<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:25:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729744" ref_strand="+" ref_description="SGN-E729744 [LA21DH06]">
      <seq>ggtagactattatactctccaccggcgacgtacgaatctctttatcggccgtaatcgaccggtattaagggtaagcaagagagtaatttccgttctctgatagtgtgtcttatttgggagttggaatcagtgtaagttttgtggatttttgatggctctgaagtttctgaataaaaagggatggcacacggggagtcttcgaaacattgaaaatgtatggaaagcatagcagaagcatgacgccgaacagaggaagttggaggagctccgcaagcagatccaggaagagcgtgagcgcactgaatttcaccaactccaggaacaacctggcttggttaccaggcaagaaaggctggaatttctttatgattctggattacctgttggaaagggaagttctattgggtttgaatctttgtccaagccggctgaacctgtaacatctgctgtagctgctgctgattccagttcttctgccaaaccgcaagcatcgttgccacgagctctatttgaggacaagatcacaatcttccaatgatgcttggaggaaactccattctgatcccttgcttatgattcttcagctagagcaataatcccttgcgcgtgtgaagaacaaccctgtccagatggccatgattcgtaaatctgttgaatcaatgaaatataaggataacatgcatgatgataaagagaatgatgatcgcatacataaacatcgagacaagatatcaaagcctcatcattcgaagtcaaagcattttgagaattcacctagacaaacctctgatgcagatgaatacttgagtgaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="1803" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1473" g_stop="1426" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="61" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1425" i_stop="804" i_length="622">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="803" g_stop="48" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="818" r_length="757" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E729744" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1473" e_stop="1426"/>
          <exon e_start="803" e_stop="48"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCACCGGCGACGTACGAATCTCTTTATCGGCCGTAATCGACCGGTAAGTTTACTGACCTCCCTTTGCGTCTTTCGGTCTCCTATTATAGATGTCCTCCAGAACCCTAATTCAAATAGACTCCATGTGTTAATTGGCGAAGTTATTTAGGTTTGAATTGTTTCTAATGCTTTGTTTGTATAGAATTCCTTCAATTCGTTTTCTGCAGTTTTTTTTTAAAAAAAAAATTCAACTGATTTTGCGTTCTTATATGCTTTCGATGTTGTAATTGCTTCAAGGGTGGGTTTGTGGATACGGTACTAATCTGCCCTTGAAGTATTACCAATGAACTTTCAGCGGATTTTTAGTACAGAAAGCTAAATCAGAGGCTAAAAGGTGGAGTTTTTTCATTTGGGGTTGTGGAGTTTCAGCACTTTGGGGAATTCATAGATCTAAATATTTGTCAAATCCTTTTAATTATTCAAGTTAACAATTTCGATTTCTGATGTGCTTCAACTAACAACTAAGAATTTAAGACGAATCTCTTATCTATCTATCTCGGAAATCCAAACTATTATTTAGCTTCCAGATTGCCTCTTTAGTTGATTTAGACAAGTTGGTATCGGAATTTGTTTGTACTCAATTTCATTCCTGGCTTACTCTCCCATTTGGTTGCTTTTATTTGTAGGTATTAAGGGTAAGCAAGAGAGTAATTTCCGTTCTCTGATAGTGTGTCTTATTTGGGAGTTGGAATCAGTGTAAGTTTTGTGGATTTTTGATGGCTCTGAAGTTTCTGAATAAGAAGGGATGGCACACGGGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAG-TCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGCCCTTGCGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGAGAAGGATGAACGCAGACATAAACATCGAGACAAGAAATCAAAGCCTCATCATTCGAAGTCAAAGCATTTGAAGAATTCACCTAGACAAACCTCTGATGCAGATGAATACTTGAGTGAAGATGAT</genome_strand>
