGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAAATGATTCGGGTGGATATGGGAGTAAAACCACATCCACCGGGTATGGAGACGATTCGGGTGGGTATGGGAGTAAAACCACATCCACCGGGTATGGAGATGAATCGGGTGGGTATGGG</gDNA_template>
            <first_frame> N  F  I  N  R  E  E  N  N  F  *  N  *  H  N  H  V  L  R  *  K  *  V  W  W  K  W  N  W  I  R  T  G  K  T  Q  K  V  T  W  I  W  I  W  T  K  R  R  *  *  A  P  I  *  I  W  I  W  L  R  V  K  K  C  Y  S  *  L  *  *  S  V  R  V  R  W  I  W  E  Q  N  R  I  R  W  A  W  K  E  K  *  I  R  G  *  E  F  G  I  W  I  W  L  W  K  *  I  G  W  I  W  E  *  N  H  I  H  R  V  W  R  *  F  G  W  V  W  G  *  N  H  I  H  R  I  W  R  *  F  E  W  V  W  E  *  N  H  I  H  R  V  W  K  *  F  G  W  I  W  E  *  N  H  I  H  R  V  W  R  R  F  G  W  V  W  E  *  N  H  I  H  R  V  W  R  *  I  G  W  V  W  </first_frame>
            <second_frame>  I  L  S  I  E  K  K  I  I  F  E  I  N  T  I  M  S  Y  G  E  S  E  Y  G  G  S  G  I  G  S  G  Q  G  K  P  K  K  S  H  G  S  G  Y  G  R  N  D  D  D  E  P  Q  S  E  Y  G  S  G  Y  G  S  K  S  A  T  H  D  S  D  D  Q  Y  G  S  G  G  Y  G  S  K  T  G  S  G  G  H  G  R  K  S  E  Y  G  D  K  S  S  E  Y  G  S  G  Y  G  N  E  S  G  G  Y  G  S  K  T  T  S  T  G  Y  G  D  D  S  G  G  Y  G  G  K  T  T  S  T  G  Y  G  D  D  S  N  G  Y  G  S  K  T  T  S  T  G  Y  G  N  D  S  G  G  Y  G  S  K  T  T  S  T  G  Y  G  D  D  S  G  G  Y  G  S  K  T  T  S  T  G  Y  G  D  E  S  G  G  Y  G </second_frame>
            <third_frame>   F  Y  Q  S  R  R  K  *  F  L  K  L  T  Q  S  C  L  T  V  K  V  S  M  V  E  V  E  L  D  P  D  R  E  N  P  K  S  H  M  D  L  D  M  D  E  T  T  M  M  S  P  N  L  N  M  D  L  V  T  G  Q  K  V  L  L  M  T  L  M  I  S  T  G  Q  V  D  M  G  A  K  P  D  P  V  G  M  E  G  K  V  N  T  G  I  R  V  R  N  M  D  L  V  M  E  M  N  R  V  D  M  G  V  K  P  H  P  P  G  M  E  M  I  R  V  G  M  G  V  K  P  H  P  P  D  M  E  M  I  R  M  G  M  G  V  K  P  H  P  P  G  M  E  M  I  R  V  D  M  G  V  K  P  H  P  P  G  M  E  T  I  R  V  G  M  G  V  K  P  H  P  P  G  M  E  M  N  R  V  G  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72996" stop="72424"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSIEKKIIFEINTIMSYGESEYGGSGIGSGQGKPKKSHGSGYGRNDDDEPQSEYGSGYGSKSATHDSDDQYGSGGYGSKTGSGGHGRKSEYGDKSSEYGSGYGNESGGYGSKTTSTGYGDDSGGYGGKTTSTGYGDDSNGYGSKTTSTGYGNDSGGYGSKTTSTGYGDDSGGYGSKTTSTGYGDESGGYG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72971" stop="72426"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKLTQSCLTVKVSMVEVELDPDRENPKSHMDLDMDETTMMSPNLNMDLVTGQKVLLMTLMISTGQVDMGAKPDPVGMEGKVNTGIRVRNMDLVMEMNRVDMGVKPHPPGMEMIRVGMGVKPHPPDMEMIRMGMGVKPHPPGMEMIRVDMGVKPHPPGMETIRVGMGVKPHPPGMEMNRVGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79409" PGL_stop="79088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79409" e_stop="79088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="79409" e_stop="79088" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79409" stop="79088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79409" stop="79105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAACTAGAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACATTTCTGTGTATAAAGTGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  N  *  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  I  S  V  Y  K  V  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  T  R  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  F  L  C  I  K  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0025N15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="86015" PGL_stop="85449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86015" e_stop="85449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="86015" e_stop="85449" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86015" stop="85449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTGGTGCTGTTTTGGCCGTTATGAGGAGAAATGTAAGGTGGGGGTTCCATTATGCTGCTGCTGATGATCAGCTAGAGCATCCTCTCATACATTCTTTCAAGGAATTACGGAAAAATGTCTTCTCATGGAAACATCACTGGAACAGAGTTGATCCACTCCTATATCTTCAGCCTTTCTTGGATGTGATTCAATCTGATGAAACTGGTGCACCAATAACCGGTGTTGCACTGTCTTCTGTTTACAAATTCTTAACCCTTGAAATAATTGATTCATCTATCATGAATGTGGAGAAAGCTTTATATCAGATAGTTGAGACCGTGACAAGTTGCCGCTTTGAAGTGACTGATCCTGCCTCTGAGGAAGTGGTACTGATGAAGATACTTCAGGTTCTTTTGGCTTGCATGAAAAGTAAGGCATCAGAAAATTTAAGTAATCATCACGTGTGCAACATTGTAAACACTTGCTTTCGGCTTGTTCATCAAGCTAGTGCCAAAAGTGAACTGCTGCAGAGAATAGCAAGACACACAATGCATGAATTGGTGAGACACATTTTCGCTCACCT</gDNA_template>
            <first_frame> R  N  W  C  C  F  G  R  Y  E  E  K  C  K  V  G  V  P  L  C  C  C  *  *  S  A  R  A  S  S  H  T  F  F  Q  G  I  T  E  K  C  L  L  M  E  T  S  L  E  Q  S  *  S  T  P  I  S  S  A  F  L  G  C  D  S  I  *  *  N  W  C  T  N  N  R  C  C  T  V  F  C  L  Q  I  L  N  P  *  N  N  *  F  I  Y  H  E  C  G  E  S  F  I  S  D  S  *  D  R  D  K  L  P  L  *  S  D  *  S  C  L  *  G  S  G  T  D  E  D  T  S  G  S  F  G  L  H  E  K  *  G  I  R  K  F  K  *  S  S  R  V  Q  H  C  K  H  L  L  S  A  C  S  S  S  *  C  Q  K  *  T  A  A  E  N  S  K  T  H  N  A  *  I  G  E  T  H  F  R  S  P </first_frame>
            <second_frame>  E  I  G  A  V  L  A  V  M  R  R  N  V  R  W  G  F  H  Y  A  A  A  D  D  Q  L  E  H  P  L  I  H  S  F  K  E  L  R  K  N  V  F  S  W  K  H  H  W  N  R  V  D  P  L  L  Y  L  Q  P  F  L  D  V  I  Q  S  D  E  T  G  A  P  I  T  G  V  A  L  S  S  V  Y  K  F  L  T  L  E  I  I  D  S  S  I  M  N  V  E  K  A  L  Y  Q  I  V  E  T  V  T  S  C  R  F  E  V  T  D  P  A  S  E  E  V  V  L  M  K  I  L  Q  V  L  L  A  C  M  K  S  K  A  S  E  N  L  S  N  H  H  V  C  N  I  V  N  T  C  F  R  L  V  H  Q  A  S  A  K  S  E  L  L  Q  R  I  A  R  H  T  M  H  E  L  V  R  H  I  F  A  H   </second_frame>
            <third_frame>   K  L  V  L  F  W  P  L  *  G  E  M  *  G  G  G  S  I  M  L  L  L  M  I  S  *  S  I  L  S  Y  I  L  S  R  N  Y  G  K  M  S  S  H  G  N  I  T  G  T  E  L  I  H  S  Y  I  F  S  L  S  W  M  *  F  N  L  M  K  L  V  H  Q  *  P  V  L  H  C  L  L  F  T  N  S  *  P  L  K  *  L  I  H  L  S  *  M  W  R  K  L  Y  I  R  *  L  R  P  *  Q  V  A  A  L  K  *  L  I  L  P  L  R  K  W  Y  *  *  R  Y  F  R  F  F  W  L  A  *  K  V  R  H  Q  K  I  *  V  I  I  T  C  A  T  L  *  T  L  A  F  G  L  F  I  K  L  V  P  K  V  N  C  C  R  E  *  Q  D  T  Q  C  M  N  W  *  D  T  F  S  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86014" stop="85451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGAVLAVMRRNVRWGFHYAAADDQLEHPLIHSFKELRKNVFSWKHHWNRVDPLLYLQPFLDVIQSDETGAPITGVALSSVYKFLTLEIIDSSIMNVEKALYQIVETVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASENLSNHHVCNIVNTCFRLVHQASAKSELLQRIARHTMHELVRHIFAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="103073" PGL_stop="91175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103073" e_stop="103046"/>
