<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:13:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549482" ref_strand="+" ref_description="SGN-E549482 [TUS-70-N6](-)">
      <seq>tatgaaggcagttggaagaggctctcagttgaggaaaagatgataatgagaagttggatttgggaataaactgaatgttttgggttgctattggtggtattgatcccatttcttcatgctagccccatttaacatgttctgcaactcagttttaagctgtcatttatcctgaaagtaagacacttctgctctcaattcacaagggctgcaacgggttgctaatggtacaagtatgcaaccggagaatgacagtgctcctcatgaaggaacatgttataaacatttttttgcagattatgtccaacgtggaagcgaatgcaattgatttgatgttgtgtaatttttctgtattaaaatggatgagagctcttaacttgaggtggtttataacttaattttgagtagagttttgttacaactcaaggttgtgaatgttcaattaaaatgcaataatacacaactttctttgttgattgtaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="1485" stop="2561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1785" g_stop="2260" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E549482" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1785" e_stop="2260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGG-ATTAACTGAATGTTTTGGGTTGCTATTGGTGGCATTGATCCCATTTCTTCATGCTAGCACCATTTAACATGTTCTGCAGCTCAGTTTTAAGTTGCCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAAGTCACAAGGGCTGCAATGGGTTGCAAATGGTACAAGTGTGCAAGCCTAGAATGACAGTGCTCCTCAAGAAGTAACAAGTTATACACATTTTTTTTGCAGATTATGGCCAATGTAGAAGCGAATACAATTGATTTGATGTTGTGTATTTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGT-GTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGT</genome_strand>
        <mrna_strand>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGGAATAAACTGAATGTTTTGGGTTGCTATTGGTGGTATTGATCCCATTTCTTCATGCTAGCCCCATTTAACATGTTCTGCAACTCAGTTTTAAGCTGTCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAATTCACAAGGGCTGCAACGGGTTGCTAATGGTACAAGTATGCAACCGGAGAATGACAGTGCTCCTCATGAAGGAACATGTTATAAACA-TTTTTTTGCAGATTATGTCCAACGTGGAAGCGAATGCAATTGATTTGATGTTGTGTAATTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGTGGTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595363" ref_strand="+" ref_description="SGN-E595363 [38635]">
      <seq>ttttttttataacttaattttgaatagagtgtatgtatgtagtgttctgttacatctcaggtagtgaatgttcaattaaaatgcaataatacacgactttctttgttgattgtatttccatgtaaagcaaaccccattgttatacatgacatgacaaaaagattcacactgacatcccaccaacatcaaaccttgattgactatagtggctatcttttcccggtgaaaaggtacacaaccaccccaatcctagacccatcgggcggaggctctgtatgtatgatttggacatcgaaaagcttcttagctctcttgaagaaaacagattccttcttccatcttttcaaatgagccataacaaaagctatcttctttccacctcctaacaggaagaacctcaacgtctcaatcagaggatcatagagatgatcatggtacaccacatcagatcccaaaatcaggtcataatctctaccaacagcctccatatgctggttatccccccagctaagcgccgcaacatcagcaaccccacattgctgttccaaaagcttggagtttgcatcaacattgaactgtatattaggcaacacatgaggaaagtcggtgacagttaacttagcaccaagaatagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="1876" stop="3124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2186" g_stop="2278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="131" r_length="92" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2279" i_stop="2316" i_length="38">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2317" g_stop="2824" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="639" r_length="508" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E595363" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2186" e_stop="2278"/>
          <exon e_start="2317" e_stop="2824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGTATTTCCACGTAAAGCAAATACAGTAGTTTTTTACTTCTTTGTTGGGCTAACCCCATCCCCATTGTTATACATGACATGACAATAAGATTCAGACTGACATCCCACCAACATCTAGCCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTATACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCGGTATGTATGATTTGGACATCAAAAAGCTTCTTGGCTCTCTTGAAGAAAGCAGATTCCTTCTTCCATCTTCTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTGTTAATCAGAGGATCATAGAGGTGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAACACCCCCACTCTGTTGTTCCAAAA-CTTGTGAGTTTGCATCAACATTGAACTGTATATTAGGCAGCACATGAGGAAGGTCAGTGACAGTAACCTTAGCACCAAGAATAGCAGCA</genome_strand>
        <mrna_strand>TAGTGTTCTGTTACATCTC-AGGTAGTGAATGTTCAATTAAAATGCAATAATACACGACTTTCTTTGTTGATTGTATTTCCATGTAAAGCAAA......................................CCCCATTGTTATACATGACATGACAAAAAGATTCACACTGACATCCCACCAACATCAAACCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTACACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCTGTATGTATGATTTGGACATCGAAAAGCTTCTTAGCTCTCTTGAAGAAAACAGATTCCTTCTTCCATCTTTTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTCTCAATCAGAGGATCATAGAGATGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAGCAACCCCACATTGCTGTTCCAAAAGCTTG-GAGTTTGCATCAACATTGAACTGTATATTAGGCAACACATGAGGAAAGTCGGTGACAGTTAACTTAGCACCAAGAATAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541638" ref_strand="+" ref_description="SGN-E541638 [TUS-62-I13]">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2712" stop="1923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2412" g_stop="2215" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E541638" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2412" e_stop="2215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541645" ref_strand="+" ref_description="SGN-E541645 [TUS-62-I17]">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2712" stop="1923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2412" g_stop="2215" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E541645" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2412" e_stop="2215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299240" ref_strand="+" ref_description="SGN-E299240 [cLET-43-A14]">
      <seq>tcaccgggaaaagatagccactattgtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2711" stop="1923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2411" g_stop="2215" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E299240" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2411" e_stop="2215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TCACCGGGAAAAGATAGCCACTATTGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548583" ref_strand="+" ref_description="SGN-E548583 [TUS-62-I17](-)">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="2712" stop="1923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2412" g_stop="2224" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E548583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2412" e_stop="2224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTA</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262999" ref_strand="+" ref_description="SGN-E262999 [cLEG-59-C6]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttgaggttcttcctgttaggaggtggaaagaagatagcttttgttatggctcatttgagaagatggaagaaggaatctgctttcttcaagagagccaagaagctttttgatgtccaaatcatacataccgagcctccgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3469" stop="2145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3169" g_stop="2445" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E262999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3169" e_stop="2445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265849" ref_strand="+" ref_description="SGN-E265849 [cLEI-11-M2]">
      <seq>gaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgattggttcaaacgtcatgaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3462" stop="2283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3162" g_stop="2583" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E265849" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3162" e_stop="2583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGA</genome_strand>
        <mrna_strand>GAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTGGTTCAAACGTCATGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308156" ref_strand="+" ref_description="SGN-E308156 [cLEY-14-I12]">
      <seq>ttctccaattgtcgaaatcaaaggagacattgacacggacgacctcaatgcgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3475" stop="2284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3175" g_stop="2584" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E308156" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3175" e_stop="2584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</genome_strand>
        <mrna_strand>TTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATGCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255211" ref_strand="+" ref_description="SGN-E255211 [cLEG-31-F1]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3469" stop="2286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3169" g_stop="2586" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E255211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3169" e_stop="2586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256514" ref_strand="+" ref_description="SGN-E256514 [cLEG-38-C21]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3469" stop="2332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3169" g_stop="2632" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E256514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3169" e_stop="2632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257051" ref_strand="+" ref_description="SGN-E257051 [cLEG-44-O4]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3469" stop="2372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3169" g_stop="2672" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E257051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3169" e_stop="2672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATAT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287417" ref_strand="+" ref_description="SGN-E287417 [cLES-15-B9]">
      <seq>ttttttttttaattgattgataattatttaaacaaaaaaatcaatccttttggttttaaattcgttattaccatctggcgtccttcaaattctttggcaacttgaccattttatattctatatttatggtaatactactttaccatttatattaccaaaaaaaaataaaaaataaaaatttgttgttagggcaagactccgcagactgggtcggataaacccctcaagaaccccggaatcgccgccgcctgtcacatgacttctccaattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="3727" stop="2691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3427" g_stop="2991" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="445" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E287417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3427" e_stop="2991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTT</genome_strand>
        <mrna_strand>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430596" ref_strand="+" ref_description="SGN-E430596 [STM-53-N12]">
      <seq>tactaaaaaagaggcatttttcttcaaaagagatggtgaacttggtagaagcgcattagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgctgaaaccataattcaaaaaacaaagaaaaacaaaaaaatcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggttaaggaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaagcgttggtggtgtctggatcgatattggcgatgactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22192" stop="23350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22461" g_stop="23050" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E430596" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22461" e_stop="23050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTACACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATT</genome_strand>
        <mrna_strand>TAC-TAAAAAAGAGGCATTTTTCTT-CAAA--A-GAGATGGTGAACTTGGTAGAAGCGCATTAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGTTAAGGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAAGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311250" ref_strand="+" ref_description="SGN-E311250 [cLEZ-16-J7]">
      <seq>acaagaaatatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22168" stop="23365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22468" g_stop="23065" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E311250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22468" e_stop="23065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCA</genome_strand>
        <mrna_strand>ACAAGAAATATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543561" ref_strand="+" ref_description="SGN-E543561 [TUS-65-H2]">
      <seq>caagaaacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtgggcgtttaagatggcggaaatgtttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22169" stop="23298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22469" g_stop="22998" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E543561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22469" e_stop="22998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGT-GGCGTTTAAGATGGCGGAAATGTTTCCA</genome_strand>
        <mrna_strand>CAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGGCGTTTAAGATGGCGGAAATGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304846" ref_strand="+" ref_description="SGN-E304846 [cLEX-10-N24]">
      <seq>aagaaacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22170" stop="23347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22470" g_stop="23047" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E304846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22470" e_stop="23047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTG</genome_strand>
        <mrna_strand>AAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701122" ref_strand="+" ref_description="SGN-E701122 [FA15AD04]">
      <seq>gacacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22172" stop="24761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22472" g_stop="23202" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="821" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="889" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="24701" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="897" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E701122" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22472" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="24701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGG</genome_strand>
        <mrna_strand>GACACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430660" ref_strand="+" ref_description="SGN-E430660 [STM-54-C23]">
      <seq>catttttcttcaaaagagatggtgaacttggtagaagcgctgaagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgctgaaaccataattcaaaaaacaaagaaaaacaaaaaaatcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggttaaggaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaggccctgctaaaagtggctgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22192" stop="23456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22476" g_stop="23157" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E430660" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22476" e_stop="23157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTAC</genome_strand>
        <mrna_strand>CATTTTTCTT-C-A--AAAGAGATGGTGAACTTGGTAGAAGCGCTGAAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGTTAAGGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTT-AGGCCCTGCTAAAAGTGGCTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462126" ref_strand="+" ref_description="SGN-E462126 [cPRO-10-P7]">
      <seq>catttttccttcaaaagagatggtgaacttggtagaagcgcagaagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgcctgaaaccataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22192" stop="22928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22476" g_stop="22628" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E462126" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22476" e_stop="22628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCT-TCTGAAACCATAAT</genome_strand>
        <mrna_strand>CATTTTTCCTTC-AA--AAGAGATGGTGAACTTGGTAGAAGCGCAGAAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCCTGAAACCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746365" ref_strand="+" ref_description="SGN-E746365 [GI|47104279]">
      <seq>cttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacactactgcaaagttcactatcgtaatatcatgtaactttttgtcaatgaaaaggaaaacaactatgtgcttcctctgtaatattagttactatgtaatttgggttcagaatttgaaatcatcatcttaaacaaatatatacaaacatatattgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22183" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22483" g_stop="23202" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="810" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="878" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="25003" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1188" r_length="310" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E746365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22483" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="25003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGTTA</genome_strand>
        <mrna_strand>CTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573788" ref_strand="+" ref_description="SGN-E573788 [33153]">
      <seq>tcaaaagagatggtgaacttggtagaagcacagaagccattgttgcatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacaaagaaaaacaaaaaaagcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggctgatgaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaagggcctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22192" stop="23443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22489" g_stop="23143" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E573788" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22489" e_stop="23143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAA</genome_strand>
        <mrna_strand>TCAAAAGAGATGGTGAACTTGGTAGAAGCACAGAAGCCATTGTTGCATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAAGCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGATGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTTAAGGGCCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746716" ref_strand="+" ref_description="SGN-E746716 [GI|51457951]">
      <seq>atggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttggggattttcatcttcttcggagctgctgctgcctacctctgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22198" stop="23423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22498" g_stop="23123" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E746716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22498" e_stop="23123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTT-GGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAA</genome_strand>
        <mrna_strand>ATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213701" ref_strand="+" ref_description="SGN-E213701 [cLEC-76-N7]">
      <seq>ttagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22249" stop="23417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22549" g_stop="23117" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E213701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22549" e_stop="23117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTC</genome_strand>
        <mrna_strand>TTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708861" ref_strand="+" ref_description="SGN-E708861 [FA36DH07]">
      <seq>cattaaaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgnttatacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagccaaaagtgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22345" stop="25132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22642" g_stop="23202" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="651" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="719" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="24832" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="856" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E708861" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22642" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGG</genome_strand>
        <mrna_strand>CATTAAAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGNTTAT-ACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAG-CCAAAAGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430661" ref_strand="-" ref_description="SGN-E430661 [STM-54-C23]">
      <seq>gcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaataactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22637" stop="25258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22937" g_stop="23202" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="356" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="24961" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="690" r_length="266" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E430661" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22937" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="24961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTT</genome_strand>
        <mrna_strand>GCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAATAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAAT--TGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548898" ref_strand="+" ref_description="SGN-E548898 [TUS-65-H2](-)">
      <seq>tgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacactactgcaaagttcactatcgtaatatcatgtaactttttgtcaatgaaaaggaaaacaactatgtgcttcctctgtaatattagttactatgtaatttgggttcagaatttgaaatcatcatcttaaacaaatatatacaaacatatattgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22707" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23007" g_stop="23202" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="286" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="354" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="24998" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="659" r_length="305" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E548898" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23007" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="24998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGA</genome_strand>
        <mrna_strand>TGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431114" ref_strand="-" ref_description="SGN-E431114 [STM-54-N22]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgcccttgcgtttataacaagtgtctcaagcagttccttacatccgtgcatgcagaaaaagcccaaaagtgaaggacagttctgcaaagttcattatcgtaatatcatgcaactttttgtttacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacacgaggaatacaaatatgtatgcaacaattagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22819" stop="25266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23119" g_stop="23202" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="25002" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="551" r_length="309" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E431114" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23119" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="25002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACA-AATATATACAAACATATATTGCAAATTGCAGATGTT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGCCCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCGTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTTCTGCAAAGTTCATTATCGTAATATCATGCAACTTTTTGTTTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACACGAGGAATACAAATATGTA-TGCAACAATTAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431113" ref_strand="+" ref_description="SGN-E431113 [STM-54-N22]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagatgctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagcaaggcttggtggtgagctacaaagacactactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaagggaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaagaagcccatgagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctaccaaaaggagaaccactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttagacaatatatacaaatatgtattgctaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22819" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23119" g_stop="23202" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="175" r_length="91" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="243" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="25001" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="550" r_length="307" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E431113" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23119" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="25001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAG-AAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGATGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGCAAGGCTTGGTGGTGAGCTACAAAGACACTACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGGAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAGAAGCCCATGAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACCAAAAGGAGAACCACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAGAC-AATATATACAAATATGTATTGCTAAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458950" ref_strand="+" ref_description="SGN-E458950 [cPRO-32-L12]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacaaatatatacaaatatgtattgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22819" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23119" g_stop="23202" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="25001" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="550" r_length="308" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E458950" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23119" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="25001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACAAATATATACAAATATGTATTGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463351" ref_strand="+" ref_description="SGN-E463351 [cPRO-14-K10]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctggaatattaggtactatgtaatttggggtcagaaattgaaattgttgtcttaaacaatatatacaaatatgtattgccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="22819" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23119" g_stop="23202" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24209" g_stop="24298" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24694" g_stop="25000" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="548" r_length="306" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E463351" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23119" e_stop="23202"/>
          <exon e_start="24209" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="25000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATG</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGGAATATTAGGTACTATGTAATTTGGGGTCAGAAATTGAAATTGTTGTCTTAAAC-AATATATACAAATATGTATTGCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610678" ref_strand="+" ref_description="SGN-E610678 [57844]">
      <seq>caacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacaaatatatacaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="23965" stop="25284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24265" g_stop="24298" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24388" g_stop="24455" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="102" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24694" g_stop="24989" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="398" r_length="296" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E610678" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24265" e_stop="24298"/>
          <exon e_start="24388" e_stop="24455"/>
          <exon e_start="24694" e_stop="24989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCA</genome_strand>
        <mrna_strand>CAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACAAATATATACAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261087" ref_strand="+" ref_description="SGN-E261087 [cLEG-65-M19]">
      <seq>tcgcactccagcaactcagtggagttaatggtgttttattctattccagtaacatcttcaaatcagctgcaagaggtgatgaactggagaattagacaacaaaaagtcgggaccacatctgatatcaggatgaagtttttgtagtagattcaagtaaaataggaatatcatccagtaaagcagcaacatttggtattggggctattcaggtcatcgtcactggtatctctgcatcactggtggacaaggcgggacgcaggctactcctcattgtatcctcatctgtaatgactgctagcagcttgcttgttgcaatgtcattcttcctgaaggagttcacctctgaaaattggcattcattctttgcagtattgtctctggttggacttgtggccttggtgatggcatttggtgttggattgggatccataccttggatcataatgtctgagattctgcctgtaagcatcaaaagtctgggtggcagtgttgcaactttggccaattggttttcagcatggattgttacaatgacagcaaatttgcttttaacttggagntaaggaggaacatttgctatctatgcactggtatcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="28301" stop="24928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28001" g_stop="27933" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27932" i_stop="26899" i_length="1034">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26898" g_stop="26806" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26805" i_stop="26591" i_length="215">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26590" g_stop="26544" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26543" i_stop="26470" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26469" g_stop="26407" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26406" i_stop="26322" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26321" g_stop="26262" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26261" i_stop="26137" i_length="125">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.073" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26136" g_stop="26077" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="392" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26076" i_stop="25951" i_length="126">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25950" g_stop="25891" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25890" i_stop="25455" i_length="436">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25454" g_stop="25340" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="567" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25339" i_stop="25262" i_length="78">
            <donor d_prob="0.533" d_score="0.96"/>
            <acceptor a_prob="0.663" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25261" g_stop="25228" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="601" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E261087" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28001" e_stop="27933"/>