        <mrna_strand>ACTCTCCACCGGCGACGTACGAATCTCTTTATCGGCCGTAATCGACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAAGGGTAAGCAAGAGAGTAATTTCCGTTCTCTGATAGTGTGTCTTATTTGGGAGTTGGAATCAGTGTAAGTTTTGTGGATTTTTGATGGCTCTGAAGTTTCTGAATAAAAAGGGATGGCACACGGGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCATAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCACTGAATTTCACCAACTCCAGGAACAACCTGGCTTGGTTACCAGGCAAGAAAGGCTGGAATTTCTTTATGATTCTGGATTACCTGTTGGAAAGGGAAGTTCTATTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACATCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGTTGCCACGAGCTCTATTTGAGGACAAGATCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCTTCAGCTAGAGCAATAATCCCTTGCGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAATCAATGAAATATAAGGATAACATGCATGATGATAAAGAGAATGATGATCGCATACATAAACATCGAGACAAGATATCAAAGCCTCATCATTCGAAGTCAAAGCATTTTGAGAATTCACCTAGACAAACCTCTGATGCAGATGAATACTTGAGTGAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291797" ref_strand="+" ref_description="SGN-E291797 [cLET-7-K1]">
      <seq>ctgtagctgctgctgattccagttcttctgccaaaccgcaagcatcggtgccaggagctctatttgaggacaagtcacaatcttccaatgatgcttggaggaaactccattctgatcccttgcttatgattcgtcagcgagagcaagaagcgccttttngggggcccccgtgtgaagaacaaccctgtccaaatggccatgattcgtaaatctgttgaaacaatgaaaaataaggataagatgcatgatgagaaagagaaggatgaacgcagacataaacatctagacaagaaatcaaagcctccccattcgaagtcaaaacatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="718" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="418" g_stop="100" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E291797" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="418" e_stop="100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGC-CC--TT-----G--CGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGAGAAGGATGAACGCAGACATAAACATCGAGACAAGAAATCAAAGCCTCATCATTCGAAGTCAAAGCATTTGAA</genome_strand>
        <mrna_strand>CTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGCGCCTTTTNGGGGGCCCCCGTGTGAAGAACAACCCTGTCCAAATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGAGAAGGATGAACGCAGACATAAACATCTAGACAAGAAATCAAAGCCTCCCCATTCGAAGTCAAAACATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305201" ref_strand="+" ref_description="SGN-E305201 [cLEY-18-P20]">
      <seq>gggagtcttcgaaacattgaaaatgtatggaaagcagagcagaagcatgacgccgaacagaggaagttggaggagctccgcaagcagatccaggaagagcgtgagcgcagtgaatttcgccaactccaggaacaagctggcttggttaccaggcaagagaggctggaatttctttatgattctggattagctgttggaaagggaagttctagtgggtttgaatctttgtccaagccggctgaacctgtaacagctgctgtagctgctgctgattccagttttctgccaaaccgcaagcatcggtgccaggagctctatttgaggacaagtcacaatcttccaatgatgcttggaggaaactccattctgatcccttgcttatgattcgtcagcgagagcaagaagcccttgcgcgtgtgaagaacaaccctgtccagatggccatgattcgtaaatctgttgaaacaatgaaaaataaggataagatgcatgatgagaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="974" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="674" g_stop="172" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E305201" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="674" e_stop="172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGCCCTTGCGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGA</genome_strand>