            <exon e_start="101132" e_stop="100939"/>
            <exon e_start="100389" e_stop="100205"/>
            <exon e_start="100116" e_stop="99934"/>
            <exon e_start="96807" e_stop="96676"/>
            <exon e_start="96081" e_stop="95896"/>
            <exon e_start="93662" e_stop="93573"/>
            <exon e_start="93501" e_stop="93418"/>
            <exon e_start="93190" e_stop="93053"/>
            <exon e_start="92630" e_stop="92388"/>
            <exon e_start="91641" e_stop="91175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="1.000" e_score="0.750"/>
          <exon-intron don_prob="0.000" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="103073" e_stop="103046" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103045" i_stop="101133" i_length="1913"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101132" e_stop="100939" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="100938" i_stop="100390" i_length="549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100389" e_stop="100205" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.934">
            <gDNA_intron_boundary i_start="100204" i_stop="100117" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100116" e_stop="99934" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99933" i_stop="96808" i_length="3126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96807" e_stop="96676" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="96675" i_stop="96082" i_length="594"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96081" e_stop="95896" e_length="186"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.936">
            <gDNA_intron_boundary i_start="95895" i_stop="93663" i_length="2233"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93662" e_stop="93573" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="93572" i_stop="93502" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93501" e_stop="93418" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93417" i_stop="93191" i_length="227"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93190" e_stop="93053" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="93052" i_stop="92631" i_length="422"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92630" e_stop="92388" e_length="243"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92387" i_stop="91642" i_length="746"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="91641" e_stop="91175" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103073" stop="103046"/>
              <exon start="101132" stop="100939"/>
              <exon start="100389" stop="100205"/>
              <exon start="100116" stop="99934"/>
              <exon start="96807" stop="96676"/>
              <exon start="96081" stop="95896"/>
              <exon start="93662" stop="93573"/>
              <exon start="93501" stop="93418"/>
              <exon start="93190" stop="93053"/>
              <exon start="92630" stop="92388"/>
              <exon start="91641" stop="91175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96723" stop="96676"/>
              <exon start="96081" stop="95896"/>
              <exon start="93662" stop="93573"/>
              <exon start="93501" stop="93418"/>
              <exon start="93190" stop="93053"/>
              <exon start="92630" stop="92396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92630" stop="92388"/>
              <exon start="91641" stop="91298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTCTGTGGAAGGAAAACATCAAAG : GAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAG : TCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAG : ATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAG : GTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAG : GGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAG : ATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAG : GGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATG : GAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAG : TCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAG : CTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTTTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAACTGCAAGATGAGCGCGATGTCTGTCTGTGACCCATTCCCTCTTCTCCCCTTATCGACGATCATTTGGAGTCCAACGAAGATTTTCTTGTGTCAAATTTGAAATGTTTGTCTGAATAAAAACAAGTCCCAAC</gDNA_template>
            <first_frame> Q  I  L  W  K  E  N  I  K   : G  K  W  T  E  Q  Q  C  R  A  P  A  V  L  T  H  F  Y  G  T  I  N  S  G  K  H  L  A  L  D  R  S  A  K  L  K  *  L  N  I  R  *  Q  G  T  K  L  L  S  R  F  L  I  V  E  K  S  G  I  W  T  W  R  R  K  :  S  V  E  K  S  K  Y  *  D  C  S  C  I  L  I  L  Y  G  F  M  R  S  *  R  H  H  Q  I  Y  M  L  *  W  S  M  *  N  L  A  S  Y  L  I  T  L  L  R  R  A  D  C  R  R  M  K  L  V  T  F  F  S  R :   *  F  L  V  W  S  T  A  I  E  T  W  W  F  I  E  T  L  S  L  K  T  S  F  W  T  P  N  G  M  *  R  S  Q  I  L  V  *  A  I  S  C  A  M  V  I  F  *  R  Q  V  A  E  A  Q  T  M  L  P  Q  R :   L  Y  Q  V  N  C  M  L  A  L  R  *  M  Y  G  A  V  V  L  F  F  M  L  F  S  V  A  P  F  R  L  T  M  K  T  Y  P  I  F  L  R  K  *  R :   V  E  Y  I  L  C  P  A  I  Y  Q  L  V  R  G  I  *  F  R  G  C  L  *  S  T  Q  *  S  E  *  L  F  L  R  F  A  C  T  L  G  S  K  L  I  C  H  A  I  W  P  C  L  H  Q  I  Q  P  N  K  Q  R  R :   S  M  K  R  F  F  K  R  W  L  R  W  D  L  T  G  T  T  L  L  S  L  F  A  I  E  F  K  M  R :   A  L  L  H  T  I  C  S  W  T  I  A  I  V  F  P  L  A  I  L  E  L  N  F  R  S  P  W :   N  M  V  T  T  G  S  I  L  M  K  P  L  L  P  L  L  V  N  V  S  Q  E  *  W  I  I  S  K  L  V  Q  D  S  S  P  L  K  E  N  G  L  L  A  S  S :   L  E  R  I  H  V  K  *  *  L  K  F  *  K  L  C  K  N  *  M  Y  V  G  K  R  L  V  S  I  T  *  N  V  D  G  F  L  A  Y  L  V  I  M  K  A  W  V  L  I  P  C  M  G  I  S  S  L  E  M  I  H  P  S  L  R  M  M  G  P  Q  S  *  Q  M  W  S  S  L  K  F  S :   F  T  K  P  G  R  R  S  T  C  L  T  F  R  D  F  R  V  H  N  S  S  S  W  I  S  V  L  L  F  L  L  S  F  E  Y  F  K  V  S  E  I  R  S  *  V  G  K  S  P  C  L  Y  I  I  G  I  P  A  Q  L  L  H  F  V  L  L  T  N  S  T  L  L  G  Q  R  C  L  A  T  L  F  F  F  *  F  A  R  R  S  S  S  L  S  F  L  T  F  M  E  F  Q  L  P  T  V  S  T  Y  R  L  N  C  K  M  S  A  M  S  V  C  D  P  F  P  L  L  P  L  S  T  I  I  W  S  P  T  K  I  F  L  C  Q  I  *  N  V  C  L  N  K  N  K  S  Q  </first_frame>