          <exon e_start="26898" e_stop="26806"/>
          <exon e_start="26590" e_stop="26544"/>
          <exon e_start="26469" e_stop="26407"/>
          <exon e_start="26321" e_stop="26262"/>
          <exon e_start="26136" e_stop="26077"/>
          <exon e_start="25950" e_stop="25891"/>
          <exon e_start="25454" e_stop="25340"/>
          <exon e_start="25261" e_stop="25228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTGGTCAGTTCCGTTCCTTGATTATCTGTTAGAAATGCATACCTGAATTAGCAATAGGAGCGGGGATTTTCCATGGTGCGCACCCAAAGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAAGAAAAAGAAATGCATACCTGAATCATCAAATGATTTGAAACTGGCAGTTACAAGTATTATCACACCATTCTTTTTGTTCTTTACTCTGGCTGGTAGAAACAGAGTAAGTAACAACCCGGAGAGCAGAAATGGGAAAAAGAATTCCACGTTTTGCATGAAGAGTATAATGAATTTCTTCCTCTGCATCCTAGATAACACCCTGCAATAAATATGGGATGACGAAAGACTTCGTTTTGTGTGAGGGGGGAGAGCTCAAAAGACAAAGTTTGAAGTTTTGAACTATCAACTTATTCCATCTAAAAAAGAAACTATCAACTTATTAATAAGAAAAGTATTAAAGCTATTAACTGTAAAGGAACCGTAGAATGTATATCACCTGGTAAGATCAAGCCTACTTTTAAGGTACTCTTGAAAGAAAAAACAATAAGTTGACTAAACACAATAAACAGTTTCTTTTTAAGTTGTTTTGAATTTTTATTTTGATGTTTGTGAAAACGAAGTTTTGATATTTATGTCCTTTTCAAATTCCTTCCAGTACTTCTTGCTTTTGCTTGAACGTATGCCTGGAAAATCTGCTTGATGGAAATTGATATGGAACTTAGCCATATTTCATGAGTGTCCATTCAAATATGCCATGCCTTTTGAACTATCATTTTCATTTTGTTGGTACCTGAGAAATGATTCCCATGTTGTGATGATCTCTCAATCTAAGATAATATACCATTATCCAGATTCACATACACTGCAGTGCCAAAAGGTAATATGCCCTTAAGCAGATCGACATATACTACAGTTTGGGTAAACAGCTTTACCAAACACCAGCTAGAGACTTGTATATTCATTCATGACCCAACCATGTTGTAGCATGATATCCACCTTGAACAAAATTTTTGATTACATTGTCAGCAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAGGCAAGTTACTACGAACTATTGTCTTAATTCTACATTATCGCGTGCAGTATCCCACTCTAAGAAGGTATCACGAGCCTTCTCTTAATTTGCCAAATTAATTCCAGGTGTATCAGAATTAGACTTTATGTATAATACCGCCTAATCATAGAGACACTATGAAATGTTACAACTGGTTTGACATAGGAGTTTAATTGTAATGCTCTTCAAATTGGCAGGAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAGGTAAGCTGGTTCCCTTGGATCTAGTCTTAGTTTATATTTATATATTATTCCAAGTTGATGTACATCTTTTATAGGTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATTGTAAGCCCTTCCAGAAATTTCACATGAAGTTTCTATTGCTGAAAAATAAAACAAATGGATAACTTGATTATACTCTTTTCTTTAGGTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAGGTCAGTTGAATTTACATTCATAATAATTGATCAAGCAATTTCCTGAATTTAATGAGATCTCTTTCTTTCTGTCGGGATTGACTTTCTTTATATGTCATTCCACAAACTTTTTCTACTCAATCCAGGAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTGGTATAGTTCCTGTCTTACCTTCTATTGTTCCAACCCTATGATCCTAACCCCCCCCCCCTGCTCGCATCTCTGTTCCATTGTTGCATTCTAGCATATCTGAGACACTTAACGTATTAATTTTTACAGGCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAGGTATAACAAAGCTAATCTATAGTTCGGGAGACCAGGAAATATATATGTTCCTAAACATAATTAAAAATAGAGCATAGATGAAACTTGTAACATTTTCCGGAGAATGTGGTTGAGAAATTTGAGAAAAACTGACATACAGATCACCCCGTTAAAGGAGATAATATTAGTTTTAAAGGAAGATCAAGCATTATTGCAGGTTTCTTTAACATATTAAGTAACTGCCAGGACAAATTTTTGGTTCAAACTTTCTTCCTAGAAAATATTCTTACTGAACTTGAGATGTTATTCAAGGACACTAGCATAGGTTTTACGATTCTCTTTATTTTTTGGGATTTAAGAGCCTCACTGCTCTAATAAATAGTCCTATTGCACGACAATAGGAAGAATGATCTGTTTTTCATCTCTTGAGACATCAAGTTTTTAATTGGTTGTGCAGATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAGGTTTCTCTCTCTCTCTCCGTTTCTCTATTGGTATTCACACCATGCTTGGAGTGACTCTAAAGACTGTAAATTTGGCAGGAACATTTGCTATCTATGCACTGGTATCAGCTTT</genome_strand>
        <mrna_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG.......................................................................................................................................................................................................................GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG..........................................................................GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT.....................................................................................GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG.............................................................................................................................GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG..............................................................................................................................GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGNTAAGGAG..............................................................................GAACATTTGCTATCTATGCACTGGTATCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258137" ref_strand="+" ref_description="SGN-E258137 [cLEG-48-N10]">
      <seq>tcgcactccagcaactcagtggagttaatggtgttttattctattccagtaacatcttcaaatcagctgcaagaggtgatgaactggagaattagacaacaaaaagtcgggaccacatctgatatcaggatgaagtttttgtagtagattcaagtaaaataggaatatcatccagtaaagcagcaacatttggtattggggctattcaggtcatcgtcactggtatctctgcatcactggtggacaaggcgggacgcaggctactcctcattgtatcctcatctgtaatgactgctagcagcttgcttgttgcaatgtcattcttcctgaaggagttcacctctgaaaattggcattcattctttgcagtattgtctctggttggacttgtggccttggtgatggcatttggtgttggattgggatccataccttggatcataatgtctgagattctgcctgtaagcatcaaaagtctgggtggcagtgttgcaactttggccaattggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="28301" stop="25094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28001" g_stop="27933" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27932" i_stop="26899" i_length="1034">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26898" g_stop="26806" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26805" i_stop="26591" i_length="215">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26590" g_stop="26544" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26543" i_stop="26470" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26469" g_stop="26407" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26406" i_stop="26322" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26321" g_stop="26262" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26261" i_stop="26137" i_length="125">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.073" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26136" g_stop="26077" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="392" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26076" i_stop="25951" i_length="126">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25950" g_stop="25891" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25890" i_stop="25455" i_length="436">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25454" g_stop="25394" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="513" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E258137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28001" e_stop="27933"/>
          <exon e_start="26898" e_stop="26806"/>
          <exon e_start="26590" e_stop="26544"/>
          <exon e_start="26469" e_stop="26407"/>
          <exon e_start="26321" e_stop="26262"/>
          <exon e_start="26136" e_stop="26077"/>
          <exon e_start="25950" e_stop="25891"/>
          <exon e_start="25454" e_stop="25394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTGGTCAGTTCCGTTCCTTGATTATCTGTTAGAAATGCATACCTGAATTAGCAATAGGAGCGGGGATTTTCCATGGTGCGCACCCAAAGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAAGAAAAAGAAATGCATACCTGAATCATCAAATGATTTGAAACTGGCAGTTACAAGTATTATCACACCATTCTTTTTGTTCTTTACTCTGGCTGGTAGAAACAGAGTAAGTAACAACCCGGAGAGCAGAAATGGGAAAAAGAATTCCACGTTTTGCATGAAGAGTATAATGAATTTCTTCCTCTGCATCCTAGATAACACCCTGCAATAAATATGGGATGACGAAAGACTTCGTTTTGTGTGAGGGGGGAGAGCTCAAAAGACAAAGTTTGAAGTTTTGAACTATCAACTTATTCCATCTAAAAAAGAAACTATCAACTTATTAATAAGAAAAGTATTAAAGCTATTAACTGTAAAGGAACCGTAGAATGTATATCACCTGGTAAGATCAAGCCTACTTTTAAGGTACTCTTGAAAGAAAAAACAATAAGTTGACTAAACACAATAAACAGTTTCTTTTTAAGTTGTTTTGAATTTTTATTTTGATGTTTGTGAAAACGAAGTTTTGATATTTATGTCCTTTTCAAATTCCTTCCAGTACTTCTTGCTTTTGCTTGAACGTATGCCTGGAAAATCTGCTTGATGGAAATTGATATGGAACTTAGCCATATTTCATGAGTGTCCATTCAAATATGCCATGCCTTTTGAACTATCATTTTCATTTTGTTGGTACCTGAGAAATGATTCCCATGTTGTGATGATCTCTCAATCTAAGATAATATACCATTATCCAGATTCACATACACTGCAGTGCCAAAAGGTAATATGCCCTTAAGCAGATCGACATATACTACAGTTTGGGTAAACAGCTTTACCAAACACCAGCTAGAGACTTGTATATTCATTCATGACCCAACCATGTTGTAGCATGATATCCACCTTGAACAAAATTTTTGATTACATTGTCAGCAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAGGCAAGTTACTACGAACTATTGTCTTAATTCTACATTATCGCGTGCAGTATCCCACTCTAAGAAGGTATCACGAGCCTTCTCTTAATTTGCCAAATTAATTCCAGGTGTATCAGAATTAGACTTTATGTATAATACCGCCTAATCATAGAGACACTATGAAATGTTACAACTGGTTTGACATAGGAGTTTAATTGTAATGCTCTTCAAATTGGCAGGAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAGGTAAGCTGGTTCCCTTGGATCTAGTCTTAGTTTATATTTATATATTATTCCAAGTTGATGTACATCTTTTATAGGTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATTGTAAGCCCTTCCAGAAATTTCACATGAAGTTTCTATTGCTGAAAAATAAAACAAATGGATAACTTGATTATACTCTTTTCTTTAGGTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAGGTCAGTTGAATTTACATTCATAATAATTGATCAAGCAATTTCCTGAATTTAATGAGATCTCTTTCTTTCTGTCGGGATTGACTTTCTTTATATGTCATTCCACAAACTTTTTCTACTCAATCCAGGAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTGGTATAGTTCCTGTCTTACCTTCTATTGTTCCAACCCTATGATCCTAACCCCCCCCCCCTGCTCGCATCTCTGTTCCATTGTTGCATTCTAGCATATCTGAGACACTTAACGTATTAATTTTTACAGGCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAGGTATAACAAAGCTAATCTATAGTTCGGGAGACCAGGAAATATATATGTTCCTAAACATAATTAAAAATAGAGCATAGATGAAACTTGTAACATTTTCCGGAGAATGTGGTTGAGAAATTTGAGAAAAACTGACATACAGATCACCCCGTTAAAGGAGATAATATTAGTTTTAAAGGAAGATCAAGCATTATTGCAGGTTTCTTTAACATATTAAGTAACTGCCAGGACAAATTTTTGGTTCAAACTTTCTTCCTAGAAAATATTCTTACTGAACTTGAGATGTTATTCAAGGACACTAGCATAGGTTTTACGATTCTCTTTATTTTTTGGGATTTAAGAGCCTCACTGCTCTAATAAATAGTCCTATTGCACGACAATAGGAAGAATGATCTGTTTTTCATCTCTTGAGACATCAAGTTTTTAATTGGTTGTGCAGATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTT</genome_strand>
        <mrna_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG.......................................................................................................................................................................................................................GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG..........................................................................GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT.....................................................................................GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG.............................................................................................................................GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG..............................................................................................................................GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547709" ref_strand="+" ref_description="SGN-E547709 [TUS-71-L17]">
      <seq>atgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatgggaaggctgttggaaggttttggtgtcggcattatttcctatgtggtgcctgtatatatagcagagatttcacctaaaaacatgaggggagttcttggatccattaaccagctctctgtaacagtggggattatgctggtatatctgttgggattatttgtaagctggagagtgcttgctgttataggaatgttaccatgcatggttttgatacctggtctattttttatacctgaatctcctcgttggttggctaaaaatgggctgaatgaagattttgaacttctttgcaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="31010" stop="28102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30710" g_stop="30522" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30377" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="29787" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="342" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29529" g_stop="29470" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29371" g_stop="29306" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="468" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29305" i_stop="29215" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29214" g_stop="29149" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="534" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29148" i_stop="29026" i_length="123">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29025" g_stop="28950" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="610" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28949" i_stop="28593" i_length="357">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28592" g_stop="28528" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="675" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28527" i_stop="28449" i_length="79">
            <donor d_prob="0.351" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28448" g_stop="28402" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="721" r_length="46" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E547709" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30710" e_stop="30522"/>
          <exon e_start="30439" e_stop="30377"/>
          <exon e_start="29876" e_stop="29787"/>
          <exon e_start="29529" e_stop="29470"/>
          <exon e_start="29371" e_stop="29306"/>
          <exon e_start="29214" e_stop="29149"/>
          <exon e_start="29025" e_stop="28950"/>
          <exon e_start="28592" e_stop="28528"/>
          <exon e_start="28448" e_stop="28402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTGGTAATCTTAAGTGTTCAACTTCTCTACTTGTTCTTCTTGAAGTTATGGTTAATAGTCCTGCTTGGTGAATCTTCTTGCTTGTTATCTGTAGGTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAGGTTGGTTTTGTATTGGGATTTAGAGATATCCCTGGTCACTCAATTCTCTAGGTTTTATGATATACAAATAAAAATGGCTCATTTTCAATTGAAAAAAGAAATAATTTGATCTCTTGGCATTAGCTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAGGTGAGCAATACAGTTTTTCTTTTTAAATTAGCTTAATTGCAATAGTTTCCCTAACCATGTGGTGATTGACAAACTGATTGTTATCTTATTAACTTCTCTATTTTAAGATGGTAGAATTAGTAGGATTTTTTTTTAATCAAGTAAGCATTTGACGACGTTCATCTTGTTGAAACAAGTTTTTCATCTTTCTAAAATTCCCTTTCCTTCTTGAAATATTTGAAGTTATTCTTCATCTGCAAGTTCATTGAAGCAACTCAAAAACATTGAATGAGCTGATGTCTTTCTGTTATAATGTGAAGTCATTTGTATACCTGATTTTGAACATATTTATTAATAATCCTTTATGTCACTCTGCAGGAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTGGTATGAGTTCCAAACTTATGTTTGTCACAACTAGGTTTTCATTTTTACATTATACTGATGTCAATGCTGCATTATTTAGGCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCT</genome_strand>
        <mrna_strand>ATGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG...........................................................................................GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG...........................................................................................................................CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG.....................................................................................................................................................................................................................................................................................................................................................................GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG...............................................................................GCTAAAAATGGGCTGAATGAAGATTTTG-AACTTCTTTGCAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365090" ref_strand="+" ref_description="SGN-E365090 [cLPP-17-K15]">
      <seq>tgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatgggaaggctgttggaaggttttggtgtcggcattatttcctatgtggtgcctgtatatatagcagagatttcacctaaaaacatgaggggagttcttggatccattaaccagctctctgtaacagtggggattatgctggtatatctgttgggattatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="31009" stop="28676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30709" g_stop="30522" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30377" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="251" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="29787" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="341" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29529" g_stop="29470" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="401" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29371" g_stop="29306" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="467" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29305" i_stop="29215" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29214" g_stop="29149" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="533" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29148" i_stop="29026" i_length="123">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29025" g_stop="28976" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="583" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E365090" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30709" e_stop="30522"/>
          <exon e_start="30439" e_stop="30377"/>
          <exon e_start="29876" e_stop="29787"/>
          <exon e_start="29529" e_stop="29470"/>
          <exon e_start="29371" e_stop="29306"/>
          <exon e_start="29214" e_stop="29149"/>
          <exon e_start="29025" e_stop="28976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTGGTAATCTTAAGTGTTCAACTTCTCTACTTGTTCTTCTTGAAGTTATGGTTAATAGTCCTGCTTGGTGAATCTTCTTGCTTGTTATCTGTAGGTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAGGTTGGTTTTGTATTGGGATTTAGAGATATCCCTGGTCACTCAATTCTCTAGGTTTTATGATATACAAATAAAAATGGCTCATTTTCAATTGAAAAAAGAAATAATTTGATCTCTTGGCATTAGCTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGT</genome_strand>
        <mrna_strand>TGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG...........................................................................................GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG...........................................................................................................................CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360869" ref_strand="+" ref_description="SGN-E360869 [cLPP-7-N24]">
      <seq>ttttttcacctttatcctaaacggaaacagaagacacggaacaacaatgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="31056" stop="29051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="30522" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30377" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="29787" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29529" g_stop="29470" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="448" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29371" g_stop="29351" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="469" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E360869" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="30522"/>
          <exon e_start="30439" e_stop="30377"/>
          <exon e_start="29876" e_stop="29787"/>
          <exon e_start="29529" e_stop="29470"/>
          <exon e_start="29371" e_stop="29351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATG</genome_strand>
        <mrna_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACAATGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392643" ref_strand="+" ref_description="SGN-E392643 [TUS-36-D5]">
      <seq>cagaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaattcacccttgtaatttttcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41284" stop="42555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41584" g_stop="42255" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E392643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41584" e_stop="42255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGC</genome_strand>
        <mrna_strand>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCACCCTTGTAATTTTTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376832" ref_strand="+" ref_description="SGN-E376832 [TUS-19-L1]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41285" stop="42534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41585" g_stop="42234" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E376832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41585" e_stop="42234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAAT</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242551" ref_strand="+" ref_description="SGN-E242551 [cLED-30-F21]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41285" stop="42529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41585" g_stop="42229" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E242551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41585" e_stop="42229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGG</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237835" ref_strand="+" ref_description="SGN-E237835 [cLED-18-H11]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41285" stop="42526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41585" g_stop="42226" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E237835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41585" e_stop="42226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAA</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237981" ref_strand="+" ref_description="SGN-E237981 [cLED-18-H9]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41285" stop="42496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41585" g_stop="42196" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E237981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41585" e_stop="42196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGT</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231057" ref_strand="+" ref_description="SGN-E231057 [cLED-5-N11]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccggcttctcttccagctgtgcctacgcaggaacaacaccatcataaatacccttacagctatccaagaggtcacatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41285" stop="42442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41585" g_stop="42142" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E231057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41585" e_stop="42142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCA</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGGCTTCTCTTCCAGCTGTGCCTACGCAGGAACAACACCATCATAAATACCCTTACAGCTATCCAAGAGGTCACATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237873" ref_strand="+" ref_description="SGN-E237873 [cLED-18-H2]">
      <seq>aaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41297" stop="42510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41597" g_stop="42210" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E237873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41597" e_stop="42210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATAT</genome_strand>
        <mrna_strand>AAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376831" ref_strand="+" ref_description="SGN-E376831 [TUS-19-L1](-)">
      <seq>aataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaattcagccttgtaatttttcggcatcgaagaagagatttcgaacgaaattcagtcaacaacagaaagatagaatgctagagttcgctgagaaactgggatggagaattcagaaacaagatgaacaagaagtgcatcaattttgtaatgaagtgggcgtgaagagacaagtgttcaaagtgtggatgcacaacagcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcactagtagcaccaattaattctatcacaaaagtctctttaaattccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41808" stop="42954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42108" g_stop="42653" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="556"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E376831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42108" e_stop="42653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</genome_strand>
        <mrna_strand>AATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711518" ref_strand="+" ref_description="SGN-E711518 [FB02AH07]">
      <seq>gggagttgcagccgattaatgaagtgaagatctgaatatgtttcacggaggaccccgggtaattcagccttgtaatttttcggcatcgaagaagagatttcgaacgaaattcagtcaacaacagaaagatagaatgctagagttcgctgagaaactgggatggagaattcagaaacaagatgaacaagaagtgcatcaattttgtaatgaagtgggcgtgaagagacaagtgttcaaagtgtggatgcacaacagcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcactagtagcaccaattaattctatcacaaaagtctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="41872" stop="42947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42172" g_stop="42646" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="486"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E711518" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42172" e_stop="42646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAA</genome_strand>
        <mrna_strand>GGGAGTTGCAGCCGATTAATGAAGTGAAGATCTGAATATGTTTCACGGAGGACCCCGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392516" ref_strand="+" ref_description="SGN-E392516 [TUS-36-D5](-)">
      <seq>agcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcaggtagtcgcaccaattaattctatcacaaaagtctctttaaattccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="42125" stop="42954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42425" g_stop="42653" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="231" polyA_stop="241"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E392516" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42425" e_stop="42653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCA-CTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</genome_strand>
        <mrna_strand>AGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCAGGTAGTCGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705458" ref_strand="+" ref_description="SGN-E705458 [FA27AH02]">
      <seq>caacagtctaagcaaagtgattcttggactgattgggtctcttccaaattgtcgcagcaccaagacgatgcgaaagatgaagcccaaagattagcggatagagcaaagggaactgcatcaaatgcaagagattctgttaattctgctgcacatgaaacccaaaggtatggttctcaaaaggctaaggagatggctgatgtagcatctgacaaatttggtgatgctaaaaattatgcgtccaagaaagccaatcaagctatggatgcagcagcagataccgctagtcatgccaaagaaagaggaaaagaaaatgcgtatgatgcttatgcctatgcatcggagaaaaccggccaagccacaaaaacagctgccgagtttgccaaggaaaaggctcatggtgcttatgcctatgcatctgataaggcaggtcaagccaagaacattgcttcagatacggccgccaatgctaaagaaagtgccaaaaataaggctcatgatgctactgattttgccaaagagaaggcacatgatgcttatgcttatgcttctgacaaggcaagtcaagccactaacattgcttctgacatggccgctgatgccaaagaaagcgtcaaacataaagcttacaatgccaaagatgtcgcctctgagaaggcgcatgattccatgaatgctgcttccggaatgggtagttcagctaggaataaagcatcggatgcttatggttttgcttctgataaagcaagtgatgcgaaagaaattgggaaagacaaagcgtatgatgcttatggatttgtatctgaaaagatgaaccgagcaaggggacgaggcttccaataaagcatccgatgcgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="47326" stop="43946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47026" g_stop="46971" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46970" i_stop="45326" i_length="1645">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45325" g_stop="45228" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="154" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45227" i_stop="44948" i_length="280">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44947" g_stop="44246" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="857" r_length="703" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E705458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47026" e_stop="46971"/>
          <exon e_start="45325" e_stop="45228"/>
          <exon e_start="44947" e_stop="44246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCAGTAAGCTAATTTATTACTCCCTCTATTTATAACATAACATTCATTCAACCCAATTGATTTTTTTATAAATAAGTATGTCTTTGTGTTTGGATACAACTGTTAAAAGGAACAAAACTTTCTCTTTGTCATGTTATACCCGTCTACAATAATAATAATAATAATAATCAAGATGAATTAACGAAAATTTTCTTGTTTACACTTGTAAAACTAGTTACGAGTACTATGTCAACTTTTATAAAAAGTTTCTTTAAAGGCTAAATTAGTAATTTTCACAAGGAGAAAGGGAACAAGTAATATGGCAGAGGGAGTACTAAAAGGGCGTTGATAAAGATTTTTTTAAAATTAAAATATGCGAAATATCCTCGAAGCGTTTGCAGAAAAAATATGAACTGAAAGTTATATTTATGTTTACTTTAAAAAAAAAGGAACACAAAACTGCGGAAAAATTAGATTTATACTTAATTAAAGTTGTCTTAGAGAGTACGAATAATATTAGGGTAAAAGCCAGAAAAATATGGTTAAACCAAAAATGCCTTTAAGGTTGTTGGTTCAAAACTGTTTCTGGCTTATAAATATTTGCTTTATAAGCATTTTTCATTTTTATCAAATGCATAAAAGTAACCCAAAAAAAAAACAAGTATGAATTTGTTTGACCAACGTATAAACTTTTAGCTATTGCCACAAAAATTAAGTGTAATAATATCTTTTTACAAATAATTTAGATTAAATATAATGTTTTTATCACTACAACAAAAATAACTTTAAGCGATAAATATTTATATTAATAAAGAGGGCTAATTGTCACGAATATTGTTGAAGTTTTACGAGCATATCAAAGAATGTTGAATTTTAATTGCAACTAAAAATATATAATTAGCGGCAATTAACTTAATTGCCGCTAACTGATATTTTTTATGTTAATGTAGTGTATGTAAGTTTCCCTTTATCCTTCTTTGCTATCTTCGATGAGTCTCTGCCTTATTTGAGCAAGTGATACTCTACAAATCTTTTTGGGCTCGTAGACATAACATTTGGATGCCTTTTTACAAAACTAGTCCCTAGCTAAATGTAGGTTCAAAATTTGTATCTTTCTCTAGGATACACTCTTAAGACAGTGGATATAGAATCTATTTTGAGCACTGTTCAACATGACCCTTGATTTGCATAGATAGAGTCTCCATTGTCAACCTTTTGTGATTGTAACATTAAAATAGGTAGTAGCTCATGGCTTTTTCGTTGTATGACGATCAATTAATTCTTTGAGAAATCTATTCTTAAGTGATCGAAAAAATTTCAAAATGGAGGTAATTGATAAACAAGTTTTTACAAATTTCATTTCCCCTTTTATAAATGGACAAGTGTAAGTGTCATACAATTTATTCGGAAAACCTTTGAAAGAAACTCAAACATATCCGAAGCATTTTCAGGTGAAGGTTTGAAACATTTTATTTGAATTGTTTAGGCAAATGTTGGTTACTTCTTGTTACGTACGCTTTTACAACAAGTGAATACTGTAGTAGTTTGTTTCATTATCGGACATCGCCTTCTGTTCAAATGTCGATCAATCAGTTCTAAATTGGGCGCAGGTCTCTGTAAGTACGCTAATCTAAATAACTATTTGTGGGATTACCACTCTTATTTTTAGGCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATGGTACCTATTCGTCTTGTCTTCAAGCTTTGTTTGGGTGGACTTATTTTAAGTATTTTTTTTTGTGCGAAAAGTCATTTTTAACACTTTTCTAGTGTTTGGGTAAAGCAAGCAAGTGTTTGCACTTGTTTTCAAGTCAGAACAATACAAATAAGTCGAAGTCAAGAACTTAGATTCTTTAACTTATGAACTATAAGCCCATCCAGACACGCTCTTCTCTACAAGAAACCGAGAGACAACTTGTATTGCAAAGAGTTACTAATAATCAGATGTTCTTTTGCAGAAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAA-GGGACGAGGCTTCCAATAAAGCATCGGATGCGTATG</genome_strand>
        <mrna_strand>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG........................................................................................................................................................................................................................................................................................AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGGACGAGGCTTCCAATAAAGCATCCGATGCGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="55359" stop="54313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55059" g_stop="54613" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55059" e_stop="54613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTTCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAGTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTTGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCCATTTAATTTAGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="55360" stop="54465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55060" g_stop="54739" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55060" e_stop="54739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTTCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAGTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="55360" stop="54465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55060" g_stop="54755" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55060" e_stop="54755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTTCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAGTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGAAACAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365227" ref_strand="+" ref_description="SGN-E365227 [cLPT-16-C11]">
