<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:32:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLET-6-L10" ref_strand="+" ref_description="cLET-6-L10">
      <seq>caggtttttgagaattgaaaaaatgacggcattcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59212" stop="57970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58916" g_stop="58718" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58270" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="516" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="cLET-6-L10" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="cLET-6-L10" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58916" e_stop="58718"/>
          <exon e_start="58586" e_stop="58270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAA</genome_strand>
        <mrna_strand>CAGGTTTTTGAGAATTGAAAAAATGACGGCATTCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cSTC-3-D3" ref_strand="+" ref_description="cSTC-3-D3">
      <seq>atttttgaggattctgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagccatcgacagaggctgccaaggttaaggagcaggctctggcgacgaagaagcctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttggctctgaacgagaaaggtggatcgagtccgtatgcaattgctaaatacatggaagacaaacacaaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggcgggaaagaaggagactacaacaaaaacatcttccaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59211" stop="58053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58924" g_stop="58718" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58353" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="439" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="cSTC-3-D3" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="cSTC-3-D3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58924" e_stop="58718"/>
          <exon e_start="58586" e_stop="58353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAG</genome_strand>
        <mrna_strand>ATTTTTGAG-GATTC-TGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCCATCGACAGAGGCTGCCAAGGTTAAGGAGCAGGCTCTGGCGACGAAGAAGCCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGGCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAATTGCTAAATACATGGAAGACAAACACAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCGGGAAAGAAGGAGACTACAACAAAAACATCTTCCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g66290" ref_strand="+" ref_description="C2_At5g66290">
      <seq>gttcttcctccggcgaaaagattttactcttactactaggagaagtccatccctgtctattcatcgggctttagcacgctagtcgcttctgtaccctttcaatgggtgcatccgaatcagttctctccggctcacaagggccaatcgatgagatcaccacagtttctgagcgtgtagaaggcgttgatcctattttggagaggctaaaatctctcaaaattgctgctccaatactgaaatcgccgccagctgagagtagcttgactgacattctggtgaggaaagcatcctccacttcaaataaaggctgcgtagatccaaaagttctacttgagctcttctctgtatatcgccagtggcaagaggagaaggcccagaagatctgtaaaagacaggaagaaatagaaaacaaaatagaagttgcagatgcattggctgttaagcttcttcaacgcttcaattactctgtttccgcaatgaaaacaacctcacagcatctatcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="66845" stop="73315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67145" g_stop="67281" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67282" i_stop="67373" i_length="92">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67374" g_stop="67457" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="221" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67458" i_stop="67543" i_length="86">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67544" g_stop="67628" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="306" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67629" i_stop="71688" i_length="4060">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71689" g_stop="71777" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="395" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71778" i_stop="72903" i_length="1126">