            <second_frame>  R  F  C  G  R  K  T  S  K  :  E  N  G  R  N  S  S  A  G  H  Q  Q  C  *  L  I  F  T  E  L  *  T  R  E  N  T  W  H  W  I  V  R  Q  S  *  N  S  *  T  Y  V  N  R  A  Q  S  C  C  Q  D  S  *  S  S  K  N  Q  E  Y  G  H  G  G  E  S :   P  *  R  N  Q  N  I  E  I  V  H  A  S  S  Y  Y  T  A  L  *  G  H  R  D  T  I  R  Y  I  C  C  D  G  V  C  E  I  W  R  V  I  *  L  H  C  *  E  G  Q  I  A  G  G  *  S  S  *  L  F  S  A   : D  N  F  W  C  G  V  L  P  *  K  H  G  G  S  *  R  P  *  A  *  K  P  P  S  G  L  Q  M  E  C  E  D  R  R  F  W  F  E  Q  Y  H  A  R  W  S  F  S  E  D  K  L  R  K  P  K  L  C  C  P  R   : G  Y  I  R  *  I  V  C  W  P  *  G  R  C  M  E  L  W  C  Y  S  L  C  S  S  L  W  H  P  S  V  *  R  *  K  H  T  Q  S  F  *  E  N  K   : G  W  N  I  Y  S  A  Q  P  F  I  S  W  C  E  G  F  D  S  E  D  A  Y  S  R  P  N  E  A  N  D  Y  S  *  D  S  P  A  P  L  V  P  S  S  F  A  T  L  F  G  R  A  S  T  R  Y  N  P  T  S  K  E   : D  R  *  R  D  S  S  R  G  G  *  D  G  I  *  Q  E  Q  P  Y  *  V  S  S  Q  *  S  S  K  *   : G  H  C  C  I  L  S  A  P  G  Q  S  P  S  C  F  H  W  L  S  W  S  *  I  S  G  V  H   : G  I  W  L  Q  P  D  Q  F  *  *  N  R  C  F  P  C  W  S  T  F  P  R  N  N  G  L  S  A  S  W  C  K  T  V  P  H  *  K  K  M  G  S  W  P  P   : V  S  S  A  S  T  *  N  N  D  *  S  F  E  S  S  A  R  T  E  C  M  L  E  K  D  W  S  V  *  H  E  M  S  M  G  S  *  L  T  W  S  S  *  R  H  G  C  *  F  H  A  W  E  S  V  L  W  R  *  F  I  H  H  *  E  *  W  G  H  K  V  N  K  C  G  Q  V  *  S  S   : A  L  Q  N  Q  G  G  E  V  L  A  *  P  S  E  T  S  G  S  T  I  P  L  P  G  S  L  C  C  F  S  C  S  A  S  S  T  L  K  S  P  K  *  G  A  K  L  E  K  A  H  A  C  I  *  L  V  Y  Q  L  S  Y  C  I  L  S  C  *  Q  I  P  P  C  L  V  R  G  A  *  Q  L  F  F  S  F  D  S  L  G  D  L  A  H  S  L  F  *  R  L  W  N  F  S  Y  L  Q  Y  L  L  T  D  *  T  A  R  *  A  R  C  L  S  V  T  H  S  L  F  S  P  Y  R  R  S  F  G  V  Q  R  R  F  S  C  V  K  F  E  M  F  V  *  I  K  T  S  P  N </second_frame>
            <third_frame>   D  S  V  E  G  K  H  Q  R :   K  M  D  G  T  A  V  Q  G  T  S  S  V  D  S  F  L  R  N  Y  K  L  G  K  T  L  G  I  G  S  F  G  K  V  K  I  A  E  H  T  L  T  G  H  K  V  A  V  K  I  L  N  R  R  K  I  R  N  M  D  M  E  E  K   : V  R  R  E  I  K  I  L  R  L  F  M  H  P  H  I  I  R  L  Y  E  V  I  E  T  P  S  D  I  Y  V  V  M  E  Y  V  K  S  G  E  L  F  D  Y  I  V  E  K  G  R  L  Q  E  D  E  A  R  N  F  F  Q  Q  :  I  I  S  G  V  E  Y  C  H  R  N  M  V  V  H  R  D  L  K  P  E  N  L  L  L  D  S  K  W  N  V  K  I  A  D  F  G  L  S  N  I  M  R  D  G  H  F  L  K  T  S  C  G  S  P  N  Y  A  A  P  E  :  V  I  S  G  K  L  Y  A  G  P  E  V  D  V  W  S  C  G  V  I  L  Y  A  L  L  C  G  T  L  P  F  D  D  E  N  I  P  N  L  F  K  K  I  K  :  G  G  I  Y  T  L  P  S  H  L  S  A  G  A  R  D  L  I  P  R  M  L  I  V  D  P  M  K  R  M  T  I  P  E  I  R  L  H  P  W  F  Q  A  H  L  P  R  Y  L  A  V  P  P  P  D  T  T  Q  Q  A  K  K  :  I  D  E  E  I  L  Q  E  V  V  K  M  G  F  D  R  N  N  L  T  E  S  L  R  N  R  V  Q  N  E  :  G  T  V  A  Y  Y  L  L  L  D  N  R  H  R  V  S  T  G  Y  L  G  A  E  F  Q  E  S  M  :  E  Y  G  Y  N  R  I  N  S  N  E  T  A  A  S  P  V  G  Q  R  F  P  G  I  M  D  Y  Q  Q  A  G  A  R  Q  F  P  I  E  R  K  W  A  L  G  L  Q  :  S  R  A  H  P  R  E  I  M  T  E  V  L  K  A  L  Q  E  L  N  V  C  W  K  K  I  G  Q  Y  N  M  K  C  R  W  V  P  S  L  P  G  H  H  E  G  M  G  V  N  S  M  H  G  N  Q  F  F  G  D  D  S  S  I  I  E  N  D  G  A  T  K  L  T  N  V  V  K  F  E  V  Q  :  L  Y  K  T  R  E  E  K  Y  L  L  D  L  Q  R  L  Q  G  P  Q  F  L  F  L  D  L  C  A  A  F  L  A  Q  L  R  V  L  *  S  L  R  N  K  E  L  S  W  K  K  P  M  L  V  Y  N  W  Y  T  S  S  V  T  A  F  C  L  V  N  K  F  H  P  A  W  S  E  V  P  S  N  S  F  F  L  L  I  R  *  E  I  *  L  T  L  F  F  N  V  Y  G  I  S  V  T  Y  S  I  Y  L  Q  I  E  L  Q  D  E  R  D  V  C  L  *  P  I  P  S  S  P  L  I  D  D  H  L  E  S  N  E  D  F  L  V  S  N  L  K  C  L  S  E  *  K  Q  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103071" stop="103046"/>
                    <exon start="101132" stop="100939"/>
                    <exon start="100389" stop="100205"/>
                    <exon start="100116" stop="99934"/>
                    <exon start="96807" stop="96676"/>
                    <exon start="96081" stop="95896"/>
                    <exon start="93662" stop="93573"/>
                    <exon start="93501" stop="93418"/>
                    <exon start="93190" stop="93053"/>
                    <exon start="92630" stop="92388"/>
                    <exon start="91641" stop="91528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1572</number_coding_nucleotides>
                  <number_encoded_amino_acids>524</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVEGKHQRKMDGTAVQGTSSVDSFLRNYKLGKTLGIGSFGKVKIAEHTLTGHKVAVKILNRRKIRNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSAGARDLIPRMLIVDPMKRMTIPEIRLHPWFQAHLPRYLAVPPPDTTQQAKKIDEEILQEVVKMGFDRNNLTESLRNRVQNEGTVAYYLLLDNRHRVSTGYLGAEFQESMEYGYNRINSNETAASPVGQRFPGIMDYQQAGARQFPIERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGQYNMKCRWVPSLPGHHEGMGVNSMHGNQFFGDDSSIIENDGATKLTNVVKFEVQLYKTREEKYLLDLQRLQGPQFLFLDLCAAFLAQLRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102646" e_stop="102586"/>
            <exon e_start="101132" e_stop="100939"/>
            <exon e_start="100389" e_stop="100205"/>
            <exon e_start="100116" e_stop="99934"/>
            <exon e_start="96807" e_stop="96676"/>
            <exon e_start="96081" e_stop="95896"/>
            <exon e_start="93662" e_stop="93573"/>
            <exon e_start="93501" e_stop="93418"/>
            <exon e_start="93190" e_stop="93053"/>
            <exon e_start="92630" e_stop="92388"/>
            <exon e_start="91641" e_stop="91298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.996"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102646" e_stop="102586" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102585" i_stop="101133" i_length="1453"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101132" e_stop="100939" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="100938" i_stop="100390" i_length="549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100389" e_stop="100205" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.934">
