<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:07:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555628" ref_strand="+" ref_description="SGN-E555628 [cTSC-6-H22]">
      <seq>cttatgtcttttaggcagttagcgccgagcagactatgactccaccataatcttctcttgcgttttttgaacggctaattacatggtaagagaatacaatagaatgaaacaaatactgagaggtttatgacatggtgctgggaaaatatgcagcttttcctcacagcatattagccatttaattctgtatctcagattgtttaatgtatttgttattttcccatgaagttgtaacctacaagttactgtttttttatttcattactcatatacttgtagagattcttctttgtgcactatgtaacatcaaatgtaataaaatcctgattcatcgaaactgaatgatcatgaagttgaatattgtagtgcacctatttcacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggggggaaaaaaaaaaaccaaaaaaaaanggggggggggggccccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="106966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="2043" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2044" i_stop="2106" i_length="63">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2107" g_stop="2142" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="417" r_length="36" r_score="0.444"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2143" i_stop="2726" i_length="584">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2727" g_stop="2776" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="467" r_length="50" r_score="0.420"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2777" i_stop="2897" i_length="121">
            <donor d_prob="0.789" d_score="0.42"/>
            <acceptor a_prob="0.558" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2898" g_stop="2910" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="480" r_length="13" r_score="0.385"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E555628" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="2043"/>
          <exon e_start="2107" e_stop="2142"/>
          <exon e_start="2727" e_stop="2776"/>
          <exon e_start="2898" e_stop="2910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCACAATTTTTGTTATTTCTTGCTTATTAGGCATTGCTAATCAACACTGAAGCTCATCGTTGTTGCAGGAAGTCAAATGAAATAACTGAACCATGAAGGATTCTGTGTTGAGAACCATACATCTGATTAGTAGTTACTTTTGAAATATCATGCCTAGTAGATTCCATCATTTTAGCATATAGAACACTACTTTAGTAGGACGGAAACTGCTCTGGCGATATAGTAAGTGCCAGTAGCTTTTACAAATTATTATTCATAGGTTATGTTTACAGGAAGAAAGAACTTCTGATGATGTGTGTAAACATCTTAAAAACTTGAGATCATATCTGTTAGATTTTTGCCAAGTCTGCTCTCACCTCAAGCCATGACAACATGGTATTGAAAACAAGCTCCACACTTTCATTTGGTTCGCCTATCAGTTGATGCCACATCTCCGGGTAAATATTTATAGCCTTATCCTTACTTCCTGCCGATTTATACACAAGTTTAGCAGCTTCAGGATCACATACCTTATCTTCCCCACCTTGAAGAATCAGCAAAGGGACTTGTAGTTCATGAGAGTTCCTCTGTATATACTCACAGACTTTCAGAAGCTCTAGTGCAGTGGCAGCTGGTGGCTTCTCGGAAGCCAGGCGATTTGGACTTTTTGAGATAATCTTTCTCTTCCACTCCTCTTTGTATGATATAGATGCAGGTGGTTTGGTGATCACAATCCTCCATGATGGAGCTATGAAGGCGGCCAACGGTAGTAGCTTCTCCAGTGGCCAAACAGGTCTGTATTTCTTTGACACTCCAAACATCGGTCCACTTAACATCAGACCATTCCATACATTCTTTTGCCTTAGACATATGAGTGTAGAAATTGCACCACC</genome_strand>
        <mrna_strand>CTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCACA...............................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGGGGGGGGGGGAAAAAAAAAAACCAAAAAAAAANGGGGGGGGGG.........................................................................................................................GGCCCCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252723" ref_strand="+" ref_description="SGN-E252723 [cLEG-16-M22]">
      <seq>tgacaagagaagagttttacaagcaacataaaatcatgcacaaacaaagtttcatgttaaacaaacaaaacatgaagatattcacacaatcttggcagcctgaatcaagtaatcagttaagaggtcttgtaggcatgattcatggttatacgtccgaaagcagttggctttttgagctaaatgcagtagctatggtgaaagctggatttttcgtttgttctcttgacctacaaggtcacggttactcagaaggctcacctggttacataccgtgtattcaacctttagtccaagactgtatacagtactttgactctgctcgtgctgatcacccgaatctccctgctttcctgtatggtgagtcattaggtggtgcaatttctacactcatatgtctaaggcaaaagaatgtatggaatggtctgatgttaagtggaccgatgtttggagtgtcaaagaaatacagacctgtttggccactggagaagctactaccgttggccgccttcatagctccatcatggaggattgtgatcaccaaaccacctgcatctatatcatacaaagaggagtggaagagaaagattatctcaaaaagtccaaatcgcctggcttctgagaagccaccagctgccactgcactagagcttctgaaagtctgtgagtatatacagaggaactctcatgaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="3578" stop="2286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3278" g_stop="2586" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E252723" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3278" e_stop="2586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</genome_strand>
        <mrna_strand>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCTGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321644" ref_strand="+" ref_description="SGN-E321644 [cTOB-25-B4]">
      <seq>gagattcgggtgatcagcacgagcagagtcaaagtactgtatacagtcttggactaaaggttgaatacacggtatgtaaccaggtgagccttctgagtaaccgtgaccttgtaggtcaagagaacaaacgaaaaatccagctttcaccatagctactgcatttagctcaaaaagccaactgctttcggacgtataaccatgaatcatgcctacaagacctcttaactgattacttgattcaggctgccaagattgtgtgaatatcttcatgttttgtttgtttaacatgaaactttgtttgtgcatgattttatgttgcttgtaaaactcttctcttgtcaagttaccataagggctgttctcattagattggaaaattgggtgagacattgtaatgactgagtttgtctgtttgtgttttgtgtttgtgtttgttgatatatacacacaaatgtgcattatgatatatctatgttgttcaagagactgataggggttgggagtttagcctcccaactgtttcatgctggggtaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="2638" stop="3783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2938" g_stop="3483" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E321644" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2938" e_stop="3483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTGTTTGTGTTTTGTGTTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAGTACTGATA-GGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</genome_strand>
        <mrna_strand>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTG-TT-TG---TGT-TTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAG-ACTGATAGGGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340990" ref_strand="+" ref_description="SGN-E340990 [cTOF-5-J19]">
      <seq>attatggagattcttaagctgatcaaaagggaattaactggagagtctaccaagctagtaaaatcatctcctgcttaagataaagagtctaattcccggtgttttttcattccaatcctgctggtcctagtttgaagttcaacacgatgctagaaaaacagattttagttcagcgggacagacgacatgtagtttgtagcaacttgaaatagcacaaagttcttgaagtttcaactgacctgtcttgtagagggtgagatcctagttagttctgtatattgtgtatcatcatcagacaggaaaatccccacatcttagttgcagctgtgaaattttaggtacattttgtcagctttcttgtatatagagaatcaaaatgtacagcctactttaggctagtttagttttatggaaatccatgtgtttatcatttttctttattgaataattcaattctggaaaaaaaaaanaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="9176" stop="7079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8876" g_stop="8798" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8797" i_stop="7760" i_length="1038">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7759" g_stop="7379" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="461" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E340990" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8876" e_stop="8798"/>
          <exon e_start="7759" e_stop="7379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAGGTAATTTTTCTTCTACTAAAGTATAGTTTTCACTTTTCAGTGGGTGATATTGCGTAAAATTTGGTTCCATTGTTGTTAGCTAGATCAGCCTCTTAAGACAGACCTTTATGAGAATCTAACTATTGGTATTTTTCTTGAATACTAAATTGATGTTAGTTACTTTCTCTATTCTAATTAAGTAGCACTTTTTCTTTTTAATTTGTTCTAAAATGAATGACACCTTTTTATATCTGCTTCTCATTTTGCCTTTAGTGACATGGTCTTGTACCCAAAGAAATGTCAAGGCATGTTTATGTCCCCCGCCAAGTTGTAACGGTACTTTTGGTATATGTGCTAACGGTCTTTCTGAGTTTCATAAACTCCAGACCAAGTCAAACGTTGCCAGCTAAAATGAATAGAGGGAGTAATGAAAACATTTGCGGAAAAACTGTCACCTACTCAAGAAGAGGGGAACTAAGGACAGCAAATTAACTGCTTTGTATAACCATGCACCATTATTCCTCAGGCATTTCTCTAACAAAGAAAAGAAACTGAAAAGGGGAGGAAAATAGATGAGTTGACAAAAAAAATTAAAGGTTGAGAAAACTAGGGCTGATGAAGAAAGGTGTGATCTTTAAAGGATTAGGGCGGAGGAAAAAAAGGTTGCTTTTGTAAATTCTAAAGAGGAATCAGAAAATGAAAAAAAATCAAAGGTGGAGTTGGTGAAATCGGAGTATGAAATAAGCTGCTGGTGGTAGAAAGAGGGGACACATAAGAGAAAAGACGTGAAACTCACCCGTGGCTTTTAGAACAAAAGGATCTTGCAGAGCTAACTGCAAAATAGCTATTGATAAGAAAAGTGTCATGCTGCAGATTTTTTCATGGCAGTTAAACAAGATAAAAATTGGAAACATCACAAAAAACAGAAGTATAAAATAACAGGTGCAGTAGCTTGTAATCATGCCTACTGCAAGACATCAGAACATATCTCAGGTTTTACTTAAACTGTACCTTCCATAAATCAACCAGTCCTTGACTCTTGTTTCTTTTGTTGAACAGATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCGGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAG--TTATGGAAATCCATGTGTTTATCATTTTTCTTTTATTGAATAATTCAATTCTGGAA</genome_strand>
        <mrna_strand>ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCAGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAGTTTTATGGAAATCCATGTGTTTATCATTTTTC-TTTATTGAATAATTCAATTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746666" ref_strand="+" ref_description="SGN-E746666 [GI|60419096]">
      <seq>ggaaaatgagaatttgggtgatgagattttggaggattttgaaacatactgggaagatgttaatgaccgcttaatggtatcaaggatggtaagtgactcagtgattaaggggatagtgagtgcggtggaacaagaggcagctgagagactagtgactaaggatatggaattagccaacttgaaggaatatttgcaatttcatgaagggggtcttagcaaaactgaacttgaatcttttgggtcacttatgtcgcagaatgagctagaaagcatggattttcgaaaatgtatgactttatcagatgtttttatggagcatggtaagatgggagagtttctagatgggctaagaagtttggcgaaagatgaattcaagaagttgaagaagagtattgatgagctcagaggatccaattctgttagtaacaagatctctcgctctgagatggcgaaactagaaggtattctacaggagaaagaatctggaatttgggttcagttggacaaaacactagacaacataagaatgatggtggacaccgtctttaaacgtatggatgttatgctacagttgtccaagacatcacttcatcactggcaggaggaacatctaatcaaagtggagcttgagtccatggtaatgcagtgtgtaattcggaccgtgcaagaagaatttgagtacaaactgtgggaccagtatgctcaattatgtggtgaccgaaatgagaagttgaatgccatctctagtttacggacggagttggatgctgttttgaagtcattgtcaagttcagaaaatgggcatgtgacttcccatggatcgcatgatgcagatttctttacacgcaagaaatcaagtgagtacgtgacttctaccaaatcagtttgggatggaaatggaaagctggaggattctaagactgatatacctgagaattttgatgctgtcacgttgaagcacatgtcaaaagatgaaatggtgacctattttaataatataatgacaaagatgaagagacaccatgagtccattctgcaaaagaaaaccgatgaatattttgttctaagggcagagtatttaaatcttagaggtggctctgttgtgcctcataaaaaggataagggtgaatctgacattctaaggaagaagattccagaaattatattcaaattggatgatattctggtagagaatgaaaaacatcctgcatttacccaggagactctaagtttcggtaacttaaaggataggcttgataaccttctttctgaaaatcaccagcttagagacttggttaaagaaaagaaaaatgaagttaagtcccttttgtcccaagtttcagatgccactgagaagaggctgcaacattctttggcagaagcaggcatgctaaaacagataggagaactcaatttagccatggaagagtcactgataggaggttctgtaagggaagacgtgtatacctgttttctaagagatctcagtggcggggcaagaaatgaagttgaggagttaaacttgggatttaatatgattaatgaaagtaatgatactagtgctggaagtaccagaaaaattgaaattgaagatttagagatggagtgcctgattatgcaagaaatttgtggagtgatttccggtgaaggcattaaggaggctaaagatatgcttaaggaactgtatttggagcatttgaatgaaaaagaaattcgaacttctcttgatacaaaacttattgagatggaaaacaaattaaaattcgaggttgaagagaaggacagactgatgcagatggaaaagttagtgaacgagaaggagaagttagcaacagatgcatcagctgctctagcaaaagagagggttcagtctgagcaggttcgtcaagagttgaatgctgcgaaagaatttgcaagtcaacaacaaacattagcttctgggtgcaacaaagaagtaaatgtaataaagggccagttggcagaagcagtggagcgaattgaagtactgaaagaggaggtagcccaattaaatataagtcttgaggagaagactgaggagttaaaagaagctaatcacagggcaaatatggtccttgctatttctgaagagaggcaaactcttttgtcctctcttgaatcaaaagaaatagcgctaagaaagcaggtggaaaaaataattggtaatataaatgaatcgtcaaaaatgattgctgattttgaatgcagggtgacaggaaggttgaaaacaaataatgcaaggtttgagcactcgttttctcaaatggattgtcttgttaagaaggccaatttgctgagaagaacaacactactgtatcaacaaaggcttgaaaaacgatgttcagaccttaaattggctgaggctgaggttgatcttttgggagatgaggtggatacacttctaagcctagttgagaagatttacatagcgcttgatcattactcgccagttttacagcattatcctggggattatggagattcttaagctgatcaaaagggaattaactggagagtctaccaagctagtaaaatcatctcctgcttaagataaagagtctaattcccggtgttttttcattccaatcctgctggtcctagtttgaagttcaacacgatgctagaaaaacagattttagttcagcgggacagacgacatgtagtttgtagcaacttgaaatagcacaaagttcttgaagtttcaactgacctgtcttgtagagggtgagatcctagttagttctgtatattgtgtatcatcatcagacaggaaaatccccacatcttagttgcagctgtgaaattttaggtacattttgtcagctttcttgtatatagagaatcaaaatgtacagcctactttaggctagtttagttttatggaaatccatgtgtttatcatttttcttttaaaagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="14315" stop="7100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14015" g_stop="11757" g_length="2259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2259" r_length="2259" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11756" i_stop="9915" i_length="1842">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9914" g_stop="9788" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="2260" r_stop="2386" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9787" i_stop="9409" i_length="379">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9408" g_stop="9307" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="2387" r_stop="2488" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9306" i_stop="8877" i_length="430">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8876" g_stop="8798" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="2489" r_stop="2568" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8797" i_stop="7760" i_length="1038">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7759" g_stop="7401" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="2569" r_stop="2929" r_length="361" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2930" polyA_stop="2953"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E746666" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2926</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14015" e_stop="11757"/>
          <exon e_start="9914" e_stop="9788"/>
          <exon e_start="9408" e_stop="9307"/>
          <exon e_start="8876" e_stop="8798"/>
          <exon e_start="7759" e_stop="7401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATGAGAATTTGGGTGATGAGATTTTGGAGGATTTTGAAACATACTGGGAAGATGTTAATGACCGCTTAATGGTATCAAGGATGGTAAGTGACTCAGTGATTAAGGGGATAGTGAGTGCGGTGGAACAAGAGGCAGCTGAGAGACTAGTGACTAAGGATATGGAATTAGCCAACTTGAAGGAATATTTGCAATTTCATGAAGGGGGTCTTAGCAAAACTGAACTTGAATCTTTTGGGTCACTTATGTCGCAGAATGAGCTAGAAAGCATGGATTTTCGAAAATGTATGACTTTATCAGATGTTTTTATGGAGCATGGTAAGATGGGAGAGTTTCTAGATGGGCTAAGAAGTTTGGCGAAAGATGAATTCAAGAAGTTGAAGAAGAGTATTGATGAGCTCAGAGGATCCAATTCTGTTAGTAACAAGATCTCTCGCTCTGAGATGGCGAAACTAGAAGGTATTCTACAGGAGAAAGAATCTGGAATTTGGGTTCAGTTGGACAAAACACTAGACAACATAAGAATGATGGTGGACACCGTCTTTAAACGTATGGATGTTATGCTACAGTTGTCCAAGACATCACTTCATCACTGGCAGGAGGAACATCTAATCAAAGTGGAGCTTGAGTCCATGGTAATGCGGTGTGTAATTCGGACCGTGCAAGAAGAATTTGAGTACAAACTGTGGGACCAGTATGCTCAATTATGTGGTGACCGAAATGAGAAGTTGAATGCCATCTCTAGTTTACGGACGGAGTTGGATGCTGTTTTGAAGTCATTGTCAAGTTCAGAAAATGGGCATGTGACTTCCCATGGATCGCATGATGCAGATTTCTTTACACGCAAGAAATCAAGTGAGTACGTGACTTCTACAAAATCAGTTTGGGATGGAAATGGAAAGCTGGAGGATTCTAAGACTGATATACCTGAGAATTTTGATGCTGTCACGTTGAAGCACATGTCAAAAGATGAAATGGTGACCTATTTTAATAATATAATGACAAAGATGAAGAGACACCATGAGTCCATTCTGCAAAAGAAAACCGATGAATATTTTGTTCTAAGGGCAGAGTATTTAAATCTTAGAGGAGGCTCTGTTGTGCCTCATAAAAAGGATAAGGGTGAATCTGACATTCTAAGGAAGAAGATTCCAGAAATTATATTCAAATTGGATGATATTCTGGTAGAGAATGAAAAACATCCTGCATTTACCCAGGAGACTCTAAGTTTCGGTAACTTAAAGGATAGGCTTGATAACCTTCTTTCTGAAAATCACCAGCTTAGAGACTTGGTTAAAGAAAAGAAAAATGAAGTTAAGTCCCTTTTGTCCCAAGTTTCAGATGCCACTGAGAAGAGGCTGCAACATTCTTTGGCAGAAGCAGGCATGCTAAAACAGATAGGAGAACTCAATTTAGCCATGGAAGAGTCACTGATAGGAGGTTCTGTAAGGGAAGACGTGTATACCTGTTTTCTAAGAGATCTCAGTGGCGGGGCAAGAAATGAAGTTGAGGAGTTAAACTTGGGATTTAATATGATTAATGAAAGTAATGATACTAGTGCTGGAAGTACCAGAAAAATTGAAATTGAAGATTTAGAGATGGAGTGCCTGATTATGCAAGAAATTTGTGGAGTGATTTCCGGTGAAGGCATTAAGGAGGCTAAAGATATGCTTAAGGAACTGTATTTGGAGCATTTGAATGAAAAAGAAATTCGAACTTCTCTTGATACAAAACTTATTGAGATGGAAAACAAATTAAAATTCGAGGTTGAAGAGAAGGACAGACTGATGCAGATGGAAAAGTTAGTGAACGAGAAGGAGAAGTTAGCAACAGATGCATCAGCTGCTCTAGCAAAAGAGAGGGTTCAGTCTGAGCAGGTTCGTCAAGAGTTGAATGCTGCGAAAGAATTTGCAAGTCAACAACAAACATTAGCTTCTGGGTGCAACAAAGAAGTAAATGTAATAAAGGGCCAGTTGGCAGAAGCAGTGGAGCGAATTGAAGTACTGAAAGAGGAGGTAGCCCAATTAAATATAAGTCTTGAGGAGAAGACTGAGGAGTTAAAAGAAGCTAATCACAGGGCAAATATGGTCCTTGCTATTTCTGAAGAGAGGCAAACTCTTTTGTCCTCTCTTGAATCAAAAGAAATAGCGCTAAGAAAGCAGGTGGAAAAAATAATTGGTAATATAAATGAATCGTCAAAAATGATTGCTGATTTTGAATGCAGGGTGACAGGAAGGTTGAAAACAAATAATGCAAGGTTTGTGCTTTCGTTTCTTTTTCGATAAGTAATTGGAATATCATAGTGCCAAAATGTACATAAAAAAGGATTTTTTTACCCTTCAAATATGCAGAAAATATAAGATGTCAATAAAAGGCTTTTCAGCCCAAAGGAACTGCAAATCACACCAAGAACATAACATTTGTAGGACTCTACTTTCTAAAACAAACACTAATATGGACTTCTTTTCTGAATGCTTGCTGTTCTGTTCTTTCCATAAGGACCTTAAAATACATAAAAAGACACTATTCTAGTGGCATTTATACTTTTCCATTTGCAGCGGAACATTCCTGTAAATTTGTGGTATTGTTCCCTTTCTTCTTCTCAACATGTAGCTATCTGCTCCCTTGTGTTAACTTTTTCTTTCAAACAGGAGCCCAAATCTCATGTACCTAACAAGTCAATGGTACTGGTGTATATATAAGTCTAGAGTTGTGTCAATTTTTTTCCTTTTCTCCCTCCTCTTTTCTACATTGCTAGTGCCCCTTCTCCCCCATCCCTTACAAAAGCATTTATGGACCCATGCCTTCTTCTCCTTTCTCTTTCCCAACAAAAATGGCTTCCATCCCATCCTGAGGAAACAATGATCTAGATCCGGTACTTCTTTTGTTTTTTCCTCCAATTACAACCAGCAGAGGCATACACCAGTAATTAAAGATGGGGATGTTGGGAGAAAGTTGTGCGCATGCCAATGGGGATGAAGACCACAAAAGAGAGAGAAAAGCTAGAATGAAGGTTCACTTTCCTTAACAAAGCAATCTGGGGCTGCTATTTACTTTAGGAGTAGACAAAGCAAATCGAAAGCTTATTTACTCTTACTTTAACTTTCCCCAACCAATCAAAACATTCCACAACGTAAACCAGATACAAGTATACAACTAAGCCAAAGGCATTTATCAAATAATTACTAAAGTAAGAAATTCCTATAGGGAGCGGCAGTCAGAGGGAGTGGTACTTTTAAGACATGAAATTGAGAAGGAAGAAGGTGAAGAAAATGAAAACAAGATAAAAGAAAGGAATAGAGAGAGATTACAAAATTTGATGGTTTTCTAACAACTAACAAGTGACTGATGTGCACTTAGTATGGAATAAGGGTTTAATGCCAGAAAAACTAGTTAAGGGATTAATTTTACAGATTTAATAGCTGAGGCCATGTTAAACTTTCATCTTTTCCCTTTTACTTTTCTTGTATTGACCTGCATATTTTCTTATTTGAAAGAAGATTTAGTATTGACCTGCATATTTTCCTATGGGAAAAAAGATTTAGTTTTTGGTGTCACTGTATCCATGGTATTGGAGATTTCGTTCTTGTTGACCTATTAACTGACTATATCCTTCTACCTTATCATTTCTTTTCATATTTGCGCAATCGGAAGTTGTATGGACTATGGTGAAACTCTCCTTTGCTTTTAATCAACTTTTTCCAATAATTGAGTTTTCTGTCTGCCAAAAGATGAAAAAGAATTTGCTTTATCTATTTTTTCAGCCAACAAAGCCTCCTTAGTTGATATTGTTGTGTGTGTGCGCGCATCTTTTCAAATAATATAATAGCTGTGGTGTATTGGTTGTTCAATCCCCATTCCCCTCCATTTTTGTTTCTGAAGTATTGGTAGTGTTTTGACTTGCCATCACTTTTCTAGGCATTGGCGTAATCATTCTGTTTGTAGGGGATATAGGGAGAAAGATGTGTTAACATTTTTGTTTTAACTGGTATACAAATACACGCTCAAAGCTTGTTCTGCTTAGAAGACGTGACTCTTGCGGAGTTTACATTGATTATCCTCACTCAGACCTAATGCAATTTGTTGGTAATACTTTCAGGTTTGAGCACTCGTTTTCTCAAATGGATTGTCTTGTTAAGAAGGCCAATTTGCTGAGAAGAACAACACTACTGTATCAACAAAGGCTTGAAAAACGATGTTCAGACCTTAAATTGGCTGAGGCTGAGGCAATTACACAGAATTCATCTTTCTTTATATTTCTGTTTTTGCAGATAATTAGCAATTAACTATATGCAATATTTTTAATTGGGACTTGGGCTTTTTACCTAGAGTTGGATCCGTGATTTGAACCTGATGAGTTTGATCTGTAAAGTTGTTATCACCGAACTCACTTTACTTTTGAAATTATGGGTCATTGTCTATTTTGTTGAAATTTGTAATTTTTCGCTTATATATGTGTTCTGGGGTCAGTTCAACTTCAATCCATAGCTCAATTGCTACAGCCACCACCTTTTTAACCTATTGCCCAAAATTGCATCATGCTTTAACTTTTTGATGTTTTACTACGGTTTACGAAGTTTTTCAGAGGATTTCTTGTACATTCAGGTTGATCTTTTGGGAGATGAGGTGGATACACTTCTAAGCCTAGTTGAGAAGATTTACATAGCGCTTGATCATTACTCGCCAGTTTTACAGCATTATCCTGGGGTAAGATAAATCACACTTAAAAGATATATATTATATCAATTTTTCCTGTGAAACAAATGTTAGTCTGGCTTTTTTTGGATTCAGTTATATGCGTAGAGTATTCATCTCTAAGTTCCAAAATTCTTCAAGTATGTTCAGGCAGGCTTCAAAATGAGAATATGTCCTTTGCATCTGAACATAAAATACAAGTTATTAGCTGGGTATTTAGTTGTTAGCATGTGCAACTTTTACAAACCAATGGTTAAAGGTCAAGTGATGAGGGGTGAAGACTAATTCTACTGCTCTTGCTCTCTCACTGAAGATAATCGGGTATTTTGGGCATGGGAGGATAGCTACTTCCAGTATAATTTTTTGTCACCTCTGAAGCATGCAATTGCATTAATATGGGGCAATATTATATCTTGTTTACATGTTGCTTACTTTAATGCAG-ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAGGTAATTTTTCTTCTACTAAAGTATAGTTTTCACTTTTCAGTGGGTGATATTGCGTAAAATTTGGTTCCATTGTTGTTAGCTAGATCAGCCTCTTAAGACAGACCTTTATGAGAATCTAACTATTGGTATTTTTCTTGAATACTAAATTGATGTTAGTTACTTTCTCTATTCTAATTAAGTAGCACTTTTTCTTTTTAATTTGTTCTAAAATGAATGACACCTTTTTATATCTGCTTCTCATTTTGCCTTTAGTGACATGGTCTTGTACCCAAAGAAATGTCAAGGCATGTTTATGTCCCCCGCCAAGTTGTAACGGTACTTTTGGTATATGTGCTAACGGTCTTTCTGAGTTTCATAAACTCCAGACCAAGTCAAACGTTGCCAGCTAAAATGAATAGAGGGAGTAATGAAAACATTTGCGGAAAAACTGTCACCTACTCAAGAAGAGGGGAACTAAGGACAGCAAATTAACTGCTTTGTATAACCATGCACCATTATTCCTCAGGCATTTCTCTAACAAAGAAAAGAAACTGAAAAGGGGAGGAAAATAGATGAGTTGACAAAAAAAATTAAAGGTTGAGAAAACTAGGGCTGATGAAGAAAGGTGTGATCTTTAAAGGATTAGGGCGGAGGAAAAAAAGGTTGCTTTTGTAAATTCTAAAGAGGAATCAGAAAATGAAAAAAAATCAAAGGTGGAGTTGGTGAAATCGGAGTATGAAATAAGCTGCTGGTGGTAGAAAGAGGGGACACATAAGAGAAAAGACGTGAAACTCACCCGTGGCTTTTAGAACAAAAGGATCTTGCAGAGCTAACTGCAAAATAGCTATTGATAAGAAAAGTGTCATGCTGCAGATTTTTTCATGGCAGTTAAACAAGATAAAAATTGGAAACATCACAAAAAACAGAAGTATAAAATAACAGGTGCAGTAGCTTGTAATCATGCCTACTGCAAGACATCAGAACATATCTCAGGTTTTACTTAAACTGTACCTTCCATAAATCAACCAGTCCTTGACTCTTGTTTCTTTTGTTGAACAGATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCGGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAG--TTATGGAAATCCATGTGTTTATCATTTTTCTTTT</genome_strand>
        <mrna_strand>GGAAAATGAGAATTTGGGTGATGAGATTTTGGAGGATTTTGAAACATACTGGGAAGATGTTAATGACCGCTTAATGGTATCAAGGATGGTAAGTGACTCAGTGATTAAGGGGATAGTGAGTGCGGTGGAACAAGAGGCAGCTGAGAGACTAGTGACTAAGGATATGGAATTAGCCAACTTGAAGGAATATTTGCAATTTCATGAAGGGGGTCTTAGCAAAACTGAACTTGAATCTTTTGGGTCACTTATGTCGCAGAATGAGCTAGAAAGCATGGATTTTCGAAAATGTATGACTTTATCAGATGTTTTTATGGAGCATGGTAAGATGGGAGAGTTTCTAGATGGGCTAAGAAGTTTGGCGAAAGATGAATTCAAGAAGTTGAAGAAGAGTATTGATGAGCTCAGAGGATCCAATTCTGTTAGTAACAAGATCTCTCGCTCTGAGATGGCGAAACTAGAAGGTATTCTACAGGAGAAAGAATCTGGAATTTGGGTTCAGTTGGACAAAACACTAGACAACATAAGAATGATGGTGGACACCGTCTTTAAACGTATGGATGTTATGCTACAGTTGTCCAAGACATCACTTCATCACTGGCAGGAGGAACATCTAATCAAAGTGGAGCTTGAGTCCATGGTAATGCAGTGTGTAATTCGGACCGTGCAAGAAGAATTTGAGTACAAACTGTGGGACCAGTATGCTCAATTATGTGGTGACCGAAATGAGAAGTTGAATGCCATCTCTAGTTTACGGACGGAGTTGGATGCTGTTTTGAAGTCATTGTCAAGTTCAGAAAATGGGCATGTGACTTCCCATGGATCGCATGATGCAGATTTCTTTACACGCAAGAAATCAAGTGAGTACGTGACTTCTACCAAATCAGTTTGGGATGGAAATGGAAAGCTGGAGGATTCTAAGACTGATATACCTGAGAATTTTGATGCTGTCACGTTGAAGCACATGTCAAAAGATGAAATGGTGACCTATTTTAATAATATAATGACAAAGATGAAGAGACACCATGAGTCCATTCTGCAAAAGAAAACCGATGAATATTTTGTTCTAAGGGCAGAGTATTTAAATCTTAGAGGTGGCTCTGTTGTGCCTCATAAAAAGGATAAGGGTGAATCTGACATTCTAAGGAAGAAGATTCCAGAAATTATATTCAAATTGGATGATATTCTGGTAGAGAATGAAAAACATCCTGCATTTACCCAGGAGACTCTAAGTTTCGGTAACTTAAAGGATAGGCTTGATAACCTTCTTTCTGAAAATCACCAGCTTAGAGACTTGGTTAAAGAAAAGAAAAATGAAGTTAAGTCCCTTTTGTCCCAAGTTTCAGATGCCACTGAGAAGAGGCTGCAACATTCTTTGGCAGAAGCAGGCATGCTAAAACAGATAGGAGAACTCAATTTAGCCATGGAAGAGTCACTGATAGGAGGTTCTGTAAGGGAAGACGTGTATACCTGTTTTCTAAGAGATCTCAGTGGCGGGGCAAGAAATGAAGTTGAGGAGTTAAACTTGGGATTTAATATGATTAATGAAAGTAATGATACTAGTGCTGGAAGTACCAGAAAAATTGAAATTGAAGATTTAGAGATGGAGTGCCTGATTATGCAAGAAATTTGTGGAGTGATTTCCGGTGAAGGCATTAAGGAGGCTAAAGATATGCTTAAGGAACTGTATTTGGAGCATTTGAATGAAAAAGAAATTCGAACTTCTCTTGATACAAAACTTATTGAGATGGAAAACAAATTAAAATTCGAGGTTGAAGAGAAGGACAGACTGATGCAGATGGAAAAGTTAGTGAACGAGAAGGAGAAGTTAGCAACAGATGCATCAGCTGCTCTAGCAAAAGAGAGGGTTCAGTCTGAGCAGGTTCGTCAAGAGTTGAATGCTGCGAAAGAATTTGCAAGTCAACAACAAACATTAGCTTCTGGGTGCAACAAAGAAGTAAATGTAATAAAGGGCCAGTTGGCAGAAGCAGTGGAGCGAATTGAAGTACTGAAAGAGGAGGTAGCCCAATTAAATATAAGTCTTGAGGAGAAGACTGAGGAGTTAAAAGAAGCTAATCACAGGGCAAATATGGTCCTTGCTATTTCTGAAGAGAGGCAAACTCTTTTGTCCTCTCTTGAATCAAAAGAAATAGCGCTAAGAAAGCAGGTGGAAAAAATAATTGGTAATATAAATGAATCGTCAAAAATGATTGCTGATTTTGAATGCAGGGTGACAGGAAGGTTGAAAACAAATAATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCACTCGTTTTCTCAAATGGATTGTCTTGTTAAGAAGGCCAATTTGCTGAGAAGAACAACACTACTGTATCAACAAAGGCTTGAAAAACGATGTTCAGACCTTAAATTGGCTGAGGCTGAG...........................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTTTTGGGAGATGAGGTGGATACACTTCTAAGCCTAGTTGAGAAGATTTACATAGCGCTTGATCATTACTCGCCAGTTTTACAGCATTATCCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCAGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAGTTTTATGGAAATCCATGTGTTTATCATTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297616" ref_strand="+" ref_description="SGN-E297616 [cLET-28-C17]">
      <seq>cccgggctgcaagctgagcctgcattggcctctggaactgctatttctgcagtttgtgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23677" stop="28106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23963" g_stop="24279" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="393" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="504" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="552" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E297616" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23963" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATC</genome_strand>
        <mrna_strand>CCCGGGCTGCAA-GCTGAGCCTGCATTGGCCTCTGGAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705634" ref_strand="+" ref_description="SGN-E705634 [FA27CH03]">
      <seq>ctttaaccctgagccgccattggcctctgtaactgctatttctgcagtttgtgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactttaaaggccctggaaattttgaccggctgctatatccttgtccagggaaacacagttgctgctatgggttcctttaaaggtctaaagcaagcgaggagggttatagaggactgcatattgaacaagatgcatccgctacatcatatcaagatcctcatgctgaagagagagctttgcaaaaatccagctctggctagtgagaactgggacagatttcttcgcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23669" stop="30163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23969" g_stop="24279" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="388" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="499" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="568" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="625" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="664" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29562" g_stop="29666" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="769" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29785" g_stop="29863" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="847" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E705634" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23969" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29666"/>
          <exon e_start="29785" e_stop="29863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAGGTAAATGAACAAGTGCATGATAATTAAAAATGAATTTCATTGGGTATTTGGCTATTTATTATGCTCTGGCTAAAAGATCTGATAATTTACTTTTGCTGACGTACCCCTTCGACCTCAGATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTA</genome_strand>
        <mrna_strand>CTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG........................................................................................................................................................GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG......................................................................................................................ATCCTCATGCTGAAGAGAGAGCTTTGCAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTT-CGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296640" ref_strand="+" ref_description="SGN-E296640 [cLET-39-C7]">
      <seq>ccattggcctctgtaactgctatttctgcagtttgtgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaagctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23685" stop="29046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23985" g_stop="24279" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="372" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="483" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="552" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28746" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="570" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E296640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23985" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGC</genome_strand>
        <mrna_strand>CCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577650" ref_strand="+" ref_description="SGN-E577650 [LE15BC10]">
      <seq>tgtaactgctatttctgcagtttgtgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactataaaggccctggaaattttgaccggctgctatatccttgtacagggaaacacagttgctgctatgggttccttaaaggtctaaagcaagcgaggagggttatagaggactgcatattgaacaagatgcatccgctacatcatatcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23696" stop="29968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23996" g_stop="24279" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="361" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="472" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="541" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="598" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="0.98"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="637" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29562" g_stop="29666" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="741" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E577650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23996" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG</genome_strand>
        <mrna_strand>TGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTACAG........................................................................................................................................................GGAAACACAGTTGCTGCTATGGGTTCC-TTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248925" ref_strand="+" ref_description="SGN-E248925 [cLEF-49-L17]">
      <seq>aactgctatttctgcagtttgtgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaagctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23699" stop="28106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23999" g_stop="24279" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="358" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="469" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="517" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E248925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23999" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATC</genome_strand>
        <mrna_strand>AACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335229" ref_strand="+" ref_description="SGN-E335229 [cTOE-1-I21]">
      <seq>tgcgtttctctgtaagttttcattgataatttgtggaatttcggttcagtttcgactgactgcaatggcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23720" stop="29081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24020" g_stop="24279" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="337" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="448" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="517" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28781" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="570" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E335229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24020" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTT</genome_strand>
        <mrna_strand>TGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268467" ref_strand="+" ref_description="SGN-E268467 [cLEI-13-P4]">
      <seq>gcagatgaggagaatttaacagttaatgaagagttgattccgaagccgaggcacaagggaaaacatgacaaaccaaagccatgggatgatgaaagcattgatcattggaagattgagaagtttgatccttcctggaaccagagtggattgcttgaagtcagttcgttttcaactctattccctcagtacagagagaaatatttgcaagagtgttggcctactgtaaaaggtgcgttgaaagagcatggaattgcctgcgaacttaacttggttgaaggatctatgacagtttctactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactttaaaggccctggaaattttgaccggctgctatatccttgtccagggaaacacagttgctgctatgggttcctttaaaggtctaaagcaagcgaggagggttatagaggactgcatattgaacaagatgcatccgctacatcatatcaagatcctcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="23787" stop="29968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24087" g_stop="24279" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25530" g_stop="25606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="270" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="381" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="450" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28729" g_stop="28785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="507" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="546" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29562" g_stop="29666" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="651" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29785" g_stop="29795" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="662" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E268467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24087" e_stop="24279"/>
          <exon e_start="25530" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29666"/>
          <exon e_start="29785" e_stop="29795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAGGTTAGCTCCCAAAAAATATGTTCTTTCGAGACCACAGTTTTATGACCTAATTGAAAGAAGAATGAAATTACTTTGTAACATTATTCTCTGCCTTACGAATTAAGTTTGATTAGCAAATACTTGGTAAATTTTAGAACTTTGCCGTATTAATTCAGTGTTATCTGTCTGATTTCATTGTCAAATTTAGAGTTTGGAGCTTTGGGTGCATTTGCACTAGTCTCTTTTATGCATGCCCAGATTTTTTCTCAGTTGATCTTTGAATACATAGGTAACGTTTGATAGGGGAACAAGTTATTCCGGGAATGTTATCTCTCCCTATGTGGGATAAAAATATCACTATAAAAATGGTATAACTTAACATGAGATAGAACTCATCCCGGTATTAGTTATCCCTTAATCTATAGTACCAAATGAGCCCCTAGAGTTTATTAACAACAACACCTCAGTCCCAAACAAGTTATAGTCGGCTATATGAATCCTCTTCTTTTTTTTCCTCAAGGCACATCATTATCCTACCAAATAAAATAGAAGTAAAACCTATAGGGATTTGTTTCTTCCATTATACTCTATCTGTAACTGAATTAGCATTCATTCCAAGGATTTGTAGGTCTATAGGGACGGCTTCATTCCATGTGATTTTTTTTTGAAACAGGTAAGTTTAGGGCTACCCTGTCCCCATTTAAAACATTCACTCACCAAAGTTTCACACTTACAGACCGCTGCATCGGTAGGTCAATGCATTACATGACAAAATCAGGGAGACTAGAATAAATGTGTGTGCAGGGGTTGGTTAGATTTAGGCACATTAGGAATTTTGATGGGATGTGTCTTGCCTGTCAGTTTTGCTCTTATTGGAGCATATACGTTTTTTGCTCACCAATATTCAGATACATGATATGGTTTAACTTAAGTTGATGTTTTGACTATACCAAATTGCAGAAAGAGAAAGCAGTTATATGTGTGTTGGATTATCGTTTAGTTGCGTATTTCCTCAATGATTTGTTAATAAGAACTGAAAACACAAGGTGCACTGAGCAGGTTGAGATTTTCAGTGAATCTATTAGTTAAAATGCCAGACTGAGTCTCTACTTATAAATTATAAAATGCTCACTTGATCATGTTTGCATTTTAACCTTCCCTTGATAAGTATGCTTTTATATTTTTTGTTGAAATCTATCGATGTTTCTTGTGAATCTAAAATAATTGACGCATGAGTGTGCTGTATGTTAATAATTGAGCATTTATATCAGAGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAGGTAAATGAACAAGTGCATGATAATTAAAAATGAATTTCATTGGGTATTTGGCTATTTATTATGCTCTGGCTAAAAGATCTGATAATTTACTTTTGCTGACGTACCCCTTCGACCTCAGATCCTCATGCT</genome_strand>
        <mrna_strand>GCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG........................................................................................................................................................GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG......................................................................................................................ATCCTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301222" ref_strand="+" ref_description="SGN-E301222 [cLEW-24-C9]">
      <seq>gagcatggaattgcctgcgaacggaactcggttgaaggatctatgacagtttcgactactatgaagacaagggatccctatattattgtaaaagctagggatttgataaaacttttgtcaagaagtgttcctgcacctcaggctgtcaaaatcctgaatgatgagatgcaatgtgacataatcaagatcggcaacatggttcgcaacaaggagcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactttaaaggccctggaaattttgaccggctgctatatccttgtccaaggaaacacaggtgctgctatgggttcctttaaaggtctaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="25277" stop="29905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25577" g_stop="25606" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26760" g_stop="26870" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="141" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27759" g_stop="27827" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="210" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28729" g_stop="28785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="267" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="306" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29562" g_stop="29605" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="350" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E301222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25577" e_stop="25606"/>