      <seq>acatctccaaaagatcttttgatagagaaaagatccatcaaaaaacagctggagaaaattggggagggtgatccaccaaaaaggaaaatcttactgttctttctgagtcttctcaacaaaaatggcaaatctattgtggcagagcacacagagaatgaatctctgcagcatgaagactcccttgaatttgaagtggaatctcgtctgaaatgtaattataatgatgctcaaagggatatcttcaacggctctcgacttccggatgagttcaaatgtcctttatcatcaagactaatgtacgatcccgttgtcattgcttctgggcaaacatatgaaagattttggattgaaaaatggtttgctcaaggtaatgatacatgtccaaaaaccaaaaggaaattggttcatttgtcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="66138" stop="67156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66438" g_stop="66856" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E365227" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66438" e_stop="66856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGGATCTCTGCAGCATGAAGACTCTCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGAGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTATGATCCCGTTGTCATTGCTTCTGGACAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</genome_strand>
        <mrna_strand>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGAATCTCTGCAGCATGAAGACTCCCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGGGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTACGATCCCGTTGTCATTGCTTCTGGGCAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371716" ref_strand="+" ref_description="SGN-E371716 [TUS-30-C9]">
      <seq>tctaaagaagctattgctataatcgaagtgttgtcccgccaccaaaactgtcaccataaaattaccatgtctggtgcactacctattctcctggagattcttgatgcccacagtagagaattgcaggaatcagccatcaaaatattatgtaacatgtcaggaagtagcaaaattggttccttgattgcaccttcagagttggtcccaaaattggttccttttcttgaagatacagcactcgcaagaaattgtgttatcattttgcatagtttgtgcaacaaagaagatgctagaattgctatagctgaaactgatggatgcattgcagcagttgtgaaactgcttgagcgtgagagtcgcaaggaccaggaacatgctgtggattttcttctttctttatgccttcaacgggttcaatattgtcaactggtaatggatgaaggtgtcatccctgaactcgtctctgtatctattaatggaaacaacaaagcaaaggcaatggctttggagttgctgagactgctgaagggggaatttagtgatactgtagaatcttacgaaccgganatcgacattcctaaaccccctacctctgactttactcaacagaaatctcattccgaaggaacaggaatttttgggaaatttttctcaaaacgtagttcgactactgccaaaaggataaatagaaagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67523" stop="68820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67823" g_stop="68520" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E371716" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67823" e_stop="68520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATG</genome_strand>
        <mrna_strand>TCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGANATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282877" ref_strand="+" ref_description="SGN-E282877 [cLER-15-N3]">
      <seq>tctaaagaagctattgctataatcgaagtgttgtcccgccaccaaaactgtcaccataaaattaccatgtctggtgcactacctattctcctggagattcttgatgcccacagtagagaattgcaggaatcagccatcaaaatattatgtaacatgtcaggaagtagcaaaattggttccttgattgcaccttcagagttggtcccaaaattggttccttttcttgaagatacagcactcgcaagaaattgtgttatcattttgcatagtttgtgcaacaaagaagatgctagaattgctatagctgaaactgatggatgcattgcagcagttgtgaaactgcttgagcgtgagagtcgcaaggaccaggaacatgctgtggattttcttctttctttatgccttcaacgggttcaatattgtcaactggtaatggatgaaggtgtcatccctgaactcgtctctgtatctattaatggaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67523" stop="68608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67823" g_stop="68308" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E282877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67823" e_stop="68308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAAC</genome_strand>
        <mrna_strand>TCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371715" ref_strand="+" ref_description="SGN-E371715 [TUS-30-C9](-)">
      <seq>aaattggttccttttcttgaagatacagcactcgcaagaaattgtgttatcattttgcatagtttgtgcaacaaagaagatgctagaattgctatagctgaaactgatggatgcattgcagcagttgtgaaactgcttgagcgtgagagtcgcaaggaccaggaacatgctgtggattttcttctttctttatgccttcaacgggttcaatattgtcaactggtaatggatgaaggtgtcatccctgaactcgtctctgtatctattaatggaaacaacaaagcaaaggcaatggctttggagttgctgagactgctgaagggggaatttagtgatactgtagaatcttacgaaccggaaatcgacattcctaaaccccctacctctgactttactcaacagaaatctcattccgaaggaacaggaatttttgggaaatttttctcaaaacgtagttcgactactgccaaaaggataaatagaaagtgatgcggtttgaagatttttgtatgataggatgtgtataatttcacaggttaatctagtttttgttagggagaggcatagacagtaagcatttatattgttatagctgcttgagagttgggatagaaggtgtaattattgttgttgtatctagtttttgtttgtatttaattgatttcactggacaacatattcaggtgtatagtgtattttgtatgtacaaatatgataaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="67730" stop="69060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68030" g_stop="68763" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E371715" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68030" e_stop="68763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTGTATGTACAAATATGATAAATTTTCAAAGAGATGG</genome_strand>
        <mrna_strand>AAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTGTATGTACAAATATGATAAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546925" ref_strand="+" ref_description="SGN-E546925 [TUS-70-I17](-)">
      <seq>ccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgttcttcgtacaagaggacctaggagaatgcattctgccatgcactctatcccctngtcttcaatccaggagggtggcagtgctccaacaccctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagagatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgttggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaaattttcagctagtggcagcagttgatccatctcacaatataccagtcgcagaacaagaaaaagtaattttacagtttggaaaaattgggaaagacatcttcaccatggactaccgctatccactttctgctttccaagcttttgcaatctgcttgagcagctttgacacgaaaccagcctgtgaatgatttcgtgcagattgcaaatcaagataagctccctttcttctcttttgttgcttagtaatgttccaaattcatgtagagtccctgagaaagttctcaatgcatggccctctgtataaatgagaatattcgttgtgccctgtgccagtttctccaatagcattctcatgtttactgtttccttgtactaatattatccttaatcttttaaatttgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71359" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71059" g_stop="70337" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="786"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E546925" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71059" e_stop="70337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACA-CCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAGCCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCTTTTCTTCTCTTTGGTTGCTTAGTAATGTTCCAAATTCATGTAGAATCCCTGAGGAAGTTCTCAACGCAT-GACCTTTGTATAAATGAGAATATTCGTTGTGCCATGTGCCAGTTTCTCCAATAGCATTCTCAT</genome_strand>
        <mrna_strand>CCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTTCTTCGTACAAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTNGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGAGATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGTTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCCTTTCTTCTCTTTTGTTGCTTAGTAATGTTCCAAATTCATGTAGAGTCCCTGAGAAAGTTCTCAATGCATGGCCCTCTGTATAAATGAGAATATTCGTTGTGCCCTGTGCCAGTTTCTCCAATAGCATTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261277" ref_strand="+" ref_description="SGN-E261277 [cLEG-68-H24]">
      <seq>gagagggataaactattgttgtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaactgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaacctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgtccttcgtaccagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagacatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgctggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaattttcagctagtggcagcagttgatccatctcacaatataccagtcgcagaacaagaaaaagtaattttacagtttggaaaaattgggaaagacatctttcacctggactaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71721" stop="70274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71421" g_stop="71300" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71171" g_stop="70574" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="719" r_length="597" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E261277" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71421" e_stop="71300"/>
          <exon e_start="71171" e_stop="70574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGC</genome_strand>
        <mrna_strand>GAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTG-AAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTTCACCTGGACTACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689042" ref_strand="+" ref_description="SGN-E689042 [t3_tus_55_N11]">
      <seq>tgagagggataaactattgttgtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaactgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaacctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgtccttcgtaccagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagacatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgctggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaaattttcagctagtggcagcagttgatccatctcancatataccagtcgcagaacaagaaaaagtaattttacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71722" stop="70313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71422" g_stop="71300" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71171" g_stop="70613" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="682" r_length="559" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E689042" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71422" e_stop="71300"/>
          <exon e_start="71171" e_stop="70613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTT</genome_strand>
        <mrna_strand>TGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCANCATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551212" ref_strand="+" ref_description="SGN-E551212 [TUS-55-N11]">
      <seq>tgagagggataaactattgttgtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaactgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaacctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgtccttcgtaccagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagacatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgctggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaaattttcagctagtggcagcagttgatccatctcancatataccagtcgcagaacaagaaaaagtaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71722" stop="70319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71422" g_stop="71300" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71171" g_stop="70619" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="676" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E551212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71422" e_stop="71300"/>
          <exon e_start="71171" e_stop="70619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTA</genome_strand>
        <mrna_strand>TGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCANCATATACCAGTCGCAGAACAAGAAAAAGTAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361184" ref_strand="+" ref_description="SGN-E361184 [cLPP-13-J12]">
      <seq>gtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaattgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaatctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgttcttcgtacaagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccacttgcaatagcaaaggagtcagctatggatatcagctcctctggcatttcaaggtcagcagtaacggcgacttctcaagagatacttgtgctaaaaaacaaggctcctaggtggcatgaacaattgcagtgttggtgcttaaattttaaaggccgtgttacagttgcttctgtgaaaaattttcagctagtggcagcagttgatccatctcacaatataccagtcgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71701" stop="70338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71401" g_stop="71300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71171" g_stop="70638" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="636" r_length="534" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E361184" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71401" e_stop="71300"/>
          <exon e_start="71171" e_stop="70638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGA</genome_strand>
        <mrna_strand>GTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAATTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAATCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTTCTTCGTACAAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGAGATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGTTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364195" ref_strand="+" ref_description="SGN-E364195 [cLPP-16-D8]">
      <seq>gtctgccaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttttctcgagctagcaatatgtatgccggtaaattgaggtctaactttcttgggaccaagttctccatacatgatagccaacctccaagtgatgcagccattcaacaatctggtcgtctcagtcggagatttcatgcaaaacaagtttctccaagagttcctgcgtgcaactatagagtagctaccatttcgtatgaactcaatgttcttcgtacaagaggacctaggagaatgcattctgccatgcactctatccccttgtcttcaatccaggagggtggcagtgctccaacacctaaatcattcccacaatcttttgatgagaagtcattttctgcaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="71701" stop="70567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71401" g_stop="71300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71171" g_stop="70867" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="407" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E364195" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71401" e_stop="71300"/>
          <exon e_start="71171" e_stop="70867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAGGCAAGTTCAATCAAATTTCCAATTATATTTCCTTTTCTCACTCCTCGTCGACCCTTCAGATTGGCAGGAGGCAGAGAAAAGAATCTAATTTCCATTTTATATAATGTTTGAGAACAATTTTTGACCAGGTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCAC</genome_strand>
        <mrna_strand>GTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAATTGAG................................................................................................................................GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAATCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTTCTTCGTACAAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235110" ref_strand="+" ref_description="SGN-E235110 [cLEL-6-H20](-)">
      <seq>ggcaccagggagattgttaagactcctgaggaatgtggtaggcttacctttcccatttcactgaaacagccgggtccccgtgaatccccaatccagtgctttattaaacgggacagagctaattcagtttatcgtctctactttggcatgattccatctgaggatgagagggataaactattgttgtctgccaaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgatgacagatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="72193" stop="71035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71896" g_stop="71828" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71827" i_stop="71739" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71738" g_stop="71651" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="157" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71650" i_stop="71430" i_length="221">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71429" g_stop="71335" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E235110" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71896" e_stop="71828"/>
          <exon e_start="71738" e_stop="71651"/>
          <exon e_start="71429" e_stop="71335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAGGTAATCACCTTAGTCTATTTTACTTTCCTTTCTATGTATGTTTATGATGTTGATTGATATTAATAGAGAACTTTTACCGTTTAAACCAGCCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCATGTAAGTAATATCCTCTGCCTATCCTGTTTGTGCTGTAAAGATTTTAAGATCCTACTTTAATGGGGAACTTGCACTTAGGCTGATGTACATTCAAGTTAGTACACCAGATAGAAAATTCACAACCTTTTAGAACTTCTAGTGATGTTTGTGGTCAATCTTTTTCATCGGAAATTCTTCCAAGTCAATGAAAGATGCATAACTGATATTTTACTTCACGACAGCTGAGGATGAGAGGGATAAACTATTGTTGTCTGCC-AAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTG-CAGATGATTTT</genome_strand>
        <mrna_strand>GGCACCAGGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAG.........................................................................................CCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCAT.............................................................................................................................................................................................................................CTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGATGACAGATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234630" ref_strand="+" ref_description="SGN-E234630 [cLEL-6-H20](-)">
      <seq>ggcaccagggagattgttaagactcctgaggaatgtggtaggcttacctttcccatttcactgaaacagccgggtccccgtgaatccccaatccagtgctttattaaacgggacagagctaattcagtttatcgtctctactttggcatgattccatctgaggatgagagggataaactattgttgtctgccaaaaaaaatcagaagggcaacaaacacagactttgtgatatcatttgttgcagatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="72193" stop="71035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71896" g_stop="71828" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71827" i_stop="71739" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71738" g_stop="71651" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="157" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71650" i_stop="71430" i_length="221">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71429" g_stop="71335" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="253" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E234630" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71896" e_stop="71828"/>
          <exon e_start="71738" e_stop="71651"/>
          <exon e_start="71429" e_stop="71335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAGGTAATCACCTTAGTCTATTTTACTTTCCTTTCTATGTATGTTTATGATGTTGATTGATATTAATAGAGAACTTTTACCGTTTAAACCAGCCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCATGTAAGTAATATCCTCTGCCTATCCTGTTTGTGCTGTAAAGATTTTAAGATCCTACTTTAATGGGGAACTTGCACTTAGGCTGATGTACATTCAAGTTAGTACACCAGATAGAAAATTCACAACCTTTTAGAACTTCTAGTGATGTTTGTGGTCAATCTTTTTCATCGGAAATTCTTCCAAGTCAATGAAAGATGCATAACTGATATTTTACTTCACGACAGCTGAGGATGAGAGGGATAAACTATTGTTGTCTGCC-AAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTT</genome_strand>
        <mrna_strand>GGCACCAGGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAG.........................................................................................CCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCAT.............................................................................................................................................................................................................................CTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546926" ref_strand="+" ref_description="SGN-E546926 [TUS-70-I17]">
      <seq>ggaaaactttgatagatacgctcacagagaagcccctttcgtcttcctagctcctgaaatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgttatttagcttcatgtcggctctgcttttggttttcgtcggagatagtaccaaaatgctacaagatcgcacattttgattgttttttcgctttcttattccaagggaagttgtagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagatggtatagggaatatatcaaggaggggaacagaaagaaagcattggagcaacagaacccggtcacatatagtccctgatgtggccctttctgatcaaattgaacaagggcaatgggcaaatttaccaccggaacttctttttgatatcatccgtagggttgaagagagtgaggcatcatggcctgctcgatccgcccttctcttttgtgcatctgtttgcaaatcgtggagggaaattaccaaggagattgttaagactcctgaagaatgtggtaggcttacctttccatttcactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73312" stop="71532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73012" g_stop="72753" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85">
            <donor d_prob="0.180" d_score="0.96"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72667" g_stop="72572" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="356" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72571" i_stop="72205" i_length="367">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72204" g_stop="71832" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="728" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E546926" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73012" e_stop="72753"/>
          <exon e_start="72667" e_stop="72572"/>
          <exon e_start="72204" e_stop="71832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGGAATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAA</genome_strand>
        <mrna_strand>GGAAAACTTTGATAGATACGCTCACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGAAATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTATTTAG.....................................................................................CTTCATGTCGGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCTACAAGATCGCACATTTTGATTGTTTTTTCGCTTTCTTATTCCAAG...............................................................................................................................................................................................................................................................................................................................................................................GGAAGTTGTAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTTTTGATATCATCCGTAGGGTTGAAGAGAGTGAGGCATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGAAATTACCAAGGAGATTGTTAAGACTCCTGAAGAATGTGGTAGGCTTACCTTT-CCATTTCACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338587" ref_strand="+" ref_description="SGN-E338587 [cTOE-15-G2]">
      <seq>aaaactttgatagatacgcacacagagaagcccctttcgtcttcctagctcctgacatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgtttcttagggaagttgcagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagatggtatagggaatatatcaaggaggggaacagaaagaaagcattggagcaacagaacccggtcacatatagtccctgatgtggccctttctgatcaaattgaacaagggcaatgggcaaatttaccaccggaacttcttcttgatatcatccgtagggttgaagagagtgagttatcatggcctgctcgatccgcccttctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73310" stop="71625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73010" g_stop="72753" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72205" i_length="548">
            <donor d_prob="0.180" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72204" g_stop="71925" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="538" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E338587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73010" e_stop="72753"/>
          <exon e_start="72204" e_stop="71925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTG</genome_strand>
        <mrna_strand>AAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363367" ref_strand="+" ref_description="SGN-E363367 [cLPP-4-J4]">
      <seq>gaaaactttgatagatacgctcacagagaagcccctttcgtcttcctagctcctgaaatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgttatttagcttcatgtcggctctgcttttggttttcgtcggagatagtaccaaaatgctacaagatcgcacattttgattgttttttcgctttcttattccaagggaagttgtagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagatggtatagggaatatatcaaggaggggaacagaaagaaagcattggagcaacagaacccggtcacatatagtccctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73311" stop="71752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73011" g_stop="72753" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85">
            <donor d_prob="0.180" d_score="0.96"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72667" g_stop="72572" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="355" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72571" i_stop="72205" i_length="367">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72204" g_stop="72052" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="508" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E363367" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73011" e_stop="72753"/>
          <exon e_start="72667" e_stop="72572"/>
          <exon e_start="72204" e_stop="72052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATG</genome_strand>
        <mrna_strand>GAAAACTTTGATAGATACGCTCACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGAAATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTATTTAG.....................................................................................CTTCATGTCGGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCTACAAGATCGCACATTTTGATTGTTTTTTCGCTTTCTTATTCCAAG...............................................................................................................................................................................................................................................................................................................................................................................GGAAGTTGTAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361745" ref_strand="+" ref_description="SGN-E361745 [cLPP-12-N18]">
      <seq>gaaaactttgatagatacgctcacagagaagcccctttcgtcttcctagctcctgaaatttttccttcaatttgttggcggaattaacggcggtttttcggtggtggtgccactggtgtttccggcgacatgacatgaagtctaaagcgtcgccgatccagtgttccacctcattcgccgcgttttttccttcttcgatctctgcatcccgcagcttgctttcaacgatttcatcttctttgtaactcgtgttatttagcttcatgtcggctctgcttttggttttcgtcggagatagtaccaaaatgctacaagatcgcacattttgattgttttttcgctttcttattccaagttgatgtgattgatagaaatgtctttgaagagcattgttcgtgagctgagggagatgaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="73311" stop="71831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73011" g_stop="72753" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85">
            <donor d_prob="0.180" d_score="0.96"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72667" g_stop="72572" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="355" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72571" i_stop="72194" i_length="378">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72193" g_stop="72131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E361745" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73011" e_stop="72753"/>
          <exon e_start="72667" e_stop="72572"/>
          <exon e_start="72193" e_stop="72131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAGGTTTTCTCCTACCCTTTTCTGTGTTTTGATGCATTTATGTTCTATGGATATATTTCATTTTCATAATCTCTTCTTCTCTTCCTAGCTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGGGTATTTTTTTGCCTTTGTAAAGAACCTCACATTTTAAATTTCTGTTTTTTTTAAAAAAAAAAAAATAGTGGCGGAATCTCAGAATTCCGATTTTGAGTGCTGAGGTTTAGATTTTGAAACTTGGGATATGCTTGAAATGAGATAAAGCACCTGTTCTTACATTCTTGTTGATCTTTTTTTCTCCCTCAGAAAAGCTATGGATTTTGATCAAAATATAGATAATTTCTAGTTTGTCTTGAAGGCCATATTTTGGATAGGAATTATATGGGTCCGAGTAGAGCAGAATGTTTGAAATTGAGGTTTCGATAATTGGTTGATGCTGTGGTTAAAAGGCAAAGTTCTAATTGCTTTACCCTTCCATTTGAAGGGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGAT</genome_strand>
        <mrna_strand>GAAAACTTTGATAGATACGCTCACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGAAATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTATTTAG.....................................................................................CTTCATGTCGGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCTACAAGATCGCACATTTTGATTGTTTTTTCGCTTTCTTATTCCAAG..........................................................................................................................................................................................................................................................................................................................................................................................TTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244074" ref_strand="+" ref_description="SGN-E244074 [cLEE-1-J14]">
      <seq>ttaggttggctgtaaggggtgcccctgtaaaattgaatggagtaggtggtttgtctgggaaatctggagtgtacacacccttaatgttgaagtaatgagactgaagaagtgcagtttgtggcatgataaaggaaatgttgttcagagatgctgtaagcctagttccatttagacaggtgggacaaggattaattcctaggccaactgtaaacaagaggtgtcgatcaacatttaggggaacgtttgctggatatttgggagtatttaggcttttgagtttaaagttatagctcaaagcaaagtctgagtcattttgtgcaggcaaggtaggaagttttggaatcacggtttctgggattcccttgtactggaaaatagcagtggcagtcttgttatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87074" stop="86076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86774" g_stop="86376" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E244074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86774" e_stop="86376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</genome_strand>
        <mrna_strand>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575955" ref_strand="-" ref_description="SGN-E575955 [35660]">
      <seq>ttcaattttacagggcaccacttacagccaacctaaggacaaatgtaggcactaggatcagtaaaattgctttcaattccactgttgaaatagtagtccaagacaccaacttattgtcggtggaatcacatcctttccatctccatggctataacttctttgtagttggaactggcatcggaaactttgaccccaaaaaagatccagcaaaatacaacttgatcgatcctatagaaagaaatactgttggtgttcctactggcggttggactgctattcgattcagggctgataatccaggggtctggtttttccactgtcatctggagttgcatacaggctggggactgaaaacagcatttttagtggaagatggaccaggatcagatcataatgttctgcctccaccaaaggatcttccaacctgctaatttcacaaggctttctgttttcaatttgcttcatgcaccataagctaaggaagcaaaggcttcaaggatcatacaaatttagaaaggaatttgagctgtcataaacttccacatataaaaatgtggttttggattgtgttttttcttttgttgtcaaattgaattgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86438" stop="87794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86738" g_stop="87038" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87039" i_stop="87128" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87129" g_stop="87281" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87282" i_stop="87342" i_length="61">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87343" g_stop="87494" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="600" r_length="147" r_score="0.730"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E575955" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575955" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86738" e_stop="87038"/>