            <gDNA_intron_boundary i_start="100204" i_stop="100117" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100116" e_stop="99934" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99933" i_stop="96808" i_length="3126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96807" e_stop="96676" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="96675" i_stop="96082" i_length="594"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96081" e_stop="95896" e_length="186"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.936">
            <gDNA_intron_boundary i_start="95895" i_stop="93663" i_length="2233"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93662" e_stop="93573" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="93572" i_stop="93502" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93501" e_stop="93418" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93417" i_stop="93191" i_length="227"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93190" e_stop="93053" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="93052" i_stop="92631" i_length="422"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="92630" e_stop="92388" e_length="243"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92387" i_stop="91642" i_length="746"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="91641" e_stop="91298" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102646" stop="102586"/>
              <exon start="101132" stop="100939"/>
              <exon start="100389" stop="100205"/>
              <exon start="100116" stop="99934"/>
              <exon start="96807" stop="96676"/>
              <exon start="96081" stop="95962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96723" stop="96676"/>
              <exon start="96081" stop="95896"/>
              <exon start="93662" stop="93573"/>
              <exon start="93501" stop="93418"/>
              <exon start="93190" stop="93053"/>
              <exon start="92630" stop="92396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92630" stop="92388"/>
              <exon start="91641" stop="91298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTCATATTTTGTTGTTGAATTTCTTCAATCTGCTTCTTGGGGTTTAGCTTCTGCCAG : GAAAATGGACGGAACAGCAGTGCAGGGCACCAGCAGTGTTGACTCATTTTTACGGAACTATAAACTCGGGAAAACACTTGGCATTGGATCGTTCGGCAAAGTTAAAATAGCTGAACATACGTTAACAGGGCACAAAGTTGCTGTCAAGATTCTTAATCGTCGAAAAATCAGGAATATGGACATGGAGGAGAAAG : TCCGTAGAGAAATCAAAATATTGAGATTGTTCATGCATCCTCATATTATACGGCTTTATGAGGTCATAGAGACACCATCAGATATATATGTTGTGATGGAGTATGTGAAATCTGGCGAGTTATTTGATTACATTGTTGAGAAGGGCAGATTGCAGGAGGATGAAGCTCGTAACTTTTTTCAGCAG : ATAATTTCTGGTGTGGAGTACTGCCATAGAAACATGGTGGTTCATAGAGACCTTAAGCCTGAAAACCTCCTTCTGGACTCCAAATGGAATGTGAAGATCGCAGATTTTGGTTTGAGCAATATCATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGCCCAAACTATGCTGCCCCAGAG : GTTATATCAGGTAAATTGTATGCTGGCCCTGAGGTAGATGTATGGAGCTGTGGTGTTATTCTTTATGCTCTTCTCTGTGGCACCCTTCCGTTTGACGATGAAAACATACCCAATCTTTTTAAGAAAATAAAG : GGTGGAATATATACTCTGCCCAGCCATTTATCAGCTGGTGCGAGGGATTTGATTCCGAGGATGCTTATAGTCGACCCAATGAAGCGAATGACTATTCCTGAGATTCGCCTGCACCCTTGGTTCCAAGCTCATTTGCCACGCTATTTGGCCGTGCCTCCACCAGATACAACCCAACAAGCAAAGAAG : ATCGATGAAGAGATTCTTCAAGAGGTGGTTAAGATGGGATTTGACAGGAACAACCTTACTGAGTCTCTTCGCAATAGAGTTCAAAATGAG : GGCACTGTTGCATACTATCTGCTCCTGGACAATCGCCATCGTGTTTCCACTGGCTATCTTGGAGCTGAATTTCAGGAGTCCATG : GAATATGGTTACAACCGGATCAATTCTAATGAAACCGCTGCTTCCCCTGTTGGTCAACGTTTCCCAGGAATAATGGATTATCAGCAAGCTGGTGCAAGACAGTTCCCCATTGAAAGAAAATGGGCTCTTGGCCTCCAG : TCTCGAGCGCATCCACGTGAAATAATGACTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTGGAAAAAGATTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATCAGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAG : CTTTACAAAACCAGGGAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACTTTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACAAATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTTTAACGTTTATGGAATTTCAGTTACCTACAGTATCTACTTACAGATTGAACTGCAAGA</gDNA_template>
            <first_frame> N  F  H  I  L  L  L  N  F  F  N  L  L  L  G  V  *  L  L  P   : G  K  W  T  E  Q  Q  C  R  A  P  A  V  L  T  H  F  Y  G  T  I  N  S  G  K  H  L  A  L  D  R  S  A  K  L  K  *  L  N  I  R  *  Q  G  T  K  L  L  S  R  F  L  I  V  E  K  S  G  I  W  T  W  R  R  K  :  S  V  E  K  S  K  Y  *  D  C  S  C  I  L  I  L  Y  G  F  M  R  S  *  R  H  H  Q  I  Y  M  L  *  W  S  M  *  N  L  A  S  Y  L  I  T  L  L  R  R  A  D  C  R  R  M  K  L  V  T  F  F  S  R :   *  F  L  V  W  S  T  A  I  E  T  W  W  F  I  E  T  L  S  L  K  T  S  F  W  T  P  N  G  M  *  R  S  Q  I  L  V  *  A  I  S  C  A  M  V  I  F  *  R  Q  V  A  E  A  Q  T  M  L  P  Q  R :   L  Y  Q  V  N  C  M  L  A  L  R  *  M  Y  G  A  V  V  L  F  F  M  L  F  S  V  A  P  F  R  L  T  M  K  T  Y  P  I  F  L  R  K  *  R :   V  E  Y  I  L  C  P  A  I  Y  Q  L  V  R  G  I  *  F  R  G  C  L  *  S  T  Q  *  S  E  *  L  F  L  R  F  A  C  T  L  G  S  K  L  I  C  H  A  I  W  P  C  L  H  Q  I  Q  P  N  K  Q  R  R :   S  M  K  R  F  F  K  R  W  L  R  W  D  L  T  G  T  T  L  L  S  L  F  A  I  E  F  K  M  R :   A  L  L  H  T  I  C  S  W  T  I  A  I  V  F  P  L  A  I  L  E  L  N  F  R  S  P  W :   N  M  V  T  T  G  S  I  L  M  K  P  L  L  P  L  L  V  N  V  S  Q  E  *  W  I  I  S  K  L  V  Q  D  S  S  P  L  K  E  N  G  L  L  A  S  S :   L  E  R  I  H  V  K  *  *  L  K  F  *  K  L  C  K  N  *  M  Y  V  G  K  R  L  V  S  I  T  *  N  V  D  G  F  L  A  Y  L  V  I  M  K  A  W  V  L  I  P  C  M  G  I  S  S  L  E  M  I  H  P  S  L  R  M  M  G  P  Q  S  *  Q  M  W  S  S  L  K  F  S :   F  T  K  P  G  R  R  S  T  C  L  T  F  R  D  F  R  V  H  N  S  S  S  W  I  S  V  L  L  F  L  L  S  F  E  Y  F  K  V  S  E  I  R  S  *  V  G  K  S  P  C  L  Y  I  I  G  I  P  A  Q  L  L  H  F  V  L  L  T  N  S  T  L  L  G  Q  R  C  L  A  T  L  F  F  F  *  F  A  R  R  S  S  S  L  S  F  L  T  F  M  E  F  Q  L  P  T  V  S  T  Y  R  L  N  C  K  </first_frame>