          <exon e_start="26760" e_stop="26870"/>
          <exon e_start="27759" e_stop="27827"/>
          <exon e_start="28729" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATGGAATTGCCTGCGAACTTAACTTGGTAAGTCATTGTAACCTCTGCCTCTCTCTCTCTCTCACACACACACACACACACACACATTTTCATTGCTGTCTATAACTATTAGAATACTTCTAGAACTATGTATTATTTGTTAGTTGGTAAGGTCCTAATTCGTTTCGGCGAGCTTGAGAACCAAGTTTACTTACATCTGATTTGTATTTTGTCGACAAGTAAAATTTCTATGTGCTAACTCTTGGGTAATGCATTCCTGAATTAACCAGTGTTTGATGTCGTATACTTAATTAAACAGTATTTATACGGAATTAAACCTTATTGACGAAGCACCCAAATTTATGCTCATCATTTATTCTCCTTGGGGACTAACATGATGGACATTGCGTATCCATTTCAGCTGCCCATACAATGATGAGCTTGCTAAATTGAAATGATGATATATAAGTTATTGCTGAAAAATGGACTTCCTCATTACAAGTAGCTGTGGATAAAACCTCCAGTTTTTAACAGCATTCTTGAGTTGCTCACATTTCTTTTTTAAGCAAAGATCCTTACAAAATCTTCACTTATGGTGCGAGGGTCATATGTTAGATAGCTTTTCACAGTTTTAAATAGCATTAGGACTGTTAAGATCTGTAACCCCTTTCATCTCGTTCTCTTCTCAGATCTCAGTACCTTCTTGGTACTTATTTAGATGAAATCTACTTCACATTATTCAAGATGTAGAAAATGAATAAGAGGATTCCTGAGTGATACTGGGTTTAGGTTCCTTATTTATCATATTTGAACCTCTTGTTTAGTTATCTACTTAGTGACAAGCAATGTTTATGTAGTGGGTCTTTGGAGAAGAAGTTCCCACTTAGAGTAAGCATGTATATACGGAAATTTATTTCATTGTTAGGGGCTTTGAAGAAATAGTTTTCAAGCATGGAGAAAGTATGTACAAACAAGAAACATATTTTATTGATAGGGGTTGAATGTTTGGTAACATTCCATGTTTTTGTGATATGTCAGCAACTTCAAAGAGCATCACACACTATTACCTTGACTGGCTATTATTTATTATTGGTTTTCCACATTTTGTCTTCCCACTTTACTCTCTAATGAGCACTAATATTAGGTCTGCTTTTTTGCAAGTAATATCATCTGTTTATTTTTTTCTTTTATTGTGGGCCAGGTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGTTTGTGTTTTTTTCCAATCCTTGATTGTTTCTCATCATCTCTGATTCTTTTTCTGTAGCATACTGAATGTTTGGTCGGAACTTTTAGAAACGAGCAGTAAATAGCATTGTTTTAGGATTGACCCTCCTTCTGTTAATGGGATGATATTCACTTTGTTTCAAAACCAGGAAAGGGTTGACTTTAGTTTTGATCAGTAATCCAGGGGAGGTTGGACTTGTCATATATGTTGAATTATAAAGTTATTGCCAGCTTTAAGTTTATTTAGACCAGCAGCTATCTTATGCTTAATCAGAATGTGGAGCCTCTCTATGGTCCACAAATTTCCTGAGATTTTGTAAAGATATTTAGATTTAGGTGTCACTCATATGCTCTGAACAATTCATCTTCTTTTTGCTTGGATATTGTTTCGCATAAAGCAGATCTGCCTAAGCTATCTATTGCATATTGTTTAATGGCCTTCTACTCTACTTGTCTATTATTTTTTTATTGATAACCGAGAAATCCGTTTGTAACCTGCCCTTTGGACCAATCGCAACCTTCTAAACTTGGTGGATAATGGCCCTCTACCCTTCTCTACTTAAATACCGGGCTTCGCTTTGCATGGTGTGGGGCTTGAACTTGTGACCTAAGCCACAAATCCTCCACCTTTTGTTACTCGAGCTAGGCCTTGGGGGCGTCTATTATTTATTTTGTTTTTCACTTTTAGAAGAGAAAAAGAGAACACATTTATTATCCACAACTTTGCGCTGCGTGTCTCTTCTGGAATTTGAATGTCCCCTGTGGAATTTGAATGTTAAGCTGGAGGATTGCTTCACTATATTATGTGCTCTTTTAATTATCAATAGTCTTTACTGTTGGTTAATTCTAAATGAAATATGCTTTTCCAGGCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAGGTGTGCTATGCTCATCCATACTCAAATTAAGTACATGTATTTCAATTTTATCTTTTATTTGGTGGATGATTTTGACGAGAAGATGAATTCTATGTATGGCTGTCAAACACTTAGTTGGATACTCGTCAAATAAAAATGTTCCTTCACATAATATGCACACTTTTGATAAGTATGCTCATTCACAATATTCCATACTTCTTTTTTACAAGTATGAGAGGGCTCGTAGCCCCCCCACTACCCCCCCCCCCCCAACCACCACTACTCGTCCGCACTCGTATTTGTTTTCACCCAGCATGCATACCCAAAAGTAGCCTTGAAGAGACTCAAACCTCCAATTTCCTTAAGCATGAGATTCCCTTCATGAAAAAAAGAGATCTGTTTCAAGGTTTGCCTGTCTAGCAGTTCTTCACTAAAGCATCTTAAATTGCACCATATGCAGTGAGTGTGATATGTTCCTTTTGCCTTGATGATTATCTCTGTTGTATCAAAGGTACTAGTAAAGATGGATATGATTTCTAACTCCTGGTGAACAAAATAGTGTTTTTTGTAGAACACTACTTTGGCCGTTCCATTTTTTAATATATATATATATATATATATATATTAAAATTGTAGCTGCAAAAGAAATTTTATAGGAATGACGTCACATAAAAGTTCAAAATTTGATTGCCTGAACATTGTACAAGTTATATAGAATAATATTGTTAATTGAATAGTGTCAAACATTAATGTCCCCGAAAAGGAAATAGTGTCATATGAATTTGAATCAAGATTAGTAAAAATAATGGTAATAATAGGATGTGAAGCTCATAGTTAGATTACTGTATTTTTGGGTATTTATGTTCACATGTATTTGGTTTGCGTTGTCTAAATTCATGTTATTAAACTCTCTGTTTTTCAGGAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCA</genome_strand>
        <mrna_strand>GAGCATGGAATTGCCTGCGAACGGAACTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGATCTATGACAGTTTCGACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAA........................................................................................................................................................GGAAACACAGGTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269812" ref_strand="+" ref_description="SGN-E269812 [cLEM-17-A4]">
      <seq>gcgctttgttaaacgcagacaatatcttgtgggtcccaattcgtcaactttaaaggccctggaaattttgaccggctgctatatccttgtccagggaaacacagttgctgctatgggttcctttaaaggtctaaagcaagcgaggagggttatagaggactgcatattgaacaagatgcatccgctacatcatatcaagatcctcatgctgaagagagagcttgcaaaaaatccagctctggctagtgagaactgggacagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="28431" stop="30149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28731" g_stop="28785" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585">
            <donor d_prob="0.013" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29371" g_stop="29409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="94" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29562" g_stop="29666" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="199" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29785" g_stop="29849" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="264" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E269812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28731" e_stop="28785"/>
          <exon e_start="29371" e_stop="29409"/>
          <exon e_start="29562" e_stop="29666"/>
          <exon e_start="29785" e_stop="29849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAGGTTAGTGGATTGGGTTCTGCACCATTCTCTGGAAATCCCAATTGGCTAGGAGAGCATTCTATGCACATTGTTATGTAGGACTGAGACAAGAACAATTGACCAAAGACCATTCTCTAGACCAAAGACCATTTCGTCGAGGAGTATTTTCTTATTTCTTTGTTTAGACCAGCATGAGCTGGAAAGCATTTGTACTGTGTTTGCTTACCTGTCAGGATGATTTATTTATTCATAGTGGATGGCCCAACTTCTAAGAGGAAGATTTTCCCAGAATATTCATCTTGAATCAATAATGACAAATATGTGAAATTGAACTTCTAGAGAGTAGCTTATTGTGGGTAATGATTTTGTTGCTCCTTTACATTAGTTATTAATCATGGGTATTGTCTAGTAAACTGATGACCCTTGACTAGAGCCACATGAGGTTTAGTTCTACCTCCTCTCTGTGCCAGCATGACTCATCCATACAAATTAGCTACAGAAATGTTGAGATATAGATCGCTTAAATGTTGATGAATATCTGACACATCTTGCTGAGTTACTATTACCTTCTGCCATAGAGCTTGATATATATCACTTTGGATGTAGGCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAGGTATTCTTGCTGTACATGTAAACTGCATATTTAGTGCCGTTTTTCTTTTCTTCCTTTATGTTGTTTATGCCTTATCATTGAATCTTTAAGTACATGATATAAATATTCTTGCTAATTGGGAACAAACCTTAATCTTGCCTAAAATTGAGTAGGGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAGGTAAATGAACAAGTGCATGATAATTAAAAATGAATTTCATTGGGTATTTGGCTATTTATTATGCTCTGGCTAAAAGATCTGATAATTTACTTTTGCTGACGTACCCCTTCGACCTCAGATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATT</genome_strand>
        <mrna_strand>GCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG........................................................................................................................................................GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG......................................................................................................................ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319761" ref_strand="+" ref_description="SGN-E319761 [cTOB-12-M2]">
      <seq>gctacatcatatcaagatcctcatgctgaagagagagcttgcaaaaaatccagctctggctagtgagaactgggacagatttcttccgcaatttaagaagaagaacgttaaacagaagaaagttcagagcaaagaaaagaaaccatatacgcctttcccacctcctcagccacctagcaagattgatcaacaactggaaagtggtgaatacttcttaagtgacaagaagaagatggcaaagcagtgggaagagaagcaagtcaaacaggctgagaaggttgctgaaaacaagaaaaaacgagaagaagcttttgttccacccgaggaaccaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="29473" stop="31193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29651" g_stop="29666" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29785" g_stop="29867" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="99" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29868" i_stop="29967" i_length="100">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29968" g_stop="30049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="181" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30050" i_stop="30420" i_length="371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30421" g_stop="30564" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="325" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30656" g_stop="30730" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="400" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30833" g_stop="30893" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="461" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E319761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29651" e_stop="29666"/>
          <exon e_start="29785" e_stop="29867"/>
          <exon e_start="29968" e_stop="30049"/>
          <exon e_start="30421" e_stop="30564"/>
          <exon e_start="30656" e_stop="30730"/>
          <exon e_start="30833" e_stop="30893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACATCATATCAAGGTAAATGAACAAGTGCATGATAATTAAAAATGAATTTCATTGGGTATTTGGCTATTTATTATGCTCTGGCTAAAAGATCTGATAATTTACTTTTGCTGACGTACCCCTTCGACCTCAGATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAAGTAAGGCATCCTTTCAAATGGTGTTGAGCCAGATTAATTTTTTAATCTGCAGTGCCAATTTCAAAGCTTGAATATTATTGTTTCGTCTTTGTACATTCAGGAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAGGTGAGATTTTTTGGTTCTAGAGTATCTTTTTATATAAATTTTGGTTCTAGAGTCTCAATCTTTGTCCATTTATTTTGTGCTCTTTCTCTTCTTTATCTCAATTTTATCGGTAGAGTTTTAAATATAATAAAACCCTCGACATTACACTCAAGTACTGTGTAATTGTTATTAGGCAATTATTGGCATGGTGCTGTAATTAGTTATTCCGTTGAATCCTGCTTCTTTGTTTGCTTTTATCTCACTGGTGTTCACTAGATTTTGTGGTTTATTTATTAGTATCTTCAAATGTCTATTGTCTCATCTTCTTTTGCATCTATTAAGATATATCCTCTGTTAATTTAATACGACGTGTATAACTTTTTTGGTTGTAGATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAGGTTTGTATTCACATAATCTCGCCAGGGTATATTTGTTTTGCAGTCCATATGTGCATTTCCTATTGAACATTGTCTGCTTGCACTTCTCCAGGAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTA</genome_strand>
        <mrna_strand>GCTACATCATATCAAG......................................................................................................................ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAA....................................................................................................GAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAG...................................................................................................................................................................................................................................................................................................................................................................................ATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG...........................................................................................GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315533" ref_strand="+" ref_description="SGN-E315533 [cTOA-22-E13]">
      <seq>agaagatggcaaagcagtgggaagagaagcaagtcaaacaggctgagaaggttgctgaaaacaagaaaaaacgagaagaagcttttgttccacccgaggaaccaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattacagtatttatttcgtgtttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30167" stop="31593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30467" g_stop="30564" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30656" g_stop="30730" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="173" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30833" g_stop="31299" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="640" r_length="467" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E315533" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30467" e_stop="30564"/>
          <exon e_start="30656" e_stop="30730"/>
          <exon e_start="30833" e_stop="31299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAGGTTTGTATTCACATAATCTCGCCAGGGTATATTTGTTTTGCAGTCCATATGTGCATTTCCTATTGAACATTGTCTGCTTGCACTTCTCCAGGAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATCA</genome_strand>
        <mrna_strand>AGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG...........................................................................................GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315417" ref_strand="+" ref_description="SGN-E315417 [cTOA-22-E12]">
      <seq>agaagatggcaaagcagtgggaagagaagcaagtcaaacaggctgagaaggttgctgaaaacaagaaaaaacgagaagaagcttttgttccacccgaggaaccaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtggtgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacagtaatctaaacagactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30167" stop="31566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30467" g_stop="30564" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30656" g_stop="30730" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="173" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30833" g_stop="31266" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="606" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E315417" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30467" e_stop="30564"/>
          <exon e_start="30656" e_stop="30730"/>
          <exon e_start="30833" e_stop="31266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAGGTTTGTATTCACATAATCTCGCCAGGGTATATTTGTTTTGCAGTCCATATGTGCATTTCCTATTGAACATTGTCTGCTTGCACTTCTCCAGGAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGAT</genome_strand>
        <mrna_strand>AGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG...........................................................................................GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGGTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCAC-AGTAATCTAAACAGACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354331" ref_strand="+" ref_description="SGN-E354331 [cTOS-17-A1]">
      <seq>gagaagaagcttttgttccacccgaggaaccaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattacagtatttatttcgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30239" stop="31590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30539" g_stop="30564" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30656" g_stop="30730" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="101" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30833" g_stop="31290" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="559" r_length="458" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E354331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30539" e_stop="30564"/>
          <exon e_start="30656" e_stop="30730"/>
          <exon e_start="30833" e_stop="31290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGCTTTTGTTCCACCCGAGGTTTGTATTCACATAATCTCGCCAGGGTATATTTGTTTTGCAGTCCATATGTGCATTTCCTATTGAACATTGTCTGCTTGCACTTCTCCAGGAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTT</genome_strand>
        <mrna_strand>GAGAAGAAGCTTTTGTTCCACCCGAG...........................................................................................GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377615" ref_strand="+" ref_description="SGN-E377615 [TUS-20-E4](-)">
      <seq>aaccaaaaacacataaccaaaatgtgtccaacgtggataaaaatgatgtcactgccatggcatcgtcattgaaaagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatttaaaaagaaatcgaagagctttaaataagtagttgttttttgggaaaaggttgctattggccatttgtgattatgattgctgaaaaaagtctgtaaaaattgctgttttgtcactgttgtattttccattcagcagccatattgatgttaaaattttaaaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatttggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatttaaacagactgatcaattccagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30357" stop="106964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30657" g_stop="30730" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31276" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="518" r_length="444" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31277" i_stop="31526" i_length="250">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31527" g_stop="31553" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="545" r_length="27" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E377615" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30657" e_stop="30730"/>
          <exon e_start="30833" e_stop="31276"/>
          <exon e_start="31527" e_stop="31553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATCATCTCGTTTGTGTAGTTTATGTGGAAGTGTGTGAACTTCTATACTTGCAACATTAGAAAGGAAGTGAGAAGAAATTTGTTTTTTTCTGGGTTTTCCTCGAATCATACTAAAACTGTTATATGAGTGAATACTTATAGTAACCTGAAAAGTAGAGCAAAATAACCTACTACGTGCAAAATGTTGGTGAAATCCATAAGATATACATTACAATTCTCACTTGTATGATACAAAACTAAAACAAAGGATCAAACGAAA</genome_strand>
        <mrna_strand>AACCAAAAACACATAACCAAAATGTGTCCAACGTGGATAAAAATGATGTCACTGCCATGGCATCGTCATTGAAA......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATTTAAAAAGAAATCGAAGAGCTTTAAATAAGTAGTTGTTTTTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAAAAAGTCTGTAAAAATTGCTGTTTTGTCACTGTTGTATTTTCCATTCAGCAGCCATATTGATGTTAAAATTTTAAAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATTTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATTTAAACAGACTGATCAATTCCAGT..........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377616" ref_strand="+" ref_description="SGN-E377616 [TUS-20-E4]">
      <seq>accaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattacagtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30358" stop="106963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30658" g_stop="30730" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31276" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="517" r_length="444" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31277" i_stop="31942" i_length="666">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31943" g_stop="31962" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="537" r_length="20" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31963" i_stop="33209" i_length="1247">
            <donor d_prob="0.123" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33210" g_stop="33217" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="545" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E377616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30658" e_stop="30730"/>
          <exon e_start="30833" e_stop="31276"/>
          <exon e_start="31943" e_stop="31962"/>
          <exon e_start="33210" e_stop="33217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATCATCTCGTTTGTGTAGTTTATGTGGAAGTGTGTGAACTTCTATACTTGCAACATTAGAAAGGAAGTGAGAAGAAATTTGTTTTTTTCTGGGTTTTCCTCGAATCATACTAAAACTGTTATATGAGTGAATACTTATAGTAACCTGAAAAGTAGAGCAAAATAACCTACTACGTGCAAAATGTTGGTGAAATCCATAAGATATACATTACAATTCTCACTTGTATGATACAAAACTAAAACAAAGGATCAAACGAAAGCTCGAAAATAGATTCAAGTTCATCCCAGTTGCCATGTTCTAACCACTCATTAAAGTCCAGAGGAGTACTGGCAGCACCAACAGTTGTACTTTGAGATGATGTTCCTGAGCTTTGTTGGCTTACAAACTGGTGCTTATTTTCTGTTATAGTATTAGTATATGTATTCTGCTTAACAACAGAAGTAGTGCTAAAACTGATGAAAATCTGGGAACTATTTGGAGAAGATTCAATACTACTATTGCTGCATATTTTGGAGCTTAAAACATCCATATTCATCACTGAATTGTTTCTTTGTTTTTTTGCCACTTCTTTCCAATCTGGTATTGGTTTCTTATATGAAACATTTCGTTTCAAGATACGGCAAAGAGTCCATGTTTCCTGCATTATTATAAACAAAAAAAAAATCATGTTAGAATTCTGGTTTCCACTTTAATCCATGAGAATTATTTCAACGGTAAATAATATCTTATAGTTTAAACTTTTACATGAGGCGGTGCAGCCATGCAGGTCATACATTTTAACATAGCATCAAAACATAGGAGATATATAAGTAAATAAATCGTGTCATTTCAAATAGCTTAAACTACAGTATGAGACGTTTACGCCATTAACCAATATGGTATGTATCAGAGAGGGGTGCTATCTTAAGTCTCACCCCAGTGGTTTGGGCTTGGAACTTCCATGTTACAAGTCTCAAGTTCGAAATTCCTTGTCAGCGAAAGCAAGGGGTTTTCATTCTGGGTCGAGCTTGTCACACCAGGCTTACCTAGTGTAGATTACCTCTCCTGTGTGGTTTGCGATCTATGTGGGGTTTTACTCTATGCACACCCAAAAGGTAGCGACTGCGGGTTTCCCTTGTCATAAAAAAAAAATCCTCACCTTCACTCTTATTATCAAAAACTGCCACTCCCTTTGTTCCAATTTATGTGACTTACTTTCCTTTTTAGTCAGTCACAAAAGGAATAACACATTTCTATATTAAGTATCATTTAACTATAAAATGTCTAATTTATATTTAATGAACACATAAATTTCTATCATTCATTTTGTACCACAAATTTTAAAAGTCTTTATTTCTTTCTTAAACTCTGTGCTGAGTCAAAATACCACACATAAAATAGAACGGAGGGAGTATTTAACATGGGCACACACAGTTTAACAAGTTTGACTCTAATATAGTGGTAAACCGTTAGAAAAGGCAAAAGAAAAAACTTTTGCATGTTGTTCCAATGCAAAAAAGGTCATGCAACTATATGAAATCAATTATTCTTCAGCCATACAAATATATCATGACATGCTAAACGTCACAAAAGTACGATTTCAAAAATTTCAACTATTCATGCCGAACAAAATGAATCGTAGAAGGATCGAAATGAAATGAAATGGTTCTTACATCTTGTTGAGGTATGGTGTTAGCATGGAGATGTTTGGTTGATTTATCATTTTCAACAGGAAGACGAAACTCATGCATCTGCCACTCGGTTTTCGTGCCTTTTCCGGCGCTACCACGGTAATAAACCAGTGACTTTTTCAGGCCAATGCATTTGCCAGAAGAATAAATAGGTCTATCAATACCAGTAGCCTTCCAAAATCCAGAACCACCAGTTACTCTATTAGGTCTTAAGCTGTTTTTGTATTTTCTGCCTCTTTTGCAGAAAAAATA</genome_strand>
        <mrna_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232968" ref_strand="+" ref_description="SGN-E232968 [cLED-6-I8]">
      <seq>accaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30358" stop="31574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30658" g_stop="30730" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31274" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="515" r_length="442" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E232968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30658" e_stop="30730"/>
          <exon e_start="30833" e_stop="31274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACA</genome_strand>
        <mrna_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231717" ref_strand="+" ref_description="SGN-E231717 [cLED-4-L15]">
      <seq>accaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactctnttttccccctttagttgtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30358" stop="31480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30658" g_stop="30730" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31180" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="421" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E231717" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30658" e_stop="30730"/>
          <exon e_start="30833" e_stop="31180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGAT</genome_strand>
        <mrna_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTNTTTTCCCCCTTTAGTTGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231713" ref_strand="+" ref_description="SGN-E231713 [cLED-4-J17]">
      <seq>accaaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatctaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaagaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattctagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30358" stop="31479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30658" g_stop="30730" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31179" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="420" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E231713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30658" e_stop="30730"/>
          <exon e_start="30833" e_stop="31179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGA</genome_strand>
        <mrna_strand>ACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249329" ref_strand="-" ref_description="SGN-E249329 [cLEF-50-M11]">
      <seq>caaaaacacataaccaagatgtgtccaacgtggataaagatgatgtcactgccatggcatcgtcattgaagagaaaagcaaaggagttcaggaagcaaaaatcaattgataagatcaacgctgaggaatttattgcaggtcctagcaaaccatttaaaaagaaatcgaagagctctagataagtagttgtctcttgggaaaaggttgctattggccatttgtgattatgattgctgaaaaaagtctgtaaaaattgctgtcttgtcactgttgtatcttccattcagcagccatattgatgttaaaattttagaggaccttcccttccatgccatcagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattacagtatttatttcgtgtttaatcatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30360" stop="106964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30660" g_stop="30730" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30833" g_stop="31298" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="537" r_length="466" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31299" i_stop="31943" i_length="645">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31944" g_stop="31962" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="556" r_length="19" r_score="0.737"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31963" i_stop="33209" i_length="1247">
            <donor d_prob="0.123" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33210" g_stop="33220" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="567" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E249329" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249329" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30660" e_stop="30730"/>
          <exon e_start="30833" e_stop="31298"/>
          <exon e_start="31944" e_stop="31962"/>
          <exon e_start="33210" e_stop="33220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAGGTATTTCCATGATGCTTTTAATCTATACTGCACCCTTCTGTGTCTGTACTTTGATTCGTCGATTGCTAATGATATGATTCATTCGTATTGGTTTTGCTGCAGAGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATCATCTCGTTTGTGTAGTTTATGTGGAAGTGTGTGAACTTCTATACTTGCAACATTAGAAAGGAAGTGAGAAGAAATTTGTTTTTTTCTGGGTTTTCCTCGAATCATACTAAAACTGTTATATGAGTGAATACTTATAGTAACCTGAAAAGTAGAGCAAAATAACCTACTACGTGCAAAATGTTGGTGAAATCCATAAGATATACATTACAATTCTCACTTGTATGATACAAAACTAAAACAAAGGATCAAACGAAAGCTCGAAAATAGATTCAAGTTCATCCCAGTTGCCATGTTCTAACCACTCATTAAAGTCCAGAGGAGTACTGGCAGCACCAACAGTTGTACTTTGAGATGATGTTCCTGAGCTTTGTTGGCTTACAAACTGGTGCTTATTTTCTGTTATAGTATTAGTATATGTATTCTGCTTAACAACAGAAGTAGTGCTAAAACTGATGAAAATCTGGGAACTATTTGGAGAAGATTCAATACTACTATTGCTGCATATTTTGGAGCTTAAAACATCCATATTCATCACTGAATTGTTTCTTTGTTTTTTTGCCACTTCTTTCCAATCTGGTATTGGTTTCTTATATGAAACATTTCGTTTCAAGATACGGCAAAGAGTCCATGTTTCCTGCATTATTATAAACAAAAAAAAAATCATGTTAGAATTCTGGTTTCCACTTTAATCCATGAGAATTATTTCAACGGTAAATAATATCTTATAGTTTAAACTTTTACATGAGGCGGTGCAGCCATGCAGGTCATACATTTTAACATAGCATCAAAACATAGGAGATATATAAGTAAATAAATCGTGTCATTTCAAATAGCTTAAACTACAGTATGAGACGTTTACGCCATTAACCAATATGGTATGTATCAGAGAGGGGTGCTATCTTAAGTCTCACCCCAGTGGTTTGGGCTTGGAACTTCCATGTTACAAGTCTCAAGTTCGAAATTCCTTGTCAGCGAAAGCAAGGGGTTTTCATTCTGGGTCGAGCTTGTCACACCAGGCTTACCTAGTGTAGATTACCTCTCCTGTGTGGTTTGCGATCTATGTGGGGTTTTACTCTATGCACACCCAAAAGGTAGCGACTGCGGGTTTCCCTTGTCATAAAAAAAAAATCCTCACCTTCACTCTTATTATCAAAAACTGCCACTCCCTTTGTTCCAATTTATGTGACTTACTTTCCTTTTTAGTCAGTCACAAAAGGAATAACACATTTCTATATTAAGTATCATTTAACTATAAAATGTCTAATTTATATTTAATGAACACATAAATTTCTATCATTCATTTTGTACCACAAATTTTAAAAGTCTTTATTTCTTTCTTAAACTCTGTGCTGAGTCAAAATACCACACATAAAATAGAACGGAGGGAGTATTTAACATGGGCACACACAGTTTAACAAGTTTGACTCTAATATAGTGGTAAACCGTTAGAAAAGGCAAAAGAAAAAACTTTTGCATGTTGTTCCAATGCAAAAAAGGTCATGCAACTATATGAAATCAATTATTCTTCAGCCATACAAATATATCATGACATGCTAAACGTCACAAAAGTACGATTTCAAAAATTTCAACTATTCATGCCGAACAAAATGAATCGTAGAAGGATCGAAATGAAATGAAATGGTTCTTACATCTTGTTGAGGTATGGTGTTAGCATGGAGATGTTTGGTTGATTTATCATTTTCAACAGGAAGACGAAACTCATGCATCTGCCACTCGGTTTTCGTGCCTTTTCCGGCGCTACCACGGTAATAAACCAGTGACTTTTTCAGGCCAATGCATTTGCCAGAAGAATAAATAGGTCTATCAATACCAGTAGCCTTCCAAAATCCAGAACCACCAGTTACTCTATTAGGTCTTAAGCTGTTTTTGTATTTTCTGCCTCTTTTGCAGAAAAAATACCA</genome_strand>
        <mrna_strand>CAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG......................................................................................................AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATTTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTTGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAAAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTTTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351113" ref_strand="+" ref_description="SGN-E351113 [cTOS-6-F2]">
      <seq>cagcacgacgatcagctagtccttgtatctggcatttttggaaacggggaaaacactcttttttccccctttagttgtgatgatgggcgaagtccatagtgttgttgctttgtgtaccatactgattgatcgcgtttgctttgtgtcacaagtaatctaaacagactgatcaattacagtatttatttcgtgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="30797" stop="31593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31097" g_stop="31292" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="197" polyA_stop="207"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E351113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31097" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTA</genome_strand>
        <mrna_strand>CAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538073" ref_strand="-" ref_description="SGN-E538073 [TUS-57-A2]">
      <seq>tatctgtggaaagtggcgaagggcgccgctatttgaagttcaaacagataattgggagtgcttccgttctgtcctttgggatccagctcacgccgattgtgctgtacctcaagaactagagacggaggaagttctgaagcaattgaagtatatggagatgttgaaacaccggctggtagttaagaggcgcaaattgaatcaaacctcaggtgctggctcacggttcttgacaaagaaatgagaagatacaggcttcatgtacggaaatgttcatcttgtacatttaagcataaaaattttggacaattggagtagtactacatgagattttcatcacagtattctgatgtaattgcttcagaaacatagttgtacaatttagaaggtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttctatttttctctctggtataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="59882" stop="55807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59577" g_stop="59487" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="112" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59486" i_stop="58231" i_length="1256">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58230" g_stop="58183" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="160" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58182" i_stop="56719" i_length="1464">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56718" g_stop="56107" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="772" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="786"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E538073" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59577" e_stop="59487"/>
          <exon e_start="58230" e_stop="58183"/>
          <exon e_start="56718" e_stop="56107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAAGTATGTGAGTTTTTTTCAGTCCAGATGTTGTGTTCAACATCTTTTCTTCAACTTAACTCATTAACTTGATTCATTCCTTCCCCATTACCATTCCTCGCTCTATGTTTCTTTTCTTCCCCATCCCTGATCTTGCTTCTAGATCTATTGCATTTTGTTTTTGTTAGTTTTGGAGAATTATTTTTTTGTTGAGATTAAGGCGTTTGCTTCCAAAGCTGTCTAGCTGTTGCACAGATTTTATGCTGGCATGTGTAAGAAAGAAATACTTATATCTTTGAGTTTATGTTGAAGAATCATTCAAGTGCTATAATAGCTTCAGTGTTTTTCATCATCATCTCGGGGAAGATGCTTAGTGTTAATATTAAGTGCGGCCATTATCCCTCTTTGGGCTAGTATATTTGCTATGTTCGATTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCTATATGAGATAGATCTATTGCATATTTGCATTTTGTTTTTGTTAGTTTGGAGAATTAGTTTTTTGGTGAGATTAAGGCGTTTGCTTCCAAAGTTGTCTAGCTGTTGCACAGATTTTATGCTAGCATGTGTCAGAAAGAAATACTTATATTTTTGAGTTTATATTGAAGAGTCATTCAAGTGCTATAATAGCTTCAGTGTTTTTCATCATCATCTCGGGGAAGATGCTTAGTGTAATATTAAGTGAGGCCATTATCCCTCTTTGGGCTAGTATTTTGCTATGTTCATATCCACTCTTCTCATGTCCCTAAAAAGATGGAGGTTTATACTGAAACGTATACAGTAATATTTAAACTAAGCTTTTTCTGTGGACTCTTACATGTATGGAATGATTAAACCTTTGATACTCTAAATAATTTTTCTAGAAGCAATGAAATACATGTGGATTGGAAATCCTAGAAGTGCCATAACACGGTCATAAAAAAAAAGTCCTACAAGTTCCATGACATTGATATTATGGCATTGCTGCATGTTTTTACTGATCTTTGGGTTTTTCATTTGCTATATTGCCCATTTCATTGAGATCTATCCTTATTAATAACAACACATATCCAGTGTAATCCAACAAGTGGGATATTGGGAGGGTGGTGTGTACGCATCCTTACCCCTACCATGTGAAGGTAGAGAGGCTGTTTCCACTAGACTTTTGAGTCTTGGCTCAAGTAAAGCATATAATATTTCTTAAATTGTTTTTCTGATCGCTATTCTTTGTCTCTCACTCTGGCTCAGGAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATGGTATATCAGCAAACCTTATTATATCACTCTTTTCCTGTTTTGATAAATGGATGAGTCACTTATATGCTTTATTTAGCAAGAGGTGTAGGTAAGAAATAATATAATGCAAAAGATCGACCCCATCAGCCAAATTATATACATGACTAAAAAATTTCTGTCTTCTGGTGTTTTACATTCTTCTAAAATAGAAAAATTCTTTTCAAATGCAATTATGTTTCTCAACTATTTCTGTTACATAATCTGTTTAGAAAATGAGTTAATGCAAAGTCACAGCAATTCTCTATTTCCTTTGTACTCGATGGGGTTTCTGCGAGCTACTGTTTTTGTATCCCGCTGTCTCTGCCTCTTGTACACCAAGGTGTTCGTTCCTTTTGTTATTAAAATAGTTTTCTCGTTGAAGAAGATATATCTAAACTTCCTTTGGTGATTGTATTAGATACTATCCATCTTGTCCTATTTCTCTTTAAGTGGAGTAAGGTCTTATTCTCCTACTAGTCGCCTCCCTGTGCACAAAATGGAACCCTGCAGGATTCTGGCCCCTCTATACTATTGGACAGCTTTAAGTTTGAGATGTGCTGTAGTAAACTAGTTGTGCAGAGTCCCAATTTACTACTATTGTACAAGACAAACAGCAAAGAGAAACTAGGATATAGGCTTTGCGCAACATGTTTTCCTTGGTCATGTTACCAGTTCCAAAAAAATTAATATGGTTTCCTTGGACAAGGAAAAATAAGTTGGATTTGATTTCTCTCTCTCATTTGGTAATGCATGACCAACGACGAGATGTGTGTCACAATTAAAGAAAGATTTTTATGTAACTACTTCAGGTTACCCAGGACATCACCTTATATAGGAGGGTGTGGAGCACGCATAGTAGGGTAGAAGGTTAGTAGGCAGTTGAGTGTTGTCTTGCTTTTCGTGGGTTTAGGTTTGTTGGTGTTTGTTGTTGTACTGGTTGTATTATTGTACTTCTTGCTTTTGATATCTATCACTGTTTGTTGTTTATTGTGTTTCAATTATGGCACTATTTTGTGTTCTTGTTCCTTTCTTGTAGGATTTGTACTGCTTCCCTTGTTAATTTCTATGTTTTCTTATTCTTTGTGCTTGGATTTGCTACACTTGAGATGATGGTCTTTTGGAAATACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGTTTACTTTGTACTCTTCCTAGACCCCACTGGTGGGATTCCATTGGATATGTTATTGTAACTTTTTAGTATAGTTTTATTTGCTATTTTTTCCCTTTATGAACTGTATCTAAATTGTCGGAAAAGGGGGTGCCCATTTAAGTAGTGAATTACTGATGGTGGATCCTTGTCCTACAAATGATCTGTGTTGTTTTCCCTTACAATTGTTGTTTAATTTGCGTTGTATACTTTCCTGACCAACTTATGAAGGTATAGAATATTGAACCTAGTGTTGTTCCTTCTGTTTAGTTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGATAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</genome_strand>
        <mrna_strand>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGACAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATGTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268418" ref_strand="-" ref_description="SGN-E268418 [cLEI-13-L17]">
      <seq>gtagtactacatgagattttcatcacagtattctgatgtaattgcttcagaaacatagttgtacaatttagaaggtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttctatttttctctctggtataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="56867" stop="55807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56567" g_stop="56107" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="474"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E268418" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268418" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56567" e_stop="56107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</genome_strand>
        <mrna_strand>GTAGTACTACATGAGATTTTCATCACAGTATTCTGATGTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215519" ref_strand="+" ref_description="SGN-E215519 [cLEL-20-K19](-)">
      <seq>gtgcaaggaatcagctgcaaagtcgacttgatctttcctggcttcacttcatcacagtacgctgatgtaattgcttcagaaacataattgtacaatttagtaggcgcaaggaatcagctgcaaactcgacttgatctttcctggcttcacttcatctcttagtccatctatctcttctcttttacgtttcgcattgtcagggctgacaaattaacatttcactttcttcgcccttatgtcacatttctgtaatgccttgatgaatttgtgaggccctggtttagtcattgcaggatagagagcaggttgtgaggatatggggaatttgtactcgtgatgacttaatgttagtgcatatttatgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="56793" stop="55825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56493" g_stop="56126" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="384"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E215519" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56493" e_stop="56126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCT</genome_strand>