          <exon e_start="87129" e_stop="87281"/>
          <exon e_start="87343" e_stop="87494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTTTACAGGGGCACCCCTTACAGCCAACCTAAGGACAAATGTAGGCACTAGGATCAGTAAAATTGCTTTCAATTCCACAGTTGAAATAGTAATCCAAGACACCAACTTGTTATCGGTGGAATCACATCCTTTCCATCTCCATGGCTATAACTTCTTTGTGGTTGGAACTGGCGTAGGAAATTTTGACCCCAAAAAAGATCCAGCAAAGTATAACTTGATCGATCCTATAGAAAGAAATACTGTTGGTGTTCCAACTGGTGGTTGGACTGCTATTCGATTCAGGGCTGATAATCCAGGTACCTAGCTAGTTTTCAACCAAGTTTAGTAAATGAACTTATTGCTATTGTTTCAAAACTTTTTCTTTACATATCCAATTTTGTATGAAGGGGTCTGGTTTTTCCACTGTCATCTGGAGTTGCATACAGGCTGGGGACTGAAAACAGCATTTTTAGTGGAAGATGGACCAGGATCAGATCATAATGTTCTGCCTCCACCAAAGGATCTTCCAACTTGCTAACTTCACAAGGCTTTCTGTTTTCTGTACAAATGGATTTTTTGTGCAGGTTTTCAATTCTCTTCATGCACCATAAGCTAAGGAAGCAAAGGCTTCGAGGATCATATAAATTTAGAAAGGAGTTTCCATCCAGAAAATTAAAGGAATTCGTTTGTAATTTGAGCTGTCATAAACTTCCACACAAAAAAATGTGGTTTTGGATTGTTTTTTTTTCTTTTGTTGTCAATTTGGATTGTGT</genome_strand>
        <mrna_strand>TTCAATTTTACA-GGGCACCACTTACAGCCAACCTAAGGACAAATGTAGGCACTAGGATCAGTAAAATTGCTTTCAATTCCACTGTTGAAATAGTAGTCCAAGACACCAACTTATTGTCGGTGGAATCACATCCTTTCCATCTCCATGGCTATAACTTCTTTGTAGTTGGAACTGGCATCGGAAACTTTGACCCCAAAAAAGATCCAGCAAAATACAACTTGATCGATCCTATAGAAAGAAATACTGTTGGTGTTCCTACTGGCGGTTGGACTGCTATTCGATTCAGGGCTGATAATCCAG..........................................................................................GGGTCTGGTTTTTCCACTGTCATCTGGAGTTGCATACAGGCTGGGGACTGAAAACAGCATTTTTAGTGGAAGATGGACCAGGATCAGATCATAATGTTCTGCCTCCACCAAAGGATCTTCCAACCTGCTAATTTCACAAGGCTTTCTGTTTTC.............................................................AATTTGCTTC-ATGCAC-CATAAGCTAAGGAAGCA-AAGGCTTCAAGGATCATACA-AATTTAGAAAGGAATTTGAGCTGTCATAAACTTCCACATATAAAAATGTGGTTTTGGATTG-TGTTTTTTCTTTTGTTGTCAAATTGAATTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348770" ref_strand="+" ref_description="SGN-E348770 [cTOF-29-C12]">
      <seq>ttcgaacttattgtagaggcacaatatccagtttaagtagttcagtggacaacaaggactgcacagagcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87816" stop="90492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88116" g_stop="88331" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="414" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="466" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90192" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="580" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E348770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88116" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGAC</genome_strand>
        <mrna_strand>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328700" ref_strand="+" ref_description="SGN-E328700 [cTOC-23-E14]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggntgcaaaactctaaacaagggtcctgatcccacaaaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87882" stop="91525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88182" g_stop="88331" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91225" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="717" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E328700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88182" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGT</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGNTGCAAAACTCTAAACAAGGGTCCTGATCCCACAAAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328090" ref_strand="+" ref_description="SGN-E328090 [cTOC-22-H21]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctgtacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87882" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88182" g_stop="88331" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E328090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88182" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTGTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327937" ref_strand="+" ref_description="SGN-E327937 [cTOC-22-H19]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87882" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88182" g_stop="88331" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E327937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88182" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202918" ref_strand="+" ref_description="SGN-E202918 [cLEB-1-D16]">
      <seq>gcacgaggagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87891" stop="91093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88186" g_stop="88331" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="233" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="344" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="396" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="534" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90793" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="612" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E202918" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88186" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACT</genome_strand>
        <mrna_strand>GCACGAGGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281532" ref_strand="-" ref_description="SGN-E281532 [cLEL-1-J23](-)">
      <seq>gcacgaggagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaccatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87891" stop="89774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88186" g_stop="88331" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="233" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89474" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="341" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E281532" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281532" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88186" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAAT</genome_strand>
        <mrna_strand>GCACGAGGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGACCATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746813" ref_strand="+" ref_description="SGN-E746813 [GI|47104469]">
      <seq>aaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatccaagatttacgatggaacaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87888" stop="92820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88188" g_stop="88331" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="342" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="394" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="532" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="631" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="729" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="837" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="919" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92166" g_stop="92520" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1274" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1275" polyA_stop="1284"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E746813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1274</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88188" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAA</genome_strand>
        <mrna_strand>AAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345713" ref_strand="+" ref_description="SGN-E345713 [cTOF-18-P9]">
      <seq>aaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaccctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87889" stop="91526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88189" g_stop="88331" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="341" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="393" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="531" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="630" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91226" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="710" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E345713" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88189" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTC</genome_strand>
        <mrna_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCAC-AACCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310063" ref_strand="+" ref_description="SGN-E310063 [cLEZ-8-E22]">
      <seq>aaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87889" stop="90518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88189" g_stop="88331" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="341" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="393" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="531" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E310063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88189" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343897" ref_strand="+" ref_description="SGN-E343897 [cTOF-12-D8]">
      <seq>aaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggnttaaaaggttgcaaaactctaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87890" stop="91501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88190" g_stop="88331" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="229" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="340" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="392" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="530" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="629" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91201" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="685" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E343897" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88190" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAA</genome_strand>
        <mrna_strand>AAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGNTTAAAAGGTTGCAAAACTCTAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333388" ref_strand="+" ref_description="SGN-E333388 [cTOD-20-O4]">
      <seq>aagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagttttccatgctcttttacagatcactcttgataagaagaacctgtcaacagaactcacagttaaaaatactgancaacagccatttttcattcactactgcactgcatacttacttcagcgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87891" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88191" g_stop="88331" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="391" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="530" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="630" r_length="100" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E333388" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88191" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAG-TTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCA-TTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTTCCATGCTCTTTTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGAACCTGTCAACAGAACTCACAGTTAAAAATACTGANCAACAGCCATTTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296635" ref_strand="+" ref_description="SGN-E296635 [cLET-39-A5]">
      <seq>aagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87891" stop="90518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88191" g_stop="88331" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="391" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="529" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E296635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88191" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728505" ref_strand="+" ref_description="SGN-E728505 [LA18AC01]">
      <seq>agagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgntctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87892" stop="92221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88192" g_stop="88331" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="227" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="338" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="390" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="528" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="627" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="725" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="833" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="91846" g_stop="91921" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="909" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E728505" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88192" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAAT</genome_strand>
        <mrna_strand>AGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGNTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367592" ref_strand="+" ref_description="SGN-E367592 [cLPT-7-N20]">
      <seq>gagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtggaggagaaacctgttgttactgtggagctaagggatgggccttatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87893" stop="90478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88193" g_stop="88331" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="389" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90178" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E367592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88193" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</genome_strand>
        <mrna_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367593" ref_strand="+" ref_description="SGN-E367593 [cLPT-7-N22]">
      <seq>gagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtgattttgccatcaaatagaagatggcagcattgtctatgacctgggcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagagtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtatacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87893" stop="90072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88193" g_stop="88331" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89772" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="374" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E367593" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88193" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCT</genome_strand>
        <mrna_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTGATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGGCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGAGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTATACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303935" ref_strand="+" ref_description="SGN-E303935 [cLEX-4-D19]">
      <seq>agaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87894" stop="90424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88194" g_stop="88331" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="225" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="336" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="388" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90124" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="434" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E303935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88194" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAA</genome_strand>
        <mrna_strand>AGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324332" ref_strand="+" ref_description="SGN-E324332 [cTOC-6-E9]">
      <seq>gaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaagaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87895" stop="90518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88195" g_stop="88331" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="335" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="387" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="525" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E324332" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88195" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>GAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAAGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458981" ref_strand="+" ref_description="SGN-E458981 [cPRO-33-A23]">
      <seq>aaaaagagaacaattttccagttgaaagcaaaaaagactaacctttttgcaaatcctttcgtaatcttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagttaatcgatactcagggatgacatttgcaagtgtgaagtctactgaagggttgggaaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgcttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacgtgagttggacccttgttagttctgaaaatgtggaggagaaacctgttgttactgtggagctaagggatggcccttacagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctctcaacggaactcacagttaaaaatactgacaacaaaccattttcattcactactgcactgcatacttacttcagcgcttctgtaaaggtgcatcagttagtggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcnagggaaagaggaaagggatgtggtgacatttcctggatttgtggactgtgtttatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87885" stop="91974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88199" g_stop="88331" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="151" r_length="135" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="238" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="349" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="401" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="539" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="638" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="734" r_length="96" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91674" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="779" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E458981" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88199" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTGAAAGCAAAAAAGACTTAC-TTTTTGCAAATCC-TTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGA</genome_strand>
        <mrna_strand>TCCAGTTGAAAGCAAAAAAGACTAACCTTTTTGCAAATCCTTTCGTAATCTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTTAATCG.................................................................................................................................................................................................................................ATACTCAGGGATGACATTTGCAAGTGTGAAGTCTACTGAAGGGTTGGGAAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGCTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACGTGAGTTGGACCCTTGTTAGTTCTGAAAATGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGCCCTTACAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTCTCAACGGAACTCACAGTTAAAAATACTGACAACAAACCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAA-AGGTGCATCAGTTAGTGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCNAGGG-AAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623735" ref_strand="+" ref_description="SGN-E623735 [88831]">
      <seq>aatcctttgtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcgggcgagtaaaccgatactcaggatgactttggcaagtgtaaatctactgaagggttgggaaatttacccaaggtcgtttggacttctcctcatggaagtgaggctgagctatatcttatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaattcagcagcacggatttggaaggaacatgaattggtcccttgttagttctgaaaatgtggaggagaaacctgttgttactgtggagctaagggatggcccttacagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctctcaacggaactcatagttaaaaatactgacaacaaaccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttagtggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaggaggaaagggatgtggtgacatttcctggatttgtagactgtgttatcttgatgcacctagcgagttacaactagataatggttgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87933" stop="92013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88233" g_stop="88331" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="185" r_length="85" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="297" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="349" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="487" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="586" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="684" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91713" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="766" r_length="82" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E623735" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88233" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTC-GGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATC-TATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGA</genome_strand>
        <mrna_strand>AATCCTTTGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGGCGAGTAAACCG.................................................................................................................................................................................................................................ATACTCAGG-ATGACTTTGGCAAGTGT-AAATCTACTGAAGGGTTGGGAAATTTACCCAAGGTCGTTTGGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATTCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGTTCTGAAAATGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGCCCTTACAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTCTCAACGGAACTCATAGTTAAAAATACTGACAACAAACCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAGTGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAGGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTGACATTTCCTGGATTTGTAGACTGTG-TTATCTTGATGCACCTAGCGAGTTACAACTAGATAATGG-TTGGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291843" ref_strand="+" ref_description="SGN-E291843 [cLET-7-M18]">
      <seq>taattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87942" stop="91473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88242" g_stop="88331" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="340" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="478" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="577" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91173" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="605" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E291843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88242" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATG</genome_strand>
        <mrna_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291980" ref_strand="+" ref_description="SGN-E291980 [cLET-7-M22]">
      <seq>taattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgctttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcaacgcttctgtaacaggtgcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87942" stop="91466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88242" g_stop="88331" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="340" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="478" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="577" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91166" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="598" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E291980" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88242" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCA</genome_strand>
        <mrna_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGCTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAAC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726431" ref_strand="+" ref_description="SGN-E726431 [LA11DB09]">
      <seq>atcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgatatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagaatttgtttgtgttgaaaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87952" stop="92225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88252" g_stop="88331" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="167" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="278" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="330" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="468" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="567" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="665" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="773" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="91846" g_stop="91925" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="853" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E726431" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88252" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCA</genome_strand>
        <mrna_strand>ATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGATATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGAATTTGTTTGTGTTGAAAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248322" ref_strand="+" ref_description="SGN-E248322 [cLEG-1-O19]">
      <seq>caaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87954" stop="91107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88254" g_stop="88331" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="165" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="328" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="466" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90807" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="558" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E248322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88254" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTA</genome_strand>
        <mrna_strand>CAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282147" ref_strand="+" ref_description="SGN-E282147 [cLES-4-G14]">
      <seq>aagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87961" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88261" g_stop="88331" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="158" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="269" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="321" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="459" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="558" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E282147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88261" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409289" ref_strand="+" ref_description="SGN-E409289 [PPI-13-L21]">
      <seq>ctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagttaatcgatactcagggatgacatttgcaagtgtgaaatctactgaagggttgggaaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaattcagcagcacggatttggaaggaacgtgaattggtcccttgttagttctgaaaatgtggaggagaaacctgttgttactgtggagctaagggatggcccttacagccgtgcaatgtgggactatagtttccatgctctttacaagatcacccttgataagaagaccctctcaacggaactcatagttaaaaatactgacaacaaaccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcttcagttagtggtttaaagggttgcaaaactctaaacaaggttcctgatcccacaaaccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87977" stop="91527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88277" g_stop="88331" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="142" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="253" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="305" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="443" r_length="138" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="542" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91146" g_stop="91227" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E409289" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88277" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCG</genome_strand>
        <mrna_strand>CTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTTAATCG.................................................................................................................................................................................................................................ATACTCAGGGATGACATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGAAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATTCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACGTGAATTGGTCCCTTGTTAGTTCTGAAAATGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGCCCTTACAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCCTTGATAAGAAGACCCTCTCAACGGAACTCATAGTTAAAAATACTGACAACAAACCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCTTCAGTTAGTGGTTTAAAGGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335502" ref_strand="+" ref_description="SGN-E335502 [cTOE-2-E20]">
      <seq>cttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87999" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88299" g_stop="88331" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="120" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="231" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="283" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="421" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="520" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E335502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88299" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337340" ref_strand="+" ref_description="SGN-E337340 [cTOE-18-E12]">
      <seq>cttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="87999" stop="91108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88299" g_stop="88331" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88557" g_stop="88643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="120" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="231" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="283" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="421" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90716" g_stop="90808" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="514" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E337340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88299" e_stop="88331"/>
          <exon e_start="88557" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTAC</genome_strand>
        <mrna_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699439" ref_strand="+" ref_description="SGN-E699439 [FA10AD07]">