            <second_frame>  I  F  I  F  C  C  *  I  S  S  I  C  F  L  G  F  S  F  C  Q  :  E  N  G  R  N  S  S  A  G  H  Q  Q  C  *  L  I  F  T  E  L  *  T  R  E  N  T  W  H  W  I  V  R  Q  S  *  N  S  *  T  Y  V  N  R  A  Q  S  C  C  Q  D  S  *  S  S  K  N  Q  E  Y  G  H  G  G  E  S :   P  *  R  N  Q  N  I  E  I  V  H  A  S  S  Y  Y  T  A  L  *  G  H  R  D  T  I  R  Y  I  C  C  D  G  V  C  E  I  W  R  V  I  *  L  H  C  *  E  G  Q  I  A  G  G  *  S  S  *  L  F  S  A   : D  N  F  W  C  G  V  L  P  *  K  H  G  G  S  *  R  P  *  A  *  K  P  P  S  G  L  Q  M  E  C  E  D  R  R  F  W  F  E  Q  Y  H  A  R  W  S  F  S  E  D  K  L  R  K  P  K  L  C  C  P  R   : G  Y  I  R  *  I  V  C  W  P  *  G  R  C  M  E  L  W  C  Y  S  L  C  S  S  L  W  H  P  S  V  *  R  *  K  H  T  Q  S  F  *  E  N  K   : G  W  N  I  Y  S  A  Q  P  F  I  S  W  C  E  G  F  D  S  E  D  A  Y  S  R  P  N  E  A  N  D  Y  S  *  D  S  P  A  P  L  V  P  S  S  F  A  T  L  F  G  R  A  S  T  R  Y  N  P  T  S  K  E   : D  R  *  R  D  S  S  R  G  G  *  D  G  I  *  Q  E  Q  P  Y  *  V  S  S  Q  *  S  S  K  *   : G  H  C  C  I  L  S  A  P  G  Q  S  P  S  C  F  H  W  L  S  W  S  *  I  S  G  V  H   : G  I  W  L  Q  P  D  Q  F  *  *  N  R  C  F  P  C  W  S  T  F  P  R  N  N  G  L  S  A  S  W  C  K  T  V  P  H  *  K  K  M  G  S  W  P  P   : V  S  S  A  S  T  *  N  N  D  *  S  F  E  S  S  A  R  T  E  C  M  L  E  K  D  W  S  V  *  H  E  M  S  M  G  S  *  L  T  W  S  S  *  R  H  G  C  *  F  H  A  W  E  S  V  L  W  R  *  F  I  H  H  *  E  *  W  G  H  K  V  N  K  C  G  Q  V  *  S  S   : A  L  Q  N  Q  G  G  E  V  L  A  *  P  S  E  T  S  G  S  T  I  P  L  P  G  S  L  C  C  F  S  C  S  A  S  S  T  L  K  S  P  K  *  G  A  K  L  E  K  A  H  A  C  I  *  L  V  Y  Q  L  S  Y  C  I  L  S  C  *  Q  I  P  P  C  L  V  R  G  A  *  Q  L  F  F  S  F  D  S  L  G  D  L  A  H  S  L  F  *  R  L  W  N  F  S  Y  L  Q  Y  L  L  T  D  *  T  A  R </second_frame>
            <third_frame>   F  S  Y  F  V  V  E  F  L  Q  S  A  S  W  G  L  A  S  A  R :   K  M  D  G  T  A  V  Q  G  T  S  S  V  D  S  F  L  R  N  Y  K  L  G  K  T  L  G  I  G  S  F  G  K  V  K  I  A  E  H  T  L  T  G  H  K  V  A  V  K  I  L  N  R  R  K  I  R  N  M  D  M  E  E  K   : V  R  R  E  I  K  I  L  R  L  F  M  H  P  H  I  I  R  L  Y  E  V  I  E  T  P  S  D  I  Y  V  V  M  E  Y  V  K  S  G  E  L  F  D  Y  I  V  E  K  G  R  L  Q  E  D  E  A  R  N  F  F  Q  Q  :  I  I  S  G  V  E  Y  C  H  R  N  M  V  V  H  R  D  L  K  P  E  N  L  L  L  D  S  K  W  N  V  K  I  A  D  F  G  L  S  N  I  M  R  D  G  H  F  L  K  T  S  C  G  S  P  N  Y  A  A  P  E  :  V  I  S  G  K  L  Y  A  G  P  E  V  D  V  W  S  C  G  V  I  L  Y  A  L  L  C  G  T  L  P  F  D  D  E  N  I  P  N  L  F  K  K  I  K  :  G  G  I  Y  T  L  P  S  H  L  S  A  G  A  R  D  L  I  P  R  M  L  I  V  D  P  M  K  R  M  T  I  P  E  I  R  L  H  P  W  F  Q  A  H  L  P  R  Y  L  A  V  P  P  P  D  T  T  Q  Q  A  K  K  :  I  D  E  E  I  L  Q  E  V  V  K  M  G  F  D  R  N  N  L  T  E  S  L  R  N  R  V  Q  N  E  :  G  T  V  A  Y  Y  L  L  L  D  N  R  H  R  V  S  T  G  Y  L  G  A  E  F  Q  E  S  M  :  E  Y  G  Y  N  R  I  N  S  N  E  T  A  A  S  P  V  G  Q  R  F  P  G  I  M  D  Y  Q  Q  A  G  A  R  Q  F  P  I  E  R  K  W  A  L  G  L  Q  :  S  R  A  H  P  R  E  I  M  T  E  V  L  K  A  L  Q  E  L  N  V  C  W  K  K  I  G  Q  Y  N  M  K  C  R  W  V  P  S  L  P  G  H  H  E  G  M  G  V  N  S  M  H  G  N  Q  F  F  G  D  D  S  S  I  I  E  N  D  G  A  T  K  L  T  N  V  V  K  F  E  V  Q  :  L  Y  K  T  R  E  E  K  Y  L  L  D  L  Q  R  L  Q  G  P  Q  F  L  F  L  D  L  C  A  A  F  L  A  Q  L  R  V  L  *  S  L  R  N  K  E  L  S  W  K  K  P  M  L  V  Y  N  W  Y  T  S  S  V  T  A  F  C  L  V  N  K  F  H  P  A  W  S  E  V  P  S  N  S  F  F  L  L  I  R  *  E  I  *  L  T  L  F  F  N  V  Y  G  I  S  V  T  Y  S  I  Y  L  Q  I  E  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102644" stop="102586"/>
                    <exon start="101132" stop="100939"/>
                    <exon start="100389" stop="100205"/>
                    <exon start="100116" stop="99934"/>
                    <exon start="96807" stop="96676"/>
                    <exon start="96081" stop="95896"/>
                    <exon start="93662" stop="93573"/>
                    <exon start="93501" stop="93418"/>
                    <exon start="93190" stop="93053"/>
                    <exon start="92630" stop="92388"/>
                    <exon start="91641" stop="91528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSYFVVEFLQSASWGLASARKMDGTAVQGTSSVDSFLRNYKLGKTLGIGSFGKVKIAEHTLTGHKVAVKILNRRKIRNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSAGARDLIPRMLIVDPMKRMTIPEIRLHPWFQAHLPRYLAVPPPDTTQQAKKIDEEILQEVVKMGFDRNNLTESLRNRVQNEGTVAYYLLLDNRHRVSTGYLGAEFQESMEYGYNRINSNETAASPVGQRFPGIMDYQQAGARQFPIERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGQYNMKCRWVPSLPGHHEGMGVNSMHGNQFFGDDSSIIENDGATKLTNVVKFEVQLYKTREEKYLLDLQRLQGPQFLFLDLCAAFLAQLRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="114985" PGL_stop="116967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114985" e_stop="115268"/>
            <exon e_start="116871" e_stop="116967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.917" e_score="0.954"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="114985" e_stop="115268" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.917">
            <gDNA_intron_boundary i_start="115269" i_stop="116870" i_length="1602"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="116871" e_stop="116967" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114985" stop="115268"/>
              <exon start="116871" stop="116967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114991" stop="115268"/>
              <exon start="116871" stop="116967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTCAGAAATTACGTCAAATTACCATCTTATCCTTCTTCTTCTTCTTCCTCTCAATTCTCTCTGTTTTTCTTTTTTTTTTCAGAAAAAAATTTCCACAGAAACAAATCCAAAAGAGCTTGGATCCGACCCGTTTGGACCCATTTGCTCTTTCTAGTTTCTTCTCCTTTCTCTCTCTCTGTTTCTTGAAATTTTTTTCATTTTTTTTTCACAGAGAGGGAGACCTACATTCATTTATTATTATTATTGTTAATGGTGTTCTCTTCATTCAAAAAAACAAAAAG : GTATACATAATTTCGTGAGTCCAATCGAAATTTACATCTTTGCATGGTGTTCATCAGCAATTAGCAGACAGATTTGTGAGCTGAGTAGTAATAATGG</gDNA_template>
            <first_frame> T  L  R  N  Y  V  K  L  P  S  Y  P  S  S  S  S  S  S  Q  F  S  L  F  F  F  F  F  S  E  K  N  F  H  R  N  K  S  K  R  A  W  I  R  P  V  W  T  H  L  L  F  L  V  S  S  P  F  S  L  S  V  S  *  N  F  F  H  F  F  F  T  E  R  E  T  Y  I  H  L  L  L  L  L  L  M  V  F  S  S  F  K  K  T  K  R :   Y  T  *  F  R  E  S  N  R  N  L  H  L  C  M  V  F  I  S  N  *  Q  T  D  L  *  A  E  *  *  *  W </first_frame>
            <second_frame>  L  S  E  I  T  S  N  Y  H  L  I  L  L  L  L  L  P  L  N  S  L  C  F  S  F  F  F  Q  K  K  I  S  T  E  T  N  P  K  E  L  G  S  D  P  F  G  P  I  C  S  F  *  F  L  L  L  S  L  S  L  F  L  E  I  F  F  I  F  F  S  Q  R  G  R  P  T  F  I  Y  Y  Y  Y  C  *  W  C  S  L  H  S  K  K  Q  K   : G  I  H  N  F  V  S  P  I  E  I  Y  I  F  A  W  C  S  S  A  I  S  R  Q  I  C  E  L  S  S  N  N   </second_frame>