            <donor d_prob="0.854" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72904" g_stop="73015" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="507" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="C2_At5g66290" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g66290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67145" e_stop="67281"/>
          <exon e_start="67374" e_stop="67457"/>
          <exon e_start="67544" e_stop="67628"/>
          <exon e_start="71689" e_stop="71777"/>
          <exon e_start="72904" e_stop="73015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAAGTAATTCTTCTTCTGCTTCATTTTCTATGAATTTCAGTTTTAATTGTTCGCCTTTTTGTCTTTCATAATTTTGAATTTTCTCATGAATGAAGGGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATTGTAAGTTTCACTTTTCGCTAACTTCGGTGTATTGCTTTTGAATAGCTATTAATCCATTACTTATTGCGTGAAATTTGAATGACAAGGCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAGGTAATTTTTCAATATGATAGCAGTTTCCAATACCTTCTGGAAATGGCGTATGCTGTATTGAACATTTTTGAACTTAGGATTGTGTGTTAACCTTGAAAAAATCTTTTTTAAACTTGTTTCAAGTAATTTATTGTCTAGACATACATAAATATCAATTTAGGTTAACTGGTTTTTTTTGCTCCTTAGGAGGAAACGTTTTGAGGATTCAATTCTAGATCAGACCTTGTTATTTTCATAAGCAATAGGTGCATATAAAACAATTATTATAAAAATTAGAATAGATTCTTCGTCAAGGATTCAAACTTGGGGAAAATGCTGCAGCATACAGGCGCTGAACCAACAAGCCGTGGAGCTACTTGCGTTAAGTAGTGTCACTTATAAAATTCTAAAAGTATTTTAAATTCTTCAGATAATATACATATATATTATTATTAAAAAATTTGACGAAGGGTGTAGGATCTACACCCCTTGTCTTAAGGTGCATCCGCCCCACCCTCCTGGACAGGTTTGTAGGGAATATGAGAGAAAATTAAAGAGATGATATCACTTGCAAGTTTTGAGAATACGCGTGCCTTTTAATATTTGAAACGTGGTGATGCAAGCGGACTGTGGTGCTGTTACTTGGACATAGAAAGTACTTTCGAGTTCTTCAAATGGACAGTGAATCAAGAATATATCAAGCTTTTTCAAAAAAGGAAAAAGGAAGTAGAGAGAGTCAGTAACAGTTCATCCTACAAATTACATTGAGCATAGATCCAAGCTGATGGATTCTTTCAGGCTTGTAACGTCTCTAAGTTTATGCCTTATTGCTTCTTCAAAGTTTCACGGTGTGACTACTAAGTTCAATACCACAACAATCCACATCTTTGAATATATCCTCTATTGGCATATATCGAGTTAAGTTACTCTTTGTTTAATGTAACATTAAGTAACTTGGTTAGACATTTTAACCTTTTACAAACTTGTGTTGGGATACTATTTGGACCACATGCTTCTCTATTCGTTTTATTCTTTATGGCATCCTTTACTTCAGAATACAGAATTTATGTGCTTCAGCTTCTAAGTCTTATGCTTCTGTAGTTTCGTTTCATATCCAGGTCCACAATGTATGTTCAGTATCTTCCTAGAACTTAGTGTCATTTTCTTTGTTTATTAACATAGCAATATCATGTTAATTTTCTCTTTTCCCACACTATCCTAATGAGTTAATAATCATGTCGCCAATTCTCTTCAAGGGTGGTTTGCAAACTTCTTTACCCTCATCGTTCCAGGAAGATGTTGGAGCTCTTTCCTATCTAACTTCACATCTGGGTGCCAATGTATGGGGTGAATACCTTAGTCACGTCATCCGTGATGTGAGAACCCTTGGTTATGCTCTCTCATTCCCTGGATGCAACATGGTGGAACTTCTTGGTTAAATTAAAGTTGCACCCCTGCGTCGATGTAGCATGTTCCAAGAAGACCATGACCAATATAGTTAATATGAGGATTCATTATAAATTTAACTATTTTTTAAATGGCCATCGACTATTGCAATGTTCTCCTTTCTACAGGATTGGATTGATTGTGCTCAGTGAGCATAGGTGGAGTTATGATGAATCCTAATGATAACCATTTCCCTAGAGTTTCAAACCTACACTAATGAACCGTGATTTCTTGTGCAAATATTTAAGAAGTGCTTGAAACTTGAACTAGCCTCCATTCACCATGATAGTTGGTTTGTTTTAATTAAACTGAAGAAAACTAAACCAAAAAATGGGTTGTGGCTCAATTAGGAATTAAAAAGAAACTGAGAACATTGATGATCTGATCCGAGAGATGAAAATGCTAAGCAGCTTAGAGCTCAGTTGGCTGCTGCTTCCGAATCTTTTCTTCTGAGAAACCTGTATTACTTCTCAATTTGACTGCTACAGGGGCCGCTTAACAAAGTTGATGGCCTAAACAAGAATTTTGTAGAAGGCCTTATGGTTTTTTCAGATGTTGTTCATATATATTTTTTAAGTCTATTTTTCTAAAGTTTTTTAGATGCAAAGTTGTTAACATTTCTCCAAATCAGTTTGTTCTAAAAAAAGTTCAAGTGATGATATCGCTAATCAATATTTGACTGTGGATGAATGAGTAACACCTACGACAACAACTGCTAATTCTCGTAGGCTGAGAAGTAAATGAGTAATCCGCTTGGGGAAGGGGGGTCGCGTCTGATTAGCTAGTTGGCGAAGCAATAGCTTACCAAGGCGATGAGCAGCCACACTGAAACTGAGATGCGGGCCCAACCTCCCACGGGAAGTAGCAGTGGGGATCTCTCTATTGACATCTTAGAGTGTCCATTCCTTGCAAGCAACATAAGCCCAAGCCCCTTTTTCGTTCTCTTCAGACAAGCAACTTTTCTTCTTTTGCCCTCTCTTGCCGTAGAGTACCCAATGATTGTTTAAAATAGAACAGAGATAAAGGATCCCAGAACAAGTAAACACCTTTAGTTGTCTTAATAACTGGATCAGATTGAAGAATCTGATTTTAAACGAGGCTAACAAAATAGGAGGGAAAACCACTCAATAAATGAAATTGCTGAAGGATTTTCCTTGAATTTTTTGAAAGTTATCCAACTTGGTTTCTTTCTATATAGTGTAAATAACTAAATATATGACACCTGGGCCTAACTCAACCCCAAAAGCTAGCTCATGAGGGGAGGAGAGGTTTGTTTGTCCAAGTCCATATAAAGAGACTAATTTCTCCTCCATCTATCGATGTGGGACTCTTAACACTCCCCGCACGCCCAGACCTTAACTAGAGCATGAACACTTATAAATGGGGGCCCAACATCGATGAACAACAAATTGAGATAGGTCTGGCGTTGATACCAAATATGACACCTAAGCTTAGCTCAACTCCAAAAGCTAGCTCATGAGGAGAGGTTTGTCCAAGTCCATATAAGGCGACCAATTTCCCATTCCTCTATCGATGTGGGACTTCTTACCTTATAGAATAGAAAACTATTGACACATCTGATGGAAACGAAATCGGTCAATAGTAAGATAGTCACACTACTTCATTTTTTAAAAATAATAAATCAAAAAAAATGAAAGTCAAATACTCTTCTTCACATTCTACATAAAATACACTTTTTCTTCGAGAATGTTTGGAATCCCACTCATAATACTTTCATTTAGTTTCTAGATATGTAAATTTTATTTGAATAAATTGAAGATTCTATATCCAAATTTATATTGAACATTAATTAGTTTGATCCTCATACTCCGAATAAAGCCACATAAATAAAATCACGGGGAGTAAATTTTTTTATTTTTTTTAAATAGCTACAAAACCTACTATATATAAAGAAAAGAAGGGGAGGGGGGGGGGCTTGAGTTGGCGAAGTGACCTAATCATACAAACTGTAGCCTACCAACATCAGATGGCGCACCAGAATCCCGTACTGGAAGTCCTTGAAGGGGACATGGGTAGGAGCTTCAAAGATGGTAAGTGGAGATCTACTAGCTTCCCTCTTAATCTCAAATATAACCAATGAATTACAACTGAAGCTTCACTTGAATCGTAATTGCCCAAAAATGGAGTATTCTTTAGATCCGATCTAGGGCGAAACTTTTGAGATTGTGAATGAGATTATATACATGTATGTTTTGATTGAATTAGCTCCAAGAATAAAATACAGTAAATTTTGGAGATCGTGAATGAGATTAGATATTCATATGTTCTGATCAAACTAGCTCCTTTTTAATGAGTCTAATCCGCCTTTATACAATTCTGAATGACTCAAGTTGTTTGTAGTATGTAAAAGCCACACAACTAATCATTATAATCACACCCACAAGGGTGAGTACGTTTAACTTATCAGAAGAAAAACAGATACCAAAAATGCTTTTAATGAAATAATTTAAAAACATTCATTGCAGCAGTTATAGCATTGACCAGCATTTTCTCTGATCTCTGTTGGGATATATGTAGCATTTGTTAAACAATTGTCATCAAGAATAAGTAGGGGGATTTTTTTCTCTTATCCTGCTGGGTAAAATATTGATACTGCTTTCTTTTGTTATTGTAGGCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAGGTTTGCTCAATCATTAGCATGTTCTTCTGGTCACCTAATGCTTCAGTAGCCATTTTCCAGTGTGGTAGTGGTTCCATCCATAGAAAGTGTGGATCTAGAACAGGCTAAAATGTATGTTTGTATATGTTTGAGTTAGACTGTATGTAATTACACAAACCATTCTATTCTAAATGCATTCACTAGTCTCAAAACATGGTCGCTTGTGAGTCATTTCTTATTAACACACACACCCTCACACACAGAGGGGTGGGAGAAAGGAAATTATGAGTATCCTTTGAGTCAAAGCTGTGGTCTGAATTTGTATGGAATTCTTGCAAGTAAATTAAGGTCAAATTGTTCAGATAACTACTGTTAGCCGTTTTTTGCCAGCAATGAGGTGGATTATCGCCCCAATCCCTCCCAAAGGAAGTAGAACATAGTCATTTTGTTCACCATAGAAGTTGCATACAGGCTCAAAGTTGTTTAGTAGTTATTTGATCCTTATTATGTTTACTATGTAGAAGTGGCTGACTAGATTGATTTGGGTTCTCTAAAACTTGATCCCAATTTAATGTGTAAAGGAGCAGCTGCCTCAAAAAAAAATCTATCTGATGACTAGATATTCCCCAACTTTTCAGGCATATATATTTTCTGAAGTTAGTTGCTAAAATTAAATGCCCTCTAGATCAGTGGTAGACAATATCCTTTTGAATCAACAATTGCACATCAATCATCACCACACTGACCTTTCGAAGGGTGGGAAAAGATTTTACAAGGTTTATTTTTGTGTTTGATTGTAGCTACACCATTATTTCTCCCATCATACGTTGGTCGAGAATTGTCTTGCCACATCCCATAGTATGGCTTGTACTATGCAGATGGTTGTATACCATTTATAAAGTATGCTTCCCTGTGACTAGAGTTTAAAGTTAATAGTCAATTAGGTGGTGGTTTTTTCGACACTAGGATTTTGAAGCTCTGTTCAGTACATTAAGTACTATGTTCAAGGTGTTAGCGTACCTATGCTAGCATGTTGAAGCTCTTCATCATGTTTACAAGCTTGTGTTGTTTGTTGTGGTTTTTCTTCATGTAAAAAGAAGAGCTCATATATCTTTTTAAAAGTAGATTTCTTGGATAATTGCTGCAGGAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAG</genome_strand>
        <mrna_strand>GTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCTGTCTATTCATCGGGCTTTAGCACGCTAGTCGCTTCTGTACCCTTTCAATGGGTGCATCCGAATCAGTTCTCTCCGGCTCACAA............................................................................................GGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGAGAGGCTAAAATCTCTCAAAATT......................................................................................GCTGCTCCAATACTGAAATCGCCGCCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGCCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTATCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="58924" PGL_stop="58270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58924" e_stop="58718"/>