      <seq>ccgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctacataatggcttgggtgataagatatctatcaaaaaccccaattggtctgatgctgttctatggaacccctctttgaccatggaaacaagctataaagattttgtttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="88254" stop="92215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88554" g_stop="88643" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="201" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="253" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="391" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="490" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="588" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="696" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91846" g_stop="91915" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="766" r_length="70" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E699439" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88554" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTT</genome_strand>
        <mrna_strand>CCGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTACATAATGGCTTGGGTGATAAGATATCTATCAAAAACCCCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCCTCTTTGACCATGGAAACAAGCTATAAAGATTTTGTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473621" ref_strand="+" ref_description="SGN-E473621 [cSTB-33-C24]">
      <seq>tgaagggttgggaaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgcttcccacaatttggacctggcccaatccatcatcacggatttggaaggaacgtgagttggacccttgttagttctgaaaatgtggaggagaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="88293" stop="90441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88593" g_stop="88643" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="162" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="214" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.823" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90079" g_stop="90141" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="277" r_length="63" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E473621" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88593" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCT</genome_strand>
        <mrna_strand>TGAAGGGTTGGGAAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGCTTCCCACAATTTGGACCTGGCCCAATCCATCAT...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACGTGAGTTGGACCCTTGTTAGTTCTGAAAATGTGGAGGAGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734438" ref_strand="+" ref_description="SGN-E734438 [LB12CF11]">
      <seq>ggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaacccctccctgctttttcatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcaggtaagagtgttaagtgatatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="88317" stop="92702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88617" g_stop="88643" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89367" g_stop="89477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="138" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89736" g_stop="89787" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="190" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90079" g_stop="90216" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="328" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="427" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="525" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="633" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="715" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92166" g_stop="92408" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="958" r_length="243" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E734438" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88617" e_stop="88643"/>
          <exon e_start="89367" e_stop="89477"/>
          <exon e_start="89736" e_stop="89787"/>
          <exon e_start="90079" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCT</genome_strand>
        <mrna_strand>GGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCCTCCCTGCTTTTTCATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGGTAAGAGTGTTAAGTGATATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606471" ref_strand="-" ref_description="SGN-E606471 [22415]">
      <seq>ttagttctgaaaatgtggaggagaaacctgttgttactgtggagctaagggatggcccttacagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctctcaacggaactcacagttaaaaatactgacaacaaaccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttagtggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaggaggaaagggatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacaactagataatggctttgggtgatatgatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagttcagattgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagcaatcaactttttggagaaactctcccttgcttttcaatttaaaaaactcacttgagaaaatgattgaaaatggcaatacaaaataaagaataatgttgtatctcacatgacctgcatttcatagcagtttaagagtggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="89813" stop="92690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90113" g_stop="90216" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="203" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="410" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="492" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92166" g_stop="92390" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="718" r_length="226" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E606471" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606471" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90113" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGC-TTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAG-TTAAGAGTGTTAA</genome_strand>
        <mrna_strand>TTAGTTCTGAAAATGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGCCCTTACAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTCTCAACGGAACTCACAGTTAAAAATACTGACAACAAACCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAGTGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAGGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACAACTAGATAATGGCTTTGGGTGATATGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTTCAGATTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGCAATCAACTTTTTGGAGAAACTCTCCCTTGCTTTTCAATTTAAAAAACTCACTTGAGAAAATGATTGAAAATGGCAATACAAAATAAAGAATAATGTTGTATCTCACATGACCTGCATTTCATAGCAGTTTAAGAGTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350202" ref_strand="+" ref_description="SGN-E350202 [cTOS-4-K8]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactggtgcttaaagatacctccccggaaaagaatcaactttttggaagaaacctcccctggcttttcatttaaaagactcacttgagaaaatgattgaaaatggctatacaaataaaagaaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatcccagatttacgatggaacaggaaaaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="89887" stop="92824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90187" g_stop="90216" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92166" g_stop="92524" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="777" r_length="360" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E350202" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90187" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCT-CCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCT-GCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAG-AATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGGTGCTTAAAGATACCTCCCCGGAAAAG-AATCAACTTTTTGGAAGAAACCTCCCCTGGCTTTTC-ATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAATAAAAGAAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCCAGATTTACGATGGAACAGGAAAAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349191" ref_strand="+" ref_description="SGN-E349191 [cTOS-2-G20]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="89887" stop="92796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90187" g_stop="90216" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92166" g_stop="92496" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="748" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E349191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90187" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCA</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353932" ref_strand="+" ref_description="SGN-E353932 [cTOS-10-F22]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctccatcaatcttctctgtatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="89887" stop="92735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90187" g_stop="90216" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90716" g_stop="90814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91146" g_stop="91243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92166" g_stop="92435" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="686" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E353932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90187" e_stop="90216"/>
          <exon e_start="90716" e_stop="90814"/>
          <exon e_start="91146" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCA</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCT-CCATCAATCTTCTCTGTATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287853" ref_strand="+" ref_description="SGN-E287853 [cLES-19-G15]">
      <seq>acaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctnnccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="90915" stop="92696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91215" g_stop="91243" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91630" g_stop="91737" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="137" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91846" g_stop="91927" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92166" g_stop="92393" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="448" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="461"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E287853" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91215" e_stop="91243"/>
          <exon e_start="91630" e_stop="91737"/>
          <exon e_start="91846" e_stop="91927"/>
          <exon e_start="92166" e_stop="92393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCT-CCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTG</genome_strand>
        <mrna_strand>ACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTNNCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433255" ref_strand="+" ref_description="SGN-E433255 [STM-58-A2]">
      <seq>tgtctacatgccaagattggaacagttcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaactctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggcaatacaaaataaagaataatgttgtatctcacatgacctgcatttctttgcagtttaagagtgttcaagtgataatttcatcttctttcccatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91855" stop="92718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91912" g_stop="91927" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92166" g_stop="92417" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="269" r_length="254" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="280"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E433255" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91912" e_stop="91927"/>
          <exon e_start="92166" e_stop="92417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAG-TTAAGAGTGTT-AAGTGATATTTACATCTTCTCTCCCATCA</genome_strand>
        <mrna_strand>TGTCTACA-TGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTTCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACTCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCAATACAAAATAAAGAATAATGTTGTATCTCACATGACCTGCATTTCTTTGCAGTTTAAGAGTGTTCAAGTGATAATTTCATCTTCTTTCCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403104" ref_strand="+" ref_description="SGN-E403104 [PPC-9-L9]">
      <seq>tgaaaatgccaagattggaacagttcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaactctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggcaatacaaaataaagaataatgttgtatctcacatgacctgcatttctttgcagtttaagagtgttcaagtgataatttcatcttctttcccatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="+" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91859" stop="92718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91915" g_stop="91927" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92166" g_stop="92417" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="267" r_length="254" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="278"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="+" ref_id="SGN-E403104" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91915" e_stop="91927"/>
          <exon e_start="92166" e_stop="92417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAG-TTAAGAGTGTT-AAGTGATATTTACATCTTCTCTCCCATCA</genome_strand>
        <mrna_strand>TGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTTCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACTCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCAATACAAAATAAAGAATAATGTTGTATCTCACATGACCTGCATTTCTTTGCAGTTTAAGAGTGTTCAAGTGATAATTTCATCTTCTTTCCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391832" ref_strand="+" ref_description="SGN-E391832 [TUS-24-N13](-)">
      <seq>aaccagccttcctgttttcagctatatttttacagtacaggtgacaaggtcattccaattcagtcagttgaatcttttattcaagagcagaggaaaattgggagagaggttcactctttcaactttggcttttttcctcatgtagatcattaccgaacttttccagacaaatatgtatttgtattacagaaatttttccaagaatgtacattcatacccaaagggaaaagacgttaatagatcaaaggagttgagggtgattaaccattcctcgtagtctttattgaattgctttaattggggcaatgtattttaagagttgcaaactagttttgtgttaagtgctgtcaattgctactcaggcagtaacattttgcaatgaggaggctttgctgcaagtggactggtagtagttgcaaattggtccaaagtagacttacatttccggccaatgttttttaataacatgaggaagtctttatttgtgttttatttaattgagcatgttgtttcgtccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="96075" stop="94957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95775" g_stop="95256" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="546"/>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E391832" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95775" e_stop="95256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTCTTCTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATCTGTATTACAGAAATTTCTCCAAGAATGTACACTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATCTTAAGAGTTGCAAACTAGTCTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTCTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATCTCCGGCCAATGTTTTCTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTT</genome_strand>
        <mrna_strand>AACCAGCCTTCCTGTTTTCAGCTATATTTTTACAGTACAGGTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTTTTTTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATTTGTATTACAGAAATTTTTCCAAGAATGTACATTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATTTTAAGAGTTGCAAACTAGTTTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTTTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATTTCCGGCCAATGTTTTTTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727097" ref_strand="+" ref_description="SGN-E727097 [LA13CH08]">
      <seq>aataacaaagtcgcaaatcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcggttgacgaagataattactgtccttgtcaagaaccagccttcctgtcttcagctatatctttacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98031" stop="95440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97731" g_stop="97283" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97282" i_stop="96978" i_length="305">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="552" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="95971" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="761" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95809" g_stop="95740" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="831" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E727097" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97731" e_stop="97283"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="95971"/>
          <exon e_start="95809" e_stop="95740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGT</genome_strand>
        <mrna_strand>AATAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG.................................................................................................................................................................................................................................................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391833" ref_strand="+" ref_description="SGN-E391833 [TUS-24-N13]">
      <seq>cggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgagaaacattcaaactaatggagccatgatgatggaaaccgttctttttgcaacacttgaaaagcttttctcgttgcttcttaatttgcctgatgttaatgagcgattgaaaaagataattactgtccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="97631" stop="95670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97331" g_stop="97073" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="362" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="95971" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="571" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95809" g_stop="95780" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="601" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E391833" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97331" e_stop="97073"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="95971"/>
          <exon e_start="95809" e_stop="95780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGT</genome_strand>
        <mrna_strand>CGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGAGAAACATTCAAACTAATGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAAAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGATTGAAAAAGATAATTACTGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246779" ref_strand="+" ref_description="SGN-E246779 [cLEF-45-N14]">
      <seq>ggttgtgatgttgggttggctcaggtcaaacccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="97630" stop="95672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97330" g_stop="97073" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="361" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="95972" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="569" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E246779" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97330" e_stop="97073"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="95972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATG</genome_strand>
        <mrna_strand>GGTTGTGATGTTGGGTTGGCTCAGGTCAAACCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555346" ref_strand="+" ref_description="SGN-E555346 [cTSC-1-P21]">
      <seq>cctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcgtagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaagaaatgaagtggaacgtccattaaccttgggaaacattcaaactagggagccatgatgatggaaaccgttctttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98013" stop="95722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97713" g_stop="97069" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97068" i_stop="96978" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="748" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="96022" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="905" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E555346" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97713" e_stop="97069"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="96022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</genome_strand>
        <mrna_strand>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG...........................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAAGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACT-AGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700899" ref_strand="+" ref_description="SGN-E700899 [FA14BH09]">
      <seq>ggaagcctctgtcagactactcacttgttctaaccgtcaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcgtagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="97999" stop="95818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97699" g_stop="97069" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97068" i_stop="96978" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="734" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="96118" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="796" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E700899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97699" e_stop="97069"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="96118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTC</genome_strand>
        <mrna_strand>GGAAGCCTCTGTCAGACTACTCACTTGTTCTAACCGTCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG...........................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315366" ref_strand="+" ref_description="SGN-E315366 [cTOA-22-A7]">
      <seq>caagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataaaccctaagggctgggcagctggatttactgcaaccatgctgaagaagtgtaactcctttgcatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="97719" stop="95821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97419" g_stop="97073" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96875" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="450" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96179" g_stop="96121" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="509" r_length="59" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E315366" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97419" e_stop="97073"/>
          <exon e_start="96977" e_stop="96875"/>
          <exon e_start="96179" e_stop="96121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTC</genome_strand>
        <mrna_strand>CAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAACCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGCAGCTGGATTTACTGCAACCATGCTGAAGAAGTGTAACTCCTTTGCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561592" ref_strand="+" ref_description="SGN-E561592 [17481]">
      <seq>cctcattcatggaagcctctgtcagactactcacttgttctaatcgccactatgtctccccttctctcttcctcaaactcaattacaagccccttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccccttcccatcgcaattcttgaatcccatcttatccaacgatcgttttgctcgaatagtatcgggtacccaagataaattattcaattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaacacccaaagaaggcccaattgtgacggttgtgatgttgggttggcttgggtcaaagccgaaacatttgaggaggtatattgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgagagatgttctttctttcgatcttgggaagaaattggaggagaggattgctgtgttggcaaatgagcttgctttgtggttgtcggaatccgataaggatggtcgtgagcggtgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98010" stop="96806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97710" g_stop="97106" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E561592" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97710" e_stop="97106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGAT</genome_strand>
        <mrna_strand>CCTCATTC-ATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACTATGTCTCCCCTTCTCTCTTCCTCAAACTCAATTACAAGCCCCTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCCTTCCCATCGCAATTCTTGAATCCCATCTTATCCAACGATCGTTTTGCTCGAATAGTATCGGGTACCCAAGATAAATTATTCAATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAACACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTTGGGTCAAAGCCGAAACATTTGAGGAGGTATATTGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAGAGATGTTCTTTCTTTCGATCTTGGGAAGAAATTGGAGGAGAGGATTGCTGTGTTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAAGGATGGTCGTGAGCGGTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311187" ref_strand="+" ref_description="SGN-E311187 [cLEZ-16-A6]">
      <seq>ctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98012" stop="96861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97712" g_stop="97161" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E311187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97712" e_stop="97161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATG</genome_strand>
        <mrna_strand>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443741" ref_strand="+" ref_description="SGN-E443741 [cSTA-39-L7]">
      <seq>ctcattcatggaagcctctatcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaattacaagccccttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatagcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccccttcccatcgcaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatcgggtacccaagataaattattcaattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaacacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatattgagttgtataactctaagggtattcacgctctaacgtttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98009" stop="96890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97709" g_stop="97190" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E443741" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97709" e_stop="97190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATT</genome_strand>
        <mrna_strand>CTCATTC-ATGGAAGCCTCTATCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATTACAAGCCCCTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATAGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCCTTCCCATCGCAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCGGGTACCCAAGATAAATTATTCAATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAACACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATTGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACGTTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311571" ref_strand="+" ref_description="SGN-E311571 [cTOA-6-I11]">
      <seq>tcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98008" stop="96939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97708" g_stop="97239" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E311571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97708" e_stop="97239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACAT</genome_strand>
        <mrna_strand>TCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317877" ref_strand="+" ref_description="SGN-E317877 [cTOA-30-L10]">
      <seq>ctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030A21-vmhD2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030A21.2" temp_strand="-" temp_description="C02HBa0030A21.2  AC215363.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0030A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98009" stop="96999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97709" g_stop="97299" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030A21.2" gen_strand="-" ref_id="SGN-E317877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97709" e_stop="97299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGC</genome_strand>
        <mrna_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>118</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1785" PGL_stop="2824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1785" e_stop="2278"/>
            <exon e_start="2317" e_stop="2824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="1785" e_stop="2278" e_length="494"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2279" i_stop="2316" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="2317" e_stop="2824" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1785" stop="2260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2186" stop="2278"/>
              <exon start="2317" stop="2824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGGATTAACTGAATGTTTTGGGTTGCTATTGGTGGCATTGATCCCATTTCTTCATGCTAGCACCATTTAACATGTTCTGCAGCTCAGTTTTAAGTTGCCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAAGTCACAAGGGCTGCAATGGGTTGCAAATGGTACAAGTGTGCAAGCCTAGAATGACAGTGCTCCTCAAGAAGTAACAAGTTATACACATTTTTTTTGCAGATTATGGCCAATGTAGAAGCGAATACAATTGATTTGATGTTGTGTATTTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGTGTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGTATTTCCACGTAAAGCAAA : CCCCATTGTTATACATGACATGACAATAAGATTCAGACTGACATCCCACCAACATCTAGCCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTATACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCGGTATGTATGATTTGGACATCAAAAAGCTTCTTGGCTCTCTTGAAGAAAGCAGATTCCTTCTTCCATCTTCTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTGTTAATCAGAGGATCATAGAGGTGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAACACCCCCACTCTGTTGTTCCAAAACTTGTGAGTTTGCATCAACATTGAACTGTATATTAGGCAGCACATGAGGAAGGTCAGTGACAGTAACCTTAGCACCAAGAATAGCAGCA</gDNA_template>
            <first_frame> Y  E  G  S  W  K  R  L  S  V  E  E  K  M  I  M  R  S  W  I  W  D  *  L  N  V  L  G  C  Y  W  W  H  *  S  H  F  F  M  L  A  P  F  N  M  F  C  S  S  V  L  S  C  H  L  S  *  K  *  D  T  S  A  L  K  S  Q  G  L  Q  W  V  A  N  G  T  S  V  Q  A  *  N  D  S  A  P  Q  E  V  T  S  Y  T  H  F  F  C  R  L  W  P  M  *  K  R  I  Q  L  I  *  C  C  V  F  F  L  Y  *  N  G  *  E  L  L  T  *  G  V  Y  N  L  I  L  S  R  V  L  L  Q  L  K  V  V  N  V  Q  L  K  C  N  N  T  Q  L  S  L  L  I  V  F  P  R  K  A  N :   P  I  V  I  H  D  M  T  I  R  F  R  L  T  S  H  Q  H  L  A  L  I  D  Y  S  G  Y  L  F  P  V  K  R  Y  T  T  T  P  I  L  D  P  S  G  G  G  S  V  C  M  I  W  T  S  K  S  F  L  A  L  L  K  K  A  D  S  F  F  H  L  L  K  *  A  I  T  K  A  I  F  F  P  P  P  N  R  K  N  L  N  V  L  I  R  G  S  *  R  *  S  W  Y  T  T  S  D  P  K  I  R  S  *  S  L  P  T  A  S  I  C  W  L  S  P  Q  L  S  A  A  T  S  T  P  P  L  C  C  S  K  T  C  E  F  A  S  T  L  N  C  I  L  G  S  T  *  G  R  S  V  T  V  T  L  A  P  R  I  A  A </first_frame>