        <mrna_strand>GTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689238" ref_strand="+" ref_description="SGN-E689238 [t3_tus_80_L05]">
      <seq>ccgtataagataaatganagccattcgncatcaaagggnacctttaattttgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatattatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaggtccagcgacagatgacgctggttgtagtggtgaaccatttgaaatcacaccttcagagaatctctgcttgcctaaacaatcttctaacgaaaatatgaggattagctctattggcaattggcttcagtgccggcaggtcaacgaaggttttgggaaacgtgtggatggaagtatctgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="63997" stop="59766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63700" g_stop="63116" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63115" i_stop="60327" i_length="2789">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60326" g_stop="60266" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="645" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60265" i_stop="60174" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60173" g_stop="60066" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="753" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E689238" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63700" e_stop="63116"/>
          <exon e_start="60326" e_stop="60266"/>
          <exon e_start="60173" e_stop="60066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCTGTAAGTCCCACTCCTGAAATTTATCTTTCCATACAGCTGCCTGCTCAGTTCTAGGAAAAATTATTTACGAATAACCAAATTATATTGGTCAGAAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</genome_strand>
        <mrna_strand>CCGTATAAG-ATAAATGANAGCCATTCGNCATCAAAGGGNACCTTTAATTTTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATTATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT............................................................................................AAACAATCTTCTAACGAAAATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547996" ref_strand="-" ref_description="SGN-E547996 [TUS-57-A2](-)">
      <seq>gttctctctctaaagtgtaatttagattttgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaggtccagcgacagatgacgctggttgtagtggtgaaccatttgaaatcacaccttcagagaatctctgcttgcctaaacaatcttctaacgaacatatgaggattagctctattggcaattggcttcagtgccggcaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="63975" stop="59807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63677" g_stop="63116" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63115" i_stop="60327" i_length="2789">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60326" g_stop="60266" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="624" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60265" i_stop="60174" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60173" g_stop="60107" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="691" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E547996" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547996" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63677" e_stop="63116"/>
          <exon e_start="60326" e_stop="60266"/>
          <exon e_start="60173" e_stop="60107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTCATC-AAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCTGTAAGTCCCACTCCTGAAATTTATCTTTCCATACAGCTGCCTGCTCAGTTCTAGGAAAAATTATTTACGAATAACCAAATTATATTGGTCAGAAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCA</genome_strand>
        <mrna_strand>GTTCTCTCTCTAAAGTGTAATTTAGATTTTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT............................................................................................AAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326436" ref_strand="+" ref_description="SGN-E326436 [cTOC-14-O16]">
      <seq>tttgcataaatgatatccattcgtcatcaaagtgtaatttagatggtgggtcttcttcgttgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattctccatctgaaggtgaatcaggacctacagctctcatgttgaaggacaccggttataaaactcgtgttcgtattagcaaaaagtatcaagctgagattcctgactggacaagtccagcgacagatgacgctggttgtagtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="63995" stop="60007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63695" g_stop="63116" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63115" i_stop="60327" i_length="2789">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60326" g_stop="60307" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="600" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E326436" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63695" e_stop="63116"/>
          <exon e_start="60326" e_stop="60307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGAGTATGTTCTACACATCTATCTTTTTTTAATTGTTGTGGATCTTCCTATTGACTTAAGGGAAGTGAAAATGACAACTAGCTTTAAATGGTTTTGTCATGTAGGCAGATAAAACATAATGGGGTATCTCTCATTCTGTTTCTACCTGCTGTAACAGTTTGCACTTATCATTTCAGTTGTTGTGTCTTTTTATTTAATATAGATTATAGATTATAGATGTGATGGATGAGTCCAACTTACAAGTAGTTACAACATAGAGAATTTACACTAAAACATGTTGCTACAAGTACTCTTTTGTCGATGCTAATGTGGGAATTGCATTACGCAACAAAATCTTCACTAATCTCCGCAAGGGAATTGCCTAATCCCTTAGACATCTTCTGTTTCTTTCATCCATGCTGCCACACGAGCTTTGAAAGAGCTACTTCCCTTGTTCCTGTTCTCCATCTCTTCTTTGGAGCTTCCATTATAATAGAAACTTATTGATGGTTCTTGACGTCACCATTTGATACCAAACATACCATACATGTTAACCTATTCGCAATAGTGCAATTGCATAGTCAAGTACTAAGTAGTTAACATTCTCTTTCAGTTCCTTTACATTAGGCCGAATCTTCGACAAACAGCTAAACTTGTTCAAAGCATTTCATAGAGCTAACTAGACTAAGTCTATTACATATTGAACACTAGACGTATGCCCAAACAGTACCTACATGACACATTGCAGATATGGTGCATAACATGGTTATTGATAATGAGCGCTTGAACATGTTAGAAAATGAGTTGTCATGGACTTTATTCTTTCTCATTTCATTCTTTTCTCACTCCTCTCAACAAATAAGACCGATCCCATCATTTTCATGCTTGAACTCCACCAACGAACCATCCCTCCACCCCCTGCTGACCCACTTCATCCATAGACACACGGTTCAGCCCTTCTCTTTTGTCTGTCTGTCTGTCTCTCTCTATACACACACACACACACACACACAACCACCTTTGTACAGAAACACCACAATTCCACTCACACACTGCTCTCTCTATTTTTTGTTGCATCTCTGTTGAATGCCATATTCAAAAAGCCACCATCTTCAGCCGCCCCATCTGCTTGCTCCTTTCATTGGATAAGAGAAACTAAAGCGAGACCTTTGACAATTAAGAGAGGTATTTCTCCACTCCAAGCGATTGGGGTGCTACCTCTTTCCCCTACAATGACAGGGAAATATCGTTCAATTGATAAGTTAGAAGGTGATAAAATTTTCTCCGGTTGAAGTCCTTTGTTAAGTGTAAATGAATAAAGCAACAGTCATGATAGAGTGCAAAGACGAGGGCTATTTAGCTATGATTCTTCGTGGAGAAGAAGCAATCAGTATCAAAGTTGGGTAGTTGATTGCCATTACAGTTGAAGGAAGATTGTATTGCAAAATTTAGTGACTACCAACATTCAAATCAGATTCTATATCTTCAAATTTGATTGTCCTTCTACCACAAAAAAGGGAGAACAGATAAATGGAGAAGAAGAGAGGAAGAAGAAGGGAGAATGTTTTCTCTTAGCTCTTAGATGTAGGTGGGTCTGGATTCAATAGTGGAAAGATAAGAGAAGGAATTGTCTTTTAGGGAAGAAAGATAACACATAGTGAAGTGGGTTGAGAATAATGAGGTCTCAGGTTCACATCAGTGGAGAGACAAAAACAGTACGAGATTTCTTCCACTTGTCCGAACCTTGAGGATAGGGTTACCCATCACCTATGGTGGTGTGAGGTAGCAAGTACCTTGTGGAACTAGTCGAGGTATGTGCAAGCTGGTCCGGCTATCACAATTATTAGAAAAAGATGAATGGGGAGGGGAGTTGGAAAAATAAACTTTTTCCCTTTTTGGATCAGAAGTTCTTTTTTTGTGGGATTTTGTGGGTTTAAGAGCTACATGTCTTTCTTCCAAGGCTTCTTTGTCACATCTGTGTGTAAACTGCTCACATTCTATTTTCTTGATTGTTGCAGCATGTGTCTAATAGGTAAAATTTGAGCACAAGTAGTTTAGATGGCTAGATGAAAAATTCGGACAAGTTTCGATGTTGTCTGTGTATTCACCCTTAACATTAAGCATCAATTGACTTAAATGGTCCTCCTCAAACTTTTGCTGTAATGATGGCACCCAATCAGCTCTTCCATGTGAAAAAGCACTTTTCCATCGATGTTTTCCGGATTCATCATTTTCAGTTGTCATCTGTATTACTTAGTTTATGTATGAATCACTCCTGGTTTTCTCATAGATCTACCTAATGAAACTCTATACGCAAAGAAAGAAATCTTTGGAGATAATTTTTCTTTAAAGGAACTTTGTAATGTCTTTAAAATATTCAAAGCCTATGGTGGCATGTTTCGTGCATCTACAACTCAAAATTCTGTTGGTATTTTTTCTCTTATTTCATAACCTATAATTCTATACCTGCTAGTGCTAGCACACCTTATCTGAAGTCCTAAACTTAAGTATGATTTCTTGAATGCTCGGTGGAATATTAATACTCAGGAGTTTAGCTCAAGAAAAATGGATTAGTGTTAGTGGGGGTAACTATGGCATGTTCATGTTTATTTATCTTCTTAATACCATGGAAACTTATAATGCTCACAGGTTTCGTGCTTCACATGTTCTGATAAGTTCTACTCTAATTTAAGAAAATCTTGAGTGTAGGAATGCTATTAATATTTACTGTTATGATATTGTTATCTATTTGAGCTGTTTGTATCTTTTGAGTGTGTCTGCTGCATTGGTTTTGATGATAAGATTTGATGCAGTGACGCTGGTTGTAGTGGTG</genome_strand>
        <mrna_strand>TTTGCATAAATGATATCCATTCGTCATCAAAGTGTAATTTAGATGGTGGGTCTTCTTCGTTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAAGTCCAGCGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCTGGTTGTAGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325925" ref_strand="+" ref_description="SGN-E325925 [cTOC-12-M12]">
      <seq>tttgcattaattatagccattcgtcatcaaagtgtaatttaggttttgggtcttcttcgttgaagacccttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgttcagaatctacagtgaagatgctaatctgtgataactgtgatgatgcatatcatttatcgtgctgcaaaccccataaaaagatagcacccgaggatgagtggttttgccaaacttgtttgattaagaagcagagagtgctcaagaaatcatcttgtaatgagagttctagcaattcttcatctgaaggtgaatcaagacctacagctctcatgttgaaggacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="63995" stop="62889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63695" g_stop="63189" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E325925" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63695" e_stop="63189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCG</genome_strand>
        <mrna_strand>TTTGCATTAATTATAGCCATTCGTCATCAAAGTGTAATTTAGGTTTTGGGTCTTCTTCGTTGAAGACCCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTTCATCTGAAGGTGAATCAAGACCTACAGCTCTCATGTTGAAGGACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737524" ref_strand="+" ref_description="SGN-E737524 [LC10AH01]">
      <seq>tcggcacgaggctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcaggaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaaccttctatctaaatcaaattcttgtgatggtagacctgaaggggaagagcagtgctctgaagcagcatcaagaagtgatatgcaaaggacttcaaatgtttgcataaatgatagccattcgtcatcaaagtgtaatttggattttgggtcttcttcattgaagacgcttgtggatgatgctggtgagtgctcctcatctggtgctttatttcctgaaagattgggtaataatatgccagaaaaggatatatgcacagcaattcttagaggttatgggttgcttgaaaatgttgtggttacaaaactcggagcatcaacagaagacttttataccagttctgacaactgctgtttaatctcatgcaaagcctgtgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="64502" stop="63115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64212" g_stop="63415" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E737524" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64212" e_stop="63415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACCT-CTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGT</genome_strand>
        <mrna_strand>TCGGCACGAGGCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316481" ref_strand="+" ref_description="SGN-E316481 [cTOA-25-G9]">
      <seq>ccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcaggaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaccttctatctaatcaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="66426" stop="63471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66126" g_stop="66055" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64384" g_stop="63771" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="684" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E316481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66126" e_stop="66055"/>
          <exon e_start="64384" e_stop="63771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTT</genome_strand>
        <mrna_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGG-AACCTTCTATCT-AATCAAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321617" ref_strand="+" ref_description="SGN-E321617 [cTOB-25-D17]">
      <seq>tttggtcgaggccctgtgtgccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattcangaactttgaaggaaggcatagttgctgctgagaaattagctacagcaactcctgttcttctgcctgctgagtgtaacagaggaaaacttctatctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="66446" stop="63479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66146" g_stop="66055" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64384" g_stop="63779" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="698" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E321617" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66146" e_stop="66055"/>
          <exon e_start="64384" e_stop="63779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATC</genome_strand>
        <mrna_strand>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCANGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAAACTTCTATCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273175" ref_strand="+" ref_description="SGN-E273175 [cLEM-24-H6]">
      <seq>tgccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctgaagtccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="66428" stop="63581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66128" g_stop="66055" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64384" g_stop="63881" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="578" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E273175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66128" e_stop="66055"/>
          <exon e_start="64384" e_stop="63881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTC</genome_strand>
        <mrna_strand>TGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312116" ref_strand="+" ref_description="SGN-E312116 [cTOA-11-A19]">
      <seq>ccacttcttccatctccgccagtgccgcacttggtttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaacaacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtacgcgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctctgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="66426" stop="63591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66126" g_stop="66055" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64384" g_stop="63891" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="566" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E312116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66126" e_stop="66055"/>
          <exon e_start="64384" e_stop="63891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTG</genome_strand>
        <mrna_strand>CCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338483" ref_strand="+" ref_description="SGN-E338483 [cTOE-15-P11]">
      <seq>ttcttctgcggtttttcatcttcactttcaaccaaagggagtacaacaaccacaaaaaggctctgatacttcatttgattggatgtataggagcatatcattttggtggatgtaccccgtaagcaagagaaacataattcttttatattagtgtgtggctcaattgatatgctgataaaaagttatctttctggttgcaaagaaacttcttttgcaacctctgtctcatctgagatcacgaaacgagcttcatgcgaccagggttctggtgctgaattgtcagaaatgagtccagaaaaagataaatatcctattgatgtctgtatggaatctgattcaaaggatggtgatccttgttccttaaacagtctagatggtccacgaccttcaactttcagtgccatgcctggaagtttaaagcccatagtatatcgtaggaaaaagttcaaacaaaaccctcgtcctactttcttcattgaaccatcagctgaagttaggcctagcaatggatgcccttctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="66391" stop="63597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66091" g_stop="66055" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64384" g_stop="63897" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="526" r_length="489" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E338483" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66091" e_stop="66055"/>
          <exon e_start="64384" e_stop="63897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAGGTCCATTCTTGAATTGTACTAAACTTTTTTTTGTTTCAAATTCCCCTTTCCCTTTTCTCATATGCAGTACCCTTTTGAAATTTTGATGTTATTTTGCATTGTAAATAGTTAGATTCAAAGCATCTATAGTCCATTGTTGATTAATCTGGTTATGCAATGTCGTTTGATATAATTTACTTTGTGAATGTCTGTTAATGTTATAGAAATACTGCTATAGGTGAATCAGAATTTGTGGGTGACTCTCTATTATCAATTTTTATGTAGGTTAATAGGGTTTTGTTTGATTTTTTTTTGTTATTAGATGTTTACCTTGGTTTCTTGATTCATGTGATTTCTGATGGGTCTTTGTTTCTTGATTTTGTTATGATTTGTGATAGTTGTTAGATATCTGTCTAGTTGCTAGTTGTTCCCTTTGGTGGCAAATCTATAACCCAAAACCCACATTGACTGCTGTGATATGTCAACCTAAACTTATTTGGACCTATAACTATAGATATCAATGTGGGTTCTTTGTTGGAAAACACAATGGTGGATTATTTGATTGAATTGAAACTTGAAAGGGAAATTGCTAAAGTTCTCACCATGTTAAATGAAATCATCATTTGCCTTCTTTGTACTCATGTCTTAAGGATATACATGGGTATGAGTAATTTGGGCAGATCCTTCAAATCACACGAAAACTTCCTAAAAGTTTTAATGTACCTGTACCTGTACCTGATACATACTCCATGCCAGATCCAATCGGAGATAGCTCTATCATATATGCCTTATAGATTTAATGTTCCATTAGGAAAACGAGGACATGACAACTTCTGATAGCATATAGACTTGTTGTCACTTGTCATGAACCAGACAACTGAATGGTATTGCGACGGGACATCTCGCTTGTAATCGTGTAAACCAGGTTTGAATATATGGGACCTACTTTCCCATAAGCAGTGTGTTTACACACTTTGAAGGCCTATAGTCTTAATGGATCCCGTCCCTGAATCAAATGACTGCTACTGAAGGAGCACTGTGTGTGACCAAAAACTTTTATGCAATGAAAATTGGAAACAGCCACAAAATTAGTATCGACGCCTATCCTAAGTGAAAAGAAAAAGTAGAAGTATGACAAATTATCTACTAACAAAAATGTAATAGATACCATTCCCACTGTTTCATTTTATGTAACATTCTTTCATTTTTAGTCGGGTCCAAAAGAATAGGACCTTTCTATAAATGGGAACTCCTTAAATTTAAAAGTCCCATAATGAGATGCTCTTATAACCTCAAGCCCACATGGTACGATTAAGGCCATAAGTTTTAAGGGTACTTTTAATACCTAACAAAAGTTTTCCCTTCTTTCCTAAACTTCGTTCCTTGTCTAACATCACCACATAAAATGAAACATACAGAGTGATTGATTTACATATTTTCATTGTAACTTCATTGTCCATTTTGAGGGACACGTGTTCTTTTTTCCCACGCACATGGTTTTATCAGTTATGATTTCCTTCTTATGCATGTCTACTATTATGTGTTCTTACATGATTTTTGAGAAATCCTACTTATCTTTCCTTTTTAGGGCTGCATTATCCAATATCCTGTAGTTTGAGCAGTAGCATTCCACTTTATATTGATTAATGTTTTGTTCGTCATCTCATTGCAAGTTTCTTCTTTATGATCAGGGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTA-CGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCT</genome_strand>
        <mrna_strand>TTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAACAACCACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACCCCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727261" ref_strand="+" ref_description="SGN-E727261 [LA14AG09]">
      <seq>gtctccggatcgtctggctggagagctgtacttccttgatgatacaatctcttttacacctgaggaactttccagggctccggctgaagtcttaggcagaagcagccatggtacatcatacagggcaacactggagaatgggttgcttctgactgtgaaatggttgagagaaggagtggcgaagcagaggaaggattttgcgaaggaggctaaaaagtttgctaatattaggcatcctaatgtagtaggattaagaggttactactggggtcccacacaacatgagaagctcattctttcggattatatatctcctggaagtcttgcaagtttcctctatgatcggcctggtagaaaaggtccaccactaacctggccccaaagactcaaaatatcagttgatgttgcacgtggcttgaactatctccattttgatcgggaggttccacatggaaatcttaaagcaaccaacatcttgttggatgggcctgaccttaatgcaagggttgcagattactgccttcaccgcctcatgactcaagccggcacaatagaacagattcttgatgcaggagttttgggttatcgtgcccctgagttggctgcatcaaagaaaccactgccttccttcaaatcagatgtatatgcttttggagttattttgttggagctgcttagtggaaaatgtgcaggtgatgttgtctctggcgaagatggcggagtagacttgactgactgggtaaggttgaaggtggcagaaggtcgtagctctgattgttttgataacgttttgtcacctgagttgggaaatccagcaatggagaaagcaatgaangaggttcttggtatagctgtgcgatgcattcgttctatatctgagagacctgggtatcagactatatatgaggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="98177" stop="100308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98477" g_stop="98817" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98818" i_stop="99437" i_length="620">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99438" g_stop="100008" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="912" r_length="571" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E727261" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98477" e_stop="98817"/>
          <exon e_start="99438" e_stop="100008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAGAGTTTACTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATGGTAAGCTTCATGTACTCTAAACTCTCATATTAATGTTTTGCAAATACTTAGTAAAGGTTTTGTGTCCCTGTTTATTCATTTTCCTCTTACTGTGTGATATATCTTACAGTTCATATGGTTTTCCCATGCACATTATATATGAGCACTTTAATCATTGCCATGTGATCCTGTAGTGGGAATTTGTGTGAACGACAGTATTTAGTCCTTGGGTTTGATGTGGTAATCCTTTAGTACATCTAGAGCCCAATATATTATGCATGTCTTTTGTTTATGTAACTTCCACACCAAGTAGTAATACACTATGTCACCATCACCATGTGCTCTTTGTGATGGTCACTACATAGGCTGTCAGGGATTTGCAGTATGGTACTAATTATTTCTAGAAGTTAAAATTCTGTATGTTTGAGTTCTTAATGGATCTGAAGTTGTGATGTTCAGCTTTTGTTTCATGATTGATTTTGTTTGAAATCAGCTAGAATATGATACATTTTCCTTCATTTATGAATCCTTCAACTGGACTTGCTTTCTATTCATTTGACTAACTAAATGTTTTCATTCAGTTGATAATTATATATGTGGTCATTTTCAATAAACTTCTCTAATGTGCTGCATGTTTGTAGATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCT-GGTATCAAGACTATATATGAGGACCT</genome_strand>
        <mrna_strand>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAAAGTTTGCTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGGAAATCCAGCAATGGAGAAAGCAATGAANGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGGTATC-AGACTATATATGAGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715400" ref_strand="+" ref_description="SGN-E715400 [FB14AF12]">
      <seq>tgtctctggcgaacatgtgcggagtagacttgactgactgggtaaggttgaaggtggcagaaggtcgtagctctgattgttttgataacgttttgtcacctgagttggaaaatccagcaatggagaagcaaatgaaggaggttcttggtatagctgtgcgatgcattcgttctatatctgagagacctggtatcaagactatatatgaggacctttcgtctatatagtttgtactcatctggttttgctctactttgggaatcaaatagctcattgacttcccttttgagtagtaggattagcacagttagtgtgtgaatggggctagttttattgaccattgtttgttgtaaattggggcatatttaatgtgtaaacaatcttttctccccgtttggcttatgagcttccaatgtttgtcaattttttggagtaaatacttgtgactttattttcaaagttttgcagcanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="99496" stop="106964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99796" g_stop="100288" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E715400" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99796" e_stop="100288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTGGCGAAGATG-GCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCACATTTTCACAGAACATTTACAGAT</genome_strand>
        <mrna_strand>TGTCTCTGGCGAACATGTGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCANAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376491" ref_strand="+" ref_description="SGN-E376491 [TUS-17-N15](-)">
      <seq>ggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaactttttacctgagttcaattctcatcttctatttccccaaaaaaggagttaagaaagtagtcgttgcaatcgagtttcttactttttttacaccttgtttggatgattgttacctgttttattgtattgtattgttagtttaaatataatgtttgtttcaactgttatttatattctattatatggtatcgttcaaatctatcgttgttatactcattttatgtaacgatttggtgtgattgtgttgttaccttgataatttcttttcattttgtctttatttattatttaataatcatatttcatcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="104224" stop="103003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103924" g_stop="103304" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E376491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103924" e_stop="103304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</genome_strand>
        <mrna_strand>GGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCAATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711698" ref_strand="+" ref_description="SGN-E711698 [FB02CH06]">
      <seq>cgatttgaatgagctagctttggggttagaaaaatgcggattcccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtaggtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaactttttacctgagttcgattctcatcttctatttccccaaaaaaggagttaagaaagtagtcgttgcaatcgagtttcttactttttttacaccttgtttggatgattgttacctgttttattgtattgtattgttagtttaaatataatgtttgtttcaactgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="104474" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104175" g_stop="103449" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="741"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E711698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104175" e_stop="103449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTT</genome_strand>
        <mrna_strand>CGATTTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTCCCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710241" ref_strand="+" ref_description="SGN-E710241 [FA54DA11]">
      <seq>cgatccattggtgttctacctccatctgttgtagttgatcaacaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaattcggattaccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtaggtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatcaaggattgaatacaaggttgttgcaagagaaaggagttggtgtagagataccaagaaatgaaaaagatggatttttcactagtgattcagtggctgaagctgtgaagtttggtgtagtgagtgaagagggtgagttgttgagagctaatgcaagacaaatgagttgtttgtttggagataggaagagaaatgaacaacttattgatgattgtgttggttatttcatggaaaataggataagcaaatctaatagctccatcggttgactatctaacccttttacctgagttcgattctcctccttctatttccccaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="104631" stop="103270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104333" g_stop="103570" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E710241" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104333" e_stop="103570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAA-CTTTTTACCTGAGTTCGATTCTCAT-CTTCTATTTCCCCAAAAAAG</genome_strand>
        <mrna_strand>CGATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAACAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATTCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACCCTTTTACCTGAGTTCGATTCTCCTCCTTCTATTTCCCCAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703622" ref_strand="+" ref_description="SGN-E703622 [FA22AA11]">
      <seq>gcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctgttgtagttgatcaagaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaatgcggattaccattcgtttgggtattaagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatggatacgaagacagagtcaaaaacagaggtgtaatatacaaaggatgggtaccacagacgaagatactgagtcattcgtcagtangtggattcttgactcattgtggatggaattcggtcatagaagcgctatgttttgggcgggttttggttatgttcccggtgttgaatgatccaagattgaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="104956" stop="103575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104656" g_stop="103875" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E703622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104656" e_stop="103875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACA</genome_strand>
        <mrna_strand>GCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTANGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCCAAGATTGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707477" ref_strand="+" ref_description="SGN-E707477 [FA33AE06]">
      <seq>cgtaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctgttgtagttgatcaagaacaagatgacagcaatgatgcgtcgtggtcaggaatcaagagttggctagataagcacaatcaagattctgttgtttatgttgcacttggaactgaagcaacactgaatcaacaagagctgaatgagctagctttggggttagaaaaatgcggattaccattcgtttgggtattagagatcagccaaaacataatcaacaagattcgtgtattcagctgcctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105266" stop="103761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104966" g_stop="104061" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="905" r_length="905" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E707477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104966" e_stop="104061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGA</genome_strand>
        <mrna_strand>CGTAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATT-AGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272131" ref_strand="+" ref_description="SGN-E272131 [cLEN-4-F1]">
      <seq>acgaatcttgttgattatgttttggctgatctcttaatacccaaacgaatggtaatccgcatttttctaaccccaaagctagctcattcagctcttgttgattcagtgttgcttcagttccaagtgcaacataaacaacagaatcttgattgtgcttatctagccaattcttgattcctgaccacgacgcatcattgctgtcatcttgttcatgatcaactacaacagatggaggtagaacaccaatggatataataggtttctgataaagctcagaaaccaagctgaaccattcggattcaaactcaacacaatttcgaaacaatatgacatcacttgcatcaattgaagcaccaaatctggctccatcagatgtacctgattcatcagctggtgcttcgaaattcttcttaatctcatgcagcctatacacaactttcgtttcgaaaggaatccattttggaacaactgtatagtcctcagctattgacctttcatcatttaacaaagcacaaggaggtccataaaatgacatagttgcagcagtaaacagactaaaaaaggcgcgagaaacgcctaatttacctgcaatttgaggtagccagtgagaagcatagtcatagacaatccaatctggtttgggatttgatgaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="103781" stop="105037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104081" g_stop="104737" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E272131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104081" e_stop="104737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAACTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCTTGATCAACTACAACAGATGGAGGTAGCACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATGGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</genome_strand>
        <mrna_strand>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAATTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCATGATCAACTACAACAGATGGAGGTAGAACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATAGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263037" ref_strand="+" ref_description="SGN-E263037 [cLEG-59-O24]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggntcagcttggtttctgagctttatcagaaactattatatccattggtggtctacctccatctggnntgtagtgatcatgaacaagatgacagcaatggatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105359" stop="103967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="104267" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E263037" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="104267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCT-G-TTGTAGTTGATCAAGAACAAGATGACAGCAAT-GATGCGT</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGNTCAGCTTGGTTTCTGAGCTTTATCAGAAA-CTATTATATCCATTGGTGGTCTACCTCCATCTGGNNTGTAG-TGATCATGAACAAGATGACAGCAATGGATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700902" ref_strand="+" ref_description="SGN-E700902 [FA14BH12]">
      <seq>tgagatctttggtttaagaacgaagaaatacttataaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattaatatccattggtgttctacctccatctgttgtagttgatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105442" stop="103988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105142" g_stop="104288" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E700902" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105142" e_stop="104288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATT-ATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAAC</genome_strand>
        <mrna_strand>TGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTAATATCCATTGGTGTTCTACCTCCATCTGTTGTAGTTGATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702599" ref_strand="+" ref_description="SGN-E702599 [FA19AG01]">
      <seq>ctttggtttaagaacgaagaaatacttataaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatatccattggtgttctacctccatctggtgtagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105436" stop="103994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105136" g_stop="104294" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E702599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105136" e_stop="104294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATC</genome_strand>
        <mrna_strand>CTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTTCTACCTCCATCTGGTGTAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212667" ref_strand="+" ref_description="SGN-E212667 [cLEC-73-O1]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaactattatatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105358" stop="104025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="104325" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E212667" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="104325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATT</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAA-CTATTATATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255733" ref_strand="+" ref_description="SGN-E255733 [cLEG-36-N19]">
      <seq>gcaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagaagaatttcgaagcaccagctgatgaatcaggtacatctgatggagccagatttggtgcttcaattgatgcaagtgatgtcatattgtttcgaaattgtgttgagtttgaatccgaatggttcagcttggtttctgagctttatcagaaacctattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105101" stop="104030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104802" g_stop="104330" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E255733" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104802" e_stop="104330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATAT</genome_strand>
        <mrna_strand>GCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212755" ref_strand="+" ref_description="SGN-E212755 [cLEC-73-F22]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattacgcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgacaggtcaatagctgaggactatacagttgttccaaaatggattcctttcgaaacgaaagttgtgtataggctgcatgagattaagatgaatttcgaagcaccagctgatgaatcaggtacatctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105358" stop="104146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="104446" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E212755" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="104446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTACGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGACAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGATGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376492" ref_strand="+" ref_description="SGN-E376492 [TUS-17-N15]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattcctttttaaacgaaagttgtgtataggctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105358" stop="104198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="104498" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E376492" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="104498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTTTAAACGAAAGTTGTGTATAGGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717686" ref_strand="+" ref_description="SGN-E717686 [FC02BG10]">
      <seq>ttttaacatttattcccttccacgtttgtattagggtcttattaaatactttttttaatttattctgggtttgtattaggatctcactaaatttaaattcatatgataaaattacacattaagatcacttcatattcagaatcgaatatgagatctttggtttaagaacgaagaaatacttacaaattaacaggttatttgttcgttcaatagtcctaacttccttcgatggagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggccatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgggtggtttcaattgcctaaagttgaaaacttgccggatgatgcagagtcatcgatggatattccttaccaaaaagctcagttcttgaagatagctttcgattcgctcgaaatcccactgaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaaccatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacagttgttccaaaatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105590" stop="104231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105290" g_stop="104531" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E717686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105290" e_stop="104531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACATTTATTTCATTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGTGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTC</genome_strand>
        <mrna_strand>TTTTAACATTTATTCCCTTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGGGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTACAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGGGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208245" ref_strand="+" ref_description="SGN-E208245 [cLEC-37-H19]">
      <seq>agaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaaaggtcaatagctgaggactatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105358" stop="104249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="104549" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E208245" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="104549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAG</genome_strand>