            <third_frame>   S  Q  K  L  R  Q  I  T  I  L  S  F  F  F  F  F  L  S  I  L  S  V  F  L  F  F  F  R  K  K  F  P  Q  K  Q  I  Q  K  S  L  D  P  T  R  L  D  P  F  A  L  S  S  F  F  S  F  L  S  L  C  F  L  K  F  F  S  F  F  F  H  R  E  G  D  L  H  S  F  I  I  I  I  V  N  G  V  L  F  I  Q  K  N  K  K  :  V  Y  I  I  S  *  V  Q  S  K  F  T  S  L  H  G  V  H  Q  Q  L  A  D  R  F  V  S  *  V  V  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114987" stop="115268"/>
                    <exon start="116871" stop="116888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQKLRQITILSFFFFFLSILSVFLFFFRKKFPQKQIQKSLDPTRLDPFALSSFFSFLSLCFLKFFSFFFHREGDLHSFIIIIVNGVLFIQKNKKVYIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="122374" PGL_stop="115709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122374" e_stop="121955"/>
            <exon e_start="117465" e_stop="117431"/>
            <exon e_start="115735" e_stop="115709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.953" e_score="0.998"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.852"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="122374" e_stop="121955" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="121954" i_stop="117466" i_length="4489"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="117465" e_stop="117431" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117430" i_stop="115736" i_length="1695"/>
          </intron>
          <exon e_serial="3" e_score="0.852">
            <gDNA_exon_boundary e_start="115735" e_stop="115709" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122374" stop="121955"/>
              <exon start="117465" stop="117431"/>
              <exon start="115735" stop="115709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122336" stop="121986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATGAGTATACAACCTTTTTCCGGTTCGTGAATGGTGTGGGCCCATTTCGAGCCGATTGTGACGGCCGGAGGCGGAGGAAGATCGTCGACGGTGTCGGGATTGACGACGGAGGAGCGATCTTCTGACCGGGAAGCTCGTTCGCCGGCGACTAAGCGTGCTCGAAATGATCGCCAGTCTGTTTCAGTGAAAGGCCTTTCTTCATCTTGAGGTGAAGGTGATGGCAATGGTGAACTTGCCTGGCAACCTACAAGTATCAAAATTTTCTTAATATATGTTTATCTGATCATCTTTTATAGCTTAATTTGAAAATTACCTGAAAATCTGTTTCATTTTACAGTATGTGCCAAAATTTATGTGATTCAAAATGTTTCATATATAAGCATTTAAATTCGTAATAATTATGGATTTGTGATTAGTA : AAAAGGCACCAGAACTAACATAACCACAATAAAAG : AAAAAAAAAGAAAAAAAAATTAACAAA</gDNA_template>
            <first_frame> R  *  V  Y  N  L  F  P  V  R  E  W  C  G  P  I  S  S  R  L  *  R  P  E  A  E  E  D  R  R  R  C  R  D  *  R  R  R  S  D  L  L  T  G  K  L  V  R  R  R  L  S  V  L  E  M  I  A  S  L  F  Q  *  K  A  F  L  H  L  E  V  K  V  M  A  M  V  N  L  P  G  N  L  Q  V  S  K  F  S  *  Y  M  F  I  *  S  S  F  I  A  *  F  E  N  Y  L  K  I  C  F  I  L  Q  Y  V  P  K  F  M  *  F  K  M  F  H  I  *  A  F  K  F  V  I  I  M  D  L  *  L  V  :  K  R  H  Q  N  *  H  N  H  N  K  R :   K  K  K  K  K  K  L  T   </first_frame>
            <second_frame>  D  E  Y  T  T  F  F  R  F  V  N  G  V  G  P  F  R  A  D  C  D  G  R  R  R  R  K  I  V  D  G  V  G  I  D  D  G  G  A  I  F  *  P  G  S  S  F  A  G  D  *  A  C  S  K  *  S  P  V  C  F  S  E  R  P  F  F  I  L  R  *  R  *  W  Q  W  *  T  C  L  A  T  Y  K  Y  Q  N  F  L  N  I  C  L  S  D  H  L  L  *  L  N  L  K  I  T  *  K  S  V  S  F  Y  S  M  C  Q  N  L  C  D  S  K  C  F  I  Y  K  H  L  N  S  *  *  L  W  I  C  D  *  * :   K  G  T  R  T  N  I  T  T  I  K   : E  K  K  R  K  K  N  *  Q  </second_frame>
            <third_frame>   M  S  I  Q  P  F  S  G  S  *  M  V  W  A  H  F  E  P  I  V  T  A  G  G  G  G  R  S  S  T  V  S  G  L  T  T  E  E  R  S  S  D  R  E  A  R  S  P  A  T  K  R  A  R  N  D  R  Q  S  V  S  V  K  G  L  S  S  S  *  G  E  G  D  G  N  G  E  L  A  W  Q  P  T  S  I  K  I  F  L  I  Y  V  Y  L  I  I  F  Y  S  L  I  *  K  L  P  E  N  L  F  H  F  T  V  C  A  K  I  Y  V  I  Q  N  V  S  Y  I  S  I  *  I  R  N  N  Y  G  F  V  I  S   : K  K  A  P  E  L  T  *  P  Q  *  K  :  K  K  K  E  K  K  I  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0025N15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="118594" PGL_stop="119855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118594" e_stop="118622"/>
            <exon e_start="118727" e_stop="118889"/>
            <exon e_start="118977" e_stop="119105"/>
            <exon e_start="119438" e_stop="119632"/>
            <exon e_start="119740" e_stop="119855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.960" e_score="0.995"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118594" e_stop="118622" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118623" i_stop="118726" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118727" e_stop="118889" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118890" i_stop="118976" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118977" e_stop="119105" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="119106" i_stop="119437" i_length="332"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="119438" e_stop="119632" e_length="195"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.960">
            <gDNA_intron_boundary i_start="119633" i_stop="119739" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="119740" e_stop="119855" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118594" stop="118622"/>
              <exon start="118727" stop="118889"/>
              <exon start="118977" stop="119105"/>
              <exon start="119438" stop="119632"/>
              <exon start="119740" stop="119855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAGCTCCGTGGTGATAGTTATTTCAA : AGATAAGAGGAAAGCCCCTGCTACAAATGTGTCACCTTATACTCCAATTGGGGTAGACTTATTTGTTTGCCCAAGAAAGATCAATCATATAGCACAACACATTGAGCTTCCTTCTATAAAAGGAGATGGAAGAATACCACCTTTACTAATTATTAACATTCAG : CTGCCAACTTATCCTGCTCCGATGTTCGTTGGTGATGCTGATGGAGAAGGCTTGAGCCTTGTAGTATATTTCAAACTTACTGAAACTTTTGAGGAGGACATCTCTCCCCAGTTTCAGGACACCATCAAG : AGATTCATCGAGGATGACATGGAAAAGGTGAAAGGTTTTGCAAAAGAATCAACTGTTCCTTTCAGAGAGAGGTTGAAGATTATGGTTGGGTTGGTTAATCCAGATGAGATTGTTACAAGTTCAACTGAAAGGAAGCTTTTGAATGCTTACAATGAAAAGCCTGTGCTTTCCCGCCCTCAACACAATTTTTATCAG : GGCCCGAATTACCTAGAAGTTGATCTTGACATTCATCGCTTCAGCTACATAGCAAGAAAGGGGCTCGATGCTTTTAGAGAACGTTTACGACATGGAATACTTGATTTTGGTCTAAC</gDNA_template>
            <first_frame> F  K  L  R  G  D  S  Y  F  K :   D  K  R  K  A  P  A  T  N  V  S  P  Y  T  P  I  G  V  D  L  F  V  C  P  R  K  I  N  H  I  A  Q  H  I  E  L  P  S  I  K  G  D  G  R  I  P  P  L  L  I  I  N  I  Q  :  L  P  T  Y  P  A  P  M  F  V  G  D  A  D  G  E  G  L  S  L  V  V  Y  F  K  L  T  E  T  F  E  E  D  I  S  P  Q  F  Q  D  T  I  K  :  R  F  I  E  D  D  M  E  K  V  K  G  F  A  K  E  S  T  V  P  F  R  E  R  L  K  I  M  V  G  L  V  N  P  D  E  I  V  T  S  S  T  E  R  K  L  L  N  A  Y  N  E  K  P  V  L  S  R  P  Q  H  N  F  Y  Q  :  G  P  N  Y  L  E  V  D  L  D  I  H  R  F  S  Y  I  A  R  K  G  L  D  A  F  R  E  R  L  R  H  G  I  L  D  F  G  L   </first_frame>