            <exon e_start="58586" e_stop="58270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.970"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="58924" e_stop="58718" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58586" e_stop="58270" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58924" stop="58718"/>
              <exon start="58586" stop="58353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cSTC-3-D3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58916" stop="58718"/>
              <exon start="58586" stop="58270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLET-6-L10" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG : ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAA</gDNA_template>
            <first_frame> V  I  E  I  F  L  R  I  E  K  M  T  A  I  G  E  V  E  N  P  A  V  V  Q  R  P  T  E  A  S  K  V  K  E  Q  A  S  A  T  E  K  A  V  K  E  K  K  P  R  A  P  K  E  K  K  P  K  S  A  K  A  V  T  H  P  P  Y  F  Q  :  M  I  K  E  A  L  L  S  L  N  E  K  G  G  S  S  P  Y  A  V  A  K  Y  M  E  D  K  H  K  D  E  L  P  A  N  F  R  K  I  L  G  L  Q  L  K  N  S  A  A  K  G  K  L  I  K  I  K  A  S  Y  K  L  S  E  A  G  K  K  E  T  T  T  K  T  S  T  K  K  L  P  K  A  D  S  K  K  K  P  R  S  T  R  A  T  S  T  A  A  K  K  T  E  V  P  K   </first_frame>
            <second_frame>  L  L  R  Y  F  *  E  L  R  R  *  R  Q  S  E  K  L  R  T  P  P  L  C  S  D  Q  Q  R  L  P  R  L  R  S  R  L  R  R  Q  R  R  L  L  R  R  R  N  L  G  L  P  K  R  R  S  L  N  L  P  R  L  L  L  I  L  L  I  F  R :   *  L  R  R  L  C  C  L  *  T  R  K  V  D  R  V  R  M  Q  L  L  N  T  W  K  T  N  I  R  M  N  Y  Q  Q  I  S  G  K  F  *  V  F  N  *  R  I  L  Q  Q  R  G  S  *  S  K  S  R  L  H  T  N  Y  L  R  L  E  R  R  R  L  Q  Q  K  R  L  P  K  S  S  P  R  P  I  L  R  R  N  L  E  A  P  G  P  L  Q  L  Q  R  R  K  Q  R  C  R  R  </second_frame>
            <third_frame>   Y  *  D  I  F  E  N  *  E  D  D  G  N  R  R  S  *  E  P  R  R  C  A  A  T  N  R  G  F  Q  G  *  G  A  G  F  G  D  R  E  G  C  *  G  E  E  T  *  G  S  Q  R  E  E  A  *  I  C  Q  G  C  Y  S  S  S  L  F  S   : D  D  *  G  G  S  V  V  S  E  R  E  R  W  I  E  S  V  C  S  C  *  I  H  G  R  Q  T  *  G  *  I  T  S  K  F  Q  E  N  S  R  S  S  I  E  E  F  C  S  K  G  E  A  N  Q  N  Q  G  F  I  Q  T  I  *  G  W  K  E  G  D  Y  N  K  N  V  Y  Q  K  A  P  Q  G  R  F  *  E  E  T  *  K  H  Q  G  H  F  N  C  S  E  E  N  R  G  A  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58924" stop="58718"/>
                    <exon start="58586" stop="58272"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEIFLRIEKMTAIGEVENPAVVQRPTEASKVKEQASATEKAVKEKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLSLNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRATSTAAKKTEVPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="67145" PGL_stop="73015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67145" e_stop="67281"/>
            <exon e_start="67374" e_stop="67457"/>
            <exon e_start="67544" e_stop="67628"/>
            <exon e_start="71689" e_stop="71777"/>
            <exon e_start="72904" e_stop="73015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.990" acc_prob="0.882" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="0.976"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="0.989"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="67145" e_stop="67281" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67282" i_stop="67373" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="67374" e_stop="67457" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.882">