        <mrna_strand>AGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305203" ref_strand="+" ref_description="SGN-E305203 [cLEY-18-P24]">
      <seq>tcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgccttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105339" stop="104274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105039" g_stop="104574" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E305203" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105039" e_stop="104574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAA</genome_strand>
        <mrna_strand>TCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254676" ref_strand="+" ref_description="SGN-E254676 [cLEG-29-B19]">
      <seq>gggagaatgaaaaagataaacttcatgttgtgatgtttcgatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105360" stop="104275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105061" g_stop="104575" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E254676" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105061" e_stop="104575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</genome_strand>
        <mrna_strand>GGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCGATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256435" ref_strand="+" ref_description="SGN-E256435 [cLEG-38-I24]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcgtcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagttcatcaaatcccaaaccagattggattgtctatgactatgcttctcactggctacctcaaattgcaggtaaattaggcgtttctcgcgcctttttttagtctgtttactgctgcaactatgtcattttatggacctccttgtgctttgttaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105359" stop="104275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="104575" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E256435" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="104575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCC-TTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTTAGTCTGTTTACTGCTGCAACTATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258518" ref_strand="+" ref_description="SGN-E258518 [cLEG-47-A16]">
      <seq>gagaatgaaaaagataaacttcatgttgtgatgtttccatggctagccatgggacatatcatacctttttttcatctatcaaagtgtttagcacgaaggggtcatagagtcaccttcatttcaactccaagaaacattgaaagagtcatcaataaagttccctctgatcttgctcatctgttgcatattgtgtgttttcatttgcctaaagttgaaaacttgccggatgatgcagagtcatcaatggacataccttaccaaaaagctcagttcttgaagatagctttcgattcgcttgaaatcccattaaccaattatcttgagagatcatctaatcccaaaccagattggattggctatgactatgcttctcactggctacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="105359" stop="104376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="104676" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E258518" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="104676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCT</genome_strand>
        <mrna_strand>GAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGTCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCATCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGTTTTCATTTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCAATGGACATACCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTTGAAATCCCATTAACCAATTATCTTGAGAGATCATCTAATCCCAAACCAGATTGGATTGGCTATGACTATGCTTCTCACTGGCTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690301" ref_strand="+" ref_description="SGN-E690301 [LH_Ea03C11]">
      <seq>ttatttcacagagagctcttgctcgtgctgcaaagatacttcattcaaaactcaatggaaatatagaagctgaacaaccaatcaacagtatcaagtctgcaatactatatgatggttcgattttgtcttgtgattctcggttgtgtggatatgatattgcaacctgcttggaggtgattgaacacatggaggaacatgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccccagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacatcaattctgtgaatgggcatctgagctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttaggagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatccttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacacacatactatatttttaaataacaccctttgaaaaatatatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="113454" stop="109960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113155" g_stop="113121" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113120" i_stop="112050" i_length="1071">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112049" g_stop="111912" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="173" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111911" i_stop="110945" i_length="967">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110944" g_stop="110421" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="688" r_length="515" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110420" i_stop="110310" i_length="111">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.750" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110309" g_stop="110266" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="732" r_length="44" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="779"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E690301" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113155" e_stop="113121"/>
          <exon e_start="112049" e_stop="111912"/>
          <exon e_start="110944" e_stop="110421"/>
          <exon e_start="110309" e_stop="110266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAGGTCTGATGCATTCACAGCCCTTTGACACTGCTTTTTTGCTATCCTAATCTCTCTGTAACTGACCTATAACTAATTCTTTTACTGCATTTCTTTTTATTGGCAATGATAATCAGAGCTTGTGCATTTTCTATCTTAACCGTAGGTTTGAAACTGAACCTGTTATTCAAGTGAGAAAATTCAGGAACTGCAATGGTTATCTTCTGTCAATCCAATATTAAGATATTATCTTGTGTCATCAACTAAATCCAATTTAGCCTATAATTTCAGTGTGACATTTTACTATTTGATAGTTAATGACATTATATTTGGATTGTCAAAGCTAGAAAGATGTTTCCTAGGCCAAAATGTCAAGGTCCTTTTACCTGTCAAAAGTATCTATATGAAATATGCACACTGAGGCACGTGTGTCTATTTCCTTGCTATATATATATGTTCATGATATAGGTTTTCTCTATATCCATATTCTGGCATTGGAAGCTCCGAAGTAGATAATATTTTTAATTTGTGGTGGTATATGGTTATAGAGTCTGGAAAAATAGTTTCATGTAATGAATTACATGGAAGTGAAAAAGATCTTTTCTCCTTTTTTTCTTTTTGGAATGGAAAGCAACTTCATACCATCATCAATATCATTGGTTGTTTTTAGACTATCAGAACAGTTAAACTAATGAGGTCAAAAATGTCAGCTCAAGATGCTAAAAAAATTCTGAAGATCTTTAAAAACTACAATTAACTTCTAAATTTTTTGCACTGATGGAGCATAGTTCTATACTTAGTGTCTACCACATGCAGAATGTATATGATGTTGATAGCTTTTAGGACTTCCTCAGTTATCTCTCGAATTAGAGTAGGTGGGAACTGACTTTTGTAAAGTTCCTGGATATGGATACTGAAACACTTTTTAGAACCTGATGTGACCCACTGCAACAATGTATTGTTGCGGTTTTGTTTGTATAAAATGTTAATCATCAAAAGAAGGCCAAAAAGAAGACCAGTCACATGCATTACCGGTCTCAAATTATTATTAGACTTTTATTTATGGTTTCACCTAAGATAATTTTTAACTTCCAGATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAGGTAATCAGTTTCTCTTCTATTGATTGTTACATAGCTTTTAAGATGTTGTACTGATTTTTTTTTTCTTTAAAAAGATCAACTTCCGGGCATTTCGAGTTTCATGAAATATTTGTGTAAAACTGCTGATGAACTTTATATCCATCCTCAAAATGAAGTCTATGGCTGGTTATATGTACAGTATTTTTCATTGAAGCAACTGAGTTGATCGGTGAACTCTGTGATATGATCTGTCAACTTGATCGCTATAGATGGTTTAGTGTGTTAGATATCATGTACTCGTGTATTAGTATTTGAGGTCAGAAGGTAGATATTCTGGAGCAGTAAATAGTATGTGATCTGAAGTGTTTATTCAGAGGAAGCCGTTTTCTGAACCTTGCCATTATCTTAAGTTAGAGGCTGGTGTAAGTGGCATCTTCAAAACTTGTATGTATTTGATTTATAGCAGAGAGCAGACAGGTTTTTCTGCTTCCTTGACATCTGAAAACTGGCAGAGATATGGCACGTTCATTCGCCTACCAGAAGAGTACAGAGCTTAGCACTCATTACGAGGGAGGAAGGGAGGGAGGGGAAATTAGAAACTGAGTTTTCATTATGGGTATAGTGCTGGCAGATTTCTTCAATATTTCTACTCCTATGTGATGAACTATATTGGAGCGGGTGGTTCTTATCGTTATGATTGGTTCAATTTAATTTGTTTTAGTTTCACTATGAATAATGATGTGATGATATTTTCTAGTAGTTCAGTAGTGTCTAACCACTTAAAACACATAATCTCTAAGTTTGAAGAAATTAGTCTTGCTAGGGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>TTATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAACACATGGAGGAACATGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACATCAATTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGGAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694141" ref_strand="+" ref_description="SGN-E694141 [LH_Ea03C11](-)">
      <seq>atatttcacagagagctcttgctcgtgctgcaaagatacttcattcaaaactcaatggaaatatagaagctgaacaaccaatcaacagtatcaagtctgcaatactatatgatggttcgattttgtcttgtgattctcggttgtgtggatatgatattgcaacctgcttggaggtgattgaacacatggaggaacatgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccccagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacatcaattctgtgaatgggcatctgagctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttaggagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatccttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacacacatactatatttttaaataacacccttgaaaaatatatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="113455" stop="109960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113155" g_stop="113121" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113120" i_stop="112050" i_length="1071">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112049" g_stop="111912" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="173" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111911" i_stop="110945" i_length="967">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110944" g_stop="110421" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="688" r_length="515" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110420" i_stop="110310" i_length="111">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.750" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110309" g_stop="110266" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="732" r_length="44" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="784"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E694141" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113155" e_stop="113121"/>
          <exon e_start="112049" e_stop="111912"/>
          <exon e_start="110944" e_stop="110421"/>
          <exon e_start="110309" e_stop="110266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAGGTCTGATGCATTCACAGCCCTTTGACACTGCTTTTTTGCTATCCTAATCTCTCTGTAACTGACCTATAACTAATTCTTTTACTGCATTTCTTTTTATTGGCAATGATAATCAGAGCTTGTGCATTTTCTATCTTAACCGTAGGTTTGAAACTGAACCTGTTATTCAAGTGAGAAAATTCAGGAACTGCAATGGTTATCTTCTGTCAATCCAATATTAAGATATTATCTTGTGTCATCAACTAAATCCAATTTAGCCTATAATTTCAGTGTGACATTTTACTATTTGATAGTTAATGACATTATATTTGGATTGTCAAAGCTAGAAAGATGTTTCCTAGGCCAAAATGTCAAGGTCCTTTTACCTGTCAAAAGTATCTATATGAAATATGCACACTGAGGCACGTGTGTCTATTTCCTTGCTATATATATATGTTCATGATATAGGTTTTCTCTATATCCATATTCTGGCATTGGAAGCTCCGAAGTAGATAATATTTTTAATTTGTGGTGGTATATGGTTATAGAGTCTGGAAAAATAGTTTCATGTAATGAATTACATGGAAGTGAAAAAGATCTTTTCTCCTTTTTTTCTTTTTGGAATGGAAAGCAACTTCATACCATCATCAATATCATTGGTTGTTTTTAGACTATCAGAACAGTTAAACTAATGAGGTCAAAAATGTCAGCTCAAGATGCTAAAAAAATTCTGAAGATCTTTAAAAACTACAATTAACTTCTAAATTTTTTGCACTGATGGAGCATAGTTCTATACTTAGTGTCTACCACATGCAGAATGTATATGATGTTGATAGCTTTTAGGACTTCCTCAGTTATCTCTCGAATTAGAGTAGGTGGGAACTGACTTTTGTAAAGTTCCTGGATATGGATACTGAAACACTTTTTAGAACCTGATGTGACCCACTGCAACAATGTATTGTTGCGGTTTTGTTTGTATAAAATGTTAATCATCAAAAGAAGGCCAAAAAGAAGACCAGTCACATGCATTACCGGTCTCAAATTATTATTAGACTTTTATTTATGGTTTCACCTAAGATAATTTTTAACTTCCAGATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAGGTAATCAGTTTCTCTTCTATTGATTGTTACATAGCTTTTAAGATGTTGTACTGATTTTTTTTTTCTTTAAAAAGATCAACTTCCGGGCATTTCGAGTTTCATGAAATATTTGTGTAAAACTGCTGATGAACTTTATATCCATCCTCAAAATGAAGTCTATGGCTGGTTATATGTACAGTATTTTTCATTGAAGCAACTGAGTTGATCGGTGAACTCTGTGATATGATCTGTCAACTTGATCGCTATAGATGGTTTAGTGTGTTAGATATCATGTACTCGTGTATTAGTATTTGAGGTCAGAAGGTAGATATTCTGGAGCAGTAAATAGTATGTGATCTGAAGTGTTTATTCAGAGGAAGCCGTTTTCTGAACCTTGCCATTATCTTAAGTTAGAGGCTGGTGTAAGTGGCATCTTCAAAACTTGTATGTATTTGATTTATAGCAGAGAGCAGACAGGTTTTTCTGCTTCCTTGACATCTGAAAACTGGCAGAGATATGGCACGTTCATTCGCCTACCAGAAGAGTACAGAGCTTAGCACTCATTACGAGGGAGGAAGGGAGGGAGGGGAAATTAGAAACTGAGTTTTCATTATGGGTATAGTGCTGGCAGATTTCTTCAATATTTCTACTCCTATGTGATGAACTATATTGGAGCGGGTGGTTCTTATCGTTATGATTGGTTCAATTTAATTTGTTTTAGTTTCACTATGAATAATGATGTGATGATATTTTCTAGTAGTTCAGTAGTGTCTAACCACTTAAAACACATAATCTCTAAGTTTGAAGAAATTAGTCTTGCTAGGGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAACACATGGAGGAACATGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACATCAATTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGGAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545972" ref_strand="+" ref_description="SGN-E545972 [TUS-69-B14](-)">
      <seq>ggaggtgattgaacacatggaggaacccgacgcatgtttgtttggggatattgttctccgttcattttgtccacagattcttatagtctccactcccaattatgaatacaatgtgattctccagaaatctactccacagtaccaggaggatgacccagatgagaagagccagcagcagttatgcaaattccgcaatcacgatcacaagtttgagtggactagacagcaattctgtgaatgggcatctgatctagctttaaggcataattatgctgtcgagttcagtggtgttgggggagaagctaacaaagaaccaggatttgcctcccaaattgctgtttttagaagaaacgatagcagtcccgtgaatgcagattttcctgaacactatgatgttatatgggaatggagtagtgacaataaatagttcattttggttagtgatgtggactccagaagctataggaattccttcatactttgtaatctttacctaaatatgcttgaaattgtagtagtagagatggtctgttgtgaggtcatactcatagttacagacacactatatttttatataacacccttcaaaaatatatttagttgacttttacccccttttagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="111246" stop="109960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111109" g_stop="111106" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111105" i_stop="110945" i_length="161">
            <donor d_prob="0.720" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110944" g_stop="110421" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="519" r_length="515" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110420" i_stop="110310" i_length="111">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.750" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110309" g_stop="110266" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="563" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E545972" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111109" e_stop="111106"/>
          <exon e_start="110944" e_stop="110421"/>
          <exon e_start="110309" e_stop="110266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGAGTGATGCATCAATGATGCTTCCAACGTTCTTTATTGGCACTTATGTTGTGTTAAGTGTGATATTTTCTGCATTATATATTTTTGGATTCTGTCTTTTCTTTCCTCCATAGAATCTTTATAGCATTAACACATAGCTGGGAATTTTGATCAACTATAGGTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGAAATTATATACATTGCTTAGAAAGGTACAAACAATACTCCTTAACTCATGACTAGAAAGTTTTATACTTGAACTTTAGTTTTGTTCCATTTTTCTCTAACCTTCACTTGTAGAGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</genome_strand>
        <mrna_strand>GGAG.................................................................................................................................................................GTGATTGAACACATGGAGGAACCCGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCACAGTACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAATTCTGTGAATGGGCATCTGATCTAGCTTTAAGGCATAATTATGCTGTCGAGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATAGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAG-T--TCATTTT--GGTTAG-TGATGTGGACTCCAGAAG-CTA-T-AGGAATTCCTTCATACTTTGTAATCTTTACCTAAATATGCTTGAAATTGTAGTAGT...............................................................................................................AGAGATGGTCTGTTGTGAGGTCATACTCATAGTTACAGACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545973" ref_strand="+" ref_description="SGN-E545973 [TUS-69-B14]">
      <seq>tgaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatcatttcattattgtcttcaggtacttgcttaatgaaatgtgaagtcactttgctgcgtgtgacagtacccctggaggatagaatggaacaggccttattctctcccccattatcaaaacaacgtgttggatatgcggtgcagcaaattagaaaatcttgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="114537" stop="113023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114237" g_stop="113638" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113637" i_stop="113466" i_length="172">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113465" g_stop="113323" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="743" r_length="143" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E545973" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114237" e_stop="113638"/>
          <exon e_start="113465" e_stop="113323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAGGTAAAGTTAGGCATCTGTGTCATTTTATTCTGATTGCTTTGCCCTATTTGTATTGGTTTCTAATATAGAACATGCTTTCCGCTGATCACTTATCGTGTCCAAACCATTTAAAGTTTCTGATGTGTTCCTGTAATCTGAAGTTCCCTCTCCTCTCTGGACTCTCTGGAGGCAGGTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGAATATGCGGTGCAGCACATTAGAGAATCTTGTGCT</genome_strand>
        <mrna_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG............................................................................................................................................................................GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGGATATGCGGTGCAGCAAATTAGAAAATCTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545966" ref_strand="+" ref_description="SGN-E545966 [TUS-69-B10]">
      <seq>tgaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatcatttcattattgtcttcaggtacttgcttaatgaaatgtgaagtcactttgctgcgtgtgacagtacccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="114537" stop="113112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114237" g_stop="113638" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113637" i_stop="113466" i_length="172">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113465" g_stop="113412" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E545966" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114237" e_stop="113638"/>
          <exon e_start="113465" e_stop="113412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAGGTAAAGTTAGGCATCTGTGTCATTTTATTCTGATTGCTTTGCCCTATTTGTATTGGTTTCTAATATAGAACATGCTTTCCGCTGATCACTTATCGTGTCCAAACCATTTAAAGTTTCTGATGTGTTCCTGTAATCTGAAGTTCCCTCTCCTCTCTGGACTCTCTGGAGGCAGGTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGG</genome_strand>
        <mrna_strand>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG............................................................................................................................................................................GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359125" ref_strand="+" ref_description="SGN-E359125 [cLHT-11-L4]">
      <seq>gaagatatactccaagtgccaggaattaattctgctgtgttcaccaaaggaatcttataagaaacagattgatgcaatgcatagtactgccttaaaagttctctcatggttggatagatttcttgataaagttgatatgtctgtggaagagatcacatcatctgcaaagggatttgatattcttatttatcctcaacagcttgttaaggagttcacattatgccaaactttgcccaaatatcagtggggcagtgcaatactagcaggaaacttcgtgtgtcctagctactctaatgtacagaataacacacttgaagaagaattatcatctggaacgactccatctagtgggtctttggtgtgtgtgacttacaagatatatttagccacggaaagggaatgcattatggaacatcttgaagggtctgaagagtttgagtttgagattggcagtggagccgtatctcctgttcttgaagcagttgtaacacagatgtctgttgaccagtctgcatgttttactatggaattgcctgcaaaagagattgttctagcagtggctcatgattctgcaaatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="114536" stop="113356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114236" g_stop="113656" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E359125" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114236" e_stop="113656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCA</genome_strand>
        <mrna_strand>GAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGCCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAATACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGGTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGTGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCTGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="+" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="121332" stop="122376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121632" g_stop="122072" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121632" e_stop="122072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACACAAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAG-AAAAAA-ATAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCTCTAAATA-ATTTTTT-CAAAAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGACAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAACCACTTTTATAACGAGGGGTATATCAGCTTCAAATAACAAAGTTTAGGGGTATATCAGACCCTTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAAT--ACACAC-AAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203566" ref_strand="+" ref_description="SGN-E203566 [cLEC-15-J16]">
      <seq>atgtcttgacccttgttatattcttgcttcttgtctcagatactaaatatttggagggaatttttattgagtctgaatttggattatcttcaaacatgtcttttccatggaagaagttgaagaagacaagtatatctcaattggtgaaggaccatattcattctcaaaaacctcttatggtggaaactggtttcccttcttcccttgtggatctttttgtcaagaatcgtcgaaagttcatgaaaacttccaagaaaaagagggctccttcagtggtggctgagctccctttaagttctctttcgactccaccttcccctgtatgttgcatatttgagaagtctgagttaaaggggtgtcaggaaaaagatgaaagatttgatcttgatgaagctgttgataaaaacacggtgttagtcgcgcttctgaaggtctttctggtggtgtttttggttttaggaacaaagaaacttgtaatgggaataacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="126213" stop="125122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125913" g_stop="125422" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E203566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125913" e_stop="125422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTCCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</genome_strand>
        <mrna_strand>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTTCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355531" ref_strand="+" ref_description="SGN-E355531 [cTOS-25-O10]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaggttgtatttaattttatcattgggctgtatgttggccatttatttgtaccttgtaccagtttggcaattggaaaaatcctgttgattcatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="128571" stop="126389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128271" g_stop="128214" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127113" g_stop="126689" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="630" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E355531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128271" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="126689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349897" ref_strand="+" ref_description="SGN-E349897 [cTOS-3-M1]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaagttgtatttaattttatcattgggctggatgttggccatttatttgtaccttgtaccaatttggcaattggaaaaatcctgttgattcatgcaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="128571" stop="126385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128271" g_stop="128214" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127113" g_stop="126693" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="642"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E349897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128271" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="126693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAAGTTGTATTTAATTTTATCATTGGGCTGGATGTTGGCCATTTATTTGTACCTTGTACCAATTTGGCAATTGGAAAAATCCTGTTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353134" ref_strand="+" ref_description="SGN-E353134 [cTOS-14-E7]">
      <seq>catggatggtctacggctggtttttcctcccgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctaggttgtatttaattttatcattgggctgtatgttggccatttatttgtaccttgtaccagtttggcaattggaaaaatcctgttgattcatgcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="128571" stop="126385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128271" g_stop="128214" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="205" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127113" g_stop="126693" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="641"/>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E353134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128271" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="126693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</genome_strand>
        <mrna_strand>CATGGATGGTCTACGGCTGGTTTTTCCTCCCGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703908" ref_strand="+" ref_description="SGN-E703908 [FA22DC06]">
      <seq>caagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgctacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcgaaacaattgtgctcatcagtccatctagggtgtatttaattttatcattgggctgtatgttggccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="129172" stop="126442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128872" g_stop="128804" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="266" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128319" g_stop="128214" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="372" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="519" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127113" g_stop="126742" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="891" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E703908" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128872" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="126742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTT</genome_strand>
        <mrna_strand>CAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGGTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278073" ref_strand="-" ref_description="SGN-E278073 [cLER-4-O5]">
      <seq>caacagttgaagtgcctaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttatgggacaaagtgtttggaactctaccacattcaaaatcagccaagaacagatgattcccttcggataggagaatcacagcactaagtactttttattagaagggttagaattattatttttttctttgaaatccagttccagtcttttcattttgccactatgttcatgttacagtttaattggaacttggcattccatccttgtgacaacttgtgtaagggttacgtaaccgtgctgcaaaacaattgtgctcatcagtccatntaggttgtatttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="127846" stop="126471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127546" g_stop="127518" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127113" g_stop="126771" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="371" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E278073" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127546" e_stop="127518"/>
          <exon e_start="127113" e_stop="126771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAAT</genome_strand>
        <mrna_strand>CAACAGTTGAAGTGCCT-AAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTATGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGTTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCAAAACAATTGTGCTCATCAGTCCATNTAGGTTGTATTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709423" ref_strand="+" ref_description="SGN-E709423 [FA51DH11]">
      <seq>cccgtcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttcgtatccagaacaaaggttttggtatcacctcttccttctgggacaaagtgtttggaactctaccacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131493" stop="126720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131194" g_stop="131103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="162" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="255" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="452" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128214" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="558" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="705" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="127113" g_stop="127020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="799" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E709423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131194" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="127020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATT</genome_strand>
        <mrna_strand>CCCGTCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710371" ref_strand="+" ref_description="SGN-E710371 [FA55AH09]">
      <seq>ccattagtagagtgttttgtggtctgcacatagagagggcaccacttaaagatcctttcaattgagcaaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccaaaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131493" stop="126789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131193" g_stop="131103" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.96"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="161" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="254" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="451" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128214" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="557" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="704" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="127113" g_stop="127089" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="729" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E710371" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131193" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="127089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATCATTTTC</genome_strand>
        <mrna_strand>CCATTAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAAAGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAAAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342918" ref_strand="+" ref_description="SGN-E342918 [cTOF-11-C8]">
      <seq>gccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactactgctcctgctttgtttggaggcggtttattgggctatgttatgtatgatgtaacccactactacttgcatcacgggcaaccaacagttgaagtgcctaaaaatctcaagaaatatcacttgaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131494" stop="126795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131194" g_stop="131103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="161" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="254" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="451" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128214" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="557" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127664" g_stop="127518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="704" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="127113" g_stop="127095" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="723" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E342918" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131194" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128214"/>
          <exon e_start="127664" e_stop="127518"/>
          <exon e_start="127113" e_stop="127095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAGGTAAGAGGATATGTTTGTTAACATCTCCCCAACGGCTTCATTGTGGTTTTTCAGAGAGTTTTTGGTGATGTCTCCTGTCAGGTGTAATAATGTGTTTGAGAAGATATTTTTTAGACCCTGCTGGTTTCTTTGTTTTAACCTTTTCAACTACTAACAGGAGAATCGTTATACCATTGCAAATTATGTTTTCACTTGTGGTACTTGAGAGTAGAAACTGTTGTTTCAGGTTATAGTTTGTGGTTCAATCCTGTCTTAACGGTAATTAAGAAGTGTCTGCCTGGGGTTTATCGTGGGTTAGGGTTGTGTTGAAGTGATATTTTCATCTCAATTTATGAATCTCGATAAGATGCAGTGTTCAACCTGTTCTATGATCTAACAAGTGATCTTTTGCCCTTCTTTCACAGAAATATCACTTGAATCATC</genome_strand>
        <mrna_strand>GCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAA-AAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCACTTGAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319937" ref_strand="+" ref_description="SGN-E319937 [cTOB-12-P22]">
      <seq>tggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctacggctggtttttcctcctgctgcaacggctattctcctcgtaccattctggaacttgatcaaattgctggcaactcccactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131474" stop="127326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131174" g_stop="131103" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="141" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="234" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="431" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128214" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="537" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127664" g_stop="127626" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="576" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E319937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131174" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128214"/>
          <exon e_start="127664" e_stop="127626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCAGTACGTGAGATTTAATATCTTAGCATTGTTTTATATTTTATCCTGAGAACCTTGTTTGTTTTTTGATTTTTTGTAATTTCACACAAATCTAGAAGATCCCAATTTCAAATGGTTAAAACCGCTTTTCGTGAAATAAAAGATAATTACTCTCTCCATTCGTCAATTGTTGCTACATATGGTTTTCGGAGGTCAAGCAATGCATTGGCAAGGCCATTTCATCTGCCTAATTATTGAAGAGAAACACTAAAAAGAATTAAGCACTTGGAGGGTATACATCAGATATTACATGAAAATCCACTTGACAAATTCTAGTTTAATTTTGGAAGAGTCTACATGGCCGTAGCAACTAAAGGGATATAATACTAGTCTACATCAACAGCTAGTCAAAGTTGGTAGTTTCTATACAAAATGTTGCAAGTTGAAAATCATAGGCTCTTATTATTTGCTTTCCCCAAATGACATTGATCACGACTACACTTATGCTGAATTTTGGGGGTGTGCTGAAGAGCAATGATTATTTGCTTTTGATACTGTACTTTGTAATTGCAGTTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACT</genome_strand>
        <mrna_strand>TGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240677" ref_strand="+" ref_description="SGN-E240677 [cLED-21-E18]">
      <seq>gaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="129181" stop="127958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128881" g_stop="128804" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="275" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128319" g_stop="128258" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="337" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E240677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128881" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTAC</genome_strand>
        <mrna_strand>GAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285048" ref_strand="+" ref_description="SGN-E285048 [cLER-19-B2]">
      <seq>atattcaatcaacatcacacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131515" stop="127959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131215" g_stop="131103" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="182" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="275" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="472" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128259" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="533" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E285048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131215" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</genome_strand>
        <mrna_strand>ATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267028" ref_strand="+" ref_description="SGN-E267028 [cLEI-4-G1]">
      <seq>gagttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagcatcccatggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131482" stop="127959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131182" g_stop="131103" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="149" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="242" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="439" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128259" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="500" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E267028" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131182" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</genome_strand>