            <second_frame>  L  S  S  V  V  I  V  I  S   : K  I  R  G  K  P  L  L  Q  M  C  H  L  I  L  Q  L  G  *  T  Y  L  F  A  Q  E  R  S  I  I  *  H  N  T  L  S  F  L  L  *  K  E  M  E  E  Y  H  L  Y  *  L  L  T  F  S :   C  Q  L  I  L  L  R  C  S  L  V  M  L  M  E  K  A  *  A  L  *  Y  I  S  N  L  L  K  L  L  R  R  T  S  L  P  S  F  R  T  P  S  R :   D  S  S  R  M  T  W  K  R  *  K  V  L  Q  K  N  Q  L  F  L  S  E  R  G  *  R  L  W  L  G  W  L  I  Q  M  R  L  L  Q  V  Q  L  K  G  S  F  *  M  L  T  M  K  S  L  C  F  P  A  L  N  T  I  F  I  R :   A  R  I  T  *  K  L  I  L  T  F  I  A  S  A  T  *  Q  E  R  G  S  M  L  L  E  N  V  Y  D  M  E  Y  L  I  L  V  *  </second_frame>
            <third_frame>   *  A  P  W  *  *  L  F  Q  :  R  *  E  E  S  P  C  Y  K  C  V  T  L  Y  S  N  W  G  R  L  I  C  L  P  K  K  D  Q  S  Y  S  T  T  H  *  A  S  F  Y  K  R  R  W  K  N  T  T  F  T  N  Y  *  H  S   : A  A  N  L  S  C  S  D  V  R  W  *  C  *  W  R  R  L  E  P  C  S  I  F  Q  T  Y  *  N  F  *  G  G  H  L  S  P  V  S  G  H  H  Q   : E  I  H  R  G  *  H  G  K  G  E  R  F  C  K  R  I  N  C  S  F  Q  R  E  V  E  D  Y  G  W  V  G  *  S  R  *  D  C  Y  K  F  N  *  K  E  A  F  E  C  L  Q  *  K  A  C  A  F  P  P  S  T  Q  F  L  S   : G  P  E  L  P  R  S  *  S  *  H  S  S  L  Q  L  H  S  K  K  G  A  R  C  F  *  R  T  F  T  T  W  N  T  *  F  W  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118594" stop="118622"/>
                    <exon start="118727" stop="118889"/>
                    <exon start="118977" stop="119105"/>
                    <exon start="119438" stop="119632"/>
                    <exon start="119740" stop="119853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLRGDSYFKDKRKAPATNVSPYTPIGVDLFVCPRKINHIAQHIELPSIKGDGRIPPLLIINIQLPTYPAPMFVGDADGEGLSLVVYFKLTETFEEDISPQFQDTIKRFIEDDMEKVKGFAKESTVPFRERLKIMVGLVNPDEIVTSSTERKLLNAYNEKPVLSRPQHNFYQGPNYLEVDLDIHRFSYIARKGLDAFRERLRHGILDFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="121172" PGL_stop="123009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121172" e_stop="121432"/>
            <exon e_start="122129" e_stop="123009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.979"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="121172" e_stop="121432" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121433" i_stop="122128" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="122129" e_stop="123009" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121172" stop="121432"/>
              <exon start="122129" stop="122653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121175" stop="121432"/>
              <exon start="122129" stop="122439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121192" stop="121432"/>
              <exon start="122129" stop="122768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121225" stop="121432"/>
              <exon start="122129" stop="122685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121226" stop="121432"/>
              <exon start="122129" stop="122415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121227" stop="121432"/>
              <exon start="122129" stop="122409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121361" stop="121432"/>
              <exon start="122129" stop="122832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122160" stop="122415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122353" stop="123009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACTTAACCAATATATACACACTGATCAATTTCTTTTTATAGCAAGAATCTCTCTAAATCTGCAATTGCAGTACTATTTGGCTAATTAAGGCAAGACATTCTCTATTCAATATGGAAGCTTGCTTTGTCACTTCAAAGCCCCTCTCAGAGAAACTCTTCCCTTTGTTAGGATCAAGAGTTTCTTATTCTACAAGGAGGAGGTCATTTGTTAGTCAATTTCATCAGCCAAAAAAAGTTGGCAATCCTTTTTCAGTGACAT : GTTGCCAGGCAAGTTCACCATTGCCATCACCTTCACCTCAAGATGAAGAAAGGCCTTTCACTGAAACAGACTGGCGATCATTTCGAGCACGCTTAGTCGCCGGCGAACGAGCTTCCCGGTCAGAAGATCGCTCCTCCGTCGTCAATCCCGACACCGTCGACGATCTTCCTCCGCCTCCGGCCGTCACAATCGGCTCGAAATGGGCCCACACCATTCACGAACCGGAAAAAGGTTGTATACTCATCGCTACCGAAAAGCTGGATGGCGTTCACATATTTGAACGGACTGTAGTTCTGTTGTTGTCAATGGGCCCAATAGGCCCAATGGGCTTAATTTTAAACAGGCCTTCACTCATGTCCATTAAGGAAATGAAACCGTCGGTACTTGACATGTCGGGGACATTTGCTAATAGGCCATTGTTTTTTGGTGGGCCTTTAGAAGATGAGCTTTTCTTAGTAAGCCCAAATGAAGATGGGCTTGGAAAAAGTGGTGTTTTTGATGAAGTAATGAGAGGTTTGTACTATGGTACAAAAGAAAGTGTGGGATGTGCTTCTGAAATGGTGAAAAGGGATGTTGTTGGGGTTGATAATTTTAGGTTTTTTGATGGGTATTGTGCATGGGAAAAAGATCAATTGAAGGATGAGATTAGAGCTGGTTATTGGACTGTAGCTGCTTGTAGCCCAAGTGTAATTGGGCTTTCTGATGTGGGAAGTGTTGGGCTTTGGGATGAAGTTCTTGGGCTTATGACTCCAAAGAAAGTTTGGTGATGTGAATTTTTGAGTTTAGATTTGTGTTGTTGAAAGTAGAAGGCCCAAATTATTGTAAATTATTATGCATTGTTTTTTTTAACCAATTAAAAAGATAATGATATTATTGTCTAA</gDNA_template>
            <first_frame> S  T  *  P  I  Y  T  H  *  S  I  S  F  Y  S  K  N  L  S  K  S  A  I  A  V  L  F  G  *  L  R  Q  D  I  L  Y  S  I  W  K  L  A  L  S  L  Q  S  P  S  Q  R  N  S  S  L  C  *  D  Q  E  F  L  I  L  Q  G  G  G  H  L  L  V  N  F  I  S  Q  K  K  L  A  I  L  F  Q  *  H  :  V  A  R  Q  V  H  H  C  H  H  L  H  L  K  M  K  K  G  L  S  L  K  Q  T  G  D  H  F  E  H  A  *  S  P  A  N  E  L  P  G  Q  K  I  A  P  P  S  S  I  P  T  P  S  T  I  F  L  R  L  R  P  S  Q  S  A  R  N  G  P  T  P  F  T  N  R  K  K  V  V  Y  S  S  L  P  K  S  W  M  A  F  T  Y  L  N  G  L  *  F  C  C  C  Q  W  A  Q  *  A  Q  W  A  *  F  *  T  G  L  H  S  C  P  L  R  K  *  N  R  R  Y  L  T  C  R  G  H  L  L  I  G  H  C  F  L  V  G  L  *  K  M  S  F  S  *  *  A  Q  M  K  M  G  L  E  K  V  V  F  L  M  K  *  *  E  V  C  T  M  V  Q  K  K  V  W  D  V  L  L  K  W  *  K  G  M  L  L  G  L  I  I  L  G  F  L  M  G  I  V  H  G  K  K  I  N  *  R  M  R  L  E  L  V  I  G  L  *  L  L  V  A  Q  V  *  L  G  F  L  M  W  E  V  L  G  F  G  M  K  F  L  G  L  *  L  Q  R  K  F  G  D  V  N  F  *  V  *  I  C  V  V  E  S  R  R  P  K  L  L  *  I  I  M  H  C  F  F  *  P  I  K  K  I  M  I  L  L  S   </first_frame>