            <second_frame>  M  K  A  V  G  R  G  S  Q  L  R  K  R  *  *  *  E  V  G  F  G  I  N  *  M  F  W  V  A  I  G  G  I  D  P  I  S  S  C  *  H  H  L  T  C  S  A  A  Q  F  *  V  A  I  Y  P  E  S  K  T  L  L  L  S  S  H  K  G  C  N  G  L  Q  M  V  Q  V  C  K  P  R  M  T  V  L  L  K  K  *  Q  V  I  H  I  F  F  A  D  Y  G  Q  C  R  S  E  Y  N  *  F  D  V  V  Y  F  F  C  I  K  M  D  E  S  S  *  L  E  V  F  I  T  *  F  *  V  E  F  C  Y  N  S  R  L  *  M  F  N  *  N  A  I  I  H  N  F  L  C  *  L  Y  F  H  V  K  Q   : T  P  L  L  Y  M  T  *  Q  *  D  S  D  *  H  P  T  N  I  *  P  *  L  T  I  V  A  I  F  S  R  *  K  G  I  Q  P  P  Q  S  *  T  H  R  A  E  A  R  Y  V  *  F  G  H  Q  K  A  S  W  L  S  *  R  K  Q  I  P  S  S  I  F  S  N  E  P  *  Q  K  L  S  S  F  H  L  L  T  G  R  T  S  T  C  *  S  E  D  H  R  G  D  H  G  T  P  H  Q  I  P  K  S  G  H  N  L  Y  Q  Q  P  P  Y  A  G  Y  P  P  S  *  A  P  Q  H  Q  H  P  H  S  V  V  P  K  L  V  S  L  H  Q  H  *  T  V  Y  *  A  A  H  E  E  G  Q  *  Q  *  P  *  H  Q  E  *  Q   </second_frame>
            <third_frame>   *  R  Q  L  E  E  A  L  S  *  G  K  D  D  N  E  K  L  D  L  G  L  T  E  C  F  G  L  L  L  V  A  L  I  P  F  L  H  A  S  T  I  *  H  V  L  Q  L  S  F  K  L  P  F  I  L  K  V  R  H  F  C  S  Q  V  T  R  A  A  M  G  C  K  W  Y  K  C  A  S  L  E  *  Q  C  S  S  R  S  N  K  L  Y  T  F  F  L  Q  I  M  A  N  V  E  A  N  T  I  D  L  M  L  C  I  F  S  V  L  K  W  M  R  A  L  N  L  R  C  L  *  L  N  F  E  *  S  F  V  T  T  Q  G  C  E  C  S  I  K  M  Q  *  Y  T  T  F  F  V  D  C  I  S  T  *  S  K  :  P  H  C  Y  T  *  H  D  N  K  I  Q  T  D  I  P  P  T  S  S  L  D  *  L  *  W  L  S  F  P  G  E  K  V  Y  N  H  P  N  P  R  P  I  G  R  R  L  G  M  Y  D  L  D  I  K  K  L  L  G  S  L  E  E  S  R  F  L  L  P  S  S  Q  M  S  H  N  K  S  Y  L  L  S  T  S  *  Q  E  E  P  Q  R  V  N  Q  R  I  I  E  V  I  M  V  H  H  I  R  S  Q  N  Q  V  I  I  S  T  N  S  L  H  M  L  V  I  P  P  A  K  R  R  N  I  N  T  P  T  L  L  F  Q  N  L  *  V  C  I  N  I  E  L  Y  I  R  Q  H  M  R  K  V  S  D  S  N  L  S  T  K  N  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2163" stop="2278"/>
                    <exon start="2317" stop="2536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYNLILSRVLLQLKVVNVQLKCNNTQLSLLIVFPRKANPIVIHDMTIRFRLTSHQHLALIDYSGYLFPVKRYTTTPILDPSGGGSVCMIWTSKSFLALLKKADSFFHLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2412" PGL_stop="2215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2412" e_stop="2215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2412" e_stop="2215" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2412" stop="2215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2412" stop="2215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2412" stop="2224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2411" stop="2215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</gDNA_template>
            <first_frame> F  T  G  K  R  *  P  L  *  S  I  K  A  R  C  W  W  D  V  S  L  N  L  I  V  M  S  C  I  T  M  G  M  G  L  A  Q  Q  R  S  K  K  L  L  Y  L  L  Y  V  E  I  Q  S  T  K  K  V  V  Y  Y  C  I  L  I  E  H </first_frame>
            <second_frame>  S  P  G  K  D  S  H  Y  S  Q  S  R  L  D  V  G  G  M  S  V  *  I  L  L  S  C  H  V  *  Q  W  G  W  G  *  P  N  K  E  V  K  N  Y  C  I  C  F  T  W  K  Y  N  Q  Q  R  K  L  C  I  I  A  F  *  L  N   </second_frame>
            <third_frame>   H  R  E  K  I  A  T  I  V  N  Q  G  *  M  L  V  G  C  Q  S  E  S  Y  C  H  V  M  Y  N  N  G  D  G  V  S  P  T  K  K  *  K  T  T  V  F  A  L  R  G  N  T  I  N  K  E  S  C  V  L  L  H  F  N  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="3427" PGL_stop="2445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3427" e_stop="2445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3427" e_stop="2445" e_length="983"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3427" stop="2991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3175" stop="2584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3169" stop="2445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3169" stop="2586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3169" stop="2632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3169" stop="2672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3162" stop="2583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</gDNA_template>
            <first_frame> L  I  D  *  *  L  F  K  Q  K  N  Q  S  F  W  F  *  I  R  Y  Y  H  L  A  S  F  K  F  F  G  N  L  T  I  L  Y  S  I  F  M  V  I  L  L  Y  H  L  Y  Y  Q  K  K  I  K  N  K  N  L  L  L  G  Q  D  S  A  D  W  V  G  *  T  P  Q  E  P  R  N  R  R  R  L  S  H  D  F  S  N  C  R  N  Q  R  R  H  *  H  G  R  P  Q  S  V  H  Y  D  S  P  T  R  W  P  *  Q  *  R  L  S  A  A  A  K  T  A  T  P  F  P  P  I  H  *  L  K  R  S  H  Q  T  T  S  I  *  R  P  F  F  P  T  L  A  C  R  Y  Y  S  R  H  S  P  *  *  H  S  *  R  R  I  N  S  V  F  R  F  V  Q  T  S  G  K  R  G  F  A  T  P  S  Y  S  R  T  G  F  R  N  R  C  C  W  D  S  C  C  C  Y  S  W  C  *  G  Y  C  H  *  P  S  S  C  A  A  *  Y  T  V  Q  C  *  C  K  L  T  S  F  G  T  T  E  W  G  C  *  C  C  G  A  *  L  G  G  *  P  A  Y  G  G  C  W  *  R  L  *  P  D  F  G  I  *  C  G  V  P  *  S  P  L  *  S  S  D  *  H  V  E  V  L  P  V  R  R  W  K  E  D  S  F  C  Y  G  S  F  E  K  M  E  E  G  I  C  F  L  Q  E  S  Q  E  A  F  *  C  P  N  H  T  Y  R  A  S  A   </first_frame>
            <second_frame>  *  L  I  D  N  Y  L  N  K  K  I  N  P  F  G  F  K  F  V  I  T  I  W  R  P  S  N  S  L  A  T  *  P  F  Y  I  L  Y  L  W  *  Y  Y  F  T  I  Y  I  T  K  K  K  *  K  I  K  I  C  C  *  G  K  T  P  Q  T  G  S  D  K  P  L  K  N  P  G  I  A  A  A  C  H  M  T  S  P  I  V  E  I  K  G  D  I  D  T  D  D  L  N  P  F  T  M  I  L  P  Q  D  G  H  D  N  D  A  S  P  Q  Q  Q  K  Q  Q  L  H  F  L  Q  S  I  N  S  N  V  V  I  R  Q  L  P  S  E  G  L  S  F  Q  L  W  P  A  A  T  I  L  V  T  L  L  D  N  T  R  N  G  E  S  T  P  F  S  D  L  F  K  R  Q  E  K  G  V  S  L  P  L  R  I  L  E  L  G  S  G  T  G  V  V  G  I  A  A  A  A  I  L  G  A  K  V  T  V  T  D  L  P  H  V  L  P  N  I  Q  F  N  V  D  A  N  S  Q  V  L  E  Q  Q  S  G  G  V  D  V  A  A  L  S  W  G  D  N  Q  H  M  E  A  V  G  R  D  Y  D  L  I  L  G  S  D  V  V  Y  H  D  H  L  Y  D  P  L  I  N  T  L  R  F  F  L  L  G  G  G  K  K  I  A  F  V  M  A  H  L  R  R  W  K  K  E  S  A  F  F  K  R  A  K  K  L  F  D  V  Q  I  I  H  T  E  P  P  P  </second_frame>
            <third_frame>   N  *  L  I  I  I  *  T  K  K  S  I  L  L  V  L  N  S  L  L  P  S  G  V  L  Q  I  L  W  Q  L  D  H  F  I  F  Y  I  Y  G  N  T  T  L  P  F  I  L  P  K  K  N  K  K  *  K  F  V  V  R  A  R  L  R  R  L  G  R  I  N  P  S  R  T  P  E  S  P  P  P  V  T  *  L  L  Q  L  S  K  S  K  E  T  L  T  R  T  T  S  I  R  S  L  *  F  S  H  K  M  A  M  T  M  T  P  L  R  S  S  K  N  S  N  S  I  S  S  N  P  L  T  Q  T  *  S  S  D  N  F  H  L  K  A  F  L  S  N  S  G  L  P  L  L  F  S  S  L  S  L  I  T  L  V  T  A  N  Q  L  R  F  P  I  C  S  N  V  R  K  K  G  F  R  Y  P  F  V  F  S  N  W  V  Q  E  Q  V  L  L  G  *  L  L  L  L  F  L  V  L  R  L  L  S  L  T  F  L  M  C  C  L  I  Y  S  S  M  L  M  Q  T  H  K  F  W  N  N  R  V  G  V  L  M  L  R  R  L  A  G  G  I  T  S  I  W  R  L  L  V  E  I  M  T  *  F  W  D  L  M  W  C  T  M  I  T  S  M  I  L  *  L  T  R  *  G  S  S  C  *  E  V  E  R  R  *  L  L  L  W  L  I  *  E  D  G  R  R  N  L  L  S  S  R  E  P  R  S  F  L  M  S  K  S  Y  I  P  S  L  R  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3246" stop="2446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKTPQTGSDKPLKNPGIAAACHMTSPIVEIKGDIDTDDLNPFTMILPQDGHDNDASPQQQKQQLHFLQSINSNVVIRQLPSEGLSFQLWPAATILVTLLDNTRNGESTPFSDLFKRQEKGVSLPLRILELGSGTGVVGIAAAAILGAKVTVTDLPHVLPNIQFNVDANSQVLEQQSGGVDVAALSWGDNQHMEAVGRDYDLILGSDVVYHDHLYDPLINTLRFFLLGGGKKIAFVMAHLRRWKKESAFFKRAKKLFDVQIIHTEPPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22461" PGL_stop="25003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22461" e_stop="23202"/>
            <exon e_start="24209" e_stop="24298"/>
            <exon e_start="24388" e_stop="24455"/>
            <exon e_start="24694" e_stop="25003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.370" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22461" e_stop="23202" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="23203" i_stop="24208" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24209" e_stop="24298" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.758">
            <gDNA_intron_boundary i_start="24299" i_stop="24387" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24388" e_stop="24455" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.370">
            <gDNA_intron_boundary i_start="24456" i_stop="24693" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="24694" e_stop="25003" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22461" stop="23050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22468" stop="23065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22469" stop="22998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="23047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22472" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="24701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22476" stop="23157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22476" stop="22628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22483" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="25003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22489" stop="23143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22498" stop="23123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22549" stop="23117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22642" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="24832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22937" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="24961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430661" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23007" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="24998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23119" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="25002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23119" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="25001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23119" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="25001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23119" stop="23202"/>
              <exon start="24209" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="25000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24265" stop="24298"/>
              <exon start="24388" stop="24455"/>
              <exon start="24694" stop="24989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGTACACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG : GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG : AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA : TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGTTA</gDNA_template>
            <first_frame> S  V  H  K  K  H  F  S  C  K  *  K  N  G  E  L  G  *  S  T  K  T  I  V  T  W  P  N  E  I  S  W  N  Q  T  S  *  Y  R  D  R  T  R  H  N  Y  E  F  L  G  S  F  *  N  H  N  S  K  N  E  E  K  Q  K  N  H  N  H  Y  S  S  L  Q  Q  P  I  C  Y  F  P  *  F  H  H  R  T  R  P  E  Q  T  R  G  R  T  N  P  R  L  C  R  R  R  N  S  D  V  A  I  S  N  R  C  I  N  *  K  I  L  C  L  C  T  G  P  T  F  L  R  R  I  S  Y  G  *  L  R  *  I  A  G  F  S  S  R  V  F  G  *  R  A  E  E  I  R  R  G  K  M  R  S  G  W  I  *  L  W  R  N  G  G  V  *  D  G  G  N  V  S  R  F  S  *  G  V  G  G  V  W  I  D  I  S  D  D  *  F  H  *  H  Y  H  A  Q  W  F  G  I  F  I  F  F  G  A  A  A  A  Y  L  C  *  G  S  *  G  P  A  K  S  G  C  L  Q  E  A  L  V  P  *  S  S  S  *  R  F  S  R   : G  N  V  H  Q  Q  K  G  K  R  R  A  A  R  R  V  G  G  E  Q  Q  R  H  K  Y  S  K  F  S  T   : E  N  T  S  P  L  G  *  E  *  S  N  F  Q  F  G  A  C  S  E  H  E  T  :  S  T  G  *  E  D  Y  I  S  W  H  R  Q  G  R  A  S  G  S  P  R  T  T  L  R  L  *  Q  V  S  Q  A  V  P  Y  I  P  A  C  R  K  S  P  K  V  K  D  T  T  A  K  F  T  I  V  I  S  C  N  F  L  S  M  K  R  K  T  T  M  C  F  L  C  N  I  S  Y  Y  V  I  W  V  Q  N  L  K  S  S  S  *  T  N  I  Y  K  H  I  L  Q  I  A  D  V  </first_frame>
            <second_frame>  P  Y  T  R  N  I  F  L  A  N  K  K  M  V  N  L  V  E  A  Q  K  P  L  L  H  G  L  M  K  L  A  G  I  R  P  H  S  I  E  I  E  P  G  T  I  M  N  F  W  V  P  S  E  T  I  I  Q  K  T  K  K  N  K  K  I  T  T  T  T  P  L  S  N  N  Q  Y  A  I  S  P  D  S  T  T  E  P  D  P  N  K  P  V  V  V  L  I  H  G  F  A  G  E  G  I  V  T  W  Q  F  Q  I  G  A  L  T  K  K  Y  S  V  Y  V  P  D  L  L  F  F  G  G  S  V  T  D  S  S  D  R  S  P  G  F  Q  A  E  C  L  G  K  G  L  R  K  L  G  V  E  K  C  V  V  V  G  F  S  Y  G  G  M  V  A  F  K  M  A  E  M  F  P  D  L  V  E  A  L  V  V  S  G  S  I  L  A  M  T  D  S  I  S  T  T  T  L  N  G  L  G  F  S  S  S  S  E  L  L  L  P  T  S  V  K  G  L  K  A  L  L  K  V  A  A  Y  K  K  L  W  F  P  D  R  L  H  R  D  F  L  E  :  V  M  F  T  N  R  K  E  R  G  E  L  L  E  G  L  V  V  S  N  K  D  T  S  I  P  N  F  P  Q  :  R  I  H  L  L  W  G  E  N  D  Q  I  F  N  L  E  L  A  Q  N  M  K  H :   Q  L  G  E  K  T  T  F  H  G  I  D  K  A  G  H  L  V  H  L  E  R  P  C  V  Y  N  K  C  L  K  Q  F  L  T  S  L  H  A  E  K  A  Q  K  *  R  T  L  L  Q  S  S  L  S  *  Y  H  V  T  F  C  Q  *  K  G  K  Q  L  C  A  S  S  V  I  L  V  T  M  *  F  G  F  R  I  *  N  H  H  L  K  Q  I  Y  T  N  I  Y  C  K  L  Q  M  L </second_frame>
            <third_frame>   R  T  Q  E  T  F  F  L  Q  I  K  K  W  *  T  W  L  K  H  K  N  H  C  Y  M  A  *  *  N  *  L  E  S  D  L  I  V  *  R  *  N  Q  A  Q  L  *  I  F  G  F  L  L  K  P  *  F  K  K  R  R  K  T  K  K  S  Q  P  L  L  L  S  P  T  T  N  M  L  F  P  L  I  P  P  P  N  P  T  R  T  N  P  W  S  Y  *  S  T  A  L  P  A  K  E  *  *  R  G  N  F  K  S  V  H  *  L  K  N  T  L  F  M  Y  R  T  Y  F  S  S  A  D  Q  L  R  I  A  P  I  D  R  R  V  F  K  Q  S  V  W  V  K  G  *  G  N  *  A  W  K  N  A  *  W  L  D  L  V  M  E  E  W  W  R  L  R  W  R  K  C  F  Q  I  *  L  R  R  W  W  C  L  D  R  Y  *  R  *  L  I  P  L  A  L  P  R  S  M  V  W  D  F  H  L  L  R  S  C  C  C  L  P  L  L  R  V  L  R  P  C  *  K  W  L  L  T  R  S  F  G  S  L  I  V  F  I  E  I  F  S  R :   *  C  S  P  T  E  R  K  E  E  S  C  *  K  G  W  W  *  A  T  K  T  Q  V  F  Q  I  F  H  R :   E  Y  I  S  S  G  V  R  M  I  K  F  S  I  W  S  L  L  R  T  *  N   : I  N  W  V  R  R  L  H  F  M  A  *  T  R  Q  G  I  W  F  T  *  N  D  L  A  F  I  T  S  V  S  S  S  S  L  H  P  C  M  Q  K  K  P  K  S  E  G  H  Y  C  K  V  H  Y  R  N  I  M  *  L  F  V  N  E  K  E  N  N  Y  V  L  P  L  *  Y  *  L  L  C  N  L  G  S  E  F  E  I  I  I  L  N  K  Y  I  Q  T  Y  I  A  N  C  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22462" stop="23202"/>
                    <exon start="24209" stop="24298"/>
                    <exon start="24388" stop="24455"/>
                    <exon start="24694" stop="24829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYTRNIFLANKKMVNLVEAQKPLLHGLMKLAGIRPHSIEIEPGTIMNFWVPSETIIQKTKKNKKITTTTPLSNNQYAISPDSTTEPDPNKPVVVLIHGFAGEGIVTWQFQIGALTKKYSVYVPDLLFFGGSVTDSSDRSPGFQAECLGKGLRKLGVEKCVVVGFSYGGMVAFKMAEMFPDLVEALVVSGSILAMTDSISTTTLNGLGFSSSSELLLPTSVKGLKALLKVAAYKKLWFPDRLHRDFLEVMFTNRKERGELLEGLVVSNKDTSIPNFPQRIHLLWGENDQIFNLELAQNMKHQLGEKTTFHGIDKAGHLVHLERPCVYNKCLKQFLTSLHAEKAQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28001" PGL_stop="25228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28001" e_stop="27933"/>
            <exon e_start="26898" e_stop="26806"/>
            <exon e_start="26590" e_stop="26544"/>
            <exon e_start="26469" e_stop="26407"/>
            <exon e_start="26321" e_stop="26262"/>
            <exon e_start="26136" e_stop="26077"/>
            <exon e_start="25950" e_stop="25891"/>
            <exon e_start="25454" e_stop="25340"/>
            <exon e_start="25261" e_stop="25228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.312" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.073" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.663" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28001" e_stop="27933" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27932" i_stop="26899" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26898" e_stop="26806" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.312" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26805" i_stop="26591" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26590" e_stop="26544" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26543" i_stop="26470" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26469" e_stop="26407" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.900">
            <gDNA_intron_boundary i_start="26406" i_stop="26322" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26321" e_stop="26262" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.073">
            <gDNA_intron_boundary i_start="26261" i_stop="26137" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26136" e_stop="26077" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.572" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26076" i_stop="25951" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25950" e_stop="25891" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25890" i_stop="25455" i_length="436"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="25454" e_stop="25340" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.533" acc_prob="0.663">
            <gDNA_intron_boundary i_start="25339" i_stop="25262" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25261" e_stop="25228" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28001" stop="27933"/>
              <exon start="26898" stop="26806"/>
              <exon start="26590" stop="26544"/>
              <exon start="26469" stop="26407"/>
              <exon start="26321" stop="26262"/>
              <exon start="26136" stop="26077"/>
              <exon start="25950" stop="25891"/>
              <exon start="25454" stop="25340"/>
              <exon start="25261" stop="25228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28001" stop="27933"/>
              <exon start="26898" stop="26806"/>
              <exon start="26590" stop="26544"/>
              <exon start="26469" stop="26407"/>
              <exon start="26321" stop="26262"/>
              <exon start="26136" stop="26077"/>
              <exon start="25950" stop="25891"/>
              <exon start="25454" stop="25394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG : CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG : GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG : GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT : GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG : GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG : GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG : ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAG : GAACATTTGCTATCTATGCACTGGTATCAGCTTT</gDNA_template>
            <first_frame> S  H  S  S  N  S  V  E  L  M  V  F  Y  S  I  P  V  T  S  S  N  Q  L  :  Q  E  V  M  N  W  R  I  R  Q  Q  K  V  G  T  T  S  D  I  R  M  K  F  L  *  *  I  Q  V  K  *  :  E  Y  H  P  V  K  Q  Q  H  L  V  L  G  L  F  R :   S  S  S  L  V  S  L  H  H  W  W  T  R  R  D  A  G  Y  S  S  L :   Y  P  H  L  *  *  L  L  A  A  C  L  L  Q  C  H  S  S  *  R :   S  S  P  L  K  I  G  I  H  S  L  Q  Y  C  L  W  L  D  L  W :   P  W  *  W  H  L  V  L  D  W  D  P  Y  L  G  S  *  C  L  R :   F  C  L  *  A  S  K  V  W  V  A  V  L  Q  L  W  P  I  G  F  Q  H  G  L  L  Q  *  Q  Q  I  C  F  *  L  G  V  K  E  :  E  H  L  L  S  M  H  W  Y  Q  L  </first_frame>
            <second_frame>  R  T  P  A  T  Q  W  S  *  W  C  F  I  L  F  Q  *  H  L  Q  I  S  C :   K  R  *  *  T  G  E  L  D  N  K  K  S  G  P  H  L  I  S  G  *  S  F  C  S  R  F  K  *  N  R :   N  I  I  Q  *  S  S  N  I  W  Y  W  G  Y  S   : G  H  R  H  W  Y  L  C  I  T  G  G  Q  G  G  T  Q  A  T  P  H   : C  I  L  I  C  N  D  C  *  Q  L  A  C  C  N  V  I  L  P  E   : G  V  H  L  *  K  L  A  F  I  L  C  S  I  V  S  G  W  T  C   : G  L  G  D  G  I  W  C  W  I  G  I  H  T  L  D  H  N  V  *   : D  S  A  C  K  H  Q  K  S  G  W  Q  C  C  N  F  G  Q  L  V  F  S  M  D  C  Y  N  D  S  K  F  A  F  N  L  E  *  R  R :   N  I  C  Y  L  C  T  G  I  S  F </second_frame>
            <third_frame>   A  L  Q  Q  L  S  G  V  N  G  V  L  F  Y  S  S  N  I  F  K  S  A   : A  R  G  D  E  L  E  N  *  T  T  K  S  R  D  H  I  *  Y  Q  D  E  V  F  V  V  D  S  S  K  I   : G  I  S  S  S  K  A  A  T  F  G  I  G  A  I  Q  :  V  I  V  T  G  I  S  A  S  L  V  D  K  A  G  R  R  L  L  L  I  :  V  S  S  S  V  M  T  A  S  S  L  L  V  A  M  S  F  F  L  K  :  E  F  T  S  E  N  W  H  S  F  F  A  V  L  S  L  V  G  L  V  :  A  L  V  M  A  F  G  V  G  L  G  S  I  P  W  I  I  M  S  E  :  I  L  P  V  S  I  K  S  L  G  G  S  V  A  T  L  A  N  W  F  S  A  W  I  V  T  M  T  A  N  L  L  L  T  W  S  K  G   : G  T  F  A  I  Y  A  L  V  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26845" stop="26806"/>
                    <exon start="26590" stop="26544"/>
                    <exon start="26469" stop="26407"/>
                    <exon start="26321" stop="26262"/>
                    <exon start="26136" stop="26077"/>
                    <exon start="25950" stop="25891"/>
                    <exon start="25454" stop="25340"/>
                    <exon start="25261" stop="25230"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQDEVFVVDSSKIGISSSKAATFGIGAIQVIVTGISASLVDKAGRRLLLIVSSSVMTASSLLVAMSFFLKEFTSENWHSFFAVLSLVGLVALVMAFGVGLGSIPWIIMSEILPVSIKSLGGSVATLANWFSAWIVTMTANLLLTWSKGGTFAIYALVSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30756" PGL_stop="28402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30756" e_stop="30522"/>
            <exon e_start="30439" e_stop="30377"/>
            <exon e_start="29876" e_stop="29787"/>
            <exon e_start="29529" e_stop="29470"/>
            <exon e_start="29371" e_stop="29306"/>
            <exon e_start="29214" e_stop="29149"/>
            <exon e_start="29025" e_stop="28950"/>
            <exon e_start="28592" e_stop="28528"/>
            <exon e_start="28448" e_stop="28402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="0.984"/>
          <exon-intron don_prob="0.549" acc_prob="0.159" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.351" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="30756" e_stop="30522" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30521" i_stop="30440" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="30439" e_stop="30377" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="30376" i_stop="29877" i_length="500"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="29876" e_stop="29787" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.549" acc_prob="0.159">
            <gDNA_intron_boundary i_start="29786" i_stop="29530" i_length="257"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29529" e_stop="29470" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.881">
            <gDNA_intron_boundary i_start="29469" i_stop="29372" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29371" e_stop="29306" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29305" i_stop="29215" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29214" e_stop="29149" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.328" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29148" i_stop="29026" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29025" e_stop="28950" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.980">
            <gDNA_intron_boundary i_start="28949" i_stop="28593" i_length="357"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28592" e_stop="28528" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.351" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28527" i_stop="28449" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.979">
            <gDNA_exon_boundary e_start="28448" e_stop="28402" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="30522"/>
              <exon start="30439" stop="30377"/>
              <exon start="29876" stop="29787"/>
              <exon start="29529" stop="29470"/>
              <exon start="29371" stop="29351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30710" stop="30522"/>
              <exon start="30439" stop="30377"/>
              <exon start="29876" stop="29787"/>
              <exon start="29529" stop="29470"/>
              <exon start="29371" stop="29306"/>
              <exon start="29214" stop="29149"/>
              <exon start="29025" stop="28950"/>
              <exon start="28592" stop="28528"/>
              <exon start="28448" stop="28402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30709" stop="30522"/>
              <exon start="30439" stop="30377"/>
              <exon start="29876" stop="29787"/>
              <exon start="29529" stop="29470"/>
              <exon start="29371" stop="29306"/>
              <exon start="29214" stop="29149"/>
              <exon start="29025" stop="28976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACT : TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAG : TTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG : ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT : GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG : GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG : CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG : GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG : GCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCT</gDNA_template>
            <first_frame> F  F  H  L  Y  P  K  R  K  Q  K  T  R  N  N  D  E  F  P  R  *  *  H  R  G  R  A  S  E  A  L  A  A  Y  R  *  L  V  P  D  E  L  P  P  V  Q  Y  D  G  I  L  S  P  N  P  P  R  I  Y  L  H  L  S  L  C  S  H  C  C  I  R  P  N  S  I  W  I  H   : L  W  L  L  *  P  Y  P  I  R  N  H  Q  R  P  *  T  Y  H  F  R   : V  L  N  L  W  I  F  S  K  C  W  C  N  D  W  R  N  C  K  R  S  N  I  R  I  H  W  T  K  R   : D  S  N  D  C  I  N  S  *  Y  Y  W  M  A  C  R  F  I  C  H   : *  C  L  I  F  I  Y  G  K  A  V  G  R  F  W  C  R  H  Y  F  L  C   : G  A  C  I  Y  S  R  D  F  T  *  K  H  E  G  S  S  W  I  H  *  P   : A  L  C  N  S  G  D  Y  A  G  I  S  V  G  I  I  C  K  L  E  S  A  C  C  Y  R :   N  V  T  M  H  G  F  D  T  W  S  I  F  Y  T  *  I  S  S  L  V   : G  *  K  W  A  E  *  R  F  *  N  F  F  A  S  S </first_frame>
            <second_frame>  F  F  T  F  I  L  N  G  N  R  R  H  G  T  T  M  S  F  R  D  D  N  T  E  D  G  L  R  K  P  L  L  H  T  G  S  W  Y  R  M  S  S  R  Q  S  S  M  M  G  S  S  A  Q  I  L  R  E  S  I  S  I  Y  L  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  S  N  P  T  Q  S  E  I  T  R  D  L  R  L  T  I  S  E  :  F  S  I  F  G  S  L  A  N  V  G  A  M  I  G  A  I  A  S  G  Q  I  S  E  Y  I  G  R  K  G  :  T  L  M  I  A  S  I  P  N  I  I  G  W  L  A  V  S  F  A  T  :  D  V  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  S  P  K  N  M  R  G  V  L  G  S  I  N  Q  :  L  S  V  T  V  G  I  M  L  V  Y  L  L  G  L  F  V  S  W  R  V  L  A  V  I   : G  M  L  P  C  M  V  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  N  G  L  N  E  D  F  E  T  S  L  Q  V   </second_frame>
            <third_frame>   F  S  P  L  S  *  T  E  T  E  D  T  E  Q  R  *  V  S  E  M  I  T  Q  R  T  G  F  G  S  P  C  C  I  P  V  A  G  T  G  *  A  P  A  S  P  V  *  W  D  P  Q  P  K  S  S  A  N  L  S  P  F  I  F  V  F  S  L  L  H  *  A  Q  F  N  L  D  S  L :   V  A  T  L  T  L  P  N  P  K  S  P  E  T  L  D  L  P  F  Q  S :   S  Q  S  L  D  L  *  Q  M  L  V  Q  *  L  A  Q  L  Q  A  V  K  Y  Q  N  T  L  D  E  K  G :   L  *  *  L  H  Q  F  L  I  L  L  D  G  L  P  F  H  L  P  L :   M  S  H  F  Y  I  W  E  G  C  W  K  V  L  V  S  A  L  F  P  M  W :   C  L  Y  I  *  Q  R  F  H  L  K  T  *  G  E  F  L  D  P  L  T  S :   S  L  *  Q  W  G  L  C  W  Y  I  C  W  D  Y  L  *  A  G  E  C  L  L  L  *  :  E  C  Y  H  A  W  F  *  Y  L  V  Y  F  L  Y  L  N  L  L  V  G  W :   L  K  M  G  *  M  K  I  L  K  L  L  C  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30755" stop="30522"/>
                    <exon start="30439" stop="30377"/>
                    <exon start="29876" stop="29787"/>
                    <exon start="29529" stop="29470"/>
                    <exon start="29371" stop="29306"/>
                    <exon start="29214" stop="29149"/>
                    <exon start="29025" stop="28950"/>
                    <exon start="28592" stop="28528"/>
                    <exon start="28448" stop="28404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTFILNGNRRHGTTMSFRDDNTEDGLRKPLLHTGSWYRMSSRQSSMMGSSAQILRESISIYLCVLIVALGPIQFGFTCGYSNPTQSEITRDLRLTISEFSIFGSLANVGAMIGAIASGQISEYIGRKGTLMIASIPNIIGWLAVSFATDVSFLYMGRLLEGFGVGIISYVVPVYIAEISPKNMRGVLGSINQLSVTVGIMLVYLLGLFVSWRVLAVIGMLPCMVLIPGLFFIPESPRWLAKNGLNEDFETSLQV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41584" PGL_stop="42653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41584" e_stop="42653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41584" e_stop="42653" e_length="1070"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41584" stop="42255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41585" stop="42234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41585" stop="42229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41585" stop="42226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41585" stop="42196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41585" stop="42142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41597" stop="42210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42108" stop="42653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42172" stop="42646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42425" stop="42653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</gDNA_template>