        <mrna_strand>GAGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365340" ref_strand="+" ref_description="SGN-E365340 [cLPT-2-J17]">
      <seq>agtaaacaactcctaaaaatattcaatcaacatcatacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcgattgagcaaaaaaaaaatctgcatttttctataaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctccgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgntttcttttccatatcaatacaacgagctattggggaaacactattcattatcttcttcatggctgtcatcataagcatcccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131526" stop="127966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131235" g_stop="131103" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.94"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="202" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="295" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="492" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128266" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E365340" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131235" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</genome_strand>
        <mrna_strand>AGTAAA--CAACTCCTAAAAATATTCAATCAACATCATACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCGATTGAGCAAAAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCCGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGNTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACTATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277558" ref_strand="+" ref_description="SGN-E277558 [cLER-6-A22]">
      <seq>agtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggagtttctgactcgcacagtttggtgggcaattcctaccatatggcttccagttgtgtgctatagcatctctgtttctatccgtatgggtcgtactgttccagaggtggcactgttggtggtttttggcattttcatctggacactgatggaatacactcttcatcgttttcttttccatatcaatacaacgagctattggggaaacacaattcattatcttcttcatggctgtcatcataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131488" stop="127975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131188" g_stop="131103" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="155" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="248" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128426" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="445" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128319" g_stop="128275" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="490" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E277558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131188" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128426"/>
          <exon e_start="128319" e_stop="128275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTGGTTAGTGCTCTCCCTGTTCTTTTAGTAACCTGAGAAGGGAATGTTCTTCTAGCCCTCTGCTTCAGGTTCTTTATTCCTGTGTGCTTAAACTGATCTTTTGTTACAGGGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCA</genome_strand>
        <mrna_strand>AGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAA-TCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG..........................................................................................................GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279374" ref_strand="-" ref_description="SGN-E279374 [cLEL-4-P22](-)">
      <seq>gcacgagaaaatattcaatcaacatcacacagccagcagtagagtgttttgtggtctgcacatagagagggcaccacttagggatcctttcaattgagcaaaaaaaatctgcatttttctatcaattagctggtgtccacgatggttgcacaaggcttcactgtggatttagataagccacttgtacaccaggttggccaccttggagaagcttatcaagagtgggttcaccagcccattgtcagcaaggaaggtcctcgattttttgctagtgacttttgggaagtttctgactcgcacagtttgggtgggcaattcctaccatatggcttccagntggtgtgctatagcatcttctgtttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0027B01-K0tdx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0027B01.1" temp_strand="-" temp_description="C02HBa0027B01.1  AC215362.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0027B01 sequenced_by:kribb upload_account_name:korea">
        <position start="131522" stop="128246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131225" g_stop="131103" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129553" g_stop="129484" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="192" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128896" g_stop="128804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="286" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.882" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128622" g_stop="128546" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0027B01.1" gen_strand="-" ref_id="SGN-E279374" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0027B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131225" e_stop="131103"/>
          <exon e_start="129553" e_stop="129484"/>
          <exon e_start="128896" e_stop="128804"/>
          <exon e_start="128622" e_stop="128546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTATGTAAGTATCTTCTTGATTCTCTTTGTTATGGTTGGGTTTTGGCCATTTGTGAAATAGATCTCTGTTGTTAGAGTATTTGGGGTTTTGAGATTTATGGTTTTTTAATGTCTGGTGGTGTGAATGTACAAAAAAAATTGAATCTTTACATGTAAATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTGAGGTCTGCATACACTATGTACCCTCCCTAGACCCTACTTGTGGGATTTCAATGGGTATGTTGTTGTTGTTGTATATTTGTTAATTGAATTGTTGAAGTTCTTTATGTATCTACAAGGGTTTTGATGTTCTTTATGTATCTTTACATGTATATTGAATTATTGAAGTTCATATATGTAAATTGAATCTGAGGTGTAAGGTCTGCATACAATATGAACCCTCCTTAGACCCTAATTGTGGGATTTCAATGGGTATGTTGTTGTTGTATATTTGTAAATTGAATTGTTGAAGTTCTTTATGTATTTACAAGGGTTTCGATGTAATTCATGATGTTTACTTGAAGAATTAAAGGCTTATAGATGTCATGACTGATCCAAGTATATGATTTTAAGCAAGTTGCTTTTGTGTATTTTATGCATTGGGGCTTTAATATTATCAAATCTACGGTGTGATTTAACTAATCGATTACGTTTTGTGTCTTGTTATTCTTTCTTTTTTGGGTCAAAGAACATAAAAAGATAATCTGAAGGTGATTTGAGAATGTATGAATTTCTCTGCCTGTAAAAATGATAATTGATACATTCATTTCATGTTTGTAAAGGAGATCATTTTCAAGTATTTTTTTTCTGCCAATCTGCTAAGACTGATATACTGAAAAATTGATGCATTCTTCTATAAACTGAATGTTATGAAAATCGATAGCTTGTGTGCTTGAGGGCAAAATTTTAAATATTCGAGCCTGAGTTGATACTTTCTGCAATCTCTTTTCTTGCTTGTTTATTTACAATTTATGGTTACTGTGAAGCTCTTACTGTTGTTTCATTTGAATGAGAGTAAAATAATGATATATGGACTCATCGCTTCTTTTTTTCTTGATTTTTGCAATTTCATTTGACATCATATATAAGTTATTTGATGTTTGCTTGATCAAATACTCTTGTCTCATATAAAAAAGGAAATGTGCATTGCACAGTTTACCAAAAGTTACCTTGAAAATAGTTGCAATTAAGTAGGCCAAGCTATATTTGGTTGAGTTAGTAGTTCTCCAGGAGCACCCTGAAGTAAATATAACATGAAATCTTGTCTGGACTCAATCGTGGAGCTACTTAATTAGCTTAAATGCCCAAAGAGATGGAATAACTCACCAAGCGCCAAGATGTGTTAACGAGTAAATTTTTTAAAGATAAAATCATCAAATAGGACCTTGTGGATGGCTATATGATCTGTCTTCTATTTTCTTTATTGGAACTGTTCTCATCTCAATAGGTGCTCTTGAACTTCTTATTGAATATCTCACGTAGAAACATATCTTAGCAGCCTTCTAACTACATTCTGTTTCCTTTGCTATATCTAGCAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAGGTAAAACTCTACAATCTACATCTTATATTTATTTTCTTCCGTCCTATTTTATTTATTACCTAACTTGGGGGAAGTAAATGGTTTTTTAACTACATTTCTTCTCATATTTATTAAATAATGTTAAAGAATATTTTTAGTCCACCTTATAGTTGGGAGTTGGGACTATATTTAGCCACATTAATATGTTTACTCTTGTCTTATGCTTTCTAGAGGTCTTTTAATCCAATTTGACATATGTATATGCCACTACGAAATATAGAAACTTCTAGTAAGGATTCATATACCATACTCCATGTCCCCAACTAGCTTAGGATTAAGGTGTAGTAATAGTAGTAGTTGTATAGTAATTCATTTGCTCCAATTACGTGACACTCTTTCCATTTGGGGCATTTCAAATTATTCGATGGAGTTCACTGCTAAATATTATTCTCTATGTTATTCTTAAAGTTGCAAGAATTCCAAACTCATTAACTATTTAGCTTTTCAACTCTGATATGATGCTTTCTCTATGAAACTCTCTTTTTGGTTATTACTTCAATATTTTCCTCCACTCTCATTAATATAGTACTGGCCAAATGTGCTCTCAGGTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGG-AGGTATAGTTACTGTTAGAATTATTCATTTTTTCATTTTCCATACGTGTCTATGTAAGACAAGATTGATATAAAACTTGCTAGATTGTGTCCCATACAAATACCCCACCCCACGTGAAATAATTCATTTTCACATCATCTGACTATGTACATAAGATATTGATACCTTTAATTTGTGAAACAGTTTCTGACTCGCACAGTTT-GGTGGGCAATTCCTACCATATGGCTTCCAGTT-GTGTGCTATAGCATC-TCTGTTTCTAT</genome_strand>
        <mrna_strand>GCACGAGAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGC-AAAAAAAATCTGCATTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAAG.....................................................................................................................................................................................TTTCTGACTCGCACAGTTTGGGTGGGCAATTCCTACCATATGGCTTCCAGNTGGTGTGCTATAGCATCTTCTGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>82</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1663" PGL_stop="2910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1663" e_stop="2043"/>
            <exon e_start="2107" e_stop="2142"/>
            <exon e_start="2727" e_stop="2776"/>
            <exon e_start="2898" e_stop="2910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.444"/>
          <exon-intron don_prob="0.789" acc_prob="0.558" e_score="0.420"/>
          <exon-only e_score="0.385"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1663" e_stop="2043" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="2044" i_stop="2106" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.444">
            <gDNA_exon_boundary e_start="2107" e_stop="2142" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="2143" i_stop="2726" i_length="584"/>
          </intron>
          <exon e_serial="3" e_score="0.420">
            <gDNA_exon_boundary e_start="2727" e_stop="2776" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.558">
            <gDNA_intron_boundary i_start="2777" i_stop="2897" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="0.385">
            <gDNA_exon_boundary e_start="2898" e_stop="2910" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="2043"/>
              <exon start="2107" stop="2142"/>
              <exon start="2727" stop="2776"/>
              <exon start="2898" stop="2910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCACA : GAAGTCAAATGAAATAACTGAACCATGAAGGATTCT : ATGCAGGTGGTTTGGTGATCACAATCCTCCATGATGGAGCTATGAAGGCG : AAATTGCACCACC</gDNA_template>
            <first_frame> L  M  S  F  R  Q  L  A  P  S  R  L  *  L  H  H  N  L  L  L  R  F  L  N  G  *  L  H  G  K  R  I  Q  *  N  E  T  N  T  E  R  F  M  T  W  C  W  E  N  M  Q  L  F  L  T  A  Y  *  P  F  N  S  V  S  Q  I  V  *  C  I  C  Y  F  P  M  K  L  *  P  T  S  Y  C  F  F  I  S  L  L  I  Y  L  *  R  F  F  F  V  H  Y  V  T  S  N  V  I  K  S  *  F  I  E  T  E  *  S  *  S  *  I  L  *  C  T  Y  F  T  :  E  V  K  *  N  N  *  T  M  K  D  S  :  M  Q  V  V  W  *  S  Q  S  S  M  M  E  L  *  R  R :   N  C  T  T </first_frame>
            <second_frame>  L  C  L  L  G  S  *  R  R  A  D  Y  D  S  T  I  I  F  S  C  V  F  *  T  A  N  Y  M  V  R  E  Y  N  R  M  K  Q  I  L  R  G  L  *  H  G  A  G  K  I  C  S  F  S  S  Q  H  I  S  H  L  I  L  Y  L  R  L  F  N  V  F  V  I  F  P  *  S  C  N  L  Q  V  T  V  F  L  F  H  Y  S  Y  T  C  R  D  S  S  L  C  T  M  *  H  Q  M  *  *  N  P  D  S  S  K  L  N  D  H  E  V  E  Y  C  S  A  P  I  S  Q :   K  S  N  E  I  T  E  P  *  R  I  L :   C  R  W  F  G  D  H  N  P  P  *  W  S  Y  E  G   : E  I  A  P   </second_frame>
            <third_frame>   Y  V  F  *  A  V  S  A  E  Q  T  M  T  P  P  *  S  S  L  A  F  F  E  R  L  I  T  W  *  E  N  T  I  E  *  N  K  Y  *  E  V  Y  D  M  V  L  G  K  Y  A  A  F  P  H  S  I  L  A  I  *  F  C  I  S  D  C  L  M  Y  L  L  F  S  H  E  V  V  T  Y  K  L  L  F  F  Y  F  I  T  H  I  L  V  E  I  L  L  C  A  L  C  N  I  K  C  N  K  I  L  I  H  R  N  *  M  I  M  K  L  N  I  V  V  H  L  F  H   : R  S  Q  M  K  *  L  N  H  E  G  F   : Y  A  G  G  L  V  I  T  I  L  H  D  G  A  M  K  A  :  K  L  H  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0027B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3278" PGL_stop="2586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3278" e_stop="2586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="3278" e_stop="2586" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3278" stop="2586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</gDNA_template>
            <first_frame> *  Q  E  K  S  F  T  S  N  I  K  S  C  T  N  K  V  S  C  *  T  N  K  T  *  R  Y  S  H  N  L  G  S  L  N  Q  V  I  S  *  E  V  L  *  A  *  F  M  V  I  R  P  K  A  V  G  F  L  S  *  M  Q  *  L  W  *  K  L  D  F  S  F  V  L  L  T  Y  K  V  T  V  T  Q  K  A  H  L  V  T  Y  R  V  F  N  L  *  S  K  T  V  Y  S  T  L  T  L  L  V  L  I  T  R  I  S  L  L  S  C  M  V  S  H  *  V  V  Q  F  L  H  S  Y  V  *  G  K  R  M  Y  G  M  V  *  C  *  V  D  R  C  L  E  C  Q  R  N  T  D  L  F  G  H  W  R  S  Y  Y  R  W  P  P  S  *  L  H  H  G  G  L  *  S  P  N  H  L  H  L  Y  H  T  K  R  S  G  R  E  R  L  S  Q  K  V  Q  I  A  W  L  P  R  S  H  Q  L  P  L  H  *  S  F  *  K  S  V  S  I  Y  R  G  T  L  M  N  Y </first_frame>
            <second_frame>  D  K  R  R  V  L  Q  A  T  *  N  H  A  Q  T  K  F  H  V  K  Q  T  K  H  E  D  I  H  T  I  L  A  A  *  I  K  *  S  V  K  R  S  C  R  H  D  S  W  L  Y  V  R  K  Q  L  A  F  *  A  K  C  S  S  Y  G  E  S  W  I  F  R  L  F  S  *  P  T  R  S  R  L  L  R  R  L  T  W  L  H  T  V  Y  S  T  F  S  P  R  L  Y  T  V  L  *  L  C  S  C  *  S  P  E  S  P  C  F  P  V  W  *  V  I  R  W  C  N  F  Y  T  H  M  S  K  A  K  E  C  M  E  W  S  D  V  K  W  T  D  V  W  S  V  K  E  I  Q  T  C  L  A  T  G  E  A  T  T  V  G  R  L  H  S  S  I  M  E  D  C  D  H  Q  T  T  C  I  Y  I  I  Q  R  G  V  E  E  K  D  Y  L  K  K  S  K  S  P  G  F  R  E  A  T  S  C  H  C  T  R  A  S  E  S  L  *  V  Y  T  E  E  L  S  *  T   </second_frame>
            <third_frame>   T  R  E  E  F  Y  K  Q  H  K  I  M  H  K  Q  S  F  M  L  N  K  Q  N  M  K  I  F  T  Q  S  W  Q  P  E  S  S  N  Q  L  R  G  L  V  G  M  I  H  G  Y  T  S  E  S  S  W  L  F  E  L  N  A  V  A  M  V  K  A  G  F  F  V  C  S  L  D  L  Q  G  H  G  Y  S  E  G  S  P  G  Y  I  P  C  I  Q  P  L  V  Q  D  C  I  Q  Y  F  D  S  A  R  A  D  H  P  N  L  P  A  F  L  Y  G  E  S  L  G  G  A  I  S  T  L  I  C  L  R  Q  K  N  V  W  N  G  L  M  L  S  G  P  M  F  G  V  S  K  K  Y  R  P  V  W  P  L  E  K  L  L  P  L  A  A  F  I  A  P  S  W  R  I  V  I  T  K  P  P  A  S  I  S  Y  K  E  E  W  K  R  K  I  I  S  K  S  P  N  R  L  A  S  E  K  P  P  A  A  T  A  L  E  L  L  K  V  C  E  Y  I  Q  R  N  S  H  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3276" stop="2587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TREEFYKQHKIMHKQSFMLNKQNMKIFTQSWQPESSNQLRGLVGMIHGYTSESSWLFELNAVAMVKAGFFVCSLDLQGHGYSEGSPGYIPCIQPLVQDCIQYFDSARADHPNLPAFLYGESLGGAISTLICLRQKNVWNGLMLSGPMFGVSKKYRPVWPLEKLLPLAAFIAPSWRIVITKPPASISYKEEWKRKIISKSPNRLASEKPPAATALELLKVCEYIQRNSHEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="2938" PGL_stop="3483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2938" e_stop="3483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2938" e_stop="3483" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2938" stop="3483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTGTTTGTGTTTTGTGTTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAGTACTGATAGGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</gDNA_template>
            <first_frame> E  I  R  V  I  S  T  S  R  V  K  V  L  Y  T  V  L  D  *  R  L  N  T  R  Y  V  T  R  *  A  F  *  V  T  V  T  L  *  V  K  R  T  N  E  K  S  S  F  H  H  S  Y  C  I  *  L  K  K  P  T  A  F  G  R  I  T  M  N  H  A  Y  K  T  S  *  L  I  T  *  F  R  L  P  R  L  C  E  Y  L  H  V  L  F  V  *  H  E  T  L  F  V  H  D  F  M  L  L  V  K  L  F  S  C  Q  V  T  I  R  A  V  L  I  R  L  E  N  W  V  R  H  C  N  D  *  V  C  L  F  V  F  C  V  C  V  C  V  C  *  Y  I  H  T  N  V  H  Y  D  I  S  M  L  F  K  S  T  D  R  V  G  S  L  A  S  Q  L  F  H  A  G  V  I  N </first_frame>
            <second_frame>  R  F  G  *  S  A  R  A  E  S  K  Y  C  I  Q  S  W  T  K  G  *  I  H  G  M  *  P  G  E  P  S  E  *  P  *  P  C  R  S  R  E  Q  T  K  N  P  A  F  T  I  A  T  A  F  S  S  K  S  Q  L  L  S  D  V  *  P  *  I  M  P  T  R  P  L  N  *  L  L  D  S  G  C  Q  D  C  V  N  I  F  M  F  C  L  F  N  M  K  L  C  L  C  M  I  L  C  C  L  *  N  S  S  L  V  K  L  P  *  G  L  F  S  L  D  W  K  I  G  *  D  I  V  M  T  E  F  V  C  L  C  F  V  F  V  F  V  F  V  D  I  Y  T  Q  M  C  I  M  I  Y  L  C  C  S  R  V  L  I  G  L  G  V  *  P  P  N  C  F  M  L  G  *  *   </second_frame>
            <third_frame>   D  S  G  D  Q  H  E  Q  S  Q  S  T  V  Y  S  L  G  L  K  V  E  Y  T  V  C  N  Q  V  S  L  L  S  N  R  D  L  V  G  Q  E  N  K  R  K  I  Q  L  S  P  *  L  L  H  L  A  Q  K  A  N  C  F  R  T  Y  N  H  E  S  C  L  Q  D  L  L  T  D  Y  L  I  Q  A  A  K  I  V  *  I  S  S  C  F  V  C  L  T  *  N  F  V  C  A  *  F  Y  V  A  C  K  T  L  L  L  S  S  Y  H  K  G  C  S  H  *  I  G  K  L  G  E  T  L  *  *  L  S  L  S  V  C  V  L  C  L  C  L  C  L  L  I  Y  T  H  K  C  A  L  *  Y  I  Y  V  V  Q  E  Y  *  *  G  W  E  F  S  L  P  T  V  S  C  W  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0027B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14015" PGL_stop="7379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14015" e_stop="11757"/>
            <exon e_start="9914" e_stop="9788"/>
            <exon e_start="9408" e_stop="9307"/>
            <exon e_start="8876" e_stop="8798"/>
            <exon e_start="7759" e_stop="7379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.784" e_score="0.999"/>
          <exon-intron don_prob="0.924" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="14015" e_stop="11757" e_length="2259"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.784">
            <gDNA_intron_boundary i_start="11756" i_stop="9915" i_length="1842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9914" e_stop="9788" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.989">
            <gDNA_intron_boundary i_start="9787" i_stop="9409" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9408" e_stop="9307" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9306" i_stop="8877" i_length="430"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8876" e_stop="8798" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.957">
            <gDNA_intron_boundary i_start="8797" i_stop="7760" i_length="1038"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="7759" e_stop="7379" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14015" stop="11757"/>
              <exon start="9914" stop="9788"/>
              <exon start="9408" stop="9307"/>
              <exon start="8876" stop="8798"/>
              <exon start="7759" stop="7401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8876" stop="8798"/>
              <exon start="7759" stop="7379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATGAGAATTTGGGTGATGAGATTTTGGAGGATTTTGAAACATACTGGGAAGATGTTAATGACCGCTTAATGGTATCAAGGATGGTAAGTGACTCAGTGATTAAGGGGATAGTGAGTGCGGTGGAACAAGAGGCAGCTGAGAGACTAGTGACTAAGGATATGGAATTAGCCAACTTGAAGGAATATTTGCAATTTCATGAAGGGGGTCTTAGCAAAACTGAACTTGAATCTTTTGGGTCACTTATGTCGCAGAATGAGCTAGAAAGCATGGATTTTCGAAAATGTATGACTTTATCAGATGTTTTTATGGAGCATGGTAAGATGGGAGAGTTTCTAGATGGGCTAAGAAGTTTGGCGAAAGATGAATTCAAGAAGTTGAAGAAGAGTATTGATGAGCTCAGAGGATCCAATTCTGTTAGTAACAAGATCTCTCGCTCTGAGATGGCGAAACTAGAAGGTATTCTACAGGAGAAAGAATCTGGAATTTGGGTTCAGTTGGACAAAACACTAGACAACATAAGAATGATGGTGGACACCGTCTTTAAACGTATGGATGTTATGCTACAGTTGTCCAAGACATCACTTCATCACTGGCAGGAGGAACATCTAATCAAAGTGGAGCTTGAGTCCATGGTAATGCGGTGTGTAATTCGGACCGTGCAAGAAGAATTTGAGTACAAACTGTGGGACCAGTATGCTCAATTATGTGGTGACCGAAATGAGAAGTTGAATGCCATCTCTAGTTTACGGACGGAGTTGGATGCTGTTTTGAAGTCATTGTCAAGTTCAGAAAATGGGCATGTGACTTCCCATGGATCGCATGATGCAGATTTCTTTACACGCAAGAAATCAAGTGAGTACGTGACTTCTACAAAATCAGTTTGGGATGGAAATGGAAAGCTGGAGGATTCTAAGACTGATATACCTGAGAATTTTGATGCTGTCACGTTGAAGCACATGTCAAAAGATGAAATGGTGACCTATTTTAATAATATAATGACAAAGATGAAGAGACACCATGAGTCCATTCTGCAAAAGAAAACCGATGAATATTTTGTTCTAAGGGCAGAGTATTTAAATCTTAGAGGAGGCTCTGTTGTGCCTCATAAAAAGGATAAGGGTGAATCTGACATTCTAAGGAAGAAGATTCCAGAAATTATATTCAAATTGGATGATATTCTGGTAGAGAATGAAAAACATCCTGCATTTACCCAGGAGACTCTAAGTTTCGGTAACTTAAAGGATAGGCTTGATAACCTTCTTTCTGAAAATCACCAGCTTAGAGACTTGGTTAAAGAAAAGAAAAATGAAGTTAAGTCCCTTTTGTCCCAAGTTTCAGATGCCACTGAGAAGAGGCTGCAACATTCTTTGGCAGAAGCAGGCATGCTAAAACAGATAGGAGAACTCAATTTAGCCATGGAAGAGTCACTGATAGGAGGTTCTGTAAGGGAAGACGTGTATACCTGTTTTCTAAGAGATCTCAGTGGCGGGGCAAGAAATGAAGTTGAGGAGTTAAACTTGGGATTTAATATGATTAATGAAAGTAATGATACTAGTGCTGGAAGTACCAGAAAAATTGAAATTGAAGATTTAGAGATGGAGTGCCTGATTATGCAAGAAATTTGTGGAGTGATTTCCGGTGAAGGCATTAAGGAGGCTAAAGATATGCTTAAGGAACTGTATTTGGAGCATTTGAATGAAAAAGAAATTCGAACTTCTCTTGATACAAAACTTATTGAGATGGAAAACAAATTAAAATTCGAGGTTGAAGAGAAGGACAGACTGATGCAGATGGAAAAGTTAGTGAACGAGAAGGAGAAGTTAGCAACAGATGCATCAGCTGCTCTAGCAAAAGAGAGGGTTCAGTCTGAGCAGGTTCGTCAAGAGTTGAATGCTGCGAAAGAATTTGCAAGTCAACAACAAACATTAGCTTCTGGGTGCAACAAAGAAGTAAATGTAATAAAGGGCCAGTTGGCAGAAGCAGTGGAGCGAATTGAAGTACTGAAAGAGGAGGTAGCCCAATTAAATATAAGTCTTGAGGAGAAGACTGAGGAGTTAAAAGAAGCTAATCACAGGGCAAATATGGTCCTTGCTATTTCTGAAGAGAGGCAAACTCTTTTGTCCTCTCTTGAATCAAAAGAAATAGCGCTAAGAAAGCAGGTGGAAAAAATAATTGGTAATATAAATGAATCGTCAAAAATGATTGCTGATTTTGAATGCAGGGTGACAGGAAGGTTGAAAACAAATAATGCAAG : GTTTGAGCACTCGTTTTCTCAAATGGATTGTCTTGTTAAGAAGGCCAATTTGCTGAGAAGAACAACACTACTGTATCAACAAAGGCTTGAAAAACGATGTTCAGACCTTAAATTGGCTGAGGCTGAG : GTTGATCTTTTGGGAGATGAGGTGGATACACTTCTAAGCCTAGTTGAGAAGATTTACATAGCGCTTGATCATTACTCGCCAGTTTTACAGCATTATCCTGGG : ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAG : ATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCGGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAGTTATGGAAATCCATGTGTTTATCATTTTTCTTTTATTGAATAATTCAATTCTGGAA</gDNA_template>
            <first_frame> G  K  *  E  F  G  *  *  D  F  G  G  F  *  N  I  L  G  R  C  *  *  P  L  N  G  I  K  D  G  K  *  L  S  D  *  G  D  S  E  C  G  G  T  R  G  S  *  E  T  S  D  *  G  Y  G  I  S  Q  L  E  G  I  F  A  I  S  *  R  G  S  *  Q  N  *  T  *  I  F  W  V  T  Y  V  A  E  *  A  R  K  H  G  F  S  K  M  Y  D  F  I  R  C  F  Y  G  A  W  *  D  G  R  V  S  R  W  A  K  K  F  G  E  R  *  I  Q  E  V  E  E  E  Y  *  *  A  Q  R  I  Q  F  C  *  *  Q  D  L  S  L  *  D  G  E  T  R  R  Y  S  T  G  E  R  I  W  N  L  G  S  V  G  Q  N  T  R  Q  H  K  N  D  G  G  H  R  L  *  T  Y  G  C  Y  A  T  V  V  Q  D  I  T  S  S  L  A  G  G  T  S  N  Q  S  G  A  *  V  H  G  N  A  V  C  N  S  D  R  A  R  R  I  *  V  Q  T  V  G  P  V  C  S  I  M  W  *  P  K  *  E  V  E  C  H  L  *  F  T  D  G  V  G  C  C  F  E  V  I  V  K  F  R  K  W  A  C  D  F  P  W  I  A  *  C  R  F  L  Y  T  Q  E  I  K  *  V  R  D  F  Y  K  I  S  L  G  W  K  W  K  A  G  G  F  *  D  *  Y  T  *  E  F  *  C  C  H  V  E  A  H  V  K  R  *  N  G  D  L  F  *  *  Y  N  D  K  D  E  E  T  P  *  V  H  S  A  K  E  N  R  *  I  F  C  S  K  G  R  V  F  K  S  *  R  R  L  C  C  A  S  *  K  G  *  G  *  I  *  H  S  K  E  E  D  S  R  N  Y  I  Q  I  G  *  Y  S  G  R  E  *  K  T  S  C  I  Y  P  G  D  S  K  F  R  *  L  K  G  *  A  *  *  P  S  F  *  K  S  P  A  *  R  L  G  *  R  K  E  K  *  S  *  V  P  F  V  P  S  F  R  C  H  *  E  E  A  A  T  F  F  G  R  S  R  H  A  K  T  D  R  R  T  Q  F  S  H  G  R  V  T  D  R  R  F  C  K  G  R  R  V  Y  L  F  S  K  R  S  Q  W  R  G  K  K  *  S  *  G  V  K  L  G  I  *  Y  D  *  *  K  *  *  Y  *  C  W  K  Y  Q  K  N  *  N  *  R  F  R  D  G  V  P  D  Y  A  R  N  L  W  S  D  F  R  *  R  H  *  G  G  *  R  Y  A  *  G  T  V  F  G  A  F  E  *  K  R  N  S  N  F  S  *  Y  K  T  Y  *  D  G  K  Q  I  K  I  R  G  *  R  E  G  Q  T  D  A  D  G  K  V  S  E  R  E  G  E  V  S  N  R  C  I  S  C  S  S  K  R  E  G  S  V  *  A  G  S  S  R  V  E  C  C  E  R  I  C  K  S  T  T  N  I  S  F  W  V  Q  Q  R  S  K  C  N  K  G  P  V  G  R  S  S  G  A  N  *  S  T  E  R  G  G  S  P  I  K  Y  K  S  *  G  E  D  *  G  V  K  R  S  *  S  Q  G  K  Y  G  P  C  Y  F  *  R  E  A  N  S  F  V  L  S  *  I  K  R  N  S  A  K  K  A  G  G  K  N  N  W  *  Y  K  *  I  V  K  N  D  C  *  F  *  M  Q  G  D  R  K  V  E  N  K  *  C  K  :  V  *  A  L  V  F  S  N  G  L  S  C  *  E  G  Q  F  A  E  K  N  N  T  T  V  S  T  K  A  *  K  T  M  F  R  P  *  I  G  *  G  *   : G  *  S  F  G  R  *  G  G  Y  T  S  K  P  S  *  E  D  L  H  S  A  *  S  L  L  A  S  F  T  A  L  S  W   : D  Y  G  D  S  *  A  D  Q  K  G  I  N  W  R  V  Y  Q  A  S  K  I  I  S  C  L  R :   *  R  V  *  F  P  V  F  F  H  S  N  P  A  G  P  S  L  K  F  N  T  M  L  E  K  Q  I  L  V  Q  R  D  R  R  H  V  V  C  S  N  L  K  *  H  K  V  L  E  V  S  T  D  L  S  C  R  G  *  D  P  S  *  F  C  I  L  C  I  I  I  G  Q  E  N  P  H  I  L  V  A  A  V  K  F  *  V  H  F  V  S  F  L  V  Y  R  E  S  K  C  T  A  Y  F  R  L  V  *  L  W  K  S  M  C  L  S  F  F  F  Y  *  I  I  Q  F  W   </first_frame>
            <second_frame>  E  N  E  N  L  G  D  E  I  L  E  D  F  E  T  Y  W  E  D  V  N  D  R  L  M  V  S  R  M  V  S  D  S  V  I  K  G  I  V  S  A  V  E  Q  E  A  A  E  R  L  V  T  K  D  M  E  L  A  N  L  K  E  Y  L  Q  F  H  E  G  G  L  S  K  T  E  L  E  S  F  G  S  L  M  S  Q  N  E  L  E  S  M  D  F  R  K  C  M  T  L  S  D  V  F  M  E  H  G  K  M  G  E  F  L  D  G  L  R  S  L  A  K  D  E  F  K  K  L  K  K  S  I  D  E  L  R  G  S  N  S  V  S  N  K  I  S  R  S  E  M  A  K  L  E  G  I  L  Q  E  K  E  S  G  I  W  V  Q  L  D  K  T  L  D  N  I  R  M  M  V  D  T  V  F  K  R  M  D  V  M  L  Q  L  S  K  T  S  L  H  H  W  Q  E  E  H  L  I  K  V  E  L  E  S  M  V  M  R  C  V  I  R  T  V  Q  E  E  F  E  Y  K  L  W  D  Q  Y  A  Q  L  C  G  D  R  N  E  K  L  N  A  I  S  S  L  R  T  E  L  D  A  V  L  K  S  L  S  S  S  E  N  G  H  V  T  S  H  G  S  H  D  A  D  F  F  T  R  K  K  S  S  E  Y  V  T  S  T  K  S  V  W  D  G  N  G  K  L  E  D  S  K  T  D  I  P  E  N  F  D  A  V  T  L  K  H  M  S  K  D  E  M  V  T  Y  F  N  N  I  M  T  K  M  K  R  H  H  E  S  I  L  Q  K  K  T  D  E  Y  F  V  L  R  A  E  Y  L  N  L  R  G  G  S  V  V  P  H  K  K  D  K  G  E  S  D  I  L  R  K  K  I  P  E  I  I  F  K  L  D  D  I  L  V  E  N  E  K  H  P  A  F  T  Q  E  T  L  S  F  G  N  L  K  D  R  L  D  N  L  L  S  E  N  H  Q  L  R  D  L  V  K  E  K  K  N  E  V  K  S  L  L  S  Q  V  S  D  A  T  E  K  R  L  Q  H  S  L  A  E  A  G  M  L  K  Q  I  G  E  L  N  L  A  M  E  E  S  L  I  G  G  S  V  R  E  D  V  Y  T  C  F  L  R  D  L  S  G  G  A  R  N  E  V  E  E  L  N  L  G  F  N  M  I  N  E  S  N  D  T  S  A  G  S  T  R  K  I  E  I  E  D  L  E  M  E  C  L  I  M  Q  E  I  C  G  V  I  S  G  E  G  I  K  E  A  K  D  M  L  K  E  L  Y  L  E  H  L  N  E  K  E  I  R  T  S  L  D  T  K  L  I  E  M  E  N  K  L  K  F  E  V  E  E  K  D  R  L  M  Q  M  E  K  L  V  N  E  K  E  K  L  A  T  D  A  S  A  A  L  A  K  E  R  V  Q  S  E  Q  V  R  Q  E  L  N  A  A  K  E  F  A  S  Q  Q  Q  T  L  A  S  G  C  N  K  E  V  N  V  I  K  G  Q  L  A  E  A  V  E  R  I  E  V  L  K  E  E  V  A  Q  L  N  I  S  L  E  E  K  T  E  E  L  K  E  A  N  H  R  A  N  M  V  L  A  I  S  E  E  R  Q  T  L  L  S  S  L  E  S  K  E  I  A  L  R  K  Q  V  E  K  I  I  G  N  I  N  E  S  S  K  M  I  A  D  F  E  C  R  V  T  G  R  L  K  T  N  N  A  R :   F  E  H  S  F  S  Q  M  D  C  L  V  K  K  A  N  L  L  R  R  T  T  L  L  Y  Q  Q  R  L  E  K  R  C  S  D  L  K  L  A  E  A  E  :  V  D  L  L  G  D  E  V  D  T  L  L  S  L  V  E  K  I  Y  I  A  L  D  H  Y  S  P  V  L  Q  H  Y  P  G  :  I  M  E  I  L  K  L  I  K  R  E  L  T  G  E  S  T  K  L  V  K  S  S  P  A  *   : D  K  E  S  N  S  R  C  F  F  I  P  I  L  L  V  L  V  *  S  S  T  R  C  *  K  N  R  F  *  F  S  G  T  D  D  M  *  F  V  A  T  *  N  S  T  K  F  L  K  F  Q  L  T  C  L  V  E  G  E  I  L  V  S  S  V  Y  C  V  S  S  S  D  R  K  I  P  T  S  *  L  Q  L  *  N  F  R  Y  I  L  S  A  F  L  Y  I  E  N  Q  N  V  Q  P  T  L  G  *  F  S  Y  G  N  P  C  V  Y  H  F  S  F  I  E  *  F  N  S  G  </second_frame>
            <third_frame>   K  M  R  I  W  V  M  R  F  W  R  I  L  K  H  T  G  K  M  L  M  T  A  *  W  Y  Q  G  W  *  V  T  Q  *  L  R  G  *  *  V  R  W  N  K  R  Q  L  R  D  *  *  L  R  I  W  N  *  P  T  *  R  N  I  C  N  F  M  K  G  V  L  A  K  L  N  L  N  L  L  G  H  L  C  R  R  M  S  *  K  A  W  I  F  E  N  V  *  L  Y  Q  M  F  L  W  S  M  V  R  W  E  S  F  *  M  G  *  E  V  W  R  K  M  N  S  R  S  *  R  R  V  L  M  S  S  E  D  P  I  L  L  V  T  R  S  L  A  L  R  W  R  N  *  K  V  F  Y  R  R  K  N  L  E  F  G  F  S  W  T  K  H  *  T  T  *  E  *  W  W  T  P  S  L  N  V  W  M  L  C  Y  S  C  P  R  H  H  F  I  T  G  R  R  N  I  *  S  K  W  S  L  S  P  W  *  C  G  V  *  F  G  P  C  K  K  N  L  S  T  N  C  G  T  S  M  L  N  Y  V  V  T  E  M  R  S  *  M  P  S  L  V  Y  G  R  S  W  M  L  F  *  S  H  C  Q  V  Q  K  M  G  M  *  L  P  M  D  R  M  M  Q  I  S  L  H  A  R  N  Q  V  S  T  *  L  L  Q  N  Q  F  G  M  E  M  E  S  W  R  I  L  R  L  I  Y  L  R  I  L  M  L  S  R  *  S  T  C  Q  K  M  K  W  *  P  I  L  I  I  *  *  Q  R  *  R  D  T  M  S  P  F  C  K  R  K  P  M  N  I  L  F  *  G  Q  S  I  *  I  L  E  E  A  L  L  C  L  I  K  R  I  R  V  N  L  T  F  *  G  R  R  F  Q  K  L  Y  S  N  W  M  I  F  W  *  R  M  K  N  I  L  H  L  P  R  R  L  *  V  S  V  T  *  R  I  G  L  I  T  F  F  L  K  I  T  S  L  E  T  W  L  K  K  R  K  M  K  L  S  P  F  C  P  K  F  Q  M  P  L  R  R  G  C  N  I  L  W  Q  K  Q  A  C  *  N  R  *  E  N  S  I  *  P  W  K  S  H  *  *  E  V  L  *  G  K  T  C  I  P  V  F  *  E  I  S  V  A  G  Q  E  M  K  L  R  S  *  T  W  D  L  I  *  L  M  K  V  M  I  L  V  L  E  V  P  E  K  L  K  L  K  I  *  R  W  S  A  *  L  C  K  K  F  V  E  *  F  P  V  K  A  L  R  R  L  K  I  C  L  R  N  C  I  W  S  I  *  M  K  K  K  F  E  L  L  L  I  Q  N  L  L  R  W  K  T  N  *  N  S  R  L  K  R  R  T  D  *  C  R  W  K  S  *  *  T  R  R  R  S  *  Q  Q  M  H  Q  L  L  *  Q  K  R  G  F  S  L  S  R  F  V  K  S  *  M  L  R  K  N  L  Q  V  N  N  K  H  *  L  L  G  A  T  K  K  *  M  *  *  R  A  S  W  Q  K  Q  W  S  E  L  K  Y  *  K  R  R  *  P  N  *  I  *  V  L  R  R  R  L  R  S  *  K  K  L  I  T  G  Q  I  W  S  L  L  F  L  K  R  G  K  L  F  C  P  L  L  N  Q  K  K  *  R  *  E  S  R  W  K  K  *  L  V  I  *  M  N  R  Q  K  *  L  L  I  L  N  A  G  *  Q  E  G  *  K  Q  I  M  Q   : G  L  S  T  R  F  L  K  W  I  V  L  L  R  R  P  I  C  *  E  E  Q  H  Y  C  I  N  K  G  L  K  N  D  V  Q  T  L  N  W  L  R  L  R :   L  I  F  W  E  M  R  W  I  H  F  *  A  *  L  R  R  F  T  *  R  L  I  I  T  R  Q  F  Y  S  I  I  L  G :   L  W  R  F  L  S  *  S  K  G  N  *  L  E  S  L  P  S  *  *  N  H  L  L  L  K  :  I  K  S  L  I  P  G  V  F  S  F  Q  S  C  W  S  *  F  E  V  Q  H  D  A  R  K  T  D  F  S  S  A  G  Q  T  T  C  S  L  *  Q  L  E  I  A  Q  S  S  *  S  F  N  *  P  V  L  *  R  V  R  S  *  L  V  L  Y  I  V  Y  H  H  R  T  G  K  S  P  H  L  S  C  S  C  E  I  L  G  T  F  C  Q  L  S  C  I  *  R  I  K  M  Y  S  L  L  *  A  S  L  V  M  E  I  H  V  F  I  I  F  L  L  L  N  N  S  I  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14014" stop="11757"/>
                    <exon start="9914" stop="9788"/>
                    <exon start="9408" stop="9307"/>
                    <exon start="8876" stop="8799"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2562</number_coding_nucleotides>
                  <number_encoded_amino_acids>854</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENENLGDEILEDFETYWEDVNDRLMVSRMVSDSVIKGIVSAVEQEAAERLVTKDMELANLKEYLQFHEGGLSKTELESFGSLMSQNELESMDFRKCMTLSDVFMEHGKMGEFLDGLRSLAKDEFKKLKKSIDELRGSNSVSNKISRSEMAKLEGILQEKESGIWVQLDKTLDNIRMMVDTVFKRMDVMLQLSKTSLHHWQEEHLIKVELESMVMRCVIRTVQEEFEYKLWDQYAQLCGDRNEKLNAISSLRTELDAVLKSLSSSENGHVTSHGSHDADFFTRKKSSEYVTSTKSVWDGNGKLEDSKTDIPENFDAVTLKHMSKDEMVTYFNNIMTKMKRHHESILQKKTDEYFVLRAEYLNLRGGSVVPHKKDKGESDILRKKIPEIIFKLDDILVENEKHPAFTQETLSFGNLKDRLDNLLSENHQLRDLVKEKKNEVKSLLSQVSDATEKRLQHSLAEAGMLKQIGELNLAMEESLIGGSVREDVYTCFLRDLSGGARNEVEELNLGFNMINESNDTSAGSTRKIEIEDLEMECLIMQEICGVISGEGIKEAKDMLKELYLEHLNEKEIRTSLDTKLIEMENKLKFEVEEKDRLMQMEKLVNEKEKLATDASAALAKERVQSEQVRQELNAAKEFASQQQTLASGCNKEVNVIKGQLAEAVERIEVLKEEVAQLNISLEEKTEELKEANHRANMVLAISEERQTLLSSLESKEIALRKQVEKIIGNINESSKMIADFECRVTGRLKTNNARFEHSFSQMDCLVKKANLLRRTTLLYQQRLEKRCSDLKLAEAEVDLLGDEVDTLLSLVEKIYIALDHYSPVLQHYPGIMEILKLIKRELTGESTKLVKSSPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23963" PGL_stop="33220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23963" e_stop="24279"/>
            <exon e_start="25530" e_stop="25606"/>
            <exon e_start="26760" e_stop="26870"/>
            <exon e_start="27759" e_stop="27827"/>
            <exon e_start="28729" e_stop="28785"/>
            <exon e_start="29371" e_stop="29409"/>
            <exon e_start="29562" e_stop="29666"/>
            <exon e_start="29785" e_stop="29867"/>
            <exon e_start="29968" e_stop="30049"/>
            <exon e_start="30421" e_stop="30564"/>
            <exon e_start="30656" e_stop="30730"/>
            <exon e_start="30833" e_stop="31299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.139" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.335" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23963" e_stop="24279" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.139">
            <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25530" e_stop="25606" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26760" e_stop="26870" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27759" e_stop="27827" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28729" e_stop="28785" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.013" acc_prob="0.881">
            <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29409" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.927">
            <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29562" e_stop="29666" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.335">
            <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29785" e_stop="29867" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.903" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29868" i_stop="29967" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29968" e_stop="30049" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30050" i_stop="30420" i_length="371"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30421" e_stop="30564" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30656" e_stop="30730" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="30833" e_stop="31299" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23963" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23985" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23996" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23999" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24020" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24087" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28731" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29666"/>
