<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:30:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g61350" ref_strand="+" ref_description="C2_At1g61350">
      <seq>actaatgggggatgctggatttatgcctgagttagtgaagtttcttgattcaaagtcatttgaggttagagaaatggcagctgaaacactatcaagtatggtgattgtaccaagaaaccaaaagagatttggacagaatgatgaaaatgttggtttgctgctgcaaatgcttgatccagaacaggcaaattttggcaacaaaaatctgttgctttctatactcatgtcattaacaagttgcaatagtgccagaaagaaaattgcaaactcagggtatctgataaacattgagaagttagctgaggctgaagtatcagatgcaaaaaagattgtcagaaaattgtcttcaaatagattcagaagcattctcagtggaatctggcattcataatcaatgtaattcaattttgtcttatgcttaaatattttaccaaaaccaaaaaacagaaaggagatcttatgtaatataatccaagataaatgtactttattgttaagaaagagcttttagaacatccccttttgccctttttagcttctagtcatataataaaaaaaaagattactgaatattacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="50100" stop="51300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50399" g_stop="50930" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="C2_At1g61350" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g61350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50399" e_stop="50930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTA-TTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</genome_strand>
        <mrna_strand>ACTAATGGGGGATGCTGGATTTATGCCTGAGTTAGTGAAGTTTCTTGATTCAAAGTCATTTGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATGAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAACAGGCAAATTTTGGCAACAAAAATCTGTTGCTTTCTATACTCATGTCATTAACAAGTTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAGAAGTTAGCTGAGGCTGAAGTATCAGATGCAAAAAAGATTGTCAGAAAATTGTCTTCAAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAAATATTTTACCAAAACCAAAAAACAGAAAGGAGATCTTATGTAATATAATCCAAGATAAATGTACTTTATTGTTAAGAAAGAGCTTTTAGAACATCCCCTTTTGCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g05090" ref_strand="+" ref_description="C2_At4g05090">
      <seq>aagtaaacagatttaacccaggtccatttcgtagtaataagttgtacattccaggaaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtagaattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggaaaaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86993" stop="89362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87293" g_stop="87488" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="301" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="404" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="89060" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="613" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89061" i_stop="89323" i_length="263">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89324" g_stop="89330" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="619" r_length="6" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="C2_At4g05090" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g05090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87293" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="89060"/>
          <exon e_start="89324" e_stop="89330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAAT-AGTTGTACATTCCAGG-AATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTG</genome_strand>
        <mrna_strand>AAGTAAACAGATTTAACCCAGGTCCATTTCGTAGTAATAAGTTGTACATTCCAGGAAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGAATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGAAAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG.......................................................................................................................................................................................................................................................................-ATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0266" ref_strand="+" ref_description="T0266">
      <seq>ttgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="122635" stop="123974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122935" g_stop="122991" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123089" g_stop="123218" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123372" g_stop="123674" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="490" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="T0266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="T0266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122935" e_stop="122991"/>
          <exon e_start="123089" e_stop="123218"/>
          <exon e_start="123372" e_stop="123674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</genome_strand>
        <mrna_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="50399" PGL_stop="50930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50399" e_stop="50930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="50399" e_stop="50930" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50399" stop="50930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g61350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTATTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</gDNA_template>