        <mrna_strand>GGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTT-TTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGCCCTTGCGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319588" ref_strand="+" ref_description="SGN-E319588 [cTOB-15-J2]">
      <seq>tactctccaccggcgccaactctccaccggcgacgtacgaatctctttatcggccgtaatcgaccggtattaagggtaagcaagagagtaatttccgttctctgatagtgtgtcttatttgggagttggaatcagtgtaagttttgtggatttttgatggctctgaagtttctgaataagaagggatggcacacggggagtcttcgaaacattgaaaatgtatggaaagcagagcagaagcatgacgccgaacagaggaagttggaggagctccgcaagcagatccaggaagagcgtgagcgcagtgaatttcgccaactccaggaacaagctggcttggttaccaggcaagagaggctggaatttctttatgattctggattagctgttggaaagggaagttctagtgggtttgaatctttgtccaagccggctgaacctgtaacagctgctgtagctgctgctgattccagttcttctgccaaaccgcaagcatcggtgccaggagctctatttgaggacaagtcacaatcttccaatgatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="1791" stop="23"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1491" g_stop="1426" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1425" i_stop="804" i_length="622">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="803" g_stop="323" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="547" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E319588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1491" e_stop="1426"/>
          <exon e_start="803" e_stop="323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCCACCGGCGCCAACTCTCCACCGGCGACGTACGAATCTCTTTATCGGCCGTAATCGACCGGTAAGTTTACTGACCTCCCTTTGCGTCTTTCGGTCTCCTATTATAGATGTCCTCCAGAACCCTAATTCAAATAGACTCCATGTGTTAATTGGCGAAGTTATTTAGGTTTGAATTGTTTCTAATGCTTTGTTTGTATAGAATTCCTTCAATTCGTTTTCTGCAGTTTTTTTTTAAAAAAAAAATTCAACTGATTTTGCGTTCTTATATGCTTTCGATGTTGTAATTGCTTCAAGGGTGGGTTTGTGGATACGGTACTAATCTGCCCTTGAAGTATTACCAATGAACTTTCAGCGGATTTTTAGTACAGAAAGCTAAATCAGAGGCTAAAAGGTGGAGTTTTTTCATTTGGGGTTGTGGAGTTTCAGCACTTTGGGGAATTCATAGATCTAAATATTTGTCAAATCCTTTTAATTATTCAAGTTAACAATTTCGATTTCTGATGTGCTTCAACTAACAACTAAGAATTTAAGACGAATCTCTTATCTATCTATCTCGGAAATCCAAACTATTATTTAGCTTCCAGATTGCCTCTTTAGTTGATTTAGACAAGTTGGTATCGGAATTTGTTTGTACTCAATTTCATTCCTGGCTTACTCTCCCATTTGGTTGCTTTTATTTGTAGGTATTAAGGGTAAGCAAGAGAGTAATTTCCGTTCTCTGATAGTGTGTCTTATTTGGGAGTTGGAATCAGTGTAAGTTTTGTGGATTTTTGATGGCTCTGAAGTTTCTGAATAAGAAGGGATGGCACACGGGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTT</genome_strand>
        <mrna_strand>TACTCTCCACCGGCGCCAACTCTCCACCGGCGACGTACGAATCTCTTTATCGGCCGTAATCGACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAAGGGTAAGCAAGAGAGTAATTTCCGTTCTCTGATAGTGTGTCTTATTTGGGAGTTGGAATCAGTGTAAGTTTTGTGGATTTTTGATGGCTCTGAAGTTTCTGAATAAGAAGGGATGGCACACGGGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379649" ref_strand="+" ref_description="SGN-E379649 [TUS-1-O10](-)">