              <exon start="29785" stop="29867"/>
              <exon start="29968" stop="30049"/>
              <exon start="30421" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="30893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30539" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG : AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG : GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG : GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG : GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG : GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG : GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG : ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAA : GAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAG : ATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG : GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG : AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATCA</gDNA_template>
            <first_frame> H  F  L  *  P  *  A  A  I  G  L  C  N  C  Y  F  C  S  L  C  V  S  L  *  V  F  I  D  N  L  W  N  F  G  S  V  S  T  D  C  N  G  R  *  G  E  F  N  S  *  *  R  V  D  S  E  A  E  A  Q  G  K  T  *  Q  T  K  A  M  G  *  *  K  H  *  S  L  E  D  *  E  V  *  S  F  L  E  P  E  W  I  A  *  S  Q  F  V  F  N  S  I  P  S  V  Q  R :   E  I  F  A  R  V  L  A  Y  C  K  R  C  V  E  R  A  W  N  C  L  R  T  *  L   : G  *  R  I  Y  D  S  F  Y  Y  Y  E  D  K  G  S  L  Y  Y  C  K  S  *  G  F  D  K  T  F  V  K  K  C  S  C  T  S   : G  C  Q  N  P  E  *  *  D  A  M  *  H  N  Q  D  R  Q  H  G  S  Q  Q   : G  A  L  C  *  T  Q  T  I  S  C  G  S  Q  F  V  N  F  K   : G  P  G  N  F  D  R  L  L  Y  P  C  P   : G  K  H  S  C  C  Y  G  F  L  *  R  S  K  A  S  E  E  G  Y  R  G  L  H  I  E  Q  D  A  S  A  T  S  Y  Q   : D  P  H  A  E  E  R  A  C  K  K  S  S  S  G  *  *  E  L  G  Q  I  S  S  A  I  *  E  :  E  E  R  *  T  E  E  S  S  E  Q  R  K  E  T  I  Y  A  F  P  T  S  S  A  T  *  Q   : D  *  S  T  T  G  K  W  *  I  L  L  K  *  Q  E  E  D  G  K  A  V  G  R  E  A  S  Q  T  G  *  E  G  C  *  K  Q  E  K  T  R  R  S  F  C  S  T  R   : G  T  K  N  T  *  P  R  C  V  Q  R  G  *  R  *  C  H  C  H  G  I  V  I  E   : E  K  S  K  G  V  Q  E  A  K  I  N  *  *  D  Q  R  *  G  I  Y  C  R  S  *  Q  T  I  *  K  E  I  E  E  L  *  I  S  S  S  L  L  G  K  G  C  Y  W  P  F  V  I  M  I  A  E  E  S  L  *  K  L  L  S  C  H  C  C  I  F  H  S  A  A  I  L  M  L  K  F  *  R  T  F  P  S  M  P  S  A  R  R  S  A  S  P  C  I  W  H  F  W  K  R  G  K  H  S  F  F  P  L  *  L  *  *  W  A  K  S  I  V  L  L  L  C  V  P  Y  *  L  I  A  F  A  L  C  H  K  *  S  K  Q  T  D  Q  L  Q  Y  L  F  R  V  *  *  S </first_frame>
            <second_frame>  T  S  F  N  P  E  P  P  L  A  S  V  T  A  I  S  A  V  C  A  F  L  C  K  F  S  L  I  I  C  G  I  S  V  Q  F  R  L  T  A  M  A  D  E  E  N  L  T  V  N  E  E  L  I  P  K  P  R  H  K  G  K  H  D  K  P  K  P  W  D  D  E  S  I  D  H  W  K  I  E  K  F  D  P  S  W  N  Q  S  G  L  L  E  V  S  S  F  S  T  L  F  P  Q  Y  R   : E  K  Y  L  Q  E  C  W  P  T  V  K  G  A  L  K  E  H  G  I  A  C  E  L  N  L  :  V  E  G  S  M  T  V  S  T  T  M  K  T  R  D  P  Y  I  I  V  K  A  R  D  L  I  K  L  L  S  R  S  V  P  A  P  Q  :  A  V  K  I  L  N  D  E  M  Q  C  D  I  I  K  I  G  N  M  V  R  N  K  :  E  R  F  V  K  R  R  Q  Y  L  V  G  P  N  S  S  T  L  K  :  A  L  E  I  L  T  G  C  Y  I  L  V  Q  :  G  N  T  V  A  A  M  G  S  F  K  G  L  K  Q  A  R  R  V  I  E  D  C  I  L  N  K  M  H  P  L  H  H  I  K  :  I  L  M  L  K  R  E  L  A  K  N  P  A  L  A  S  E  N  W  D  R  F  L  P  Q  F  K  K :   K  N  V  K  Q  K  K  V  Q  S  K  E  K  K  P  Y  T  P  F  P  P  P  Q  P  P  S  K  :  I  D  Q  Q  L  E  S  G  E  Y  F  L  S  D  K  K  K  M  A  K  Q  W  E  E  K  Q  V  K  Q  A  E  K  V  A  E  N  K  K  K  R  E  E  A  F  V  P  P  E  :  E  P  K  T  H  N  Q  D  V  S  N  V  D  K  D  D  V  T  A  M  A  S  S  L  K  :  R  K  A  K  E  F  R  K  Q  K  S  I  D  K  I  N  A  E  E  F  I  A  G  P  S  K  P  S  K  K  K  S  K  S  S  R  *  V  V  V  S  W  E  K  V  A  I  G  H  L  *  L  *  L  L  K  K  V  C  K  N  C  C  L  V  T  V  V  S  S  I  Q  Q  P  Y  *  C  *  N  S  R  G  P  S  L  P  C  H  Q  H  D  D  Q  L  V  L  V  S  G  I  F  G  N  G  E  N  T  L  F  S  P  F  S  C  D  D  G  R  S  P  *  C  C  C  F  V  Y  H  T  D  *  S  R  L  L  C  V  T  S  N  L  N  R  L  I  N  Y  S  I  Y  F  V  F  N  D   </second_frame>
            <third_frame>   L  P  L  T  L  S  R  H  W  P  L  *  L  L  F  L  Q  F  V  R  F  S  V  S  F  H  *  *  F  V  E  F  R  F  S  F  D  *  L  Q  W  Q  M  R  R  I  *  Q  L  M  K  S  *  F  R  S  R  G  T  R  E  N  M  T  N  Q  S  H  G  M  M  K  A  L  I  I  G  R  L  R  S  L  I  L  P  G  T  R  V  D  C  L  K  S  V  R  F  Q  L  Y  S  L  S  T  E  :  R  N  I  C  K  S  V  G  L  L  *  K  V  R  *  K  S  M  E  L  P  A  N  L  T  W :   L  K  D  L  *  Q  F  L  L  L  *  R  Q  G  I  P  I  L  L  *  K  L  G  I  *  *  N  F  C  Q  E  V  F  L  H  L  R :   L  S  K  S  *  M  M  R  C  N  V  T  *  S  R  S  A  T  W  F  A  T  R :   S  A  L  L  N  A  D  N  I  L  W  V  P  I  R  Q  L  *  R :   P  W  K  F  *  P  A  A  I  S  L  S  R :   E  T  Q  L  L  L  W  V  P  L  K  V  *  S  K  R  G  G  L  *  R  T  A  Y  *  T  R  C  I  R  Y  I  I  S  R :   S  S  C  *  R  E  S  L  Q  K  I  Q  L  W  L  V  R  T  G  T  D  F  F  R  N  L  R   : R  R  T  L  N  R  R  K  F  R  A  K  K  R  N  H  I  R  L  S  H  L  L  S  H  L  A  R :   L  I  N  N  W  K  V  V  N  T  S  *  V  T  R  R  R  W  Q  S  S  G  K  R  S  K  S  N  R  L  R  R  L  L  K  T  R  K  N  E  K  K  L  L  F  H  P  R :   N  Q  K  H  I  T  K  M  C  P  T  W  I  K  M  M  S  L  P  W  H  R  H  *  R :   E  K  Q  R  S  S  G  S  K  N  Q  L  I  R  S  T  L  R  N  L  L  Q  V  L  A  N  H  L  K  R  N  R  R  A  L  D  K  *  *  S  L  G  K  R  L  L  L  A  I  C  D  Y  D  C  *  R  K  S  V  K  I  A  V  L  S  L  L  Y  L  P  F  S  S  H  I  D  V  K  I  L  E  D  L  P  F  H  A  I  S  T  T  I  S  *  S  L  Y  L  A  F  L  E  T  G  K  T  L  F  F  P  P  L  V  V  M  M  G  E  V  H  S  V  V  A  L  C  T  I  L  I  D  R  V  C  F  V  S  Q  V  I  *  T  D  *  S  I  T  V  F  I  S  C  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23964" stop="24279"/>
                    <exon start="25530" stop="25606"/>
                    <exon start="26760" stop="26870"/>
                    <exon start="27759" stop="27827"/>
                    <exon start="28729" stop="28785"/>
                    <exon start="29371" stop="29409"/>
                    <exon start="29562" stop="29666"/>
                    <exon start="29785" stop="29867"/>
                    <exon start="29968" stop="30049"/>
                    <exon start="30421" stop="30564"/>
                    <exon start="30656" stop="30730"/>
                    <exon start="30833" stop="30943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFNPEPPLASVTAISAVCAFLCKFSLIICGISVQFRLTAMADEENLTVNEELIPKPRHKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAGPSKPSKKKSKSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23963" e_stop="24279"/>
            <exon e_start="25530" e_stop="25606"/>
            <exon e_start="26760" e_stop="26870"/>
            <exon e_start="27759" e_stop="27827"/>
            <exon e_start="28729" e_stop="28785"/>
            <exon e_start="29371" e_stop="29409"/>
            <exon e_start="29562" e_stop="29666"/>
            <exon e_start="29785" e_stop="29867"/>
            <exon e_start="29968" e_stop="30049"/>
            <exon e_start="30421" e_stop="30564"/>
            <exon e_start="30656" e_stop="30730"/>
            <exon e_start="30833" e_stop="31298"/>
            <exon e_start="31944" e_stop="31962"/>
            <exon e_start="33210" e_stop="33220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.139" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.335" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.123" acc_prob="0.545" e_score="0.737"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23963" e_stop="24279" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.139">
            <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25530" e_stop="25606" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26760" e_stop="26870" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27759" e_stop="27827" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28729" e_stop="28785" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.013" acc_prob="0.881">
            <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29409" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.927">
            <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29562" e_stop="29666" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.335">
            <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29785" e_stop="29867" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.903" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29868" i_stop="29967" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29968" e_stop="30049" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30050" i_stop="30420" i_length="371"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30421" e_stop="30564" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30656" e_stop="30730" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="30833" e_stop="31298" e_length="466"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31299" i_stop="31943" i_length="645"/>
          </intron>
          <exon e_serial="13" e_score="0.737">
            <gDNA_exon_boundary e_start="31944" e_stop="31962" e_length="19"/>
          </exon>
          <intron i_serial="13" don_prob="0.123" acc_prob="0.545">
            <gDNA_intron_boundary i_start="31963" i_stop="33209" i_length="1247"/>
          </intron>
          <exon e_serial="14" e_score="0.727">
            <gDNA_exon_boundary e_start="33210" e_stop="33220" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23963" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23985" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23996" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23999" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24020" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24087" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28731" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29666"/>
              <exon start="29785" stop="29867"/>
              <exon start="29968" stop="30049"/>
              <exon start="30421" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="30893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30539" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30660" stop="30730"/>
              <exon start="30833" stop="31298"/>
              <exon start="31944" stop="31962"/>
              <exon start="33210" stop="33220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249329" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG : AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG : GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG : GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG : GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG : GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG : GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG : ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAA : GAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAG : ATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG : GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG : AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGTATTTATTTCGTGTTTAATGATC : TAAACAAAAAAAAAATCAT : AAAAAATACCA</gDNA_template>
            <first_frame> H  F  L  *  P  *  A  A  I  G  L  C  N  C  Y  F  C  S  L  C  V  S  L  *  V  F  I  D  N  L  W  N  F  G  S  V  S  T  D  C  N  G  R  *  G  E  F  N  S  *  *  R  V  D  S  E  A  E  A  Q  G  K  T  *  Q  T  K  A  M  G  *  *  K  H  *  S  L  E  D  *  E  V  *  S  F  L  E  P  E  W  I  A  *  S  Q  F  V  F  N  S  I  P  S  V  Q  R :   E  I  F  A  R  V  L  A  Y  C  K  R  C  V  E  R  A  W  N  C  L  R  T  *  L   : G  *  R  I  Y  D  S  F  Y  Y  Y  E  D  K  G  S  L  Y  Y  C  K  S  *  G  F  D  K  T  F  V  K  K  C  S  C  T  S   : G  C  Q  N  P  E  *  *  D  A  M  *  H  N  Q  D  R  Q  H  G  S  Q  Q   : G  A  L  C  *  T  Q  T  I  S  C  G  S  Q  F  V  N  F  K   : G  P  G  N  F  D  R  L  L  Y  P  C  P   : G  K  H  S  C  C  Y  G  F  L  *  R  S  K  A  S  E  E  G  Y  R  G  L  H  I  E  Q  D  A  S  A  T  S  Y  Q   : D  P  H  A  E  E  R  A  C  K  K  S  S  S  G  *  *  E  L  G  Q  I  S  S  A  I  *  E  :  E  E  R  *  T  E  E  S  S  E  Q  R  K  E  T  I  Y  A  F  P  T  S  S  A  T  *  Q   : D  *  S  T  T  G  K  W  *  I  L  L  K  *  Q  E  E  D  G  K  A  V  G  R  E  A  S  Q  T  G  *  E  G  C  *  K  Q  E  K  T  R  R  S  F  C  S  T  R   : G  T  K  N  T  *  P  R  C  V  Q  R  G  *  R  *  C  H  C  H  G  I  V  I  E   : E  K  S  K  G  V  Q  E  A  K  I  N  *  *  D  Q  R  *  G  I  Y  C  R  S  *  Q  T  I  *  K  E  I  E  E  L  *  I  S  S  S  L  L  G  K  G  C  Y  W  P  F  V  I  M  I  A  E  E  S  L  *  K  L  L  S  C  H  C  C  I  F  H  S  A  A  I  L  M  L  K  F  *  R  T  F  P  S  M  P  S  A  R  R  S  A  S  P  C  I  W  H  F  W  K  R  G  K  H  S  F  F  P  L  *  L  *  *  W  A  K  S  I  V  L  L  L  C  V  P  Y  *  L  I  A  F  A  L  C  H  K  *  S  K  Q  T  D  Q  L  Q  Y  L  F  R  V  *  *  S :   K  Q  K  K  N  H  :  K  K  Y   </first_frame>
            <second_frame>  T  S  F  N  P  E  P  P  L  A  S  V  T  A  I  S  A  V  C  A  F  L  C  K  F  S  L  I  I  C  G  I  S  V  Q  F  R  L  T  A  M  A  D  E  E  N  L  T  V  N  E  E  L  I  P  K  P  R  H  K  G  K  H  D  K  P  K  P  W  D  D  E  S  I  D  H  W  K  I  E  K  F  D  P  S  W  N  Q  S  G  L  L  E  V  S  S  F  S  T  L  F  P  Q  Y  R   : E  K  Y  L  Q  E  C  W  P  T  V  K  G  A  L  K  E  H  G  I  A  C  E  L  N  L  :  V  E  G  S  M  T  V  S  T  T  M  K  T  R  D  P  Y  I  I  V  K  A  R  D  L  I  K  L  L  S  R  S  V  P  A  P  Q  :  A  V  K  I  L  N  D  E  M  Q  C  D  I  I  K  I  G  N  M  V  R  N  K  :  E  R  F  V  K  R  R  Q  Y  L  V  G  P  N  S  S  T  L  K  :  A  L  E  I  L  T  G  C  Y  I  L  V  Q  :  G  N  T  V  A  A  M  G  S  F  K  G  L  K  Q  A  R  R  V  I  E  D  C  I  L  N  K  M  H  P  L  H  H  I  K  :  I  L  M  L  K  R  E  L  A  K  N  P  A  L  A  S  E  N  W  D  R  F  L  P  Q  F  K  K :   K  N  V  K  Q  K  K  V  Q  S  K  E  K  K  P  Y  T  P  F  P  P  P  Q  P  P  S  K  :  I  D  Q  Q  L  E  S  G  E  Y  F  L  S  D  K  K  K  M  A  K  Q  W  E  E  K  Q  V  K  Q  A  E  K  V  A  E  N  K  K  K  R  E  E  A  F  V  P  P  E  :  E  P  K  T  H  N  Q  D  V  S  N  V  D  K  D  D  V  T  A  M  A  S  S  L  K  :  R  K  A  K  E  F  R  K  Q  K  S  I  D  K  I  N  A  E  E  F  I  A  G  P  S  K  P  S  K  K  K  S  K  S  S  R  *  V  V  V  S  W  E  K  V  A  I  G  H  L  *  L  *  L  L  K  K  V  C  K  N  C  C  L  V  T  V  V  S  S  I  Q  Q  P  Y  *  C  *  N  S  R  G  P  S  L  P  C  H  Q  H  D  D  Q  L  V  L  V  S  G  I  F  G  N  G  E  N  T  L  F  S  P  F  S  C  D  D  G  R  S  P  *  C  C  C  F  V  Y  H  T  D  *  S  R  L  L  C  V  T  S  N  L  N  R  L  I  N  Y  S  I  Y  F  V  F  N  D   : L  N  K  K  K  I  I :   K  N  T  </second_frame>
            <third_frame>   L  P  L  T  L  S  R  H  W  P  L  *  L  L  F  L  Q  F  V  R  F  S  V  S  F  H  *  *  F  V  E  F  R  F  S  F  D  *  L  Q  W  Q  M  R  R  I  *  Q  L  M  K  S  *  F  R  S  R  G  T  R  E  N  M  T  N  Q  S  H  G  M  M  K  A  L  I  I  G  R  L  R  S  L  I  L  P  G  T  R  V  D  C  L  K  S  V  R  F  Q  L  Y  S  L  S  T  E  :  R  N  I  C  K  S  V  G  L  L  *  K  V  R  *  K  S  M  E  L  P  A  N  L  T  W :   L  K  D  L  *  Q  F  L  L  L  *  R  Q  G  I  P  I  L  L  *  K  L  G  I  *  *  N  F  C  Q  E  V  F  L  H  L  R :   L  S  K  S  *  M  M  R  C  N  V  T  *  S  R  S  A  T  W  F  A  T  R :   S  A  L  L  N  A  D  N  I  L  W  V  P  I  R  Q  L  *  R :   P  W  K  F  *  P  A  A  I  S  L  S  R :   E  T  Q  L  L  L  W  V  P  L  K  V  *  S  K  R  G  G  L  *  R  T  A  Y  *  T  R  C  I  R  Y  I  I  S  R :   S  S  C  *  R  E  S  L  Q  K  I  Q  L  W  L  V  R  T  G  T  D  F  F  R  N  L  R   : R  R  T  L  N  R  R  K  F  R  A  K  K  R  N  H  I  R  L  S  H  L  L  S  H  L  A  R :   L  I  N  N  W  K  V  V  N  T  S  *  V  T  R  R  R  W  Q  S  S  G  K  R  S  K  S  N  R  L  R  R  L  L  K  T  R  K  N  E  K  K  L  L  F  H  P  R :   N  Q  K  H  I  T  K  M  C  P  T  W  I  K  M  M  S  L  P  W  H  R  H  *  R :   E  K  Q  R  S  S  G  S  K  N  Q  L  I  R  S  T  L  R  N  L  L  Q  V  L  A  N  H  L  K  R  N  R  R  A  L  D  K  *  *  S  L  G  K  R  L  L  L  A  I  C  D  Y  D  C  *  R  K  S  V  K  I  A  V  L  S  L  L  Y  L  P  F  S  S  H  I  D  V  K  I  L  E  D  L  P  F  H  A  I  S  T  T  I  S  *  S  L  Y  L  A  F  L  E  T  G  K  T  L  F  F  P  P  L  V  V  M  M  G  E  V  H  S  V  V  A  L  C  T  I  L  I  D  R  V  C  F  V  S  Q  V  I  *  T  D  *  S  I  T  V  F  I  S  C  L  M  I  :  *  T  K  K  K  S   : *  K  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23964" stop="24279"/>
                    <exon start="25530" stop="25606"/>
                    <exon start="26760" stop="26870"/>
                    <exon start="27759" stop="27827"/>
                    <exon start="28729" stop="28785"/>
                    <exon start="29371" stop="29409"/>
                    <exon start="29562" stop="29666"/>
                    <exon start="29785" stop="29867"/>
                    <exon start="29968" stop="30049"/>
                    <exon start="30421" stop="30564"/>
                    <exon start="30656" stop="30730"/>
                    <exon start="30833" stop="30943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFNPEPPLASVTAISAVCAFLCKFSLIICGISVQFRLTAMADEENLTVNEELIPKPRHKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAGPSKPSKKKSKSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23963" e_stop="24279"/>
            <exon e_start="25530" e_stop="25606"/>
            <exon e_start="26760" e_stop="26870"/>
            <exon e_start="27759" e_stop="27827"/>
            <exon e_start="28729" e_stop="28785"/>
            <exon e_start="29371" e_stop="29409"/>
            <exon e_start="29562" e_stop="29666"/>
            <exon e_start="29785" e_stop="29867"/>
            <exon e_start="29968" e_stop="30049"/>
            <exon e_start="30421" e_stop="30564"/>
            <exon e_start="30656" e_stop="30730"/>
            <exon e_start="30833" e_stop="31276"/>
            <exon e_start="31943" e_stop="31962"/>
            <exon e_start="33210" e_stop="33217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.139" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.335" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.123" acc_prob="0.545" e_score="0.750"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23963" e_stop="24279" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.139">
            <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25530" e_stop="25606" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26760" e_stop="26870" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27759" e_stop="27827" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28729" e_stop="28785" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.013" acc_prob="0.881">
            <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29409" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.927">
            <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29562" e_stop="29666" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.335">
            <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29785" e_stop="29867" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.903" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29868" i_stop="29967" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29968" e_stop="30049" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30050" i_stop="30420" i_length="371"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30421" e_stop="30564" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30656" e_stop="30730" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="30833" e_stop="31276" e_length="444"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31277" i_stop="31942" i_length="666"/>
          </intron>
          <exon e_serial="13" e_score="0.750">
            <gDNA_exon_boundary e_start="31943" e_stop="31962" e_length="20"/>
          </exon>
          <intron i_serial="13" don_prob="0.123" acc_prob="0.545">
            <gDNA_intron_boundary i_start="31963" i_stop="33209" i_length="1247"/>
          </intron>
          <exon e_serial="14" e_score="0.875">
            <gDNA_exon_boundary e_start="33210" e_stop="33217" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23963" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
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              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23985" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23996" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
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              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23999" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24020" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24087" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28731" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29666"/>
              <exon start="29785" stop="29867"/>
              <exon start="29968" stop="30049"/>
              <exon start="30421" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="30893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31276"/>
              <exon start="31943" stop="31962"/>
              <exon start="33210" stop="33217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG : AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG : GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG : GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG : GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG : GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG : GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG : ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAA : GAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAG : ATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG : GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG : AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGT : ATAAACAAAAAAAAAATCAT : AAAAAATA</gDNA_template>
            <first_frame> H  F  L  *  P  *  A  A  I  G  L  C  N  C  Y  F  C  S  L  C  V  S  L  *  V  F  I  D  N  L  W  N  F  G  S  V  S  T  D  C  N  G  R  *  G  E  F  N  S  *  *  R  V  D  S  E  A  E  A  Q  G  K  T  *  Q  T  K  A  M  G  *  *  K  H  *  S  L  E  D  *  E  V  *  S  F  L  E  P  E  W  I  A  *  S  Q  F  V  F  N  S  I  P  S  V  Q  R :   E  I  F  A  R  V  L  A  Y  C  K  R  C  V  E  R  A  W  N  C  L  R  T  *  L   : G  *  R  I  Y  D  S  F  Y  Y  Y  E  D  K  G  S  L  Y  Y  C  K  S  *  G  F  D  K  T  F  V  K  K  C  S  C  T  S   : G  C  Q  N  P  E  *  *  D  A  M  *  H  N  Q  D  R  Q  H  G  S  Q  Q   : G  A  L  C  *  T  Q  T  I  S  C  G  S  Q  F  V  N  F  K   : G  P  G  N  F  D  R  L  L  Y  P  C  P   : G  K  H  S  C  C  Y  G  F  L  *  R  S  K  A  S  E  E  G  Y  R  G  L  H  I  E  Q  D  A  S  A  T  S  Y  Q   : D  P  H  A  E  E  R  A  C  K  K  S  S  S  G  *  *  E  L  G  Q  I  S  S  A  I  *  E  :  E  E  R  *  T  E  E  S  S  E  Q  R  K  E  T  I  Y  A  F  P  T  S  S  A  T  *  Q   : D  *  S  T  T  G  K  W  *  I  L  L  K  *  Q  E  E  D  G  K  A  V  G  R  E  A  S  Q  T  G  *  E  G  C  *  K  Q  E  K  T  R  R  S  F  C  S  T  R   : G  T  K  N  T  *  P  R  C  V  Q  R  G  *  R  *  C  H  C  H  G  I  V  I  E   : E  K  S  K  G  V  Q  E  A  K  I  N  *  *  D  Q  R  *  G  I  Y  C  R  S  *  Q  T  I  *  K  E  I  E  E  L  *  I  S  S  S  L  L  G  K  G  C  Y  W  P  F  V  I  M  I  A  E  E  S  L  *  K  L  L  S  C  H  C  C  I  F  H  S  A  A  I  L  M  L  K  F  *  R  T  F  P  S  M  P  S  A  R  R  S  A  S  P  C  I  W  H  F  W  K  R  G  K  H  S  F  F  P  L  *  L  *  *  W  A  K  S  I  V  L  L  L  C  V  P  Y  *  L  I  A  F  A  L  C  H  K  *  S  K  Q  T  D  Q  L  Q   : Y  K  Q  K  K  N  H  :  K  K   </first_frame>
            <second_frame>  T  S  F  N  P  E  P  P  L  A  S  V  T  A  I  S  A  V  C  A  F  L  C  K  F  S  L  I  I  C  G  I  S  V  Q  F  R  L  T  A  M  A  D  E  E  N  L  T  V  N  E  E  L  I  P  K  P  R  H  K  G  K  H  D  K  P  K  P  W  D  D  E  S  I  D  H  W  K  I  E  K  F  D  P  S  W  N  Q  S  G  L  L  E  V  S  S  F  S  T  L  F  P  Q  Y  R   : E  K  Y  L  Q  E  C  W  P  T  V  K  G  A  L  K  E  H  G  I  A  C  E  L  N  L  :  V  E  G  S  M  T  V  S  T  T  M  K  T  R  D  P  Y  I  I  V  K  A  R  D  L  I  K  L  L  S  R  S  V  P  A  P  Q  :  A  V  K  I  L  N  D  E  M  Q  C  D  I  I  K  I  G  N  M  V  R  N  K  :  E  R  F  V  K  R  R  Q  Y  L  V  G  P  N  S  S  T  L  K  :  A  L  E  I  L  T  G  C  Y  I  L  V  Q  :  G  N  T  V  A  A  M  G  S  F  K  G  L  K  Q  A  R  R  V  I  E  D  C  I  L  N  K  M  H  P  L  H  H  I  K  :  I  L  M  L  K  R  E  L  A  K  N  P  A  L  A  S  E  N  W  D  R  F  L  P  Q  F  K  K :   K  N  V  K  Q  K  K  V  Q  S  K  E  K  K  P  Y  T  P  F  P  P  P  Q  P  P  S  K  :  I  D  Q  Q  L  E  S  G  E  Y  F  L  S  D  K  K  K  M  A  K  Q  W  E  E  K  Q  V  K  Q  A  E  K  V  A  E  N  K  K  K  R  E  E  A  F  V  P  P  E  :  E  P  K  T  H  N  Q  D  V  S  N  V  D  K  D  D  V  T  A  M  A  S  S  L  K  :  R  K  A  K  E  F  R  K  Q  K  S  I  D  K  I  N  A  E  E  F  I  A  G  P  S  K  P  S  K  K  K  S  K  S  S  R  *  V  V  V  S  W  E  K  V  A  I  G  H  L  *  L  *  L  L  K  K  V  C  K  N  C  C  L  V  T  V  V  S  S  I  Q  Q  P  Y  *  C  *  N  S  R  G  P  S  L  P  C  H  Q  H  D  D  Q  L  V  L  V  S  G  I  F  G  N  G  E  N  T  L  F  S  P  F  S  C  D  D  G  R  S  P  *  C  C  C  F  V  Y  H  T  D  *  S  R  L  L  C  V  T  S  N  L  N  R  L  I  N  Y  S  :  I  N  K  K  K  I  I :   K  N  </second_frame>
            <third_frame>   L  P  L  T  L  S  R  H  W  P  L  *  L  L  F  L  Q  F  V  R  F  S  V  S  F  H  *  *  F  V  E  F  R  F  S  F  D  *  L  Q  W  Q  M  R  R  I  *  Q  L  M  K  S  *  F  R  S  R  G  T  R  E  N  M  T  N  Q  S  H  G  M  M  K  A  L  I  I  G  R  L  R  S  L  I  L  P  G  T  R  V  D  C  L  K  S  V  R  F  Q  L  Y  S  L  S  T  E  :  R  N  I  C  K  S  V  G  L  L  *  K  V  R  *  K  S  M  E  L  P  A  N  L  T  W :   L  K  D  L  *  Q  F  L  L  L  *  R  Q  G  I  P  I  L  L  *  K  L  G  I  *  *  N  F  C  Q  E  V  F  L  H  L  R :   L  S  K  S  *  M  M  R  C  N  V  T  *  S  R  S  A  T  W  F  A  T  R :   S  A  L  L  N  A  D  N  I  L  W  V  P  I  R  Q  L  *  R :   P  W  K  F  *  P  A  A  I  S  L  S  R :   E  T  Q  L  L  L  W  V  P  L  K  V  *  S  K  R  G  G  L  *  R  T  A  Y  *  T  R  C  I  R  Y  I  I  S  R :   S  S  C  *  R  E  S  L  Q  K  I  Q  L  W  L  V  R  T  G  T  D  F  F  R  N  L  R   : R  R  T  L  N  R  R  K  F  R  A  K  K  R  N  H  I  R  L  S  H  L  L  S  H  L  A  R :   L  I  N  N  W  K  V  V  N  T  S  *  V  T  R  R  R  W  Q  S  S  G  K  R  S  K  S  N  R  L  R  R  L  L  K  T  R  K  N  E  K  K  L  L  F  H  P  R :   N  Q  K  H  I  T  K  M  C  P  T  W  I  K  M  M  S  L  P  W  H  R  H  *  R :   E  K  Q  R  S  S  G  S  K  N  Q  L  I  R  S  T  L  R  N  L  L  Q  V  L  A  N  H  L  K  R  N  R  R  A  L  D  K  *  *  S  L  G  K  R  L  L  L  A  I  C  D  Y  D  C  *  R  K  S  V  K  I  A  V  L  S  L  L  Y  L  P  F  S  S  H  I  D  V  K  I  L  E  D  L  P  F  H  A  I  S  T  T  I  S  *  S  L  Y  L  A  F  L  E  T  G  K  T  L  F  F  P  P  L  V  V  M  M  G  E  V  H  S  V  V  A  L  C  T  I  L  I  D  R  V  C  F  V  S  Q  V  I  *  T  D  *  S  I  T  V :   *  T  K  K  K  S   : *  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23964" stop="24279"/>
                    <exon start="25530" stop="25606"/>
                    <exon start="26760" stop="26870"/>
                    <exon start="27759" stop="27827"/>
                    <exon start="28729" stop="28785"/>
                    <exon start="29371" stop="29409"/>
                    <exon start="29562" stop="29666"/>
                    <exon start="29785" stop="29867"/>
                    <exon start="29968" stop="30049"/>
                    <exon start="30421" stop="30564"/>
                    <exon start="30656" stop="30730"/>
                    <exon start="30833" stop="30943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFNPEPPLASVTAISAVCAFLCKFSLIICGISVQFRLTAMADEENLTVNEELIPKPRHKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAGPSKPSKKKSKSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="23963" e_stop="24279"/>
            <exon e_start="25530" e_stop="25606"/>
            <exon e_start="26760" e_stop="26870"/>
            <exon e_start="27759" e_stop="27827"/>
            <exon e_start="28729" e_stop="28785"/>
            <exon e_start="29371" e_stop="29409"/>
            <exon e_start="29562" e_stop="29666"/>
            <exon e_start="29785" e_stop="29867"/>
            <exon e_start="29968" e_stop="30049"/>
            <exon e_start="30421" e_stop="30564"/>
            <exon e_start="30656" e_stop="30730"/>
            <exon e_start="30833" e_stop="31276"/>
            <exon e_start="31527" e_stop="31553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.139" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.013" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.335" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23963" e_stop="24279" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.139">
            <gDNA_intron_boundary i_start="24280" i_stop="25529" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25530" e_stop="25606" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25607" i_stop="26759" i_length="1153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26760" e_stop="26870" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26871" i_stop="27758" i_length="888"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27759" e_stop="27827" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27828" i_stop="28728" i_length="901"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28729" e_stop="28785" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.013" acc_prob="0.881">
            <gDNA_intron_boundary i_start="28786" i_stop="29370" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29409" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.927">
            <gDNA_intron_boundary i_start="29410" i_stop="29561" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29562" e_stop="29666" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.335">
            <gDNA_intron_boundary i_start="29667" i_stop="29784" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29785" e_stop="29867" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.903" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29868" i_stop="29967" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29968" e_stop="30049" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30050" i_stop="30420" i_length="371"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30421" e_stop="30564" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="30565" i_stop="30655" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30656" e_stop="30730" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30731" i_stop="30832" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="30833" e_stop="31276" e_length="444"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31277" i_stop="31526" i_length="250"/>
          </intron>
          <exon e_serial="13" e_score="0.667">
            <gDNA_exon_boundary e_start="31527" e_stop="31553" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23963" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23985" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23996" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23999" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24020" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24087" stop="24279"/>
              <exon start="25530" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25606"/>
              <exon start="26760" stop="26870"/>
              <exon start="27759" stop="27827"/>
              <exon start="28729" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28731" stop="28785"/>
              <exon start="29371" stop="29409"/>
              <exon start="29562" stop="29666"/>
              <exon start="29785" stop="29849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29666"/>
              <exon start="29785" stop="29867"/>
              <exon start="29968" stop="30049"/>
              <exon start="30421" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="30893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30564"/>
              <exon start="30656" stop="30730"/>
              <exon start="30833" stop="31266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30657" stop="30730"/>
              <exon start="30833" stop="31276"/>
              <exon start="31527" stop="31553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30658" stop="30730"/>