            <second_frame>  P  L  N  Q  Y  I  H  T  D  Q  F  L  F  I  A  R  I  S  L  N  L  Q  L  Q  Y  Y  L  A  N  *  G  K  T  F  S  I  Q  Y  G  S  L  L  C  H  F  K  A  P  L  R  E  T  L  P  F  V  R  I  K  S  F  L  F  Y  K  E  E  V  I  C  *  S  I  S  S  A  K  K  S  W  Q  S  F  F  S  D  M :   L  P  G  K  F  T  I  A  I  T  F  T  S  R  *  R  K  A  F  H  *  N  R  L  A  I  I  S  S  T  L  S  R  R  R  T  S  F  P  V  R  R  S  L  L  R  R  Q  S  R  H  R  R  R  S  S  S  A  S  G  R  H  N  R  L  E  M  G  P  H  H  S  R  T  G  K  R  L  Y  T  H  R  Y  R  K  A  G  W  R  S  H  I  *  T  D  C  S  S  V  V  V  N  G  P  N  R  P  N  G  L  N  F  K  Q  A  F  T  H  V  H  *  G  N  E  T  V  G  T  *  H  V  G  D  I  C  *  *  A  I  V  F  W  W  A  F  R  R  *  A  F  L  S  K  P  K  *  R  W  A  W  K  K  W  C  F  *  *  S  N  E  R  F  V  L  W  Y  K  R  K  C  G  M  C  F  *  N  G  E  K  G  C  C  W  G  *  *  F  *  V  F  *  W  V  L  C  M  G  K  R  S  I  E  G  *  D  *  S  W  L  L  D  C  S  C  L  *  P  K  C  N  W  A  F  *  C  G  K  C  W  A  L  G  *  S  S  W  A  Y  D  S  K  E  S  L  V  M  *  I  F  E  F  R  F  V  L  L  K  V  E  G  P  N  Y  C  K  L  L  C  I  V  F  F  N  Q  L  K  R  *  *  Y  Y  C  L  </second_frame>
            <third_frame>   H  L  T  N  I  Y  T  L  I  N  F  F  L  *  Q  E  S  L  *  I  C  N  C  S  T  I  W  L  I  K  A  R  H  S  L  F  N  M  E  A  C  F  V  T  S  K  P  L  S  E  K  L  F  P  L  L  G  S  R  V  S  Y  S  T  R  R  R  S  F  V  S  Q  F  H  Q  P  K  K  V  G  N  P  F  S  V  T   : C  C  Q  A  S  S  P  L  P  S  P  S  P  Q  D  E  E  R  P  F  T  E  T  D  W  R  S  F  R  A  R  L  V  A  G  E  R  A  S  R  S  E  D  R  S  S  V  V  N  P  D  T  V  D  D  L  P  P  P  P  A  V  T  I  G  S  K  W  A  H  T  I  H  E  P  E  K  G  C  I  L  I  A  T  E  K  L  D  G  V  H  I  F  E  R  T  V  V  L  L  L  S  M  G  P  I  G  P  M  G  L  I  L  N  R  P  S  L  M  S  I  K  E  M  K  P  S  V  L  D  M  S  G  T  F  A  N  R  P  L  F  F  G  G  P  L  E  D  E  L  F  L  V  S  P  N  E  D  G  L  G  K  S  G  V  F  D  E  V  M  R  G  L  Y  Y  G  T  K  E  S  V  G  C  A  S  E  M  V  K  R  D  V  V  G  V  D  N  F  R  F  F  D  G  Y  C  A  W  E  K  D  Q  L  K  D  E  I  R  A  G  Y  W  T  V  A  A  C  S  P  S  V  I  G  L  S  D  V  G  S  V  G  L  W  D  E  V  L  G  L  M  T  P  K  K  V  W  *  C  E  F  L  S  L  D  L  C  C  *  K  *  K  A  Q  I  I  V  N  Y  Y  A  L  F  F  L  T  N  *  K  D  N  D  I  I  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0025N15.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121231" stop="121432"/>
                    <exon start="122129" stop="122895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICNCSTIWLIKARHSLFNMEACFVTSKPLSEKLFPLLGSRVSYSTRRRSFVSQFHQPKKVGNPFSVTCCQASSPLPSPSPQDEERPFTETDWRSFRARLVAGERASRSEDRSSVVNPDTVDDLPPPPAVTIGSKWAHTIHEPEKGCILIATEKLDGVHIFERTVVLLLSMGPIGPMGLILNRPSLMSIKEMKPSVLDMSGTFANRPLFFGGPLEDELFLVSPNEDGLGKSGVFDEVMRGLYYGTKESVGCASEMVKRDVVGVDNFRFFDGYCAWEKDQLKDEIRAGYWTVAACSPSVIGLSDVGSVGLWDEVLGLMTPKKVW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="124649" PGL_stop="123848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124649" e_stop="123848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="124649" e_stop="123848" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124649" stop="123848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATAATACCAATGTTGAGAATGTGAAGAAGGCTGCTGTCATTCATTACAATGGTCAATCGAAGCCTTGGCTTGAAATAGGATTTGAGCATCTCCGGCCTTTTTGGACCAAGTATGTTAACAGCACCAATGATTTCATTAAGAACTGTCACATATTGGAGTAGTGTACGTGTTATGCTGCAAGGACAATACGCAGGATAGAAATTCAAATGGCATAGGCTTTGCTGAATATTTGCTAGGGAACTTAAAATCGAATCGAGAAGGAGATTCTGATACTTGACAGAATTGGCTGGGATATATATTCAGGTATGGGATGTGTGCTACTTTGACTCACTTCTATGAAGAGTACCTGTGATACTAGCATGGATATGAGATTCGTTCTTCCCATTTGTAAAATAAAAATTCGTTGCCTAGCTTGTTGATGTGACAAAAGTACACATTATATCTGCACTTTAGATGGATGTAGTATACATTTGGCTCTCACTGTTACCATCAGTGATACAAAATCGGGACATAACGAGAAGAAAAGCTAGGATGTGGCGCTCACTTTTGGCTATACATTTGGCTCCATTAGAGGTTGAGATGATTCTTTTGGCTTCATTTCATTATTTTTTTACCTAGTCAGTTTGATCGCCATCGCCCTTGTTGTTTTCTCAATATCTTGTCATTTTAGACAGTAGATTATAGAAAATTTTAAGTCCCTTGTTAATGAACTGTGTAGGTTATACATATTGGTACTTTTTTGTATGATCAAGAGTAATTATAGACAAGCTCAGATTATTATTATTTTTTTTTATCAAA</gDNA_template>
            <first_frame> Q  N  N  T  N  V  E  N  V  K  K  A  A  V  I  H  Y  N  G  Q  S  K  P  W  L  E  I  G  F  E  H  L  R  P  F  W  T  K  Y  V  N  S  T  N  D  F  I  K  N  C  H  I  L  E  *  C  T  C  Y  A  A  R  T  I  R  R  I  E  I  Q  M  A  *  A  L  L  N  I  C  *  G  T  *  N  R  I  E  K  E  I  L  I  L  D  R  I  G  W  D  I  Y  S  G  M  G  C  V  L  L  *  L  T  S  M  K  S  T  C  D  T  S  M  D  M  R  F  V  L  P  I  C  K  I  K  I  R  C  L  A  C  *  C  D  K  S  T  H  Y  I  C  T  L  D  G  C  S  I  H  L  A  L  T  V  T  I  S  D  T  K  S  G  H  N  E  K  K  S  *  D  V  A  L  T  F  G  Y  T  F  G  S  I  R  G  *  D  D  S  F  G  F  I  S  L  F  F  Y  L  V  S  L  I  A  I  A  L  V  V  F  S  I  S  C  H  F  R  Q  *  I  I  E  N  F  K  S  L  V  N  E  L  C  R  L  Y  I  L  V  L  F  C  M  I  K  S  N  Y  R  Q  A  Q  I  I  I  I  F  F  Y  Q  </first_frame>
            <second_frame>  R  I  I  P  M  L  R  M  *  R  R  L  L  S  F  I  T  M  V  N  R  S  L  G  L  K  *  D  L  S  I  S  G  L  F  G  P  S  M  L  T  A  P  M  I  S  L  R  T  V  T  Y  W  S  S  V  R  V  M  L  Q  G  Q  Y  A  G  *  K  F  K  W  H  R  L  C  *  I  F  A  R  E  L  K  I  E  S  R  R  R  F  *  Y  L  T  E  L  A  G  I  Y  I  Q  V  W  D  V  C  Y  F  D  S  L  L  *  R  V  P  V  I  L  A  W  I  *  D  S  F  F  P  F  V  K  *  K  F  V  A  *  L  V  D  V  T  K  V  H  I  I  S  A  L  *  M  D  V  V  Y  I  W  L  S  L  L  P  S  V  I  Q  N  R  D  I  T  R  R  K  A  R  M  W  R  S  L  L  A  I  H  L  A  P  L  E  V  E  M  I  L  L  A  S  F  H  Y  F  F  T  *  S  V  *  S  P  S  P  L  L  F  S  Q  Y  L  V  I  L  D  S  R  L  *  K  I  L  S  P  L  L  M  N  C  V  G  Y  T  Y  W  Y  F  F  V  *  S  R  V  I  I  D  K  L  R  L  L  L  F  F  F  I  K </second_frame>
            <third_frame>   E  *  Y  Q  C  *  E  C  E  E  G  C  C  H  S  L  Q  W  S  I  E  A  L  A  *  N  R  I  *  A  S  P  A  F  L  D  Q  V  C  *  Q  H  Q  *  F  H  *  E  L  S  H  I  G  V  V  Y  V  L  C  C  K  D  N  T  Q  D  R  N  S  N  G  I  G  F  A  E  Y  L  L  G  N  L  K  S  N  R  E  G  D  S  D  T  *  Q  N  W  L  G  Y  I  F  R  Y  G  M  C  A  T  L  T  H  F  Y  E  E  Y  L  *  Y  *  H  G  Y  E  I  R  S  S  H  L  *  N  K  N  S  L  P  S  L  L  M  *  Q  K  Y  T  L  Y  L  H  F  R  W  M  *  Y  T  F  G  S  H  C  Y  H  Q  *  Y  K  I  G  T  *  R  E  E  K  L  G  C  G  A  H  F  W  L  Y  I  W  L  H  *  R  L  R  *  F  F  W  L  H  F  I  I  F  L  P  S  Q  F  D  R  H  R  P  C  C  F  L  N  I  L  S  F  *  T  V  D  Y  R  K  F  *  V  P  C  *  *  T  V  *  V  I  H  I  G  T  F  L  Y  D  Q  E  *  L  *  T  S  S  D  Y  Y  Y  F  F  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0025N15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 354024 bytes spliced alignments in total
$ 67 spliced alignments have been stored
$ 5283 bytes was the average size of a spliced alignment
$ 28576 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1587 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 94 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:51
-->