            <first_frame> Q  R  P  R  K  G  Y  G  L  A  *  S  Q  S  H  E  L  *  P  I  S  T  *  P  A  R  I  I  F  L  C  S  K  Q  V  P  Y  R  T  K  *  N  N  K  *  T  *  E  Y  H  F  *  P  *  P  N  P  R  S  A  *  Y  Y  S  K  F  R  S  R  S  S  S  T  T  I  Y  *  F  S  K  *  E  E  Y  Y  P  R  P  V  Q  R  M  S  Q  K  S  C  C  K  F  G  R  I  C  T  R  R  L  R  R  I  H  A  K  R  R  R  G  D  T  R  I  P  E  M  C  S  L  *  L  S  P  Q  F  S  *  E  R  D  *  G  R  I  T  N  T  W  C  A  *  K  *  P  P  Y  T  Q  P  N  S  A  F  S  S  S  C  A  Y  A  A  T  T  P  S  *  I  P  S  Q  L  S  K  R  S  H  G  T  S  N  D  E  F  R  R  E  H  G  S  C  S  *  I  I  K  *  R  S  E  Y  V  S  R  R  T  R  G  N  S  A  L  *  F  F  G  I  E  E  E  I  S  N  E  I  Q  S  T  T  E  R  *  N  A  R  V  R  *  E  T  G  M  E  N  S  E  T  R  *  T  R  S  A  S  I  L  *  *  S  G  R  E  E  T  S  V  Q  S  V  D  A  Q  Q  Q  T  S  N  Q  E  E  T  K  L  N  R  Q  D  Y  K  I  P  I  *  I  N  *  L  E  T  L  F  F  F  V  H  K  S  D  S  L  L  L  D  K  *  *  *  L  L  F  F  D  H  K  I  *  T  L  C  G  K  Y  S  L  V  A  P  I  N  S  I  T  K  V  S  L  N  S   </first_frame>
            <second_frame>  R  G  Q  E  K  D  M  G  L  P  N  P  N  P  M  S  Y  N  P  S  Q  L  N  Q  Q  E  S  S  S  S  A  A  N  K  F  L  T  A  P  N  R  T  T  N  E  H  E  N  T  I  F  S  P  N  Q  T  L  D  Q  H  N  I  T  Q  N  S  D  P  D  P  V  R  Q  L  S  T  S  S  A  S  E  R  N  I  T  P  V  R  Y  K  E  C  L  K  N  H  A  A  N  L  G  G  Y  V  L  D  G  C  G  E  F  M  P  S  G  E  E  E  T  L  E  Y  L  K  C  A  A  C  D  C  H  R  N  F  H  R  K  E  T  E  D  E  S  Q  T  P  G  V  H  R  N  N  H  R  I  P  N  Q  T  P  P  S  L  P  A  V  P  T  Q  Q  Q  H  H  H  K  Y  P  H  S  Y  P  R  G  H  M  A  P  V  M  M  S  F  G  G  N  T  G  V  A  A  E  S  S  S  E  D  L  N  M  F  H  G  G  Q  G  V  I  Q  P  C  N  F  S  A  S  K  K  R  F  R  T  K  F  S  Q  Q  Q  K  D  R  M  L  E  F  A  E  K  L  G  W  R  I  Q  K  Q  D  E  Q  E  V  H  Q  F  C  N  E  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  S  K  Q  A  T  K  K  K  Q  N  *  T  G  K  T  T  K  S  Q  F  R  *  I  N  *  R  H  S  F  F  L  C  I  N  L  I  V  Y  Y  *  T  N  S  S  N  Y  Y  S  L  I  T  K  F  K  P  Y  V  V  S  T  H  *  *  H  Q  L  I  L  S  Q  K  S  L  *  I  P  </second_frame>
            <third_frame>   E  A  K  K  R  I  W  A  C  L  I  P  I  P  *  V  I  T  H  L  N  L  T  S  K  N  H  L  P  L  Q  Q  T  S  S  L  P  H  Q  I  E  Q  Q  M  N  M  R  I  P  F  L  A  L  T  K  P  *  I  S  I  I  L  L  K  I  Q  I  Q  I  Q  F  D  N  Y  L  L  V  Q  Q  V  R  G  I  L  P  P  S  G  T  K  N  V  S  K  I  M  L  Q  I  W  E  D  M  Y  *  T  V  A  E  N  S  C  Q  A  E  K  R  R  H  *  N  T  *  N  V  Q  L  V  I  V  T  A  I  F  I  G  K  R  L  R  T  N  H  K  H  L  V  C  I  E  I  T  T  V  Y  P  T  K  L  R  L  L  F  Q  L  C  L  R  S  N  N  T  I  I  N  T  L  T  A  I  Q  E  V  T  W  H  Q  *  *  *  V  S  A  G  T  R  E  L  Q  L  N  H  Q  V  K  I  *  I  C  F  T  E  D  K  G  *  F  S  L  V  I  F  R  H  R  R  R  D  F  E  R  N  S  V  N  N  R  K  I  E  C  *  S  S  L  R  N  W  D  G  E  F  R  N  K  M  N  K  K  C  I  N  F  V  M  K  W  A  *  R  D  K  C  S  K  C  G  C  T  T  A  N  K  Q  P  R  R  N  K  I  K  Q  A  R  L  Q  N  P  N  L  D  K  L  I  R  D  T  L  F  F  C  A  *  I  *  *  F  I  I  R  Q  I  V  V  I  T  I  L  *  S  Q  N  L  N  L  M  W  *  V  L  T  S  S  T  N  *  F  Y  H  K  S  L  F  K  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41585" stop="42457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQEKDMGLPNPNPMSYNPSQLNQQESSSSAANKFLTAPNRTTNEHENTIFSPNQTLDQHNITQNSDPDPVRQLSTSSASERNITPVRYKECLKNHAANLGGYVLDGCGEFMPSGEEETLEYLKCAACDCHRNFHRKETEDESQTPGVHRNNHRIPNQTPPSLPAVPTQQQHHHKYPHSYPRGHMAPVMMSFGGNTGVAAESSSEDLNMFHGGQGVIQPCNFSASKKRFRTKFSQQQKDRMLEFAEKLGWRIQKQDEQEVHQFCNEVGVKRQVFKVWMHNSKQATKKKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47026" PGL_stop="44246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47026" e_stop="46971"/>
            <exon e_start="45325" e_stop="45228"/>
            <exon e_start="44947" e_stop="44246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47026" e_stop="46971" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46970" i_stop="45326" i_length="1645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45325" e_stop="45228" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="45227" i_stop="44948" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="44947" e_stop="44246" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47026" stop="46971"/>
              <exon start="45325" stop="45228"/>
              <exon start="44947" stop="44246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCA : GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG : AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGACGAGGCTTCCAATAAAGCATCGGATGCGTATG</gDNA_template>
            <first_frame> Q  Q  S  K  Q  S  D  S  W  T  D  W  V  S  S  K  L  S  Q :   H  Q  D  D  A  K  D  E  A  Q  R  L  A  D  R  A  K  G  T  A  S  N  A  R  D  S  V  N  S  A  A  H   : E  T  Q  R  Y  G  S  Q  K  A  K  E  M  A  D  V  A  S  D  K  F  G  D  A  K  N  Y  A  S  K  K  A  N  Q  A  M  D  A  A  A  D  T  A  S  H  A  K  E  R  G  K  E  N  A  Y  D  A  Y  A  Y  A  S  E  K  T  G  Q  A  T  K  T  A  A  E  F  A  K  E  K  A  H  G  A  Y  A  Y  A  S  D  K  A  G  Q  A  K  N  I  A  S  D  T  A  A  N  A  K  E  S  A  K  N  K  A  H  D  A  T  D  F  A  K  E  K  A  H  D  A  Y  A  Y  A  S  D  K  A  S  Q  A  T  N  I  A  S  D  M  A  A  D  A  K  E  S  V  K  H  K  A  Y  N  A  K  D  V  A  S  E  K  A  H  D  S  M  N  A  A  S  G  M  G  S  S  A  R  N  K  A  S  D  A  Y  G  F  A  S  D  K  A  S  D  A  K  E  I  G  K  D  K  A  Y  D  A  Y  G  F  V  S  E  K  M  N  R  A  R  D  E  A  S  N  K  A  S  D  A  Y  </first_frame>
            <second_frame>  N  S  L  S  K  V  I  L  G  L  I  G  S  L  P  N  C  R   : S  T  K  T  M  R  K  M  K  P  K  D  *  R  I  E  Q  R  E  L  H  Q  M  Q  E  I  L  L  I  L  L  H  M  :  K  P  K  G  M  V  L  K  R  L  R  R  W  L  M  *  H  L  T  N  L  V  M  L  K  I  M  R  P  R  K  P  I  K  L  W  M  Q  Q  Q  I  P  L  V  M  P  K  K  E  E  K  K  M  R  M  M  L  M  P  M  H  R  R  K  P  A  K  P  Q  K  Q  L  P  S  L  P  R  K  R  L  M  V  L  M  P  M  H  L  I  R  Q  V  K  P  R  T  L  L  Q  I  R  P  P  M  L  K  K  V  P  K  I  R  L  M  M  L  L  I  L  P  K  R  R  H  M  M  L  M  L  M  L  L  T  R  Q  V  K  P  L  T  L  L  L  T  W  P  L  M  P  K  K  A  S  N  I  K  L  T  M  P  K  M  S  P  L  R  R  R  M  I  P  *  M  L  L  P  E  W  V  V  Q  L  G  I  K  H  R  M  L  M  V  L  L  L  I  K  Q  V  M  R  K  K  L  G  K  T  K  R  M  M  L  M  D  L  Y  L  K  R  *  T  E  Q  G  T  R  L  P  I  K  H  R  M  R  M </second_frame>
            <third_frame>   T  V  *  A  K  *  F  L  D  *  L  G  L  F  Q  I  V  A  :  A  P  R  R  C  E  R  *  S  P  K  I  S  G  *  S  K  G  N  C  I  K  C  K  R  F  C  *  F  C  C  T  * :   N  P  K  V  W  F  S  K  G  *  G  D  G  *  C  S  I  *  Q  I  W  *  C  *  K  L  C  V  Q  E  S  Q  S  S  Y  G  C  S  S  R  Y  R  *  S  C  Q  R  K  R  K  R  K  C  V  *  C  L  C  L  C  I  G  E  N  R  P  S  H  K  N  S  C  R  V  C  Q  G  K  G  S  W  C  L  C  L  C  I  *  *  G  R  S  S  Q  E  H  C  F  R  Y  G  R  Q  C  *  R  K  C  Q  K  *  G  S  *  C  Y  *  F  C  Q  R  E  G  T  *  C  L  C  L  C  F  *  Q  G  K  S  S  H  *  H  C  F  *  H  G  R  *  C  Q  R  K  R  Q  T  *  S  L  Q  C  Q  R  C  R  L  *  E  G  A  *  F  H  E  C  C  F  R  N  G  *  F  S  *  E  *  S  I  G  C  L  W  F  C  F  *  *  S  K  *  C  E  R  N  W  E  R  Q  S  V  *  C  L  W  I  C  I  *  K  D  E  P  S  K  G  R  G  F  Q  *  S  I  G  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47026" stop="46971"/>
                    <exon start="45325" stop="45228"/>
                    <exon start="44947" stop="44247"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQSKQSDSWTDWVSSKLSQHQDDAKDEAQRLADRAKGTASNARDSVNSAAHETQRYGSQKAKEMADVASDKFGDAKNYASKKANQAMDAAADTASHAKERGKENAYDAYAYASEKTGQATKTAAEFAKEKAHGAYAYASDKAGQAKNIASDTAANAKESAKNKAHDATDFAKEKAHDAYAYASDKASQATNIASDMAADAKESVKHKAYNAKDVASEKAHDSMNAASGMGSSARNKASDAYGFASDKASDAKEIGKDKAYDAYGFVSEKMNRARDEASNKASDAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55060" PGL_stop="54613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55060" e_stop="54613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="55060" e_stop="54613" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55060" stop="54739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55060" stop="54755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55059" stop="54613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTTCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAGTTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTTGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTTGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCCATTTAATTTAGATTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  F  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  S  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  M  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  C  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  W  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  N  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  I  Y  V  Y  F  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  V  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  N  E  N  G  E  W  R  A  R  F  F  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  T  I  P  F  N  L  D  Y  * </second_frame>
            <third_frame>   K  Y  M  Y  I  S  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  N  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  L  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  T  R  M  E  S  G  E  R  D  F  L  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54873" stop="54613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVYIQFSLALYKTETELYTSVYKAREANENGEWRARFFGERRWQILANVCYGAQLNQTLTIPFNLDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66438" PGL_stop="66856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66438" e_stop="66856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="66438" e_stop="66856" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66438" stop="66856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCTCCAAAAGATCTTTTGATAGAGAAAAGATCCATCAAAAAACAGCTGGAGAAAATTGGGGAGGGTGATCCACCAAAAAGGAAAATCTTACTGTTCTTTCTGAGTCTTCTCAACAAAAATGGCAAATCTATTGTGGCAGAGCACACAGAGAATGGATCTCTGCAGCATGAAGACTCTCTTGAATTTGAAGTGGAATCTCGTCTGAAATGTAATTATAATGATGCTCAAAGAGATATCTTCAACGGCTCTCGACTTCCGGATGAGTTCAAATGTCCTTTATCATCAAGACTAATGTATGATCCCGTTGTCATTGCTTCTGGACAAACATATGAAAGATTTTGGATTGAAAAATGGTTTGCTCAAGGTAATGATACATGTCCAAAAACCAAAAGGAAATTGGTTCATTTGTCTTCAAC</gDNA_template>
            <first_frame> T  S  P  K  D  L  L  I  E  K  R  S  I  K  K  Q  L  E  K  I  G  E  G  D  P  P  K  R  K  I  L  L  F  F  L  S  L  L  N  K  N  G  K  S  I  V  A  E  H  T  E  N  G  S  L  Q  H  E  D  S  L  E  F  E  V  E  S  R  L  K  C  N  Y  N  D  A  Q  R  D  I  F  N  G  S  R  L  P  D  E  F  K  C  P  L  S  S  R  L  M  Y  D  P  V  V  I  A  S  G  Q  T  Y  E  R  F  W  I  E  K  W  F  A  Q  G  N  D  T  C  P  K  T  K  R  K  L  V  H  L  S  S   </first_frame>
            <second_frame>  H  L  Q  K  I  F  *  *  R  K  D  P  S  K  N  S  W  R  K  L  G  R  V  I  H  Q  K  G  K  S  Y  C  S  F  *  V  F  S  T  K  M  A  N  L  L  W  Q  S  T  Q  R  M  D  L  C  S  M  K  T  L  L  N  L  K  W  N  L  V  *  N  V  I  I  M  M  L  K  E  I  S  S  T  A  L  D  F  R  M  S  S  N  V  L  Y  H  Q  D  *  C  M  I  P  L  S  L  L  L  D  K  H  M  K  D  F  G  L  K  N  G  L  L  K  V  M  I  H  V  Q  K  P  K  G  N  W  F  I  C  L  Q  </second_frame>
            <third_frame>   I  S  K  R  S  F  D  R  E  K  I  H  Q  K  T  A  G  E  N  W  G  G  *  S  T  K  K  E  N  L  T  V  L  S  E  S  S  Q  Q  K  W  Q  I  Y  C  G  R  A  H  R  E  W  I  S  A  A  *  R  L  S  *  I  *  S  G  I  S  S  E  M  *  L  *  *  C  S  K  R  Y  L  Q  R  L  S  T  S  G  *  V  Q  M  S  F  I  I  K  T  N  V  *  S  R  C  H  C  F  W  T  N  I  *  K  I  L  D  *  K  M  V  C  S  R  *  *  Y  M  S  K  N  Q  K  E  I  G  S  F  V  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66438" stop="66854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPKDLLIEKRSIKKQLEKIGEGDPPKRKILLFFLSLLNKNGKSIVAEHTENGSLQHEDSLEFEVESRLKCNYNDAQRDIFNGSRLPDEFKCPLSSRLMYDPVVIASGQTYERFWIEKWFAQGNDTCPKTKRKLVHLSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="67823" PGL_stop="68763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67823" e_stop="68763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="67823" e_stop="68763" e_length="941"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67823" stop="68520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67823" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68030" stop="68763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAAAGAAGCTATTGCTATAATCGAAGTGTTGTCCCGCCACCAAAACTGTCACCATAAAATTACCATGTCTGGTGCACTACCTATTCTCCTGGAGATTCTTGATGCCCACAGTAGAGAATTGCAGGAATCAGCCATCAAAATATTATGTAACATGTCAGGAAGTAGCAAAATTGGTTCCTTGATTGCACCTTCAGAGTTGGTCCCAAAATTGGTTCCTTTTCTTGAAGATACAGCACTCGCAAGAAATTGTGTTATCATTTTGCATAGTTTGTGCAACAAAGAAGATGCTAGAATTGCTATAGCTGAAACTGATGGATGCATTGCAGCAGTTGTGAAACTGCTTGAGCGTGAGAGTCGCAAGGACCAGGAACATGCTGTGGATTTTCTTCTTTCTTTATGCCTTCAACGGGTTCAATATTGTCAACTGGTAATGGATGAAGGTGTCATCCCTGAACTCGTCTCTGTATCTATTAATGGAAACAACAAAGCAAAGGCAATGGCTTTGGAGTTGCTGAGACTGCTGAAGGGGGAATTTAGTGATACTGTAGAATCTTACGAACCGGAAATCGACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGGGAAATTTTTCTCAAAACGTAGTTCGACTACTGCCAAAAGGATAAATAGAAAGTGATGCGGTTTGAAGATTTTTGTATGATAGGATGTGTATAATTTCACAGGTTAATCTAGTTTTTGTTAGGGAGAGGCATAGACAGTAAGCATTTATATTGTTATAGCTGCTTGAGAGTTGGGATAGAAGGTGTAATTATTGTTGTTGTATCTAGTTTTTGTTTGTATTTAATTGATTTCACTGGACAACATATTCAGGTGTATAGTGTATTTTGTATGTACAAATATGATAAATTTTCAAAGAGATGG</gDNA_template>
            <first_frame> S  K  E  A  I  A  I  I  E  V  L  S  R  H  Q  N  C  H  H  K  I  T  M  S  G  A  L  P  I  L  L  E  I  L  D  A  H  S  R  E  L  Q  E  S  A  I  K  I  L  C  N  M  S  G  S  S  K  I  G  S  L  I  A  P  S  E  L  V  P  K  L  V  P  F  L  E  D  T  A  L  A  R  N  C  V  I  I  L  H  S  L  C  N  K  E  D  A  R  I  A  I  A  E  T  D  G  C  I  A  A  V  V  K  L  L  E  R  E  S  R  K  D  Q  E  H  A  V  D  F  L  L  S  L  C  L  Q  R  V  Q  Y  C  Q  L  V  M  D  E  G  V  I  P  E  L  V  S  V  S  I  N  G  N  N  K  A  K  A  M  A  L  E  L  L  R  L  L  K  G  E  F  S  D  T  V  E  S  Y  E  P  E  I  D  I  P  K  P  P  T  S  D  F  T  Q  Q  K  S  H  S  E  G  T  G  I  F  G  K  F  F  S  K  R  S  S  T  T  A  K  R  I  N  R  K  *  C  G  L  K  I  F  V  *  *  D  V  Y  N  F  T  G  *  S  S  F  C  *  G  E  A  *  T  V  S  I  Y  I  V  I  A  A  *  E  L  G  *  K  V  *  L  L  L  L  Y  L  V  F  V  C  I  *  L  I  S  L  D  N  I  F  R  C  I  V  Y  F  V  C  T  N  M  I  N  F  Q  R  D   </first_frame>
            <second_frame>  L  K  K  L  L  L  *  S  K  C  C  P  A  T  K  T  V  T  I  K  L  P  C  L  V  H  Y  L  F  S  W  R  F  L  M  P  T  V  E  N  C  R  N  Q  P  S  K  Y  Y  V  T  C  Q  E  V  A  K  L  V  P  *  L  H  L  Q  S  W  S  Q  N  W  F  L  F  L  K  I  Q  H  S  Q  E  I  V  L  S  F  C  I  V  C  A  T  K  K  M  L  E  L  L  *  L  K  L  M  D  A  L  Q  Q  L  *  N  C  L  S  V  R  V  A  R  T  R  N  M  L  W  I  F  F  F  L  Y  A  F  N  G  F  N  I  V  N  W  *  W  M  K  V  S  S  L  N  S  S  L  Y  L  L  M  E  T  T  K  Q  R  Q  W  L  W  S  C  *  D  C  *  R  G  N  L  V  I  L  *  N  L  T  N  R  K  S  T  F  L  N  P  L  P  L  T  L  L  N  R  N  L  I  P  K  E  Q  E  F  L  G  N  F  S  Q  N  V  V  R  L  L  P  K  G  *  I  E  S  D  A  V  *  R  F  L  Y  D  R  M  C  I  I  S  Q  V  N  L  V  F  V  R  E  R  H  R  Q  *  A  F  I  L  L  *  L  L  E  S  W  D  R  R  C  N  Y  C  C  C  I  *  F  L  F  V  F  N  *  F  H  W  T  T  Y  S  G  V  *  C  I  L  Y  V  Q  I  *  *  I  F  K  E  M  </second_frame>
            <third_frame>   *  R  S  Y  C  Y  N  R  S  V  V  P  P  P  K  L  S  P  *  N  Y  H  V  W  C  T  T  Y  S  P  G  D  S  *  C  P  Q  *  R  I  A  G  I  S  H  Q  N  I  M  *  H  V  R  K  *  Q  N  W  F  L  D  C  T  F  R  V  G  P  K  I  G  S  F  S  *  R  Y  S  T  R  K  K  L  C  Y  H  F  A  *  F  V  Q  Q  R  R  C  *  N  C  Y  S  *  N  *  W  M  H  C  S  S  C  E  T  A  *  A  *  E  S  Q  G  P  G  T  C  C  G  F  S  S  F  F  M  P  S  T  G  S  I  L  S  T  G  N  G  *  R  C  H  P  *  T  R  L  C  I  Y  *  W  K  Q  Q  S  K  G  N  G  F  G  V  A  E  T  A  E  G  G  I  *  *  Y  C  R  I  L  R  T  G  N  R  H  S  *  T  P  Y  L  *  L  Y  S  T  E  I  S  F  R  R  N  R  N  F  W  E  I  F  L  K  T  *  F  D  Y  C  Q  K  D  K  *  K  V  M  R  F  E  D  F  C  M  I  G  C  V  *  F  H  R  L  I  *  F  L  L  G  R  G  I  D  S  K  H  L  Y  C  Y  S  C  L  R  V  G  I  E  G  V  I  I  V  V  V  S  S  F  C  L  Y  L  I  D  F  T  G  Q  H  I  Q  V  Y  S  V  F  C  M  Y  K  Y  D  K  F  S  K  R  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67823" stop="68518"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKEAIAIIEVLSRHQNCHHKITMSGALPILLEILDAHSRELQESAIKILCNMSGSSKIGSLIAPSELVPKLVPFLEDTALARNCVIILHSLCNKEDARIAIAETDGCIAAVVKLLERESRKDQEHAVDFLLSLCLQRVQYCQLVMDEGVIPELVSVSINGNNKAKAMALELLRLLKGEFSDTVESYEPEIDIPKPPTSDFTQQKSHSEGTGIFGKFFSKRSSTTAKRINRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="73012" PGL_stop="70337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73012" e_stop="72753"/>
            <exon e_start="72667" e_stop="72572"/>
            <exon e_start="72204" e_stop="71828"/>
            <exon e_start="71738" e_stop="71651"/>
            <exon e_start="71429" e_stop="71300"/>
            <exon e_start="71171" e_stop="70337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.180" acc_prob="0.684" e_score="0.985"/>
          <exon-intron don_prob="0.637" acc_prob="0.829" e_score="0.938"/>
          <exon-intron don_prob="1.000" acc_prob="0.919" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="0.559" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="73012" e_stop="72753" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.180" acc_prob="0.684">
            <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="72667" e_stop="72572" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.829">
            <gDNA_intron_boundary i_start="72571" i_stop="72205" i_length="367"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="72204" e_stop="71828" e_length="377"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.919">
            <gDNA_intron_boundary i_start="71827" i_stop="71739" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71738" e_stop="71651" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.559">
            <gDNA_intron_boundary i_start="71650" i_stop="71430" i_length="221"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71429" e_stop="71300" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.938">
            <gDNA_intron_boundary i_start="71299" i_stop="71172" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="71171" e_stop="70337" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73012" stop="72753"/>
              <exon start="72667" stop="72572"/>
              <exon start="72204" stop="71832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73011" stop="72753"/>
              <exon start="72667" stop="72572"/>
              <exon start="72204" stop="72052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71896" stop="71828"/>
              <exon start="71738" stop="71651"/>
              <exon start="71429" stop="71335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71896" stop="71828"/>
              <exon start="71738" stop="71651"/>
              <exon start="71429" stop="71335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71422" stop="71300"/>
              <exon start="71171" stop="70613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71422" stop="71300"/>
              <exon start="71171" stop="70619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71421" stop="71300"/>
              <exon start="71171" stop="70574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71300"/>
              <exon start="71171" stop="70638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71300"/>
              <exon start="71171" stop="70867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71059" stop="70337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG : CTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGG : GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTGTGCATCTGTTTGCAAATCGTGGAGGGGAATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAACAG : CCGGGTCCCCGTGAATCCCCAATCCAGTGCTTTATTAAACGGGACAGAGCTAATTCAGTTTATCGTCTCTACTTTGGCATGATTCCAT : CTGAGGATGAGAGGGATAAACTATTGTTGTCTGCCAAAAAAATCAGAAGGGCAACAAACACAGACTTTGTGATATCATTTGTTGCAGATGATTTTTCTCGAGCTAGCAATATGTATGCCGGTAAACTGAG : GTCTAACTTTCTTGGGACCAAGTTCTCCATACATGATAGCCAACCTCCAAGTGATGCAGCCATTCAACAACCTGGTCGTCTCAGTCGGAGATTTCATGCAAAACAAGTTTCTCCAAGAGTTCCTGCGTGCAACTATAGAGTAGCTACCATTTCGTATGAACTCAATGTCCTTCGTACCAGAGGACCTAGGAGAATGCATTCTGCCATGCACTCTATCCCCTTGTCTTCAATCCAGGAGGGTGGCAGTGCTCCAACACCTAAATCATTCCCACAATCTTTTGATGAGAAGTCATTTTCTGCACCACTTGCAATAGCAAAGGAGTCAGCTATGGATATCAGCTCCTCTGGCATTTCAAGGTCAGCAGTAACGGCGACTTCTCAAGACATACTTGTGCTAAAAAACAAGGCTCCTAGGTGGCATGAACAATTGCAGTGCTGGTGCTTAAATTTTAAAGGCCGTGTTACAGTTGCTTCTGTGAAAAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATATACCAGTCGCAGAACAAGAAAAAGTAATTTTACAGTTTGGAAAAATTGGGAAAGACATCTTCACCATGGACTACCGCTATCCACTTTCTGCTTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAGCCAGCCTGTGAATGATTTCGTGCAGATTGCAAATCAAGATAAGCTCCTTTTCTTCTCTTTGGTTGCTTAGTAATGTTCCAAATTCATGTAGAATCCCTGAGGAAGTTCTCAACGCATGACCTTTGTATAAATGAGAATATTCGTTGTGCCATGTGCCAGTTTCTCCAATAGCATTCTCAT</gDNA_template>
            <first_frame> G  K  L  *  *  I  R  T  Q  R  S  P  F  R  L  P  S  S  *  H  F  S  F  N  L  L  A  E  L  T  A  V  F  R  W  W  C  H  W  C  F  R  R  H  D  M  K  S  K  A  S  P  I  Q  C  S  T  S  F  A  A  F  F  P  S  S  I  S  A  S  R  S  L  L  S  T  I  S  S  S  L  *  L  V  F  L  S :   C  M  S  A  L  L  L  V  F  V  G  D  S  T  K  M  P  Q  D  R  T  F  *  L  F  F  R  F  F  I  P  G :   E  V  A  V  D  V  I  D  R  N  V  F  E  E  H  C  S  *  A  E  G  D  E  R  W  Y  R  E  Y  I  K  E  G  N  R  K  K  A  L  E  Q  Q  N  P  V  T  Y  S  P  *  C  G  P  F  *  S  N  *  T  R  A  M  G  K  F  T  T  G  T  S  S  *  Y  H  P  *  G  *  R  E  *  V  I  M  A  C  S  I  R  P  S  L  L  C  I  C  L  Q  I  V  E  G  N  Y  Q  G  D  C  *  D  S  *  G  M  W  *  A  Y  L  S  H  F  T  E  T   : A  G  S  P  *  I  P  N  P  V  L  Y  *  T  G  Q  S  *  F  S  L  S  S  L  L  W  H  D  S  I :   *  G  *  E  G  *  T  I  V  V  C  Q  K  N  Q  K  G  N  K  H  R  L  C  D  I  I  C  C  R  *  F  F  S  S  *  Q  Y  V  C  R  *  T  E  :  V  *  L  S  W  D  Q  V  L  H  T  *  *  P  T  S  K  *  C  S  H  S  T  T  W  S  S  Q  S  E  I  S  C  K  T  S  F  S  K  S  S  C  V  Q  L  *  S  S  Y  H  F  V  *  T  Q  C  P  S  Y  Q  R  T  *  E  N  A  F  C  H  A  L  Y  P  L  V  F  N  P  G  G  W  Q  C  S  N  T  *  I  I  P  T  I  F  *  *  E  V  I  F  C  T  T  C  N  S  K  G  V  S  Y  G  Y  Q  L  L  W  H  F  K  V  S  S  N  G  D  F  S  R  H  T  C  A  K  K  Q  G  S  *  V  A  *  T  I  A  V  L  V  L  K  F  *  R  P  C  Y  S  C  F  C  E  K  F  S  A  S  G  S  S  *  S  I  S  Q  Y  T  S  R  R  T  R  K  S  N  F  T  V  W  K  N  W  E  R  H  L  H  H  G  L  P  L  S  T  F  C  F  P  S  F  C  N  L  L  E  Q  L  *  H  E  A  S  L  *  M  I  S  C  R  L  Q  I  K  I  S  S  F  S  S  L  W  L  L  S  N  V  P  N  S  C  R  I  P  E  E  V  L  N  A  *  P  L  Y  K  *  E  Y  S  L  C  H  V  P  V  S  P  I  A  F  S  </first_frame>
            <second_frame>  E  N  F  D  R  Y  A  H  R  E  A  P  F  V  F  L  A  P  D  I  F  P  S  I  C  W  R  N  *  R  R  F  F  G  G  G  A  T  G  V  S  G  D  M  T  *  S  L  K  R  R  R  S  S  V  P  P  H  S  P  R  F  F  L  L  R  S  L  H  P  A  A  C  F  Q  R  F  H  L  L  C  N  S  C  F  L   : A  A  C  Q  L  C  F  W  F  S  S  E  I  V  P  K  C  H  K  I  A  H  F  D  C  F  F  G  F  L  F  Q   : G  K  L  Q  L  M  *  L  I  E  M  S  L  K  S  I  V  R  E  L  R  E  M  K  D  G  I  G  N  I  S  R  R  G  T  E  R  K  H  W  S  N  R  T  R  S  H  I  V  P  D  V  A  L  S  D  Q  I  E  Q  G  Q  W  A  N  L  P  P  E  L  L  L  D  I  I  R  R  V  E  E  S  E  L  S  W  P  A  R  S  A  L  L  F  C  A  S  V  C  K  S  W  R  G  I  T  K  E  I  V  K  T  P  E  E  C  G  R  L  T  F  P  I  S  L  K  Q  :  P  G  P  R  E  S  P  I  Q  C  F  I  K  R  D  R  A  N  S  V  Y  R  L  Y  F  G  M  I  P   : S  E  D  E  R  D  K  L  L  L  S  A  K  K  I  R  R  A  T  N  T  D  F  V  I  S  F  V  A  D  D  F  S  R  A  S  N  M  Y  A  G  K  L  R :   S  N  F  L  G  T  K  F  S  I  H  D  S  Q  P  P  S  D  A  A  I  Q  Q  P  G  R  L  S  R  R  F  H  A  K  Q  V  S  P  R  V  P  A  C  N  Y  R  V  A  T  I  S  Y  E  L  N  V  L  R  T  R  G  P  R  R  M  H  S  A  M  H  S  I  P  L  S  S  I  Q  E  G  G  S  A  P  T  P  K  S  F  P  Q  S  F  D  E  K  S  F  S  A  P  L  A  I  A  K  E  S  A  M  D  I  S  S  S  G  I  S  R  S  A  V  T  A  T  S  Q  D  I  L  V  L  K  N  K  A  P  R  W  H  E  Q  L  Q  C  W  C  L  N  F  K  G  R  V  T  V  A  S  V  K  N  F  Q  L  V  A  A  V  D  P  S  H  N  I  P  V  A  E  Q  E  K  V  I  L  Q  F  G  K  I  G  K  D  I  F  T  M  D  Y  R  Y  P  L  S  A  F  Q  A  F  A  I  C  L  S  S  F  D  T  K  P  A  C  E  *  F  R  A  D  C  K  S  R  *  A  P  F  L  L  F  G  C  L  V  M  F  Q  I  H  V  E  S  L  R  K  F  S  T  H  D  L  C  I  N  E  N  I  R  C  A  M  C  Q  F  L  Q  *  H  S  H </second_frame>
            <third_frame>   K  T  L  I  D  T  H  T  E  K  P  L  S  S  S  *  L  L  T  F  F  L  Q  F  V  G  G  I  N  G  G  F  S  V  V  V  P  L  V  F  P  A  T  *  H  E  V  *  S  V  A  D  P  V  F  H  L  I  R  R  V  F  S  F  F  D  L  C  I  P  Q  L  A  F  N  D  F  I  F  F  V  T  R  V  S  *  :  L  H  V  S  S  A  F  G  F  R  R  R  *  Y  Q  N  A  T  R  S  H  I  L  I  V  F  S  V  F  Y  S  R  :  G  S  C  S  *  C  D  *  *  K  C  L  *  R  A  L  F  V  S  *  G  R  *  K  M  V  *  G  I  Y  Q  G  G  E  Q  K  E  S  I  G  A  T  E  P  G  H  I  *  S  L  M  W  P  F  L  I  K  L  N  K  G  N  G  Q  I  Y  H  R  N  F  F  L  I  S  S  V  G  L  K  R  V  S  Y  H  G  L  L  D  P  P  F  S  F  V  H  L  F  A  N  R  G  G  E  L  P  R  R  L  L  R  L  L  R  N  V  V  G  L  P  F  P  F  H  *  N  S :   R  V  P  V  N  P  Q  S  S  A  L  L  N  G  T  E  L  I  Q  F  I  V  S  T  L  A  *  F  H  :  L  R  M  R  G  I  N  Y  C  C  L  P  K  K  S  E  G  Q  Q  T  Q  T  L  *  Y  H  L  L  Q  M  I  F  L  E  L  A  I  C  M  P  V  N  *   : G  L  T  F  L  G  P  S  S  P  Y  M  I  A  N  L  Q  V  M  Q  P  F  N  N  L  V  V  S  V  G  D  F  M  Q  N  K  F  L  Q  E  F  L  R  A  T  I  E  *  L  P  F  R  M  N  S  M  S  F  V  P  E  D  L  G  E  C  I  L  P  C  T  L  S  P  C  L  Q  S  R  R  V  A  V  L  Q  H  L  N  H  S  H  N  L  L  M  R  S  H  F  L  H  H  L  Q  *  Q  R  S  Q  L  W  I  S  A  P  L  A  F  Q  G  Q  Q  *  R  R  L  L  K  T  Y  L  C  *  K  T  R  L  L  G  G  M  N  N  C  S  A  G  A  *  I  L  K  A  V  L  Q  L  L  L  *  K  I  F  S  *  W  Q  Q  L  I  H  L  T  I  Y  Q  S  Q  N  K  K  K  *  F  Y  S  L  E  K  L  G  K  T  S  S  P  W  T  T  A  I  H  F  L  L  S  K  L  L  Q  S  A  *  A  A  L  T  R  S  Q  P  V  N  D  F  V  Q  I  A  N  Q  D  K  L  L  F  F  S  L  V  A  *  *  C  S  K  F  M  *  N  P  *  G  S  S  Q  R  M  T  F  V  *  M  R  I  F  V  V  P  C  A  S  F  S  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72184" stop="71828"/>
                    <exon start="71738" stop="71651"/>
                    <exon start="71429" stop="71300"/>
                    <exon start="71171" stop="70502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEMSLKSIVRELREMKDGIGNISRRGTERKHWSNRTRSHIVPDVALSDQIEQGQWANLPPELLLDIIRRVEESELSWPARSALLFCASVCKSWRGITKEIVKTPEECGRLTFPISLKQPGPRESPIQCFIKRDRANSVYRLYFGMIPSEDERDKLLLSAKKIRRATNTDFVISFVADDFSRASNMYAGKLRSNFLGTKFSIHDSQPPSDAAIQQPGRLSRRFHAKQVSPRVPACNYRVATISYELNVLRTRGPRRMHSAMHSIPLSSIQEGGSAPTPKSFPQSFDEKSFSAPLAIAKESAMDISSSGISRSAVTATSQDILVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNIPVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72873" stop="72753"/>
                    <exon start="72667" stop="72572"/>
                    <exon start="72204" stop="72185"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKRRRSSVPPHSPRFFLLRSLHPAACFQRFHLLCNSCFLAACQLCFWFSSEIVPKCHKIAHFDCFFGFLFQGKLQLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73010" e_stop="72753"/>
            <exon e_start="72204" e_stop="71925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.180" acc_prob="0.829" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73010" e_stop="72753" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.180" acc_prob="0.829">
            <gDNA_intron_boundary i_start="72752" i_stop="72205" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72204" e_stop="71925" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73010" stop="72753"/>
              <exon start="72204" stop="71925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG : GGAAGTTGCAGTTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGTATAGGGAATATATCAAGGAGGGGAACAGAAAGAAAGCATTGGAGCAACAGAACCCGGTCACATATAGTCCCTGATGTGGCCCTTTCTGATCAAATTGAACAAGGGCAATGGGCAAATTTACCACCGGAACTTCTTCTTGATATCATCCGTAGGGTTGAAGAGAGTGAGTTATCATGGCCTGCTCGATCCGCCCTTCTCTTTTG</gDNA_template>
            <first_frame> K  T  L  I  D  T  H  T  E  K  P  L  S  S  S  *  L  L  T  F  F  L  Q  F  V  G  G  I  N  G  G  F  S  V  V  V  P  L  V  F  P  A  T  *  H  E  V  *  S  V  A  D  P  V  F  H  L  I  R  R  V  F  S  F  F  D  L  C  I  P  Q  L  A  F  N  D  F  I  F  F  V  T  R  V  S  *  :  G  S  C  S  *  C  D  *  *  K  C  L  *  R  A  L  F  V  S  *  G  R  *  K  M  V  *  G  I  Y  Q  G  G  E  Q  K  E  S  I  G  A  T  E  P  G  H  I  *  S  L  M  W  P  F  L  I  K  L  N  K  G  N  G  Q  I  Y  H  R  N  F  F  L  I  S  S  V  G  L  K  R  V  S  Y  H  G  L  L  D  P  P  F  S  F  </first_frame>