              <exon start="30833" stop="31179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTCCTTTAACCCTGAGCCGCCATTGGCCTCTGTAACTGCTATTTCTGCAGTTTGTGCGTTTCTCTGTAAGTTTTCATTGATAATTTGTGGAATTTCGGTTCAGTTTCGACTGACTGCAATGGCAGATGAGGAGAATTTAACAGTTAATGAAGAGTTGATTCCGAAGCCGAGGCACAAGGGAAAACATGACAAACCAAAGCCATGGGATGATGAAAGCATTGATCATTGGAAGATTGAGAAGTTTGATCCTTCCTGGAACCAGAGTGGATTGCTTGAAGTCAGTTCGTTTTCAACTCTATTCCCTCAGTACAGAG : AGAAATATTTGCAAGAGTGTTGGCCTACTGTAAAAGGTGCGTTGAAAGAGCATGGAATTGCCTGCGAACTTAACTTG : GTTGAAGGATCTATGACAGTTTCTACTACTATGAAGACAAGGGATCCCTATATTATTGTAAAAGCTAGGGATTTGATAAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAG : GCTGTCAAAATCCTGAATGATGAGATGCAATGTGACATAATCAAGATCGGCAACATGGTTCGCAACAAG : GAGCGCTTTGTTAAACGCAGACAATATCTTGTGGGTCCCAATTCGTCAACTTTAAAG : GCCCTGGAAATTTTGACCGGCTGCTATATCCTTGTCCAG : GGAAACACAGTTGCTGCTATGGGTTCCTTTAAAGGTCTAAAGCAAGCGAGGAGGGTTATAGAGGACTGCATATTGAACAAGATGCATCCGCTACATCATATCAAG : ATCCTCATGCTGAAGAGAGAGCTTGCAAAAAATCCAGCTCTGGCTAGTGAGAACTGGGACAGATTTCTTCCGCAATTTAAGAA : GAAGAACGTTAAACAGAAGAAAGTTCAGAGCAAAGAAAAGAAACCATATACGCCTTTCCCACCTCCTCAGCCACCTAGCAAG : ATTGATCAACAACTGGAAAGTGGTGAATACTTCTTAAGTGACAAGAAGAAGATGGCAAAGCAGTGGGAAGAGAAGCAAGTCAAACAGGCTGAGAAGGTTGCTGAAAACAAGAAAAAACGAGAAGAAGCTTTTGTTCCACCCGAG : GAACCAAAAACACATAACCAAGATGTGTCCAACGTGGATAAAGATGATGTCACTGCCATGGCATCGTCATTGAAG : AGAAAAGCAAAGGAGTTCAGGAAGCAAAAATCAATTGATAAGATCAACGCTGAGGAATTTATTGCAGGTCCTAGCAAACCATCTAAAAAGAAATCGAAGAGCTCTAGATAAGTAGTAGTCTCTTGGGAAAAGGTTGCTATTGGCCATTTGTGATTATGATTGCTGAAGAAAGTCTGTAAAAATTGCTGTCTTGTCACTGTTGTATCTTCCATTCAGCAGCCATATTGATGTTAAAATTCTAGAGGACCTTCCCTTCCATGCCATCAGCACGACGATCAGCTAGTCCTTGTATCTGGCATTTTTGGAAACGGGGAAAACACTCTTTTTTCCCCCTTTAGTTGTGATGATGGGCGAAGTCCATAGTGTTGTTGCTTTGTGTACCATACTGATTGATCGCGTTTGCTTTGTGTCACAAGTAATCTAAACAGACTGATCAATTACAGT : AAAACTAAAACAAAGGATCAAACGAAA</gDNA_template>
            <first_frame> H  F  L  *  P  *  A  A  I  G  L  C  N  C  Y  F  C  S  L  C  V  S  L  *  V  F  I  D  N  L  W  N  F  G  S  V  S  T  D  C  N  G  R  *  G  E  F  N  S  *  *  R  V  D  S  E  A  E  A  Q  G  K  T  *  Q  T  K  A  M  G  *  *  K  H  *  S  L  E  D  *  E  V  *  S  F  L  E  P  E  W  I  A  *  S  Q  F  V  F  N  S  I  P  S  V  Q  R :   E  I  F  A  R  V  L  A  Y  C  K  R  C  V  E  R  A  W  N  C  L  R  T  *  L   : G  *  R  I  Y  D  S  F  Y  Y  Y  E  D  K  G  S  L  Y  Y  C  K  S  *  G  F  D  K  T  F  V  K  K  C  S  C  T  S   : G  C  Q  N  P  E  *  *  D  A  M  *  H  N  Q  D  R  Q  H  G  S  Q  Q   : G  A  L  C  *  T  Q  T  I  S  C  G  S  Q  F  V  N  F  K   : G  P  G  N  F  D  R  L  L  Y  P  C  P   : G  K  H  S  C  C  Y  G  F  L  *  R  S  K  A  S  E  E  G  Y  R  G  L  H  I  E  Q  D  A  S  A  T  S  Y  Q   : D  P  H  A  E  E  R  A  C  K  K  S  S  S  G  *  *  E  L  G  Q  I  S  S  A  I  *  E  :  E  E  R  *  T  E  E  S  S  E  Q  R  K  E  T  I  Y  A  F  P  T  S  S  A  T  *  Q   : D  *  S  T  T  G  K  W  *  I  L  L  K  *  Q  E  E  D  G  K  A  V  G  R  E  A  S  Q  T  G  *  E  G  C  *  K  Q  E  K  T  R  R  S  F  C  S  T  R   : G  T  K  N  T  *  P  R  C  V  Q  R  G  *  R  *  C  H  C  H  G  I  V  I  E   : E  K  S  K  G  V  Q  E  A  K  I  N  *  *  D  Q  R  *  G  I  Y  C  R  S  *  Q  T  I  *  K  E  I  E  E  L  *  I  S  S  S  L  L  G  K  G  C  Y  W  P  F  V  I  M  I  A  E  E  S  L  *  K  L  L  S  C  H  C  C  I  F  H  S  A  A  I  L  M  L  K  F  *  R  T  F  P  S  M  P  S  A  R  R  S  A  S  P  C  I  W  H  F  W  K  R  G  K  H  S  F  F  P  L  *  L  *  *  W  A  K  S  I  V  L  L  L  C  V  P  Y  *  L  I  A  F  A  L  C  H  K  *  S  K  Q  T  D  Q  L  Q   : *  N  *  N  K  G  S  N  E  </first_frame>
            <second_frame>  T  S  F  N  P  E  P  P  L  A  S  V  T  A  I  S  A  V  C  A  F  L  C  K  F  S  L  I  I  C  G  I  S  V  Q  F  R  L  T  A  M  A  D  E  E  N  L  T  V  N  E  E  L  I  P  K  P  R  H  K  G  K  H  D  K  P  K  P  W  D  D  E  S  I  D  H  W  K  I  E  K  F  D  P  S  W  N  Q  S  G  L  L  E  V  S  S  F  S  T  L  F  P  Q  Y  R   : E  K  Y  L  Q  E  C  W  P  T  V  K  G  A  L  K  E  H  G  I  A  C  E  L  N  L  :  V  E  G  S  M  T  V  S  T  T  M  K  T  R  D  P  Y  I  I  V  K  A  R  D  L  I  K  L  L  S  R  S  V  P  A  P  Q  :  A  V  K  I  L  N  D  E  M  Q  C  D  I  I  K  I  G  N  M  V  R  N  K  :  E  R  F  V  K  R  R  Q  Y  L  V  G  P  N  S  S  T  L  K  :  A  L  E  I  L  T  G  C  Y  I  L  V  Q  :  G  N  T  V  A  A  M  G  S  F  K  G  L  K  Q  A  R  R  V  I  E  D  C  I  L  N  K  M  H  P  L  H  H  I  K  :  I  L  M  L  K  R  E  L  A  K  N  P  A  L  A  S  E  N  W  D  R  F  L  P  Q  F  K  K :   K  N  V  K  Q  K  K  V  Q  S  K  E  K  K  P  Y  T  P  F  P  P  P  Q  P  P  S  K  :  I  D  Q  Q  L  E  S  G  E  Y  F  L  S  D  K  K  K  M  A  K  Q  W  E  E  K  Q  V  K  Q  A  E  K  V  A  E  N  K  K  K  R  E  E  A  F  V  P  P  E  :  E  P  K  T  H  N  Q  D  V  S  N  V  D  K  D  D  V  T  A  M  A  S  S  L  K  :  R  K  A  K  E  F  R  K  Q  K  S  I  D  K  I  N  A  E  E  F  I  A  G  P  S  K  P  S  K  K  K  S  K  S  S  R  *  V  V  V  S  W  E  K  V  A  I  G  H  L  *  L  *  L  L  K  K  V  C  K  N  C  C  L  V  T  V  V  S  S  I  Q  Q  P  Y  *  C  *  N  S  R  G  P  S  L  P  C  H  Q  H  D  D  Q  L  V  L  V  S  G  I  F  G  N  G  E  N  T  L  F  S  P  F  S  C  D  D  G  R  S  P  *  C  C  C  F  V  Y  H  T  D  *  S  R  L  L  C  V  T  S  N  L  N  R  L  I  N  Y  S  :  K  T  K  T  K  D  Q  T  K </second_frame>
            <third_frame>   L  P  L  T  L  S  R  H  W  P  L  *  L  L  F  L  Q  F  V  R  F  S  V  S  F  H  *  *  F  V  E  F  R  F  S  F  D  *  L  Q  W  Q  M  R  R  I  *  Q  L  M  K  S  *  F  R  S  R  G  T  R  E  N  M  T  N  Q  S  H  G  M  M  K  A  L  I  I  G  R  L  R  S  L  I  L  P  G  T  R  V  D  C  L  K  S  V  R  F  Q  L  Y  S  L  S  T  E  :  R  N  I  C  K  S  V  G  L  L  *  K  V  R  *  K  S  M  E  L  P  A  N  L  T  W :   L  K  D  L  *  Q  F  L  L  L  *  R  Q  G  I  P  I  L  L  *  K  L  G  I  *  *  N  F  C  Q  E  V  F  L  H  L  R :   L  S  K  S  *  M  M  R  C  N  V  T  *  S  R  S  A  T  W  F  A  T  R :   S  A  L  L  N  A  D  N  I  L  W  V  P  I  R  Q  L  *  R :   P  W  K  F  *  P  A  A  I  S  L  S  R :   E  T  Q  L  L  L  W  V  P  L  K  V  *  S  K  R  G  G  L  *  R  T  A  Y  *  T  R  C  I  R  Y  I  I  S  R :   S  S  C  *  R  E  S  L  Q  K  I  Q  L  W  L  V  R  T  G  T  D  F  F  R  N  L  R   : R  R  T  L  N  R  R  K  F  R  A  K  K  R  N  H  I  R  L  S  H  L  L  S  H  L  A  R :   L  I  N  N  W  K  V  V  N  T  S  *  V  T  R  R  R  W  Q  S  S  G  K  R  S  K  S  N  R  L  R  R  L  L  K  T  R  K  N  E  K  K  L  L  F  H  P  R :   N  Q  K  H  I  T  K  M  C  P  T  W  I  K  M  M  S  L  P  W  H  R  H  *  R :   E  K  Q  R  S  S  G  S  K  N  Q  L  I  R  S  T  L  R  N  L  L  Q  V  L  A  N  H  L  K  R  N  R  R  A  L  D  K  *  *  S  L  G  K  R  L  L  L  A  I  C  D  Y  D  C  *  R  K  S  V  K  I  A  V  L  S  L  L  Y  L  P  F  S  S  H  I  D  V  K  I  L  E  D  L  P  F  H  A  I  S  T  T  I  S  *  S  L  Y  L  A  F  L  E  T  G  K  T  L  F  F  P  P  L  V  V  M  M  G  E  V  H  S  V  V  A  L  C  T  I  L  I  D  R  V  C  F  V  S  Q  V  I  *  T  D  *  S  I  T  V :   K  L  K  Q  R  I  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23964" stop="24279"/>
                    <exon start="25530" stop="25606"/>
                    <exon start="26760" stop="26870"/>
                    <exon start="27759" stop="27827"/>
                    <exon start="28729" stop="28785"/>
                    <exon start="29371" stop="29409"/>
                    <exon start="29562" stop="29666"/>
                    <exon start="29785" stop="29867"/>
                    <exon start="29968" stop="30049"/>
                    <exon start="30421" stop="30564"/>
                    <exon start="30656" stop="30730"/>
                    <exon start="30833" stop="30943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFNPEPPLASVTAISAVCAFLCKFSLIICGISVQFRLTAMADEENLTVNEELIPKPRHKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAGPSKPSKKKSKSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59577" PGL_stop="56107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59577" e_stop="59487"/>
            <exon e_start="58230" e_stop="58183"/>
            <exon e_start="56718" e_stop="56107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59577" e_stop="59487" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59486" i_stop="58231" i_length="1256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58230" e_stop="58183" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58182" i_stop="56719" i_length="1464"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="56718" e_stop="56107" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59577" stop="59487"/>
              <exon start="58230" stop="58183"/>
              <exon start="56718" stop="56107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538073" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56567" stop="56107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268418" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56493" stop="56126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGCCGCTATTTGAAGTTCAAACAGATAATTGGGAGTGCTTCCGTTCTGTCCTTTGGGATCCAGCTCACGCCGATTGTGCTGTACCTCAA : GAACTAGAGACGGAGGAAGTTCTGAAGCAATTGAAGTATATGGAGATG : TTGAAACACCGGCTGGTAGTTAAGAGGCGCAAATTGAATCAAACCTCAGGTGCTGGCTCACGGTTCTTGACAAAGAAATGAGAAGATACAGGCTTCATGTACGGAAATGTTCATCTTGTACATTTAAGCATAAAAATTTTGGATAATTGGAGTAGTACTACATGAGATTTTCATCACAGTATTCTGATTTAATTGCTTCAGAAACATAGTTGTACAATTTAGAAGGTGCAAGGAATCAGCTGCAAAGTCGACTTGATCTTTCCTGGCTTCACTTCATCACAGTACGCTGATGTAATTGCTTCAGAAACATAATTGTACAATTTAGTAGGCGCAAGGAATCAGCTGCAAACTCGACTTGATCTTTCCTGGCTTCACTTCATCTCTTAGTCCATCTATCTCTTCTCTTTTACGTTTCGCATTGTCAGGGCTGACAAATTAACATTTCACTTTCTTCGCCCTTATGTCACATTTCTGTAATGCCTTGATGAATTTGTGAGGCCCTGGTTTAGTCATTGCAGGATAGAGAGCAGGTTGTGAGGATATGGGGAATTTGTACTCGTGATGACTTAATGTTAGTGCATATTTATGTTTCTATTTTTCTCTCTGGTATAA</gDNA_template>
            <first_frame> G  A  A  I  *  S  S  N  R  *  L  G  V  L  P  F  C  P  L  G  S  S  S  R  R  L  C  C  T  S   : R  T  R  D  G  G  S  S  E  A  I  E  V  Y  G  D   : V  E  T  P  A  G  S  *  E  A  Q  I  E  S  N  L  R  C  W  L  T  V  L  D  K  E  M  R  R  Y  R  L  H  V  R  K  C  S  S  C  T  F  K  H  K  N  F  G  *  L  E  *  Y  Y  M  R  F  S  S  Q  Y  S  D  L  I  A  S  E  T  *  L  Y  N  L  E  G  A  R  N  Q  L  Q  S  R  L  D  L  S  W  L  H  F  I  T  V  R  *  C  N  C  F  R  N  I  I  V  Q  F  S  R  R  K  E  S  A  A  N  S  T  *  S  F  L  A  S  L  H  L  L  V  H  L  S  L  L  F  Y  V  S  H  C  Q  G  *  Q  I  N  I  S  L  S  S  P  L  C  H  I  S  V  M  P  *  *  I  C  E  A  L  V  *  S  L  Q  D  R  E  Q  V  V  R  I  W  G  I  C  T  R  D  D  L  M  L  V  H  I  Y  V  S  I  F  L  S  G  I  </first_frame>
            <second_frame>  A  P  L  F  E  V  Q  T  D  N  W  E  C  F  R  S  V  L  W  D  P  A  H  A  D  C  A  V  P  Q  :  E  L  E  T  E  E  V  L  K  Q  L  K  Y  M  E  M  :  L  K  H  R  L  V  V  K  R  R  K  L  N  Q  T  S  G  A  G  S  R  F  L  T  K  K  *  E  D  T  G  F  M  Y  G  N  V  H  L  V  H  L  S  I  K  I  L  D  N  W  S  S  T  T  *  D  F  H  H  S  I  L  I  *  L  L  Q  K  H  S  C  T  I  *  K  V  Q  G  I  S  C  K  V  D  L  I  F  P  G  F  T  S  S  Q  Y  A  D  V  I  A  S  E  T  *  L  Y  N  L  V  G  A  R  N  Q  L  Q  T  R  L  D  L  S  W  L  H  F  I  S  *  S  I  Y  L  F  S  F  T  F  R  I  V  R  A  D  K  L  T  F  H  F  L  R  P  Y  V  T  F  L  *  C  L  D  E  F  V  R  P  W  F  S  H  C  R  I  E  S  R  L  *  G  Y  G  E  F  V  L  V  M  T  *  C  *  C  I  F  M  F  L  F  F  S  L  V  * </second_frame>
            <third_frame>   R  R  Y  L  K  F  K  Q  I  I  G  S  A  S  V  L  S  F  G  I  Q  L  T  P  I  V  L  Y  L  K :   N  *  R  R  R  K  F  *  S  N  *  S  I  W  R  C :   *  N  T  G  W  *  L  R  G  A  N  *  I  K  P  Q  V  L  A  H  G  S  *  Q  R  N  E  K  I  Q  A  S  C  T  E  M  F  I  L  Y  I  *  A  *  K  F  W  I  I  G  V  V  L  H  E  I  F  I  T  V  F  *  F  N  C  F  R  N  I  V  V  Q  F  R  R  C  K  E  S  A  A  K  S  T  *  S  F  L  A  S  L  H  H  S  T  L  M  *  L  L  Q  K  H  N  C  T  I  *  *  A  Q  G  I  S  C  K  L  D  L  I  F  P  G  F  T  S  S  L  S  P  S  I  S  S  L  L  R  F  A  L  S  G  L  T  N  *  H  F  T  F  F  A  L  M  S  H  F  C  N  A  L  M  N  L  *  G  P  G  L  V  I  A  G  *  R  A  G  C  E  D  M  G  N  L  Y  S  *  *  L  N  V  S  A  Y  L  C  F  Y  F  S  L  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59576" stop="59487"/>
                    <exon start="58230" stop="58183"/>
                    <exon start="56718" stop="56638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLFEVQTDNWECFRSVLWDPAHADCAVPQELETEEVLKQLKYMEMLKHRLVVKRRKLNQTSGAGSRFLTKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66146" PGL_stop="60066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66146" e_stop="66055"/>
            <exon e_start="64384" e_stop="63116"/>
            <exon e_start="60326" e_stop="60266"/>
            <exon e_start="60173" e_stop="60066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66146" e_stop="66055" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.969">
            <gDNA_intron_boundary i_start="66054" i_stop="64385" i_length="1670"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="64384" e_stop="63116" e_length="1269"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63115" i_stop="60327" i_length="2789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60326" e_stop="60266" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60265" i_stop="60174" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="60173" e_stop="60066" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66146" stop="66055"/>
              <exon start="64384" stop="63779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66128" stop="66055"/>
              <exon start="64384" stop="63881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66126" stop="66055"/>
              <exon start="64384" stop="63771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66126" stop="66055"/>
              <exon start="64384" stop="63891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66091" stop="66055"/>
              <exon start="64384" stop="63897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64212" stop="63415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63700" stop="63116"/>
              <exon start="60326" stop="60266"/>
              <exon start="60173" stop="60066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63695" stop="63116"/>
              <exon start="60326" stop="60307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63695" stop="63189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63677" stop="63116"/>
              <exon start="60326" stop="60266"/>
              <exon start="60173" stop="60107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547996" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTCGAGGCCCTGTGTGCCACTTCTTCCATCTCCGCCAGTGCCGCACTTGGTTTCTTCTGCGGTTTTTCATCTTCACTTTCAACCAAAG : GGAGTACAACAACAACAAAAAGGCTCTGATACTTCATTTGATTGGATGTATAGGAGCATATCATTTTGGTGGATGTACGCGTAAGCAAGAGAAACATAATTCTTTTATATTAGTGTGTGGCTCAATTGATATGCTGATAAAAAGTTATCTTTCTGGTTGCAAAGAAACTTCTTTTGCAACCTCTGTCTCATCTGAGATCACGAAACGAGCTTCATGCGACCAGGGTTCTGGTGCTGAATTGTCAGAAATGAGTCCAGAAAAAGATAAATATCCTATTGATGTCTGTATGGAATCTGATTCAAAGGATGGTGATCCTTGTTCCTTAAACAGTCTAGATGGTCCACGACCTTCAACTTTCAGTGCCATGCCTGGAAGTTTAAAGCCCATAGTATATCGTAGGAAAAAGTTCAAACAAAACCCTCGTCCTACTTTCTTCATTGAACCATCAGCTGAAGTTAGGCCTAGCAATGGATGCCCTTCTGAGCTCTGTTCTGAAGTCCATTCAGGAACTTTGAAGGAAGGCATAGTTGCTGCTGAGAAATTAGCTACAGCAACTCCTGTTCTTCTGCCTGCTGAGTGTAACAGAGGAAACCTTCTATCTAAATCAAATTCTTGTGATGGTAGACCTGAAGGGGAAGAGCAGTGCTCTGAAGCAGCATCAAGAAGTGATATGCAAAGGACTTCAAATGTTTGCATAAATGATAGCCATTCGTCATCAAAGTGTAATTTGGATTTTGGGTCTTCTTCATTGAAGACGCTTGTGGATGATGCTGGTGAGTGCTCCTCATCTGGTGCTTTATTTCCTGAAAGATTGGGTAATAATATGCCAGAAAAGGATATATGCACAGCAATTCTTAGAGGTTATGGGTTGCTTGAAAATGTTGTGGTTACAAAACTCGGAGCATCAACAGAAGACTTTTATACCAGTTCTGACAACTGCTGTTTAATCTCATGCAAAGCCTGTGATTGTTCAGAATCTACAGTGAAGATGCTAATCTGTGATAACTGTGATGATGCATATCATTTATCGTGCTGCAAACCCCATAAAAAGATAGCACCCGAGGATGAGTGGTTTTGCCAAACTTGTTTGATTAAGAAGCAGAGAGTGCTCAAGAAATCATCTTGTAATGAGAGTTCTAGCAATTCTCCATCTGAAGGTGAATCAGGACCTACAGCTCTCATGTTGAAGGACACCGGTTATAAAACTCGTGTTCGTATTAGCAAAAAGTATCAAGCTGAGATTCCTGACTGGACAGGTCCAGCGACAGA : TGACGCTGGTTGTAGTGGTGAACCATTTGAAATCACACCTTCAGAGAATCTCTGCTTGCCT : AAACAATCTTCTAACGAACATATGAGGATTAGCTCTATTGGCAATTGGCTTCAGTGCCGGCAGGTCAACGAAGGTTTTGGGAAACGTGTGGATGGAAGTATCTGTGGG</gDNA_template>
            <first_frame> F  G  R  G  P  V  C  H  F  F  H  L  R  Q  C  R  T  W  F  L  L  R  F  F  I  F  T  F  N  Q  R :   E  Y  N  N  N  K  K  A  L  I  L  H  L  I  G  C  I  G  A  Y  H  F  G  G  C  T  R  K  Q  E  K  H  N  S  F  I  L  V  C  G  S  I  D  M  L  I  K  S  Y  L  S  G  C  K  E  T  S  F  A  T  S  V  S  S  E  I  T  K  R  A  S  C  D  Q  G  S  G  A  E  L  S  E  M  S  P  E  K  D  K  Y  P  I  D  V  C  M  E  S  D  S  K  D  G  D  P  C  S  L  N  S  L  D  G  P  R  P  S  T  F  S  A  M  P  G  S  L  K  P  I  V  Y  R  R  K  K  F  K  Q  N  P  R  P  T  F  F  I  E  P  S  A  E  V  R  P  S  N  G  C  P  S  E  L  C  S  E  V  H  S  G  T  L  K  E  G  I  V  A  A  E  K  L  A  T  A  T  P  V  L  L  P  A  E  C  N  R  G  N  L  L  S  K  S  N  S  C  D  G  R  P  E  G  E  E  Q  C  S  E  A  A  S  R  S  D  M  Q  R  T  S  N  V  C  I  N  D  S  H  S  S  S  K  C  N  L  D  F  G  S  S  S  L  K  T  L  V  D  D  A  G  E  C  S  S  S  G  A  L  F  P  E  R  L  G  N  N  M  P  E  K  D  I  C  T  A  I  L  R  G  Y  G  L  L  E  N  V  V  V  T  K  L  G  A  S  T  E  D  F  Y  T  S  S  D  N  C  C  L  I  S  C  K  A  C  D  C  S  E  S  T  V  K  M  L  I  C  D  N  C  D  D  A  Y  H  L  S  C  C  K  P  H  K  K  I  A  P  E  D  E  W  F  C  Q  T  C  L  I  K  K  Q  R  V  L  K  K  S  S  C  N  E  S  S  S  N  S  P  S  E  G  E  S  G  P  T  A  L  M  L  K  D  T  G  Y  K  T  R  V  R  I  S  K  K  Y  Q  A  E  I  P  D  W  T  G  P  A  T  D :   D  A  G  C  S  G  E  P  F  E  I  T  P  S  E  N  L  C  L  P  :  K  Q  S  S  N  E  H  M  R  I  S  S  I  G  N  W  L  Q  C  R  Q  V  N  E  G  F  G  K  R  V  D  G  S  I  C  G </first_frame>
            <second_frame>  L  V  E  A  L  C  A  T  S  S  I  S  A  S  A  A  L  G  F  F  C  G  F  S  S  S  L  S  T  K   : G  S  T  T  T  T  K  R  L  *  Y  F  I  *  L  D  V  *  E  H  I  I  L  V  D  V  R  V  S  K  R  N  I  I  L  L  Y  *  C  V  A  Q  L  I  C  *  *  K  V  I  F  L  V  A  K  K  L  L  L  Q  P  L  S  H  L  R  S  R  N  E  L  H  A  T  R  V  L  V  L  N  C  Q  K  *  V  Q  K  K  I  N  I  L  L  M  S  V  W  N  L  I  Q  R  M  V  I  L  V  P  *  T  V  *  M  V  H  D  L  Q  L  S  V  P  C  L  E  V  *  S  P  *  Y  I  V  G  K  S  S  N  K  T  L  V  L  L  S  S  L  N  H  Q  L  K  L  G  L  A  M  D  A  L  L  S  S  V  L  K  S  I  Q  E  L  *  R  K  A  *  L  L  L  R  N  *  L  Q  Q  L  L  F  F  C  L  L  S  V  T  E  E  T  F  Y  L  N  Q  I  L  V  M  V  D  L  K  G  K  S  S  A  L  K  Q  H  Q  E  V  I  C  K  G  L  Q  M  F  A  *  M  I  A  I  R  H  Q  S  V  I  W  I  L  G  L  L  H  *  R  R  L  W  M  M  L  V  S  A  P  H  L  V  L  Y  F  L  K  D  W  V  I  I  C  Q  K  R  I  Y  A  Q  Q  F  L  E  V  M  G  C  L  K  M  L  W  L  Q  N  S  E  H  Q  Q  K  T  F  I  P  V  L  T  T  A  V  *  S  H  A  K  P  V  I  V  Q  N  L  Q  *  R  C  *  S  V  I  T  V  M  M  H  I  I  Y  R  A  A  N  P  I  K  R  *  H  P  R  M  S  G  F  A  K  L  V  *  L  R  S  R  E  C  S  R  N  H  L  V  M  R  V  L  A  I  L  H  L  K  V  N  Q  D  L  Q  L  S  C  *  R  T  P  V  I  K  L  V  F  V  L  A  K  S  I  K  L  R  F  L  T  G  Q  V  Q  R  Q   : M  T  L  V  V  V  V  N  H  L  K  S  H  L  Q  R  I  S  A  C  L :   N  N  L  L  T  N  I  *  G  L  A  L  L  A  I  G  F  S  A  G  R  S  T  K  V  L  G  N  V  W  M  E  V  S  V   </second_frame>
            <third_frame>   W  S  R  P  C  V  P  L  L  P  S  P  P  V  P  H  L  V  S  S  A  V  F  H  L  H  F  Q  P  K  :  G  V  Q  Q  Q  Q  K  G  S  D  T  S  F  D  W  M  Y  R  S  I  S  F  W  W  M  Y  A  *  A  R  E  T  *  F  F  Y  I  S  V  W  L  N  *  Y  A  D  K  K  L  S  F  W  L  Q  R  N  F  F  C  N  L  C  L  I  *  D  H  E  T  S  F  M  R  P  G  F  W  C  *  I  V  R  N  E  S  R  K  R  *  I  S  Y  *  C  L  Y  G  I  *  F  K  G  W  *  S  L  F  L  K  Q  S  R  W  S  T  T  F  N  F  Q  C  H  A  W  K  F  K  A  H  S  I  S  *  E  K  V  Q  T  K  P  S  S  Y  F  L  H  *  T  I  S  *  S  *  A  *  Q  W  M  P  F  *  A  L  F  *  S  P  F  R  N  F  E  G  R  H  S  C  C  *  E  I  S  Y  S  N  S  C  S  S  A  C  *  V  *  Q  R  K  P  S  I  *  I  K  F  L  *  W  *  T  *  R  G  R  A  V  L  *  S  S  I  K  K  *  Y  A  K  D  F  K  C  L  H  K  *  *  P  F  V  I  K  V  *  F  G  F  W  V  F  F  I  E  D  A  C  G  *  C  W  *  V  L  L  I  W  C  F  I  S  *  K  I  G  *  *  Y  A  R  K  G  Y  M  H  S  N  S  *  R  L  W  V  A  *  K  C  C  G  Y  K  T  R  S  I  N  R  R  L  L  Y  Q  F  *  Q  L  L  F  N  L  M  Q  S  L  *  L  F  R  I  Y  S  E  D  A  N  L  *  *  L  *  *  C  I  S  F  I  V  L  Q  T  P  *  K  D  S  T  R  G  *  V  V  L  P  N  L  F  D  *  E  A  E  S  A  Q  E  I  I  L  *  *  E  F  *  Q  F  S  I  *  R  *  I  R  T  Y  S  S  H  V  E  G  H  R  L  *  N  S  C  S  Y  *  Q  K  V  S  S  *  D  S  *  L  D  R  S  S  D  R  :  *  R  W  L  *  W  *  T  I  *  N  H  T  F  R  E  S  L  L  A   : *  T  I  F  *  R  T  Y  E  D  *  L  Y  W  Q  L  A  S  V  P  A  G  Q  R  R  F  W  E  T  C  G  W  K  Y  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66146" stop="66055"/>
                    <exon start="64384" stop="63116"/>
                    <exon start="60326" stop="60266"/>
                    <exon start="60173" stop="60066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGRGPVCHFFHLRQCRTWFLLRFFIFTFNQREYNNNKKALILHLIGCIGAYHFGGCTRKQEKHNSFILVCGSIDMLIKSYLSGCKETSFATSVSSEITKRASCDQGSGAELSEMSPEKDKYPIDVCMESDSKDGDPCSLNSLDGPRPSTFSAMPGSLKPIVYRRKKFKQNPRPTFFIEPSAEVRPSNGCPSELCSEVHSGTLKEGIVAAEKLATATPVLLPAECNRGNLLSKSNSCDGRPEGEEQCSEAASRSDMQRTSNVCINDSHSSSKCNLDFGSSSLKTLVDDAGECSSSGALFPERLGNNMPEKDICTAILRGYGLLENVVVTKLGASTEDFYTSSDNCCLISCKACDCSESTVKMLICDNCDDAYHLSCCKPHKKIAPEDEWFCQTCLIKKQRVLKKSSCNESSSNSPSEGESGPTALMLKDTGYKTRVRISKKYQAEIPDWTGPATDDAGCSGEPFEITPSENLCLPKQSSNEHMRISSIGNWLQCRQVNEGFGKRVDGSICG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="98477" PGL_stop="100288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98477" e_stop="98817"/>
            <exon e_start="99438" e_stop="100288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.994"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="98477" e_stop="98817" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98818" i_stop="99437" i_length="620"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="99438" e_stop="100288" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98477" stop="98817"/>
              <exon start="99438" stop="100008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99796" stop="100288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCCGGATCGTCTGGCTGGAGAGCTGTACTTCCTTGATGATACAATCTCTTTTACACCTGAGGAACTTTCCAGGGCTCCGGCTGAAGTCTTAGGCAGAAGCAGCCATGGTACATCATACAGGGCAACACTGGAGAATGGGTTGCTTCTGACTGTGAAATGGTTGAGAGAAGGAGTGGCGAAGCAGAGGAAGGATTTTGCGAAGGAGGCTAAAGAGTTTACTAATATTAGGCATCCTAATGTAGTAGGATTAAGAGGTTACTACTGGGGTCCCACACAACATGAGAAGCTCATTCTTTCGGATTATATATCTCCTGGAAGTCTTGCAAGTTTCCTCTATG : ATCGGCCTGGTAGAAAAGGTCCACCACTAACCTGGCCCCAAAGACTCAAAATATCAGTTGATGTTGCACGTGGCTTGAACTATCTCCATTTTGATCGGGAGGTTCCACATGGAAATCTTAAAGCAACCAACATCTTGTTGGATGGGCCTGACCTTAATGCAAGGGTTGCAGATTACTGCCTTCACCGCCTCATGACTCAAGCCGGCACAATAGAACAGATTCTTGATGCAGGAGTTTTGGGTTATCGTGCCCCTGAGTTGGCTGCATCAAAGAAACCACTGCCTTCCTTCAAATCAGATGTATATGCTTTTGGAGTTATTTTGTTGGAGCTGCTTAGTGGAAAATGTGCAGGTGATGTTGTCTCTGGCGAAGATGGCGGAGTAGACTTGACTGACTGGGTAAGGTTGAAGGTGGCAGAAGGTCGTAGCTCTGATTGTTTTGATAACGTTTTGTCACCTGAGTTGGAAAATCCAGCAATGGAGAAGCAAATGAAGGAGGTTCTTGGTATAGCTGTGCGATGCATTCGTTCTATATCTGAGAGACCTGGTATCAAGACTATATATGAGGACCTTTCGTCTATATAGTTTGTACTCATCTGGTTTTGCTCTACTTTGGGAATCAAATAGCTCATTGACTTCCCTTTTGAGTAGTAGGATTAGCACAGTTAGTGTGTGAATGGGGCTAGTTTTATTGACCATTGTTTGTTGTAAATTGGGGCATATTTAATGTGTAAACAATCTTTTCTCCCCGTTTGGCTTATGAGCTTCCAATGTTTGTCAATTTTTTGGAGTAAATACTTGTGACTTTATTTTCAAAGTTTTGCAGCACATTTTCACAGAACATTTACAGAT</gDNA_template>
            <first_frame> V  S  G  S  S  G  W  R  A  V  L  P  *  *  Y  N  L  F  Y  T  *  G  T  F  Q  G  S  G  *  S  L  R  Q  K  Q  P  W  Y  I  I  Q  G  N  T  G  E  W  V  A  S  D  C  E  M  V  E  R  R  S  G  E  A  E  E  G  F  C  E  G  G  *  R  V  Y  *  Y  *  A  S  *  C  S  R  I  K  R  L  L  L  G  S  H  T  T  *  E  A  H  S  F  G  L  Y  I  S  W  K  S  C  K  F  P  L  * :   S  A  W  *  K  R  S  T  T  N  L  A  P  K  T  Q  N  I  S  *  C  C  T  W  L  E  L  S  P  F  *  S  G  G  S  T  W  K  S  *  S  N  Q  H  L  V  G  W  A  *  P  *  C  K  G  C  R  L  L  P  S  P  P  H  D  S  S  R  H  N  R  T  D  S  *  C  R  S  F  G  L  S  C  P  *  V  G  C  I  K  E  T  T  A  F  L  Q  I  R  C  I  C  F  W  S  Y  F  V  G  A  A  *  W  K  M  C  R  *  C  C  L  W  R  R  W  R  S  R  L  D  *  L  G  K  V  E  G  G  R  R  S  *  L  *  L  F  *  *  R  F  V  T  *  V  G  K  S  S  N  G  E  A  N  E  G  G  S  W  Y  S  C  A  M  H  S  F  Y  I  *  E  T  W  Y  Q  D  Y  I  *  G  P  F  V  Y  I  V  C  T  H  L  V  L  L  Y  F  G  N  Q  I  A  H  *  L  P  F  *  V  V  G  L  A  Q  L  V  C  E  W  G  *  F  Y  *  P  L  F  V  V  N  W  G  I  F  N  V  *  T  I  F  S  P  R  L  A  Y  E  L  P  M  F  V  N  F  L  E  *  I  L  V  T  L  F  S  K  F  C  S  T  F  S  Q  N  I  Y  R  </first_frame>
            <second_frame>  S  P  D  R  L  A  G  E  L  Y  F  L  D  D  T  I  S  F  T  P  E  E  L  S  R  A  P  A  E  V  L  G  R  S  S  H  G  T  S  Y  R  A  T  L  E  N  G  L  L  L  T  V  K  W  L  R  E  G  V  A  K  Q  R  K  D  F  A  K  E  A  K  E  F  T  N  I  R  H  P  N  V  V  G  L  R  G  Y  Y  W  G  P  T  Q  H  E  K  L  I  L  S  D  Y  I  S  P  G  S  L  A  S  F  L  Y   : D  R  P  G  R  K  G  P  P  L  T  W  P  Q  R  L  K  I  S  V  D  V  A  R  G  L  N  Y  L  H  F  D  R  E  V  P  H  G  N  L  K  A  T  N  I  L  L  D  G  P  D  L  N  A  R  V  A  D  Y  C  L  H  R  L  M  T  Q  A  G  T  I  E  Q  I  L  D  A  G  V  L  G  Y  R  A  P  E  L  A  A  S  K  K  P  L  P  S  F  K  S  D  V  Y  A  F  G  V  I  L  L  E  L  L  S  G  K  C  A  G  D  V  V  S  G  E  D  G  G  V  D  L  T  D  W  V  R  L  K  V  A  E  G  R  S  S  D  C  F  D  N  V  L  S  P  E  L  E  N  P  A  M  E  K  Q  M  K  E  V  L  G  I  A  V  R  C  I  R  S  I  S  E  R  P  G  I  K  T  I  Y  E  D  L  S  S  I  *  F  V  L  I  W  F  C  S  T  L  G  I  K  *  L  I  D  F  P  F  E  *  *  D  *  H  S  *  C  V  N  G  A  S  F  I  D  H  C  L  L  *  I  G  A  Y  L  M  C  K  Q  S  F  L  P  V  W  L  M  S  F  Q  C  L  S  I  F  W  S  K  Y  L  *  L  Y  F  Q  S  F  A  A  H  F  H  R  T  F  T  D </second_frame>
            <third_frame>   L  R  I  V  W  L  E  S  C  T  S  L  M  I  Q  S  L  L  H  L  R  N  F  P  G  L  R  L  K  S  *  A  E  A  A  M  V  H  H  T  G  Q  H  W  R  M  G  C  F  *  L  *  N  G  *  E  K  E  W  R  S  R  G  R  I  L  R  R  R  L  K  S  L  L  I  L  G  I  L  M  *  *  D  *  E  V  T  T  G  V  P  H  N  M  R  S  S  F  F  R  I  I  Y  L  L  E  V  L  Q  V  S  S  M  :  I  G  L  V  E  K  V  H  H  *  P  G  P  K  D  S  K  Y  Q  L  M  L  H  V  A  *  T  I  S  I  L  I  G  R  F  H  M  E  I  L  K  Q  P  T  S  C  W  M  G  L  T  L  M  Q  G  L  Q  I  T  A  F  T  A  S  *  L  K  P  A  Q  *  N  R  F  L  M  Q  E  F  W  V  I  V  P  L  S  W  L  H  Q  R  N  H  C  L  P  S  N  Q  M  Y  M  L  L  E  L  F  C  W  S  C  L  V  E  N  V  Q  V  M  L  S  L  A  K  M  A  E  *  T  *  L  T  G  *  G  *  R  W  Q  K  V  V  A  L  I  V  L  I  T  F  C  H  L  S  W  K  I  Q  Q  W  R  S  K  *  R  R  F  L  V  *  L  C  D  A  F  V  L  Y  L  R  D  L  V  S  R  L  Y  M  R  T  F  R  L  Y  S  L  Y  S  S  G  F  A  L  L  W  E  S  N  S  S  L  T  S  L  L  S  S  R  I  S  T  V  S  V  *  M  G  L  V  L  L  T  I  V  C  C  K  L  G  H  I  *  C  V  N  N  L  F  S  P  F  G  L  *  A  S  N  V  C  Q  F  F  G  V  N  T  C  D  F  I  F  K  V  L  Q  H  I  F  T  E  H  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98478" stop="98817"/>
                    <exon start="99438" stop="100021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDRLAGELYFLDDTISFTPEELSRAPAEVLGRSSHGTSYRATLENGLLLTVKWLREGVAKQRKDFAKEAKEFTNIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWPQRLKISVDVARGLNYLHFDREVPHGNLKATNILLDGPDLNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPLPSFKSDVYAFGVILLELLSGKCAGDVVSGEDGGVDLTDWVRLKVAEGRSSDCFDNVLSPELENPAMEKQMKEVLGIAVRCIRSISERPGIKTIYEDLSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="105290" PGL_stop="103304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105290" e_stop="103304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="105290" e_stop="103304" e_length="1987"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105290" stop="104531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105142" stop="104288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105136" stop="104294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105061" stop="104575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="104267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="104575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="104676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="104325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="104498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="104549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105039" stop="104574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104966" stop="104061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104802" stop="104330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104656" stop="103875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104333" stop="103570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104175" stop="103449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103924" stop="103304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAACATTTATTTCATTCCACGTTTGTATTAGGGTCTTATTAAATACTTTTTTTAATTTATTCTGTGTTTGTATTAGGATCTCACTAAATTTAAATTCATATGATAAAATTACACATTAAGATCACTTCATATTCAGAATCGAATATGAGATCTTTGGTTTAAGAACGAAGAAATACTTATAAATTAACAGGTTATTTGTTCGTTCAATAGTCCTAACTTCCTTCGATGGAGAATGAAAAAGATAAACTTCATGTTGTGATGTTTCCATGGCTAGCCATGGGACATATCATACCTTTTTTTCATCTATCAAAGTGTTTAGCACGAAGGGGCCATAGAGTCACCTTCATTTCAACTCCAAGAAACATTGAAAGAGTCGTCAATAAAGTTCCCTCTGATCTTGCTCATCTGTTGCATATTGTGTGGTTTCAATTGCCTAAAGTTGAAAACTTGCCGGATGATGCAGAGTCATCGATGGATATTCCTTACCAAAAAGCTCAGTTCTTGAAGATAGCTTTCGATTCGCTCGAAATCCCACTGACCAATTATCTTGAGAGTTCATCAAATCCCAAACCAGATTGGATTGTCTATGACTATGCTTCTCACTGGCTACCTCAAATTGCAGGTAAATTAGGCGTTTCTCGCGCCTTTTTTAGTCTGTTTACTGCTGCAACCATGTCATTTTATGGACCTCCTTGTGCTTTGTTAAATGATGAAAGGTCAATAGCTGAGGACTATACAGTTGTTCCAAAATGGATTCCTTTCGAAACGAAAGTTGTGTATAGGCTGCATGAGATTAAGAAGAATTTCGAAGCACCAGCTGATGAATCAGGTACATCTGATGGAGCCAGATTTGGTGCTTCAATTGATGCAAGTGATGTCATATTGTTTCGAAATTGTGTTGAGTTTGAATCCGAATGGTTCAGCTTGGTTTCTGAGCTTTATCAGAAACCTATTATATCCATTGGTGTGCTACCTCCATCTGTTGTAGTTGATCAAGAACAAGATGACAGCAATGATGCGTCGTGGTCAGGAATCAAGAGTTGGCTAGATAAGCACAATCAAGATTCTGTTGTTTATGTTGCACTTGGAACTGAAGCAACACTGAATCAACAAGAGCTGAATGAGCTAGCTTTGGGGTTAGAAAAATGCGGATTACCATTCGTTTGGGTATTAAGAGATCAGCCAAAACATAATCAACAAGATTCGTGTATTCAGCTGCCTGATGGATACGAAGACAGAGTCAAAAACAGAGGTGTAATATACAAAGGATGGGTACCACAGACGAAGATACTGAGTCATTCGTCAGTAGGTGGATTCTTGACTCATTGTGGATGGAATTCGGTCATAGAAGCGCTATGTTTTGGGCGGGTTTTGGTTATGTTCCCGGTGTTGAATGATCAAGGATTGAATACAAGGTTGTTGCAAGAGAAAGGAGTTGGTGTAGAGATACCAAGAAATGAAAAAGATGGATTTTTCACTAGTGATTCAGTGGCTGAAGCTGTGAAGTTTGGTGTAGTGAGTGAAGAGGGTGAGTTGTTGAGAGCTAATGCAAGACAAATGAGTTGTTTGTTTGGAGATAGGAAGAGAAATGAACAACTTATTGATGATTGTGTTGGTTATTTCATGGAAAATAGGATAAGCAAATCTAATAGCTCCATCGGTTGACTATCTAACTTTTTACCTGAGTTCGATTCTCATCTTCTATTTCCCCAAAAAAGGAGTTAAGAAAGTAGTCGTTGCAATCGAGTTTCTTACTTTTTTTACACCTTGTTTGGATGATTGTTACCTGTTTTATTGTATTGTATTGTTAGTTTAAATATAATGTTTGTTTCAACTGTTATTTATATTCTATTATATGGTATCGTTCAAATCTATCGTTGTTATACTCATTTTATGTAACGATTTGGTGTGATTGTGTTGTTACCTTGATAATTTCTTTTCATTTTGTCTTTATTTATTATTTAATAATCATATTTCATCTTTT</gDNA_template>
            <first_frame> F  *  H  L  F  H  S  T  F  V  L  G  S  Y  *  I  L  F  L  I  Y  S  V  F  V  L  G  S  H  *  I  *  I  H  M  I  K  L  H  I  K  I  T  S  Y  S  E  S  N  M  R  S  L  V  *  E  R  R  N  T  Y  K  L  T  G  Y  L  F  V  Q  *  S  *  L  P  S  M  E  N  E  K  D  K  L  H  V  V  M  F  P  W  L  A  M  G  H  I  I  P  F  F  H  L  S  K  C  L  A  R  R  G  H  R  V  T  F  I  S  T  P  R  N  I  E  R  V  V  N  K  V  P  S  D  L  A  H  L  L  H  I  V  W  F  Q  L  P  K  V  E  N  L  P  D  D  A  E  S  S  M  D  I  P  Y  Q  K  A  Q  F  L  K  I  A  F  D  S  L  E  I  P  L  T  N  Y  L  E  S  S  S  N  P  K  P  D  W  I  V  Y  D  Y  A  S  H  W  L  P  Q  I  A  G  K  L  G  V  S  R  A  F  F  S  L  F  T  A  A  T  M  S  F  Y  G  P  P  C  A  L  L  N  D  E  R  S  I  A  E  D  Y  T  V  V  P  K  W  I  P  F  E  T  K  V  V  Y  R  L  H  E  I  K  K  N  F  E  A  P  A  D  E  S  G  T  S  D  G  A  R  F  G  A  S  I  D  A  S  D  V  I  L  F  R  N  C  V  E  F  E  S  E  W  F  S  L  V  S  E  L  Y  Q  K  P  I  I  S  I  G  V  L  P  P  S  V  V  V  D  Q  E  Q  D  D  S  N  D  A  S  W  S  G  I  K  S  W  L  D  K  H  N  Q  D  S  V  V  Y  V  A  L  G  T  E  A  T  L  N  Q  Q  E  L  N  E  L  A  L  G  L  E  K  C  G  L  P  F  V  W  V  L  R  D  Q  P  K  H  N  Q  Q  D  S  C  I  Q  L  P  D  G  Y  E  D  R  V  K  N  R  G  V  I  Y  K  G  W  V  P  Q  T  K  I  L  S  H  S  S  V  G  G  F  L  T  H  C  G  W  N  S  V  I  E  A  L  C  F  G  R  V  L  V  M  F  P  V  L  N  D  Q  G  L  N  T  R  L  L  Q  E  K  G  V  G  V  E  I  P  R  N  E  K  D  G  F  F  T  S  D  S  V  A  E  A  V  K  F  G  V  V  S  E  E  G  E  L  L  R  A  N  A  R  Q  M  S  C  L  F  G  D  R  K  R  N  E  Q  L  I  D  D  C  V  G  Y  F  M  E  N  R  I  S  K  S  N  S  S  I  G  *  L  S  N  F  L  P  E  F  D  S  H  L  L  F  P  Q  K  R  S  *  E  S  S  R  C  N  R  V  S  Y  F  F  Y  T  L  F  G  *  L  L  P  V  L  L  Y  C  I  V  S  L  N  I  M  F  V  S  T  V  I  Y  I  L  L  Y  G  I  V  Q  I  Y  R  C  Y  T  H  F  M  *  R  F  G  V  I  V  L  L  P  *  *  F  L  F  I  L  S  L  F  I  I  *  *  S  Y  F  I  F  </first_frame>
            <second_frame>  F  N  I  Y  F  I  P  R  L  Y  *  G  L  I  K  Y  F  F  *  F  I  L  C  L  Y  *  D  L  T  K  F  K  F  I  *  *  N  Y  T  L  R  S  L  H  I  Q  N  R  I  *  D  L  W  F  K  N  E  E  I  L  I  N  *  Q  V  I  C  S  F  N  S  P  N  F  L  R  W  R  M  K  K  I  N  F  M  L  *  C  F  H  G  *  P  W  D  I  S  Y  L  F  F  I  Y  Q  S  V  *  H  E  G  A  I  E  S  P  S  F  Q  L  Q  E  T  L  K  E  S  S  I  K  F  P  L  I  L  L  I  C  C  I  L  C  G  F  N  C  L  K  L  K  T  C  R  M  M  Q  S  H  R  W  I  F  L  T  K  K  L  S  S  *  R  *  L  S  I  R  S  K  S  H  *  P  I  I  L  R  V  H  Q  I  P  N  Q  I  G  L  S  M  T  M  L  L  T  G  Y  L  K  L  Q  V  N  *  A  F  L  A  P  F  L  V  C  L  L  L  Q  P  C  H  F  M  D  L  L  V  L  C  *  M  M  K  G  Q  *  L  R  T  I  Q  L  F  Q  N  G  F  L  S  K  R  K  L  C  I  G  C  M  R  L  R  R  I  S  K  H  Q  L  M  N  Q  V  H  L  M  E  P  D  L  V  L  Q  L  M  Q  V  M  S  Y  C  F  E  I  V  L  S  L  N  P  N  G  S  A  W  F  L  S  F  I  R  N  L  L  Y  P  L  V  C  Y  L  H  L  L  *  L  I  K  N  K  M  T  A  M  M  R  R  G  Q  E  S  R  V  G  *  I  S  T  I  K  I  L  L  F  M  L  H  L  E  L  K  Q  H  *  I  N  K  S  *  M  S  *  L  W  G  *  K  N  A  D  Y  H  S  F  G  Y  *  E  I  S  Q  N  I  I  N  K  I  R  V  F  S  C  L  M  D  T  K  T  E  S  K  T  E  V  *  Y  T  K  D  G  Y  H  R  R  R  Y  *  V  I  R  Q  *  V  D  S  *  L  I  V  D  G  I  R  S  *  K  R  Y  V  L  G  G  F  W  L  C  S  R  C  *  M  I  K  D  *  I  Q  G  C  C  K  R  K  E  L  V  *  R  Y  Q  E  M  K  K  M  D  F  S  L  V  I  Q  W  L  K  L  *  S  L  V  *  *  V  K  R  V  S  C  *  E  L  M  Q  D  K  *  V  V  C  L  E  I  G  R  E  M  N  N  L  L  M  I  V  L  V  I  S  W  K  I  G  *  A  N  L  I  A  P  S  V  D  Y  L  T  F  Y  L  S  S  I  L  I  F  Y  F  P  K  K  G  V  K  K  V  V  V  A  I  E  F  L  T  F  F  T  P  C  L  D  D  C  Y  L  F  Y  C  I  V  L  L  V  *  I  *  C  L  F  Q  L  L  F  I  F  Y  Y  M  V  S  F  K  S  I  V  V  I  L  I  L  C  N  D  L  V  *  L  C  C  Y  L  D  N  F  F  S  F  C  L  Y  L  L  F  N  N  H  I  S  S  F </second_frame>