            <gDNA_intron_boundary i_start="67458" i_stop="67543" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="67544" e_stop="67628" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67629" i_stop="71688" i_length="4060"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="71689" e_stop="71777" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71778" i_stop="72903" i_length="1126"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="72904" e_stop="73015" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67145" stop="67281"/>
              <exon start="67374" stop="67457"/>
              <exon start="67544" stop="67628"/>
              <exon start="71689" stop="71777"/>
              <exon start="72904" stop="73015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g66290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAA : GGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATT : GCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAG : GCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAG : GAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAG</gDNA_template>
            <first_frame> V  L  P  P  A  K  R  F  Y  S  Y  Y  *  E  K  S  I  P  V  Y  S  S  G  F  S  T  Q  V  A  S  V  P  V  Q  W  V  L  P  N  Q  F  S  P  A  H  K :   G  Q  S  M  R  S  P  Q  F  L  S  V  *  K  A  L  I  L  F  W  I  G  *  N  L  S  K  L :   L  L  Q  Y  *  N  R  H  Q  L  R  V  A  *  L  T  F  W  *  G  K  H  P  P  L  Q  I  K  :  A  A  *  I  Q  K  F  Y  L  S  S  S  L  Y  I  V  S  G  K  R  R  R  P  R  R  S  V  K  D  R :   K  K  *  K  T  K  *  K  L  Q  M  H  W  L  L  S  F  F  N  A  S  I  T  L  F  P  Q  *  K  Q  P  H  S  I  C  Q  K </first_frame>
            <second_frame>  F  F  L  R  R  K  D  F  T  L  T  T  R  R  S  P  S  Q  S  I  H  R  A  L  A  R  K  S  L  L  Y  P  F  N  G  C  F  R  I  S  S  L  R  L  T   : R  A  N  R  *  D  H  H  S  F  *  A  C  R  R  R  *  S  Y  F  G  *  A  K  I  S  Q  N   : C  F  S  N  T  E  I  A  T  S  *  E  *  L  D  *  H  S  G  E  E  S  I  L  H  F  K  *  R :   L  R  R  S  K  S  S  T  *  A  L  L  C  I  S  S  V  A  R  G  E  G  P  E  D  L  *  K  T   : G  R  N  R  K  Q  N  R  S  C  R  C  I  G  C  *  A  S  S  T  L  Q  L  L  C  F  R  N  E  N  N  L  T  A  S  V  R   </second_frame>
            <third_frame>   S  S  S  G  E  K  I  L  L  L  L  L  G  E  V  H  P  S  L  F  I  G  L  *  H  A  S  R  F  C  T  R  S  M  G  A  S  E  S  V  L  S  G  S  Q  :  G  P  I  D  E  I  T  T  V  S  E  R  V  E  G  V  D  P  I  L  D  R  L  K  S  L  K  I  :  A  S  P  I  L  K  S  P  P  A  E  S  S  L  T  D  I  L  V  R  K  A  S  S  T  S  N  K   : G  C  V  D  P  K  V  L  L  E  L  F  S  V  Y  R  Q  W  Q  E  E  K  A  Q  K  I  C  K  R  Q  :  E  E  I  E  N  K  I  E  V  A  D  A  L  A  V  K  L  L  Q  R  F  N  Y  S  V  S  A  M  K  T  T  S  Q  H  L  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67219" stop="67281"/>
                    <exon start="67374" stop="67457"/>
                    <exon start="67544" stop="67628"/>
                    <exon start="71689" stop="71777"/>
                    <exon start="72904" stop="73014"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HASRFCTRSMGASESVLSGSQGPIDEITTVSERVEGVDPILDRLKSLKIASPILKSPPAESSLTDILVRKASSTSNKGCVDPKVLLELFSVYRQWQEEKAQKICKRQEEIENKIEVADALAVKLLQRFNYSVSAMKTTSQHLSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 6840 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 6864 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:32:40
-->