            <second_frame>  K  L  *  *  I  R  T  Q  R  S  P  F  R  L  P  S  S  *  H  F  S  F  N  L  L  A  E  L  T  A  V  F  R  W  W  C  H  W  C  F  R  R  H  D  M  K  S  K  A  S  P  I  Q  C  S  T  S  F  A  A  F  F  P  S  S  I  S  A  S  R  S  L  L  S  T  I  S  S  S  L  *  L  V  F  L  R :   E  V  A  V  D  V  I  D  R  N  V  F  E  E  H  C  S  *  A  E  G  D  E  R  W  Y  R  E  Y  I  K  E  G  N  R  K  K  A  L  E  Q  Q  N  P  V  T  Y  S  P  *  C  G  P  F  *  S  N  *  T  R  A  M  G  K  F  T  T  G  T  S  S  *  Y  H  P  *  G  *  R  E  *  V  I  M  A  C  S  I  R  P  S  L  L </second_frame>
            <third_frame>   N  F  D  R  Y  A  H  R  E  A  P  F  V  F  L  A  P  D  I  F  P  S  I  C  W  R  N  *  R  R  F  F  G  G  G  A  T  G  V  S  G  D  M  T  *  S  L  K  R  R  R  S  S  V  P  P  H  S  P  R  F  F  L  L  R  S  L  H  P  A  A  C  F  Q  R  F  H  L  L  C  N  S  C  F  L   : G  K  L  Q  L  M  *  L  I  E  M  S  L  K  S  I  V  R  E  L  R  E  M  K  D  G  I  G  N  I  S  R  R  G  T  E  R  K  H  W  S  N  R  T  R  S  H  I  V  P  D  V  A  L  S  D  Q  I  E  Q  G  Q  W  A  N  L  P  P  E  L  L  L  D  I  I  R  R  V  E  E  S  E  L  S  W  P  A  R  S  A  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72184" stop="71927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEMSLKSIVRELREMKDGIGNISRRGTERKHWSNRTRSHIVPDVALSDQIEQGQWANLPPELLLDIIRRVEESELSWPARSALLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73011" e_stop="72753"/>
            <exon e_start="72667" e_stop="72572"/>
            <exon e_start="72193" e_stop="72131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.180" acc_prob="0.684" e_score="0.985"/>
          <exon-intron don_prob="0.637" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="73011" e_stop="72753" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.180" acc_prob="0.684">
            <gDNA_intron_boundary i_start="72752" i_stop="72668" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="72667" e_stop="72572" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72571" i_stop="72194" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72193" e_stop="72131" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73011" stop="72753"/>
              <exon start="72667" stop="72572"/>
              <exon start="72193" stop="72131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACTTTGATAGATACGCACACAGAGAAGCCCCTTTCGTCTTCCTAGCTCCTGACATTTTTCCTTCAATTTGTTGGCGGAATTAACGGCGGTTTTTCGGTGGTGGTGCCACTGGTGTTTCCGGCGACATGACATGAAGTCTAAAGCGTCGCCGATCCAGTGTTCCACCTCATTCGCCGCGTTTTTTCCTTCTTCGATCTCTGCATCCCGCAGCTTGCTTTCAACGATTTCATCTTCTTTGTAACTCGTGTTTCTTAG : CTGCATGTCAGCTCTGCTTTTGGTTTTCGTCGGAGATAGTACCAAAATGCCACAAGATCGCACATTTTGATTGTTTTTTCGGTTTTTTATTCCAGG : TTGATGTGATTGATAGAAATGTCTTTGAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGAT</gDNA_template>
            <first_frame> E  N  F  D  R  Y  A  H  R  E  A  P  F  V  F  L  A  P  D  I  F  P  S  I  C  W  R  N  *  R  R  F  F  G  G  G  A  T  G  V  S  G  D  M  T  *  S  L  K  R  R  R  S  S  V  P  P  H  S  P  R  F  F  L  L  R  S  L  H  P  A  A  C  F  Q  R  F  H  L  L  C  N  S  C  F  L   : A  A  C  Q  L  C  F  W  F  S  S  E  I  V  P  K  C  H  K  I  A  H  F  D  C  F  F  G  F  L  F  Q   : V  D  V  I  D  R  N  V  F  E  E  H  C  S  *  A  E  G  D  E  R  </first_frame>
            <second_frame>  K  T  L  I  D  T  H  T  E  K  P  L  S  S  S  *  L  L  T  F  F  L  Q  F  V  G  G  I  N  G  G  F  S  V  V  V  P  L  V  F  P  A  T  *  H  E  V  *  S  V  A  D  P  V  F  H  L  I  R  R  V  F  S  F  F  D  L  C  I  P  Q  L  A  F  N  D  F  I  F  F  V  T  R  V  S  *  :  L  H  V  S  S  A  F  G  F  R  R  R  *  Y  Q  N  A  T  R  S  H  I  L  I  V  F  S  V  F  Y  S  R  :  L  M  *  L  I  E  M  S  L  K  S  I  V  R  E  L  R  E  M  K  D </second_frame>
            <third_frame>   K  L  *  *  I  R  T  Q  R  S  P  F  R  L  P  S  S  *  H  F  S  F  N  L  L  A  E  L  T  A  V  F  R  W  W  C  H  W  C  F  R  R  H  D  M  K  S  K  A  S  P  I  Q  C  S  T  S  F  A  A  F  F  P  S  S  I  S  A  S  R  S  L  L  S  T  I  S  S  S  L  *  L  V  F  L  S :   C  M  S  A  L  L  L  V  F  V  G  D  S  T  K  M  P  Q  D  R  T  F  *  L  F  F  R  F  F  I  P  G :   *  C  D  *  *  K  C  L  *  R  A  L  F  V  S  *  G  R  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72873" stop="72753"/>
                    <exon start="72667" stop="72572"/>
                    <exon start="72193" stop="72150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKRRRSSVPPHSPRFFLLRSLHPAACFQRFHLLCNSCFLAACQLCFWFSSEIVPKCHKIAHFDCFFGFLFQVDVIDRNVFEEHCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="86774" PGL_stop="86376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86774" e_stop="86376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86774" e_stop="86376" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86774" stop="86376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</gDNA_template>
            <first_frame> L  G  W  L  *  G  V  P  L  *  N  *  M  E  *  V  V  C  L  G  N  L  E  C  T  H  P  *  C  *  S  N  E  T  E  E  V  Q  F  V  A  *  *  R  K  C  C  S  E  M  L  *  A  *  F  H  L  D  R  W  D  K  D  *  F  L  G  Q  L  *  T  R  G  V  D  Q  H  L  G  E  R  L  L  D  I  W  E  Y  L  G  F  *  V  *  S  Y  S  S  K  Q  S  L  S  H  F  V  Q  A  R  *  E  V  L  E  S  R  F  L  G  F  P  C  T  G  K  *  Q  W  Q  S  C  Y  P </first_frame>
            <second_frame>  *  V  G  C  K  G  C  P  C  K  I  E  W  S  R  W  F  V  W  E  I  W  S  V  H  T  L  N  V  E  V  M  R  L  K  K  C  S  L  W  H  D  K  G  N  V  V  Q  R  C  C  K  P  S  S  I  *  T  G  G  T  R  I  N  S  *  A  N  C  K  Q  E  V  S  I  N  I  *  G  N  V  C  W  I  F  G  S  I  *  A  F  E  F  K  V  I  A  Q  S  K  V  *  V  I  L  C  R  Q  G  R  K  F  W  N  H  G  F  W  D  S  L  V  L  E  N  S  S  G  S  L  V  I   </second_frame>
            <third_frame>   R  L  A  V  R  G  A  P  V  K  L  N  G  V  G  G  L  S  G  K  S  G  V  Y  T  P  L  M  L  K  *  *  D  *  R  S  A  V  C  G  M  I  K  E  M  L  F  R  D  A  V  S  L  V  P  F  R  Q  V  G  Q  G  L  I  P  R  P  T  V  N  K  R  C  R  S  T  F  R  G  T  F  A  G  Y  L  G  V  F  R  L  L  S  L  K  L  *  L  K  A  K  S  E  S  F  C  A  G  K  V  G  S  F  G  I  T  V  S  G  I  P  L  Y  W  K  I  A  V  A  V  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="86738" PGL_stop="87494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86738" e_stop="87038"/>
            <exon e_start="87129" e_stop="87281"/>
            <exon e_start="87343" e_stop="87494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.953"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.730"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="86738" e_stop="87038" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87039" i_stop="87128" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="87129" e_stop="87281" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87282" i_stop="87342" i_length="61"/>
          </intron>
          <exon e_serial="3" e_score="0.730">
            <gDNA_exon_boundary e_start="87343" e_stop="87494" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86738" stop="87038"/>
              <exon start="87129" stop="87281"/>
              <exon start="87343" stop="87494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575955" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATTTTACAGGGGCACCCCTTACAGCCAACCTAAGGACAAATGTAGGCACTAGGATCAGTAAAATTGCTTTCAATTCCACAGTTGAAATAGTAATCCAAGACACCAACTTGTTATCGGTGGAATCACATCCTTTCCATCTCCATGGCTATAACTTCTTTGTGGTTGGAACTGGCGTAGGAAATTTTGACCCCAAAAAAGATCCAGCAAAGTATAACTTGATCGATCCTATAGAAAGAAATACTGTTGGTGTTCCAACTGGTGGTTGGACTGCTATTCGATTCAGGGCTGATAATCCAG : GGGTCTGGTTTTTCCACTGTCATCTGGAGTTGCATACAGGCTGGGGACTGAAAACAGCATTTTTAGTGGAAGATGGACCAGGATCAGATCATAATGTTCTGCCTCCACCAAAGGATCTTCCAACTTGCTAACTTCACAAGGCTTTCTGTTTTC : CAAAGGCTTCGAGGATCATATAAATTTAGAAAGGAGTTTCCATCCAGAAAATTAAAGGAATTCGTTTGTAATTTGAGCTGTCATAAACTTCCACACAAAAAAATGTGGTTTTGGATTGTTTTTTTTTCTTTTGTTGTCAATTTGGATTGTGT</gDNA_template>
            <first_frame> F  N  F  T  G  A  P  L  T  A  N  L  R  T  N  V  G  T  R  I  S  K  I  A  F  N  S  T  V  E  I  V  I  Q  D  T  N  L  L  S  V  E  S  H  P  F  H  L  H  G  Y  N  F  F  V  V  G  T  G  V  G  N  F  D  P  K  K  D  P  A  K  Y  N  L  I  D  P  I  E  R  N  T  V  G  V  P  T  G  G  W  T  A  I  R  F  R  A  D  N  P   : G  V  W  F  F  H  C  H  L  E  L  H  T  G  W  G  L  K  T  A  F  L  V  E  D  G  P  G  S  D  H  N  V  L  P  P  P  K  D  L  P  T  C  *  L  H  K  A  F  C  F   : P  K  A  S  R  I  I  *  I  *  K  G  V  S  I  Q  K  I  K  G  I  R  L  *  F  E  L  S  *  T  S  T  Q  K  N  V  V  L  D  C  F  F  F  F  C  C  Q  F  G  L  C </first_frame>
            <second_frame>  S  I  L  Q  G  H  P  L  Q  P  T  *  G  Q  M  *  A  L  G  S  V  K  L  L  S  I  P  Q  L  K  *  *  S  K  T  P  T  C  Y  R  W  N  H  I  L  S  I  S  M  A  I  T  S  L  W  L  E  L  A  *  E  I  L  T  P  K  K  I  Q  Q  S  I  T  *  S  I  L  *  K  E  I  L  L  V  F  Q  L  V  V  G  L  L  F  D  S  G  L  I  I  Q  :  G  S  G  F  S  T  V  I  W  S  C  I  Q  A  G  D  *  K  Q  H  F  *  W  K  M  D  Q  D  Q  I  I  M  F  C  L  H  Q  R  I  F  Q  L  A  N  F  T  R  L  S  V  F  :  Q  R  L  R  G  S  Y  K  F  R  K  E  F  P  S  R  K  L  K  E  F  V  C  N  L  S  C  H  K  L  P  H  K  K  M  W  F  W  I  V  F  F  S  F  V  V  N  L  D  C   </second_frame>
            <third_frame>   Q  F  Y  R  G  T  P  Y  S  Q  P  K  D  K  C  R  H  *  D  Q  *  N  C  F  Q  F  H  S  *  N  S  N  P  R  H  Q  L  V  I  G  G  I  T  S  F  P  S  P  W  L  *  L  L  C  G  W  N  W  R  R  K  F  *  P  Q  K  R  S  S  K  V  *  L  D  R  S  Y  R  K  K  Y  C  W  C  S  N  W  W  L  D  C  Y  S  I  Q  G  *  *  S  R :   G  L  V  F  P  L  S  S  G  V  A  Y  R  L  G  T  E  N  S  I  F  S  G  R  W  T  R  I  R  S  *  C  S  A  S  T  K  G  S  S  N  L  L  T  S  Q  G  F  L  F  S :   K  G  F  E  D  H  I  N  L  E  R  S  F  H  P  E  N  *  R  N  S  F  V  I  *  A  V  I  N  F  H  T  K  K  C  G  F  G  L  F  F  F  L  L  L  S  I  W  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86738" stop="87038"/>
                    <exon start="87129" stop="87259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFTGAPLTANLRTNVGTRISKIAFNSTVEIVIQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPKKDPAKYNLIDPIERNTVGVPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFLVEDGPGSDHNVLPPPKDLPTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="88116" PGL_stop="92524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88116" e_stop="88331"/>
            <exon e_start="88557" e_stop="88643"/>
            <exon e_start="89367" e_stop="89477"/>
            <exon e_start="89736" e_stop="89787"/>
            <exon e_start="90079" e_stop="90216"/>
            <exon e_start="90716" e_stop="90814"/>
            <exon e_start="91146" e_stop="91243"/>
            <exon e_start="91630" e_stop="91737"/>
            <exon e_start="91846" e_stop="91927"/>
            <exon e_start="92166" e_stop="92524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88116" e_stop="88331" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88332" i_stop="88556" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88557" e_stop="88643" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89367" e_stop="89477" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89736" e_stop="89787" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90079" e_stop="90216" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90716" e_stop="90814" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91146" e_stop="91243" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91630" e_stop="91737" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="91846" e_stop="91927" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92166" e_stop="92524" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88116" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88182" stop="88331"/>
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              <exon start="90079" stop="90216"/>
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              <exon start="91146" stop="91225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88182" stop="88331"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88182" stop="88331"/>
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              <exon start="90079" stop="90216"/>
              <exon start="90716" stop="90814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88186" stop="88331"/>
              <exon start="88557" stop="88643"/>
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              <exon start="90716" stop="90793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88186" stop="88331"/>
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              <exon start="89367" stop="89474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281532" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88188" stop="88331"/>
              <exon start="88557" stop="88643"/>
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              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88189" stop="88331"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88189" stop="88331"/>
              <exon start="88557" stop="88643"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88190" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88191" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90079" stop="90216"/>
              <exon start="90716" stop="90814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88191" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90079" stop="90216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88192" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88193" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88193" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88194" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90079" stop="90124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88195" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90079" stop="90216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88199" stop="88331"/>
              <exon start="88557" stop="88643"/>
              <exon start="89367" stop="89477"/>
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              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88233" stop="88331"/>
              <exon start="88557" stop="88643"/>
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              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88242" stop="88331"/>
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              <exon start="91146" stop="91173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88242" stop="88331"/>
              <exon start="88557" stop="88643"/>
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              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88252" stop="88331"/>
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              <exon start="91846" stop="91925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88254" stop="88331"/>
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              <exon start="90716" stop="90807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88261" stop="88331"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88277" stop="88331"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88299" stop="88331"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88299" stop="88331"/>
              <exon start="88557" stop="88643"/>
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              <exon start="90716" stop="90808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88593" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88617" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
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              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90113" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
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              <exon start="92166" stop="92390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606471" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
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              <exon start="92166" stop="92524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
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              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91215" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91912" stop="91927"/>
              <exon start="92166" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91915" stop="91927"/>
              <exon start="92166" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG : ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</gDNA_template>
            <first_frame> F  E  L  I  V  E  A  Q  Y  P  V  *  V  V  Q  W  T  T  R  T  A  Q  S  N  K  K  R  T  S  V  E  S  K  K  D  L  L  F  A  N  P  *  *  F  C  H  Q  I  E  D  G  S  I  V  Y  D  L  V  L  L  S  L  N  L  L  K  I  S  A  S  Q  S  :  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D  L  R  W  N  R  K  K  Y </first_frame>
            <second_frame>  S  N  L  L  *  R  H  N  I  Q  F  K  *  F  S  G  Q  Q  G  L  H  R  A  I  K  R  E  L  Q  L  K  A  K  K  T  Y  F  L  Q  I  L  S  N  F  A  I  K  *  K  M  A  A  L  S  M  T  W  S  C  S  P  L  T  S  S  K  F  R  R  V  N  R :   Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  Y  D  G  T  G  K  S   </second_frame>
            <third_frame>   R  T  Y  C  R  G  T  I  S  S  L  S  S  S  V  D  N  K  D  C  T  E  Q  *  K  E  N  F  S  *  K  Q  K  R  L  T  F  C  K  S  L  V  I  L  P  S  N  R  R  W  Q  H  C  L  *  P  G  L  A  L  P  *  P  P  Q  N  F  G  E  S  I   : D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F  T  M  E  Q  E  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88261" stop="88331"/>
                    <exon start="88557" stop="88643"/>
                    <exon start="89367" stop="89477"/>
                    <exon start="89736" stop="89787"/>
                    <exon start="90079" stop="90216"/>
                    <exon start="90716" stop="90814"/>
                    <exon start="91146" stop="91243"/>
                    <exon start="91630" stop="91737"/>
                    <exon start="91846" stop="91927"/>
                    <exon start="92166" stop="92231"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAALSMTWSCSPLTSSKFRRVNRYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88554" e_stop="88643"/>
            <exon e_start="89367" e_stop="89477"/>
            <exon e_start="89736" e_stop="89787"/>
            <exon e_start="90079" e_stop="90216"/>
            <exon e_start="90716" e_stop="90814"/>
            <exon e_start="91146" e_stop="91243"/>
            <exon e_start="91630" e_stop="91737"/>
            <exon e_start="91846" e_stop="91927"/>
            <exon e_start="92166" e_stop="92524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="0.989"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="88554" e_stop="88643" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="88644" i_stop="89366" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89367" e_stop="89477" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="89478" i_stop="89735" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89736" e_stop="89787" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="89788" i_stop="90078" i_length="291"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90079" e_stop="90216" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90217" i_stop="90715" i_length="499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90716" e_stop="90814" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="90815" i_stop="91145" i_length="331"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91146" e_stop="91243" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="91244" i_stop="91629" i_length="386"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91630" e_stop="91737" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91738" i_stop="91845" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91846" e_stop="91927" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91928" i_stop="92165" i_length="238"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92166" e_stop="92524" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88554" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88593" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88617" stop="88643"/>
              <exon start="89367" stop="89477"/>
              <exon start="89736" stop="89787"/>
              <exon start="90079" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90113" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606471" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90216"/>
              <exon start="90716" stop="90814"/>
              <exon start="91146" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91215" stop="91243"/>
              <exon start="91630" stop="91737"/>
              <exon start="91846" stop="91927"/>
              <exon start="92166" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91912" stop="91927"/>
              <exon start="92166" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91915" stop="91927"/>
              <exon start="92166" stop="92417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</gDNA_template>
            <first_frame> Q  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D  L  R  W  N  R  K  K  Y </first_frame>
            <second_frame>  R  Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  Y  D  G  T  G  K  S   </second_frame>
            <third_frame>   D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F  T  M  E  Q  E  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88555" stop="88643"/>
                    <exon start="89367" stop="89477"/>
                    <exon start="89736" stop="89787"/>
                    <exon start="90079" stop="90216"/>
                    <exon start="90716" stop="90814"/>
                    <exon start="91146" stop="91243"/>
                    <exon start="91630" stop="91737"/>
                    <exon start="91846" stop="91927"/>
                    <exon start="92166" stop="92231"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97731" PGL_stop="95256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97712" e_stop="97073"/>
            <exon e_start="96977" e_stop="96875"/>
            <exon e_start="96179" e_stop="95971"/>
            <exon e_start="95809" e_stop="95780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.969"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="97712" e_stop="97073" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97072" i_stop="96978" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96875" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96179" e_stop="95971" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="95809" e_stop="95780" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97712" stop="97161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97710" stop="97106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97708" stop="97239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97419" stop="97073"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="96121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97331" stop="97073"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="95971"/>
              <exon start="95809" stop="95780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97330" stop="97073"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="95972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGT</gDNA_template>
            <first_frame> L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L   : L  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  </first_frame>
            <second_frame>  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C </second_frame>
            <third_frame>   P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97710" stop="97073"/>
                    <exon start="96977" stop="96875"/>
                    <exon start="96179" stop="95971"/>
                    <exon start="95809" stop="95782"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLAYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97713" e_stop="97069"/>
            <exon e_start="96977" e_stop="96875"/>
            <exon e_start="96179" e_stop="96022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97713" e_stop="97069" e_length="645"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97068" i_stop="96978" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96875" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="96179" e_stop="96022" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97713" stop="97069"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="96022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97712" stop="97161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97710" stop="97106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97708" stop="97239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97699" stop="97069"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="96118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</gDNA_template>
            <first_frame> P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A  *  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C </first_frame>
            <second_frame>  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F   </second_frame>
            <third_frame>   S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  V   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97713" stop="97069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97731" e_stop="97283"/>
            <exon e_start="96977" e_stop="96875"/>
            <exon e_start="96179" e_stop="95971"/>
            <exon e_start="95809" e_stop="95256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="97731" e_stop="97283" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97282" i_stop="96978" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96875" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96874" i_stop="96180" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96179" e_stop="95971" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95970" i_stop="95810" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="95809" e_stop="95256" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97731" stop="97283"/>
              <exon start="96977" stop="96875"/>
              <exon start="96179" stop="95971"/>
              <exon start="95809" stop="95740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95775" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTCTTCTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATCTGTATTACAGAAATTTCTCCAAGAATGTACACTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATCTTAAGAGTTGCAAACTAGTCTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTCTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATCTCCGGCCAATGTTTTCTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTT</gDNA_template>
            <first_frame> K  N  K  V  A  N  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L  V  K  N  Q  P  S  C  L  Q  L  Y  L  Y  S  T  A  D  K  V  I  P  I  Q  S  V  E  S  F  I  Q  E  Q  R  K  I  G  R  E  V  H  S  F  N  F  G  S  S  P  H  V  D  H  Y  R  T  F  P  D  K  Y  V  S  V  L  Q  K  F  L  Q  E  C  T  L  I  P  K  G  K  R  R  *  *  I  K  G  V  E  G  D  *  P  F  L  V  V  F  I  E  L  L  *  L  G  Q  C  I  L  R  V  A  N  *  S  C  V  K  C  C  Q  L  L  L  R  Q  *  H  S  A  M  R  R  L  C  C  K  W  T  G  S  S  C  K  L  V  Q  S  R  L  T  S  P  A  N  V  F  *  *  H  E  E  V  F  I  C  V  L  F  N  *  A  C  C  F  V  L  </first_frame>
            <second_frame>  K  T  K  S  Q  I  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  S  R  T  S  L  P  V  F  S  Y  I  F  T  V  Q  L  T  R  S  F  Q  F  S  Q  L  N  L  L  F  K  S  R  G  K  L  G  E  R  F  T  L  S  T  L  A  L  L  L  M  *  I  I  T  E  L  F  Q  T  N  M  Y  L  Y  Y  R  N  F  S  K  N  V  H  S  Y  P  K  G  K  D  V  N  R  S  K  E  L  R  V  I  N  H  S  S  *  S  L  L  N  C  F  N  W  G  N  V  S  *  E  L  Q  T  S  L  V  L  S  A  V  N  C  Y  S  G  S  N  I  L  Q  *  G  G  F  A  A  S  G  L  V  V  V  A  N  W  S  K  V  D  L  H  L  R  P  M  F  S  N  N  M  R  K  S  L  F  V  F  Y  L  I  E  H  V  V  S  S  F </second_frame>
            <third_frame>   K  Q  S  R  K  S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C  Q  E  P  A  F  L  S  S  A  I  S  L  Q  Y  S  *  Q  G  H  S  N  S  V  S  *  I  F  Y  S  R  A  E  E  N  W  E  R  G  S  L  F  Q  L  W  L  F  S  S  C  R  S  L  P  N  F  S  R  Q  I  C  I  C  I  T  E  I  S  P  R  M  Y  T  H  T  Q  R  E  K  T  L  I  D  Q  R  S  *  G  *  L  T  I  P  R  S  L  Y  *  I  A  L  I  G  A  M  Y  L  K  S  C  K  L  V  L  C  *  V  L  S  I  A  T  Q  A  V  T  F  C  N  E  E  A  L  L  Q  V  D  W  *  *  L  Q  I  G  P  K  *  T  Y  I  S  G  Q  C  F  L  I  T  *  G  S  L  Y  L  C  F  I  *  L  S  M  L  F  R  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030A21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97731" stop="97283"/>
                    <exon start="96977" stop="96875"/>
                    <exon start="96179" stop="95971"/>
                    <exon start="95809" stop="95539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKVANPPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRSYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVLVKNQPSCLQLYLYSTADKVIPIQSVESFIQEQRKIGREVHSFNFGSSPHVDHYRTFPDKYVSVLQKFLQECTLIPKGKRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 175 chains have been computed
$ 
$ memory statistics:
$ 248528 bytes spliced alignments in total
$ 118 spliced alignments have been stored
$ 2106 bytes was the average size of a spliced alignment
$ 26264 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1641 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 199 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:16:12
-->