            <third_frame>   L  T  F  I  S  F  H  V  C  I  R  V  L  L  N  T  F  F  N  L  F  C  V  C  I  R  I  S  L  N  L  N  S  Y  D  K  I  T  H  *  D  H  F  I  F  R  I  E  Y  E  I  F  G  L  R  T  K  K  Y  L  *  I  N  R  L  F  V  R  S  I  V  L  T  S  F  D  G  E  *  K  R  *  T  S  C  C  D  V  S  M  A  S  H  G  T  Y  H  T  F  F  S  S  I  K  V  F  S  T  K  G  P  *  S  H  L  H  F  N  S  K  K  H  *  K  S  R  Q  *  S  S  L  *  S  C  S  S  V  A  Y  C  V  V  S  I  A  *  S  *  K  L  A  G  *  C  R  V  I  D  G  Y  S  L  P  K  S  S  V  L  E  D  S  F  R  F  A  R  N  P  T  D  Q  L  S  *  E  F  I  K  S  Q  T  R  L  D  C  L  *  L  C  F  S  L  A  T  S  N  C  R  *  I  R  R  F  S  R  L  F  *  S  V  Y  C  C  N  H  V  I  L  W  T  S  L  C  F  V  K  *  *  K  V  N  S  *  G  L  Y  S  C  S  K  M  D  S  F  R  N  E  S  C  V  *  A  A  *  D  *  E  E  F  R  S  T  S  *  *  I  R  Y  I  *  W  S  Q  I  W  C  F  N  *  C  K  *  C  H  I  V  S  K  L  C  *  V  *  I  R  M  V  Q  L  G  F  *  A  L  S  E  T  Y  Y  I  H  W  C  A  T  S  I  C  C  S  *  S  R  T  R  *  Q  Q  *  C  V  V  V  R  N  Q  E  L  A  R  *  A  Q  S  R  F  C  C  L  C  C  T  W  N  *  S  N  T  E  S  T  R  A  E  *  A  S  F  G  V  R  K  M  R  I  T  I  R  L  G  I  K  R  S  A  K  T  *  S  T  R  F  V  Y  S  A  A  *  W  I  R  R  Q  S  Q  K  Q  R  C  N  I  Q  R  M  G  T  T  D  E  D  T  E  S  F  V  S  R  W  I  L  D  S  L  W  M  E  F  G  H  R  S  A  M  F  W  A  G  F  G  Y  V  P  G  V  E  *  S  R  I  E  Y  K  V  V  A  R  E  R  S  W  C  R  D  T  K  K  *  K  R  W  I  F  H  *  *  F  S  G  *  S  C  E  V  W  C  S  E  *  R  G  *  V  V  E  S  *  C  K  T  N  E  L  F  V  W  R  *  E  E  K  *  T  T  Y  *  *  L  C  W  L  F  H  G  K  *  D  K  Q  I  *  *  L  H  R  L  T  I  *  L  F  T  *  V  R  F  S  S  S  I  S  P  K  K  E  L  R  K  *  S  L  Q  S  S  F  L  L  F  L  H  L  V  W  M  I  V  T  C  F  I  V  L  Y  C  *  F  K  Y  N  V  C  F  N  C  Y  L  Y  S  I  I  W  Y  R  S  N  L  S  L  L  Y  S  F  Y  V  T  I  W  C  D  C  V  V  T  L  I  I  S  F  H  F  V  F  I  Y  Y  L  I  I  I  F  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105071" stop="103623"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSMENEKDKLHVVMFPWLAMGHIIPFFHLSKCLARRGHRVTFISTPRNIERVVNKVPSDLAHLLHIVWFQLPKVENLPDDAESSMDIPYQKAQFLKIAFDSLEIPLTNYLESSSNPKPDWIVYDYASHWLPQIAGKLGVSRAFFSLFTAATMSFYGPPCALLNDERSIAEDYTVVPKWIPFETKVVYRLHEIKKNFEAPADESGTSDGARFGASIDASDVILFRNCVEFESEWFSLVSELYQKPIISIGVLPPSVVVDQEQDDSNDASWSGIKSWLDKHNQDSVVYVALGTEATLNQQELNELALGLEKCGLPFVWVLRDQPKHNQQDSCIQLPDGYEDRVKNRGVIYKGWVPQTKILSHSSVGGFLTHCGWNSVIEALCFGRVLVMFPVLNDQGLNTRLLQEKGVGVEIPRNEKDGFFTSDSVAEAVKFGVVSEEGELLRANARQMSCLFGDRKRNEQLIDDCVGYFMENRISKSNSSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="104081" PGL_stop="104737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104081" e_stop="104737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="104081" e_stop="104737" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104081" stop="104737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAATCTTGTTGATTATGTTTTGGCTGATCTCTTAATACCCAAACGAATGGTAATCCGCATTTTTCTAACCCCAAAGCTAGCTCATTCAGCTCTTGTTGATTCAGTGTTGCTTCAGTTCCAAGTGCAACATAAACAACAGAATCTTGATTGTGCTTATCTAGCCAACTCTTGATTCCTGACCACGACGCATCATTGCTGTCATCTTGTTCTTGATCAACTACAACAGATGGAGGTAGCACACCAATGGATATAATAGGTTTCTGATAAAGCTCAGAAACCAAGCTGAACCATTCGGATTCAAACTCAACACAATTTCGAAACAATATGACATCACTTGCATCAATTGAAGCACCAAATCTGGCTCCATCAGATGTACCTGATTCATCAGCTGGTGCTTCGAAATTCTTCTTAATCTCATGCAGCCTATACACAACTTTCGTTTCGAAAGGAATCCATTTTGGAACAACTGTATAGTCCTCAGCTATTGACCTTTCATCATTTAACAAAGCACAAGGAGGTCCATAAAATGACATGGTTGCAGCAGTAAACAGACTAAAAAAGGCGCGAGAAACGCCTAATTTACCTGCAATTTGAGGTAGCCAGTGAGAAGCATAGTCATAGACAATCCAATCTGGTTTGGGATTTGATGAACTCT</gDNA_template>
            <first_frame> T  N  L  V  D  Y  V  L  A  D  L  L  I  P  K  R  M  V  I  R  I  F  L  T  P  K  L  A  H  S  A  L  V  D  S  V  L  L  Q  F  Q  V  Q  H  K  Q  Q  N  L  D  C  A  Y  L  A  N  S  *  F  L  T  T  T  H  H  C  C  H  L  V  L  D  Q  L  Q  Q  M  E  V  A  H  Q  W  I  *  *  V  S  D  K  A  Q  K  P  S  *  T  I  R  I  Q  T  Q  H  N  F  E  T  I  *  H  H  L  H  Q  L  K  H  Q  I  W  L  H  Q  M  Y  L  I  H  Q  L  V  L  R  N  S  S  *  S  H  A  A  Y  T  Q  L  S  F  R  K  E  S  I  L  E  Q  L  Y  S  P  Q  L  L  T  F  H  H  L  T  K  H  K  E  V  H  K  M  T  W  L  Q  Q  *  T  D  *  K  R  R  E  K  R  L  I  Y  L  Q  F  E  V  A  S  E  K  H  S  H  R  Q  S  N  L  V  W  D  L  M  N  S </first_frame>
            <second_frame>  R  I  L  L  I  M  F  W  L  I  S  *  Y  P  N  E  W  *  S  A  F  F  *  P  Q  S  *  L  I  Q  L  L  L  I  Q  C  C  F  S  S  K  C  N  I  N  N  R  I  L  I  V  L  I  *  P  T  L  D  S  *  P  R  R  I  I  A  V  I  L  F  L  I  N  Y  N  R  W  R  *  H  T  N  G  Y  N  R  F  L  I  K  L  R  N  Q  A  E  P  F  G  F  K  L  N  T  I  S  K  Q  Y  D  I  T  C  I  N  *  S  T  K  S  G  S  I  R  C  T  *  F  I  S  W  C  F  E  I  L  L  N  L  M  Q  P  I  H  N  F  R  F  E  R  N  P  F  W  N  N  C  I  V  L  S  Y  *  P  F  I  I  *  Q  S  T  R  R  S  I  K  *  H  G  C  S  S  K  Q  T  K  K  G  A  R  N  A  *  F  T  C  N  L  R  *  P  V  R  S  I  V  I  D  N  P  I  W  F  G  I  *  *  T   </second_frame>
            <third_frame>   E  S  C  *  L  C  F  G  *  S  L  N  T  Q  T  N  G  N  P  H  F  S  N  P  K  A  S  S  F  S  S  C  *  F  S  V  A  S  V  P  S  A  T  *  T  T  E  S  *  L  C  L  S  S  Q  L  L  I  P  D  H  D  A  S  L  L  S  S  C  S  *  S  T  T  T  D  G  G  S  T  P  M  D  I  I  G  F  *  *  S  S  E  T  K  L  N  H  S  D  S  N  S  T  Q  F  R  N  N  M  T  S  L  A  S  I  E  A  P  N  L  A  P  S  D  V  P  D  S  S  A  G  A  S  K  F  F  L  I  S  C  S  L  Y  T  T  F  V  S  K  G  I  H  F  G  T  T  V  *  S  S  A  I  D  L  S  S  F  N  K  A  Q  G  G  P  *  N  D  M  V  A  A  V  N  R  L  K  K  A  R  E  T  P  N  L  P  A  I  *  G  S  Q  *  E  A  *  S  *  T  I  Q  S  G  L  G  F  D  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104350" stop="104556"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSETKLNHSDSNSTQFRNNMTSLASIEAPNLAPSDVPDSSAGASKFFLISCSLYTTFVSKGIHFGTTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="113155" PGL_stop="110266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113155" e_stop="113121"/>
            <exon e_start="112049" e_stop="111912"/>
            <exon e_start="110944" e_stop="110421"/>
            <exon e_start="110309" e_stop="110266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="0.971"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.750" e_score="0.914"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="113155" e_stop="113121" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="113120" i_stop="112050" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112049" e_stop="111912" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111911" i_stop="110945" i_length="967"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="110944" e_stop="110421" e_length="524"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="110420" i_stop="110310" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.909">
            <gDNA_exon_boundary e_start="110309" e_stop="110266" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113155" stop="113121"/>
              <exon start="112049" stop="111912"/>
              <exon start="110944" stop="110421"/>
              <exon start="110309" stop="110266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113155" stop="113121"/>
              <exon start="112049" stop="111912"/>
              <exon start="110944" stop="110421"/>
              <exon start="110309" stop="110266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTCACAGAGAGCTCTTGCTCGTGCTGCAAAG : ATACTTCATTCAAAACTCAATGGAAATATAGAAGCTGAACAACCAATCAACAGTATCAAGTCTGCAATACTATATGATGGTTCGATTTTGTCTTGTGATTCTCGGTTGTGTGGATATGATATTGCAACCTGCTTGGAG : GTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGA : AGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</gDNA_template>
            <first_frame> I  F  H  R  E  L  L  L  V  L  Q  R :   Y  F  I  Q  N  S  M  E  I  *  K  L  N  N  Q  S  T  V  S  S  L  Q  Y  Y  M  M  V  R  F  C  L  V  I  L  G  C  V  D  M  I  L  Q  P  A  W  R :   *  L  N  T  W  R  N  R  T  H  V  C  L  G  I  L  F  S  V  H  F  V  H  R  F  L  *  S  P  L  P  I  M  N  T  M  *  F  S  R  N  L  L  P  N  T  R  R  M  T  Q  M  R  R  A  S  S  S  Y  A  N  S  A  I  T  I  T  S  L  S  G  L  D  S  S  S  V  N  G  H  L  S  *  L  *  G  I  I  M  M  S  C  S  V  V  L  G  E  K  L  T  K  N  Q  D  L  P  P  K  L  L  F  L  E  E  T  I  A  V  P  *  M  Q  I  F  L  N  T  M  M  L  Y  G  N  G  V  V  T  I  N  S  *  *  F  *  Q  Q  F  I  L  V  S  D  V  D  S  R  S  Y  R  N  F  V  I  L  T  *  I  C  L  K  L  *  *   : K  I  W  Y  V  V  R  S  Y  S  *  L  Q  T  D </first_frame>
            <second_frame>  Y  F  T  E  S  S  C  S  C  C  K   : D  T  S  F  K  T  Q  W  K  Y  R  S  *  T  T  N  Q  Q  Y  Q  V  C  N  T  I  *  W  F  D  F  V  L  *  F  S  V  V  W  I  *  Y  C  N  L  L  G   : G  D  *  T  H  G  G  T  G  R  M  F  V  W  G  Y  C  S  P  F  I  L  S  T  D  S  Y  S  L  H  S  Q  L  *  I  Q  C  D  S  P  E  I  Y  S  P  I  P  G  G  *  P  R  *  E  E  P  A  A  V  M  Q  I  P  Q  S  R  S  Q  V  *  V  D  *  T  A  V  L  *  M  G  I  *  A  S  F  K  A  *  L  *  C  R  V  Q  W  C  W  G  R  S  *  Q  R  T  R  I  C  L  P  N  C  C  F  *  K  K  R  S  Q  S  R  E  C  R  F  S  *  T  L  *  C  Y  M  G  M  E  *  *  Q  *  I  V  D  D  F  N  N  S  S  F  W  L  V  M  W  T  P  E  A  I  G  I  L  *  S  L  P  K  Y  A  *  N  C  S  R  :  R  Y  G  M  L  *  G  H  T  H  S  Y  R  Q   </second_frame>
            <third_frame>   I  S  Q  R  A  L  A  R  A  A  K  :  I  L  H  S  K  L  N  G  N  I  E  A  E  Q  P  I  N  S  I  K  S  A  I  L  Y  D  G  S  I  L  S  C  D  S  R  L  C  G  Y  D  I  A  T  C  L  E  :  V  I  E  H  M  E  E  Q  D  A  C  L  F  G  D  I  V  L  R  S  F  C  P  Q  I  L  I  V  S  T  P  N  Y  E  Y  N  V  I  L  Q  K  S  T  P  Q  Y  Q  E  D  D  P  D  E  K  S  Q  Q  Q  L  C  K  F  R  N  H  D  H  K  F  E  W  T  R  Q  Q  F  C  E  W  A  S  E  L  A  L  R  H  N  Y  D  V  V  F  S  G  V  G  G  E  A  N  K  E  P  G  F  A  S  Q  I  A  V  F  R  R  N  D  R  S  P  V  N  A  D  F  P  E  H  Y  D  V  I  W  E  W  S  S  D  N  K  *  L  M  I  L  T  T  V  H  F  G  *  *  C  G  L  Q  K  L  *  E  F  C  N  P  Y  L  N  M  L  E  I  V  V  E :   D  M  V  C  C  E  V  I  L  I  V  T  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113153" stop="113121"/>
                    <exon start="112049" stop="111912"/>
                    <exon start="110944" stop="110522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQRALARAAKILHSKLNGNIEAEQPINSIKSAILYDGSILSCDSRLCGYDIATCLEVIEHMEEQDACLFGDIVLRSFCPQILIVSTPNYEYNVILQKSTPQYQEDDPDEKSQQQLCKFRNHDHKFEWTRQQFCEWASELALRHNYDVVFSGVGGEANKEPGFASQIAVFRRNDRSPVNADFPEHYDVIWEWSSDNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111109" e_stop="111106"/>
            <exon e_start="110944" e_stop="110421"/>
            <exon e_start="110309" e_stop="110266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.750" e_score="0.910"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111109" e_stop="111106" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111105" i_stop="110945" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="110944" e_stop="110421" e_length="524"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="110420" i_stop="110310" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="110309" e_stop="110266" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111109" stop="111106"/>
              <exon start="110944" stop="110421"/>
              <exon start="110309" stop="110266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAG : GTGATTGAACACATGGAGGAACAGGACGCATGTTTGTTTGGGGATATTGTTCTCCGTTCATTTTGTCCACAGATTCTTATAGTCTCCACTCCCAATTATGAATACAATGTGATTCTCCAGAAATCTACTCCCCAATACCAGGAGGATGACCCAGATGAGAAGAGCCAGCAGCAGTTATGCAAATTCCGCAATCACGATCACAAGTTTGAGTGGACTAGACAGCAGTTCTGTGAATGGGCATCTGAGCTAGCTTTAAGGCATAATTATGATGTCGTGTTCAGTGGTGTTGGGGGAGAAGCTAACAAAGAACCAGGATTTGCCTCCCAAATTGCTGTTTTTAGAAGAAACGATCGCAGTCCCGTGAATGCAGATTTTCCTGAACACTATGATGTTATATGGGAATGGAGTAGTGACAATAAATAGTTGATGATTTTAACAACAGTTCATTTTGGTTAGTGATGTGGACTCCAGAAGCTATAGGAATTTTGTAATCCTTACCTAAATATGCTTGAAATTGTAGTAGA : AGATATGGTATGTTGTGAGGTCATACTCATAGTTACAGACAGAC</gDNA_template>
            <first_frame> G   : G  D  *  T  H  G  G  T  G  R  M  F  V  W  G  Y  C  S  P  F  I  L  S  T  D  S  Y  S  L  H  S  Q  L  *  I  Q  C  D  S  P  E  I  Y  S  P  I  P  G  G  *  P  R  *  E  E  P  A  A  V  M  Q  I  P  Q  S  R  S  Q  V  *  V  D  *  T  A  V  L  *  M  G  I  *  A  S  F  K  A  *  L  *  C  R  V  Q  W  C  W  G  R  S  *  Q  R  T  R  I  C  L  P  N  C  C  F  *  K  K  R  S  Q  S  R  E  C  R  F  S  *  T  L  *  C  Y  M  G  M  E  *  *  Q  *  I  V  D  D  F  N  N  S  S  F  W  L  V  M  W  T  P  E  A  I  G  I  L  *  S  L  P  K  Y  A  *  N  C  S  R  :  R  Y  G  M  L  *  G  H  T  H  S  Y  R  Q   </first_frame>
            <second_frame>  E  :  V  I  E  H  M  E  E  Q  D  A  C  L  F  G  D  I  V  L  R  S  F  C  P  Q  I  L  I  V  S  T  P  N  Y  E  Y  N  V  I  L  Q  K  S  T  P  Q  Y  Q  E  D  D  P  D  E  K  S  Q  Q  Q  L  C  K  F  R  N  H  D  H  K  F  E  W  T  R  Q  Q  F  C  E  W  A  S  E  L  A  L  R  H  N  Y  D  V  V  F  S  G  V  G  G  E  A  N  K  E  P  G  F  A  S  Q  I  A  V  F  R  R  N  D  R  S  P  V  N  A  D  F  P  E  H  Y  D  V  I  W  E  W  S  S  D  N  K  *  L  M  I  L  T  T  V  H  F  G  *  *  C  G  L  Q  K  L  *  E  F  C  N  P  Y  L  N  M  L  E  I  V  V  E :   D  M  V  C  C  E  V  I  L  I  V  T  D  R  </second_frame>
            <third_frame>   R :   *  L  N  T  W  R  N  R  T  H  V  C  L  G  I  L  F  S  V  H  F  V  H  R  F  L  *  S  P  L  P  I  M  N  T  M  *  F  S  R  N  L  L  P  N  T  R  R  M  T  Q  M  R  R  A  S  S  S  Y  A  N  S  A  I  T  I  T  S  L  S  G  L  D  S  S  S  V  N  G  H  L  S  *  L  *  G  I  I  M  M  S  C  S  V  V  L  G  E  K  L  T  K  N  Q  D  L  P  P  K  L  L  F  L  E  E  T  I  A  V  P  *  M  Q  I  F  L  N  T  M  M  L  Y  G  N  G  V  V  T  I  N  S  *  *  F  *  Q  Q  F  I  L  V  S  D  V  D  S  R  S  Y  R  N  F  V  I  L  T  *  I  C  L  K  L  *  *   : K  I  W  Y  V  V  R  S  Y  S  *  L  Q  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111108" stop="111106"/>
                    <exon start="110944" stop="110522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVIEHMEEQDACLFGDIVLRSFCPQILIVSTPNYEYNVILQKSTPQYQEDDPDEKSQQQLCKFRNHDHKFEWTRQQFCEWASELALRHNYDVVFSGVGGEANKEPGFASQIAVFRRNDRSPVNADFPEHYDVIWEWSSDNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="114237" PGL_stop="113323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114237" e_stop="113638"/>
            <exon e_start="113465" e_stop="113323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.653" e_score="0.992"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="114237" e_stop="113638" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.653">
            <gDNA_intron_boundary i_start="113637" i_stop="113466" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="113465" e_stop="113323" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114237" stop="113638"/>
              <exon start="113465" stop="113323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114237" stop="113638"/>
              <exon start="113465" stop="113412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114236" stop="113656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGATATACTCCAAGTGCCAGGAATTAATTCTGCTGTGTTCACCAAAGGAATCTTATAAGAAACAGATTGATGCAATGCATAGTACTGCCTTAAAAGTTCTCTCATGGTTGGATAGATTTCTTGATAAAGTTGATATGTCTGTGGAAGAGATCACATCATCTGCAAAGGGATTTGATATTCTTATTTATCCTCAACAGCTTGTTAAGGAGTTCACATTATGTCAAACTTTGCCCAAATATCAGTGGGGCAGTGCAACACTAGCAGGAAACTTCGTGTGTCCTAGCTACTCTAATGTACAGAATAACACACTTGAAGAAGAATTATCATCTGGAACGACTCCATCTAGTGGTTCTTTGGTGTGTGTGACTTACAAGATATATTTAGCCACGGAAAGGGAATGCATTATGGAACATCTTGAAGGGTCTGAAGAGTTTGAGTTTGAGATTGGCAGCGGAGCCGTATCTCCTGTTCTTGAAGCAGTTGTAACACAGATGTCCGTTGACCAGTCTGCATGTTTTACTATGGAATTGCCTGCAAAAGAGATTGTTCTAGCAGTGGCTCATGATTCTGCAAATATCATTTCATTATTGTCTTCAG : GTACTTGCTTAATGAAATGTGAAGTCACTTTGCTGCGTGTGACAGTACCCCTGGAGGATAGAATGGAACAGGCCTTATTCTCTCCCCCATTATCAAAACAACGTGTTGAATATGCGGTGCAGCACATTAGAGAATCTTGTGCT</gDNA_template>
            <first_frame> *  R  Y  T  P  S  A  R  N  *  F  C  C  V  H  Q  R  N  L  I  R  N  R  L  M  Q  C  I  V  L  P  *  K  F  S  H  G  W  I  D  F  L  I  K  L  I  C  L  W  K  R  S  H  H  L  Q  R  D  L  I  F  L  F  I  L  N  S  L  L  R  S  S  H  Y  V  K  L  C  P  N  I  S  G  A  V  Q  H  *  Q  E  T  S  C  V  L  A  T  L  M  Y  R  I  T  H  L  K  K  N  Y  H  L  E  R  L  H  L  V  V  L  W  C  V  *  L  T  R  Y  I  *  P  R  K  G  N  A  L  W  N  I  L  K  G  L  K  S  L  S  L  R  L  A  A  E  P  Y  L  L  F  L  K  Q  L  *  H  R  C  P  L  T  S  L  H  V  L  L  W  N  C  L  Q  K  R  L  F  *  Q  W  L  M  I  L  Q  I  S  F  H  Y  C  L  Q  :  V  L  A  *  *  N  V  K  S  L  C  C  V  *  Q  Y  P  W  R  I  E  W  N  R  P  Y  S  L  P  H  Y  Q  N  N  V  L  N  M  R  C  S  T  L  E  N  L  V   </first_frame>
            <second_frame>  E  D  I  L  Q  V  P  G  I  N  S  A  V  F  T  K  G  I  L  *  E  T  D  *  C  N  A  *  Y  C  L  K  S  S  L  M  V  G  *  I  S  *  *  S  *  Y  V  C  G  R  D  H  I  I  C  K  G  I  *  Y  S  Y  L  S  S  T  A  C  *  G  V  H  I  M  S  N  F  A  Q  I  S  V  G  Q  C  N  T  S  R  K  L  R  V  S  *  L  L  *  C  T  E  *  H  T  *  R  R  I  I  I  W  N  D  S  I  *  W  F  F  G  V  C  D  L  Q  D  I  F  S  H  G  K  G  M  H  Y  G  T  S  *  R  V  *  R  V  *  V  *  D  W  Q  R  S  R  I  S  C  S  *  S  S  C  N  T  D  V  R  *  P  V  C  M  F  Y  Y  G  I  A  C  K  R  D  C  S  S  S  G  S  *  F  C  K  Y  H  F  I  I  V  F  R :   Y  L  L  N  E  M  *  S  H  F  A  A  C  D  S  T  P  G  G  *  N  G  T  G  L  I  L  S  P  I  I  K  T  T  C  *  I  C  G  A  A  H  *  R  I  L  C  </second_frame>
            <third_frame>   K  I  Y  S  K  C  Q  E  L  I  L  L  C  S  P  K  E  S  Y  K  K  Q  I  D  A  M  H  S  T  A  L  K  V  L  S  W  L  D  R  F  L  D  K  V  D  M  S  V  E  E  I  T  S  S  A  K  G  F  D  I  L  I  Y  P  Q  Q  L  V  K  E  F  T  L  C  Q  T  L  P  K  Y  Q  W  G  S  A  T  L  A  G  N  F  V  C  P  S  Y  S  N  V  Q  N  N  T  L  E  E  E  L  S  S  G  T  T  P  S  S  G  S  L  V  C  V  T  Y  K  I  Y  L  A  T  E  R  E  C  I  M  E  H  L  E  G  S  E  E  F  E  F  E  I  G  S  G  A  V  S  P  V  L  E  A  V  V  T  Q  M  S  V  D  Q  S  A  C  F  T  M  E  L  P  A  K  E  I  V  L  A  V  A  H  D  S  A  N  I  I  S  L  L  S  S   : G  T  C  L  M  K  C  E  V  T  L  L  R  V  T  V  P  L  E  D  R  M  E  Q  A  L  F  S  P  P  L  S  K  Q  R  V  E  Y  A  V  Q  H  I  R  E  S  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114235" stop="113638"/>
                    <exon start="113465" stop="113323"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYSKCQELILLCSPKESYKKQIDAMHSTALKVLSWLDRFLDKVDMSVEEITSSAKGFDILIYPQQLVKEFTLCQTLPKYQWGSATLAGNFVCPSYSNVQNNTLEEELSSGTTPSSGSLVCVTYKIYLATERECIMEHLEGSEEFEFEIGSGAVSPVLEAVVTQMSVDQSACFTMELPAKEIVLAVAHDSANIISLLSSGTCLMKCEVTLLRVTVPLEDRMEQALFSPPLSKQRVEYAVQHIRESCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="121632" PGL_stop="122072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121632" e_stop="122072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="121632" e_stop="122072" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121632" stop="122072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACACACAAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCTCTAAATAATTTTTTCAAAAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGACAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAACCACTTTTATAACGAGGGGTATATCAGCTTCAAATAACAAAGTTTAGGGGTATATCAGACCCTTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  I  K  F  F  L  R  I  Q  N  *  I  T  I  H  T  Q  K  K  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  *  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  K  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  T  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  I  T  K  F  R  G  I  S  D  P  F  S </first_frame>
            <second_frame>  Y  C  R  *  S  N  F  F  F  E  Y  K  I  K  L  Q  Y  T  H  K  K  K  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  S  K  K  L  K  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  N  H  F  Y  N  E  G  Y  I  S  F  K  *  Q  S  L  G  V  Y  Q  T  L  F   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  K  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  I  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  S  K  *  F  F  Q  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  D  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  T  T  F  I  T  R  G  I  S  A  S  N  N  K  V  *  G  Y  I  R  P  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0027B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="125913" PGL_stop="125422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125913" e_stop="125422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="125913" e_stop="125422" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125913" stop="125422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCTTGACCCTTGTTATATTCTTGCTTCTTGTCTCAGATACTAAATATTTGGAGGGAATTTTTATTGAGTCTGAATTTGGATTATCTTCAAACATGTCTTTTCCATGGAAGAAGTTGAAGAAGACAAGTATATCTCAATTGGTGAAGGACCATATTCATTCTCAAAAACCTCTTATGGTGGAAACTGGTTTCCCTTCTTCCCTTGTGGATCTTTTTGTCAAGAATCGTCGAAAGTTCATGAAAACTTCCAAGAAAAAGAGGGCTCCTCCAGTGGTGGCTGAGCTCCCTTTAAGTTCTCTTTCGACTCCACCTTCCCCTGTATGTTGCATATTTGAGAAGTCTGAGTTAAAGGGGTGTCAGGAAAAAGATGAAAGATTTGATCTTGATGAAGCTGTTGATAAAAACACGGTGTTAGTCGCGCTTCTGAAGGTCTTTCTGGTGGTGTTTTTGGTTTTAGGAACAAAGAAACTTGTAATGGGAATAACAATGT</gDNA_template>
            <first_frame> M  S  *  P  L  L  Y  S  C  F  L  S  Q  I  L  N  I  W  R  E  F  L  L  S  L  N  L  D  Y  L  Q  T  C  L  F  H  G  R  S  *  R  R  Q  V  Y  L  N  W  *  R  T  I  F  I  L  K  N  L  L  W  W  K  L  V  S  L  L  P  L  W  I  F  L  S  R  I  V  E  S  S  *  K  L  P  R  K  R  G  L  L  Q  W  W  L  S  S  L  *  V  L  F  R  L  H  L  P  L  Y  V  A  Y  L  R  S  L  S  *  R  G  V  R  K  K  M  K  D  L  I  L  M  K  L  L  I  K  T  R  C  *  S  R  F  *  R  S  F  W  W  C  F  W  F  *  E  Q  R  N  L  *  W  E  *  Q  C </first_frame>
            <second_frame>  C  L  D  P  C  Y  I  L  A  S  C  L  R  Y  *  I  F  G  G  N  F  Y  *  V  *  I  W  I  I  F  K  H  V  F  S  M  E  E  V  E  E  D  K  Y  I  S  I  G  E  G  P  Y  S  F  S  K  T  S  Y  G  G  N  W  F  P  F  F  P  C  G  S  F  C  Q  E  S  S  K  V  H  E  N  F  Q  E  K  E  G  S  S  S  G  G  *  A  P  F  K  F  S  F  D  S  T  F  P  C  M  L  H  I  *  E  V  *  V  K  G  V  S  G  K  R  *  K  I  *  S  *  *  S  C  *  *  K  H  G  V  S  R  A  S  E  G  L  S  G  G  V  F  G  F  R  N  K  E  T  C  N  G  N  N  N   </second_frame>
            <third_frame>   V  L  T  L  V  I  F  L  L  L  V  S  D  T  K  Y  L  E  G  I  F  I  E  S  E  F  G  L  S  S  N  M  S  F  P  W  K  K  L  K  K  T  S  I  S  Q  L  V  K  D  H  I  H  S  Q  K  P  L  M  V  E  T  G  F  P  S  S  L  V  D  L  F  V  K  N  R  R  K  F  M  K  T  S  K  K  K  R  A  P  P  V  V  A  E  L  P  L  S  S  L  S  T  P  P  S  P  V  C  C  I  F  E  K  S  E  L  K  G  C  Q  E  K  D  E  R  F  D  L  D  E  A  V  D  K  N  T  V  L  V  A  L  L  K  V  F  L  V  V  F  L  V  L  G  T  K  K  L  V  M  G  I  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125911" stop="125423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTLVIFLLLVSDTKYLEGIFIESEFGLSSNMSFPWKKLKKTSISQLVKDHIHSQKPLMVETGFPSSLVDLFVKNRRKFMKTSKKKRAPPVVAELPLSSLSTPPSPVCCIFEKSELKGCQEKDERFDLDEAVDKNTVLVALLKVFLVVFLVLGTKKLVMGITM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="131235" PGL_stop="126689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131235" e_stop="131103"/>
            <exon e_start="129553" e_stop="129484"/>
            <exon e_start="128896" e_stop="128804"/>
            <exon e_start="128622" e_stop="128426"/>
            <exon e_start="128319" e_stop="128214"/>
            <exon e_start="127664" e_stop="127518"/>
            <exon e_start="127113" e_stop="126689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.702" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.619" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="131235" e_stop="131103" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.702">
            <gDNA_intron_boundary i_start="131102" i_stop="129554" i_length="1549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129553" e_stop="129484" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="129483" i_stop="128897" i_length="587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128896" e_stop="128804" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.882">
            <gDNA_intron_boundary i_start="128803" i_stop="128623" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128622" e_stop="128426" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.781" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128425" i_stop="128320" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128319" e_stop="128214" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="128213" i_stop="127665" i_length="549"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127664" e_stop="127518" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.619">
            <gDNA_intron_boundary i_start="127517" i_stop="127114" i_length="404"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="127113" e_stop="126689" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131235" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131225" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279374" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131215" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131194" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="127020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131194" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="127095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131193" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="127089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131188" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131182" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131174" stop="131103"/>
              <exon start="129553" stop="129484"/>
              <exon start="128896" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128214"/>
              <exon start="127664" stop="127626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128881" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128872" stop="128804"/>
              <exon start="128622" stop="128426"/>
              <exon start="128319" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="126742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128271" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="126689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128271" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="126693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128271" stop="128214"/>
              <exon start="127664" stop="127518"/>
              <exon start="127113" stop="126693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127546" stop="127518"/>
              <exon start="127113" stop="126771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278073" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAAAGTAAACAACTAAAAATATTCAATCAACATCACACAGCCAGCAGTAGAGTGTTTTGTGGTCTGCACATAGAGAGGGCACCACTTAGGGATCCTTTCAATTGAGCAAAAAAAAATCTGCATTTTTCTAT : CAATTAGCTGGTGTCCACGATGGTTGCACAAGGCTTCACTGTGGATTTAGATAAGCCACTTGTACACCAG : GTTGGCCACCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTCAGCAAGGAAGGTCCTCGATTTTTTGCTAGTGACTTTTGGGAG : TTTCTGACTCGCACAGTTTGGTGGGCAATTCCTACCATATGGCTTCCAGTTGTGTGCTATAGCATCTCTGTTTCTATCCGTATGGGTCGTACTGTTCCAGAGGTGGCACTGTTGGTGGTTTTTGGCATTTTCATCTGGACACTGATGGAATACACTCTTCATCGTTTTCTTTTCCATATCAATACAACGAGCTATTG : GGGAAACACAATTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTGGTTTTTCCTCCTGCTGCAACGGCTATTCTCCTCGTACCA : TTCTGGAACTTGATCAAATTGCTGGCAACTCCCACTACTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTTATGTATGATGTAACCCACTACTACTTGCATCACGGGCAACCAACAGTTGAAGTGCCTAAAAATCTCAAG : AAATATCACTTGAATCATCATTTTCGTATCCAGAACAAAGGTTTTGGTATCACCTCTTCCTTCTGGGACAAAGTGTTTGGAACTCTACCACATTCAAAATCAGCCAAGAACAGATGATTCCCTTCGGATAGGAGAATCACAGCACTAAGTACTTTTTATTAGAAGGGTTAGAATTATTATTTTTTTCTTTGAAATCCAGTTCCAGTCTTTTCATTTTGCCACTATGTTCATGCTACAGTTTAATTGGAACTTGGCATTCCATCCTTGTGACAACTTGTGTAAGGGTTACGTAACCGTGCTGCGAAACAATTGTGCTCATCAGTCCATCTAGGTTGTATTTAATTTTATCATTGGGCTGTATGTTGGCCATTTATTTGTACCTTGTACCAGTTTGGCAATTGGAAAAATCCTGTTGATTCATGCAA</gDNA_template>
            <first_frame> G  K  V  N  N  *  K  Y  S  I  N  I  T  Q  P  A  V  E  C  F  V  V  C  T  *  R  G  H  H  L  G  I  L  S  I  E  Q  K  K  I  C  I  F  L   : S  I  S  W  C  P  R  W  L  H  K  A  S  L  W  I  *  I  S  H  L  Y  T  R :   L  A  T  L  E  K  L  I  K  S  G  F  T  S  P  L  S  A  R  K  V  L  D  F  L  L  V  T  F  G  S :   F  *  L  A  Q  F  G  G  Q  F  L  P  Y  G  F  Q  L  C  A  I  A  S  L  F  L  S  V  W  V  V  L  F  Q  R  W  H  C  W  W  F  L  A  F  S  S  G  H  *  W  N  T  L  F  I  V  F  F  S  I  S  I  Q  R  A  I   : G  E  T  Q  F  I  I  F  F  M  A  V  I  I  S  I  P  W  M  V  Y  G  W  F  F  L  L  L  Q  R  L  F  S  S  Y  H :   S  G  T  *  S  N  C  W  Q  L  P  L  L  L  L  L  C  L  E  A  V  Y  W  A  M  L  C  M  M  *  P  T  T  T  C  I  T  G  N  Q  Q  L  K  C  L  K  I  S  R :   N  I  T  *  I  I  I  F  V  S  R  T  K  V  L  V  S  P  L  P  S  G  T  K  C  L  E  L  Y  H  I  Q  N  Q  P  R  T  D  D  S  L  R  I  G  E  S  Q  H  *  V  L  F  I  R  R  V  R  I  I  I  F  F  F  E  I  Q  F  Q  S  F  H  F  A  T  M  F  M  L  Q  F  N  W  N  L  A  F  H  P  C  D  N  L  C  K  G  Y  V  T  V  L  R  N  N  C  A  H  Q  S  I  *  V  V  F  N  F  I  I  G  L  Y  V  G  H  L  F  V  P  C  T  S  L  A  I  G  K  I  L  L  I  H  A  </first_frame>
            <second_frame>  V  K  *  T  T  K  N  I  Q  S  T  S  H  S  Q  Q  *  S  V  L  W  S  A  H  R  E  G  T  T  *  G  S  F  Q  L  S  K  K  K  S  A  F  F  Y  :  Q  L  A  G  V  H  D  G  C  T  R  L  H  C  G  F  R  *  A  T  C  T  P   : G  W  P  P  W  R  S  L  S  R  V  G  S  P  A  H  C  Q  Q  G  R  S  S  I  F  C  *  *  L  L  G   : V  S  D  S  H  S  L  V  G  N  S  Y  H  M  A  S  S  C  V  L  *  H  L  C  F  Y  P  Y  G  S  Y  C  S  R  G  G  T  V  G  G  F  W  H  F  H  L  D  T  D  G  I  H  S  S  S  F  S  F  P  Y  Q  Y  N  E  L  L  :  G  K  H  N  S  L  S  S  S  W  L  S  S  *  A  S  H  G  W  S  T  A  G  F  S  S  C  C  N  G  Y  S  P  R  T   : I  L  E  L  D  Q  I  A  G  N  S  H  Y  C  S  C  F  V  W  R  R  F  I  G  L  C  Y  V  *  C  N  P  L  L  L  A  S  R  A  T  N  S  *  S  A  *  K  S  Q   : E  I  S  L  E  S  S  F  S  Y  P  E  Q  R  F  W  Y  H  L  F  L  L  G  Q  S  V  W  N  S  T  T  F  K  I  S  Q  E  Q  M  I  P  F  G  *  E  N  H  S  T  K  Y  F  L  L  E  G  L  E  L  L  F  F  S  L  K  S  S  S  S  L  F  I  L  P  L  C  S  C  Y  S  L  I  G  T  W  H  S  I  L  V  T  T  C  V  R  V  T  *  P  C  C  E  T  I  V  L  I  S  P  S  R  L  Y  L  I  L  S  L  G  C  M  L  A  I  Y  L  Y  L  V  P  V  W  Q  L  E  K  S  C  *  F  M  Q </second_frame>
            <third_frame>   *  S  K  Q  L  K  I  F  N  Q  H  H  T  A  S  S  R  V  F  C  G  L  H  I  E  R  A  P  L  R  D  P  F  N  *  A  K  K  N  L  H  F  S  I :   N  *  L  V  S  T  M  V  A  Q  G  F  T  V  D  L  D  K  P  L  V  H  Q  :  V  G  H  L  G  E  A  Y  Q  E  W  V  H  Q  P  I  V  S  K  E  G  P  R  F  F  A  S  D  F  W  E  :  F  L  T  R  T  V  W  W  A  I  P  T  I  W  L  P  V  V  C  Y  S  I  S  V  S  I  R  M  G  R  T  V  P  E  V  A  L  L  V  V  F  G  I  F  I  W  T  L  M  E  Y  T  L  H  R  F  L  F  H  I  N  T  T  S  Y  W :   G  N  T  I  H  Y  L  L  H  G  C  H  H  K  H  P  M  D  G  L  R  L  V  F  P  P  A  A  T  A  I  L  L  V  P  :  F  W  N  L  I  K  L  L  A  T  P  T  T  A  P  A  L  F  G  G  G  L  L  G  Y  V  M  Y  D  V  T  H  Y  Y  L  H  H  G  Q  P  T  V  E  V  P  K  N  L  K  :  K  Y  H  L  N  H  H  F  R  I  Q  N  K  G  F  G  I  T  S  S  F  W  D  K  V  F  G  T  L  P  H  S  K  S  A  K  N  R  *  F  P  S  D  R  R  I  T  A  L  S  T  F  Y  *  K  G  *  N  Y  Y  F  F  L  *  N  P  V  P  V  F  S  F  C  H  Y  V  H  A  T  V  *  L  E  L  G  I  P  S  L  *  Q  L  V  *  G  L  R  N  R  A  A  K  Q  L  C  S  S  V  H  L  G  C  I  *  F  Y  H  W  A  V  C  W  P  F  I  C  T  L  Y  Q  F  G  N  W  K  N  P  V  D  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0027B01.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129546" stop="129484"/>
                    <exon start="128896" stop="128804"/>
                    <exon start="128622" stop="128426"/>
                    <exon start="128319" stop="128214"/>
                    <exon start="127664" stop="127518"/>
                    <exon start="127113" stop="126997"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSTMVAQGFTVDLDKPLVHQVGHLGEAYQEWVHQPIVSKEGPRFFASDFWEFLTRTVWWAIPTIWLPVVCYSISVSIRMGRTVPEVALLVVFGIFIWTLMEYTLHRFLFHINTTSYWGNTIHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNLIKLLATPTTAPALFGGGLLGYVMYDVTHYYLHHGQPTVEVPKNLKKYHLNHHFRIQNKGFGITSSFWDKVFGTLPHSKSAKNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 123 chains have been computed
$ 
$ memory statistics:
$ 836912 bytes spliced alignments in total
$ 82 spliced alignments have been stored
$ 10206 bytes was the average size of a spliced alignment
$ 25352 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1690 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:10:51
-->