            <first_frame> A  N  G  G  C  W  I  Y  A  *  V  G  E  V  S  R  F  K  V  I  *  G  *  R  N  G  S  *  N  T  I  K  Y  G  D  C  T  K  K  P  K  E  I  W  T  E  *  S  K  C  W  F  A  A  A  N  A  *  S  R  R  G  K  F  W  Q  Q  K  A  V  A  F  Y  T  H  V  I  N  K  L  Q  *  C  Q  K  E  N  C  K  L  R  V  S  D  K  H  *  K  V  S  *  G  *  S  F  R  C  K  K  D  S  Q  K  I  V  F  Q  *  I  Q  K  H  S  Q  W  N  L  A  F  I  I  N  V  I  Q  F  C  L  M  L  N  Y  L  P  K  P  K  I  R  K  E  I  L  C  N  I  N  Q  D  K  C  I  L  L  L  R  K  N  F  *  N  I  P  F  C  L  F  </first_frame>
            <second_frame>  L  M  G  D  A  G  F  M  P  E  L  V  K  F  L  D  S  K  S  Y  E  V  R  E  M  A  A  E  T  L  S  S  M  V  I  V  P  R  N  Q  K  R  F  G  Q  N  D  Q  N  V  G  L  L  L  Q  M  L  D  P  E  E  A  N  F  G  N  K  K  L  L  L  S  I  L  M  S  L  T  S  C  N  S  A  R  K  K  I  A  N  S  G  Y  L  I  N  I  E  K  L  A  E  A  E  V  S  D  A  K  K  I  V  R  K  L  S  S  N  R  F  R  S  I  L  S  G  I  W  H  S  *  S  M  *  F  N  F  V  L  C  L  T  I  Y  Q  N  Q  K  S  E  R  R  S  Y  V  I  *  T  K  I  N  V  F  Y  C  *  E  R  T  F  R  T  S  P  F  A  F  L </second_frame>
            <third_frame>   *  W  G  M  L  D  L  C  L  S  W  *  S  F  *  I  Q  S  H  M  R  L  E  K  W  Q  L  K  H  Y  Q  V  W  *  L  Y  Q  E  T  K  R  D  L  D  R  M  I  K  M  L  V  C  C  C  K  C  L  I  Q  K  R  Q  I  L  A  T  K  S  C  C  F  L  Y  S  C  H  *  Q  A  A  I  V  P  E  R  K  L  Q  T  Q  G  I  *  *  T  L  K  S  *  L  R  L  K  F  Q  M  Q  K  R  *  S  E  N  C  L  P  I  D  S  E  A  F  S  V  E  S  G  I  H  N  Q  C  N  S  I  L  S  Y  A  *  L  F  T  K  T  K  N  Q  K  G  D  L  M  *  Y  K  P  R  *  M  Y  F  I  V  K  K  E  L  L  E  H  P  L  L  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50400" stop="50789"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGDAGFMPELVKFLDSKSYEVREMAAETLSSMVIVPRNQKRFGQNDQNVGLLLQMLDPEEANFGNKKLLLSILMSLTSCNSARKKIANSGYLINIEKLAEAEVSDAKKIVRKLSSNRFRSILSGIWHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="87293" PGL_stop="89330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87293" e_stop="87488"/>
            <exon e_start="87622" e_stop="87724"/>
            <exon e_start="88430" e_stop="88532"/>
            <exon e_start="88852" e_stop="89060"/>
            <exon e_start="89324" e_stop="89330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="0.908"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="0.951"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="0.990"/>
          <exon-intron don_prob="0.956" acc_prob="0.421" e_score="0.990"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="87293" e_stop="87488" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="87622" e_stop="87724" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="88430" e_stop="88532" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="88852" e_stop="89060" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.421">
            <gDNA_intron_boundary i_start="89061" i_stop="89323" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="89324" e_stop="89330" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="89060"/>
              <exon start="89324" stop="89330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g05090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : AATTGTG</gDNA_template>
            <first_frame> K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   I  V </first_frame>
            <second_frame>  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : E  L   </second_frame>
            <third_frame>   A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87488"/>
                    <exon start="87622" stop="87724"/>
                    <exon start="88430" stop="88532"/>
                    <exon start="88852" stop="89060"/>
                    <exon start="89324" stop="89329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="122935" PGL_stop="123674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122935" e_stop="122991"/>
            <exon e_start="123089" e_stop="123218"/>
            <exon e_start="123372" e_stop="123674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122935" e_stop="122991" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123089" e_stop="123218" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123372" e_stop="123674" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122935" stop="122991"/>
              <exon start="123089" stop="123218"/>
              <exon start="123372" stop="123674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122937" stop="122991"/>
                    <exon start="123089" stop="123218"/>
                    <exon start="123372" stop="123672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 6088 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2029 bytes was the average size of a spliced alignment
$ 8072 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2690 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:30:55
-->