      <seq>cgagctgaaaaactgttggtgggcatggcacctcaggtgggtctatgagattttggaattaaaattccaattcatggtgtttcttctgactttgcactgtgtccttgttatactagtctgtggaacttgataaaattgccatttaccagaagtttcattgcataaactttgcaacattcactaaagttaaccctaacactgtacatggagttgtatgtttttggttaaagcaggaacttaaatctgatccacaagcagccaagatctgtcacacttgttgcgcttgtcaaaggtctcctagaggcatggaaatctaaacctctccaggtagaaccaaggtatagcagaagtcaaaaaatttcagaaaaatcttcatttacttgaggacattctagaggaagatgatcatcttatggattccgataaacagacggaaaattatggttctggcctgctatctttttgtccagtctcctctgctaccagatgctttgctcgggaccaggtttgaagatgggattgaattttctactaaacaggaaacatggaacattatcttaagaggattgcttgttcccaaatcctgcaaagtttgatctaaattgttatcttcttttcagagggagagccagtatatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="5795" stop="3762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5495" g_stop="5214" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5213" i_stop="4420" i_length="794">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4419" g_stop="4062" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="641" r_length="359" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E379649" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5495" e_stop="5214"/>
          <exon e_start="4419" e_stop="4062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTGAAAAACTGTTGGTTGGCATGGCACCTCAGGTGGGTCTATGAGATTTTGGAATTAAAATTCCAATTCATGGTGTTTCTTCTGACTTTGCACTGTGTCCTTGTTATACTAGTCTGTGGAACTTGATAAAATTGCCATTTACCAGAAGTTTCATTGCATAAACTTTGCAACATTCACTAAAGTTAACCCTAACACTGTACATGGAGTTGTATGTTTTTGGTTAAAGCAGGAACTTAAATCTGATCCACAAGCAGCCAAGATCTGTCACACTTGTTGCGGTAACATTCTCCAATACTTGTCTCTGTCATGTTATATATTCAAAAATTTAAGTACATGTATACTGTTTGCAAATCAGTCTAAGAAGGGAAAGGTTTTGTTGTACTGATTCTAATTGTTAATACAAGATTAGTTGGTTGGTTACCTACATTCTTAAACCTTTTACTACACTTCATAGCTTATTCTCTTCAATATTCATATTTGTCCCTCTGAAGGATATATGCCTGTCTAAATGTGGAAAACAAAGCATGACAATCACTTCTTCCATTCTGAGGTATTATCAATAACAGTTTAGATCAATTCTGTGCTCCATCGTGTTGAAAGCCAGAAGCATTTTTGAGGTTTCATGAATTTCAAGTGTCATTTGTGTGTATTGTCTCTTGAGATCCATTTTATGTTCTAATTGGGTTGATTAAAGTAACTTATAAGGGAAGAGCTTTTTTGTTCTTAATACCATCAGTAACAAGCCAATGCTAGAGGTTCTCTCTTTTTGAACTGTAAGACCTTGAAGCTTTAATAGCTTCCAACTTAATTTGGAAAATTATTTATGCCCATCATTCATGTTATATGAAATACTCCACTAGCTAACAAGATTCTCTTGCACGTGTTTCATAAGAAAATAATTGTACAGGTTCCTTGTATTTTGTGCATTAATCTAACAGTGTTATGGATTTGTTTCAACAGTTTAGTCCATCGATGCTAACTAGCTTTCATATTTTACTCCTTCATTTAACTCTAGCATTTCTCATGGAATCCTTGCTCATGTGTCTCTGAATAATGTATTTGCAACCGACAGCTTGTCAAAGGTCTCCTAGAGGCATGGAAATCTAAACCTCTCCAGGTAGAACCAAGGTATAGCAGAAGTCAAAAAATTTCAGAAAAATCTTCATTTACTTGAGGACATTCTAGAGGAAGATGATCATCTTATGGATTCCGATAAACAGACGGAAAATTATGGTTCTGGCCTGCTATCTTTTTGTCCAGTCTCCTCTGCTACCAGATGCTTTGCTCGGGACCAGGTTTGAAGATGGGATTGAATTTTCTACTAAACAGGAAACATGGAACATTATCTTAAGAGGATTGCTTGTTCCCAAATCCTGCAAAGTTTGATCTAAATTGTTATCTTCTTTTCAGAGAG-GAGCCAGTATATCCAT</genome_strand>
        <mrna_strand>CGAGCTGAAAAACTGTTGGTGGGCATGGCACCTCAGGTGGGTCTATGAGATTTTGGAATTAAAATTCCAATTCATGGTGTTTCTTCTGACTTTGCACTGTGTCCTTGTTATACTAGTCTGTGGAACTTGATAAAATTGCCATTTACCAGAAGTTTCATTGCATAAACTTTGCAACATTCACTAAAGTTAACCCTAACACTGTACATGGAGTTGTATGTTTTTGGTTAAAGCAGGAACTTAAATCTGATCCACAAGCAGCCAAGATCTGTCACACTTGTTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAAGGTCTCCTAGAGGCATGGAAATCTAAACCTCTCCAGGTAGAACCAAGGTATAGCAGAAGTCAAAAAATTTCAGAAAAATCTTCATTTACTTGAGGACATTCTAGAGGAAGATGATCATCTTATGGATTCCGATAAACAGACGGAAAATTATGGTTCTGGCCTGCTATCTTTTTGTCCAGTCTCCTCTGCTACCAGATGCTTTGCTCGGGACCAGGTTTGAAGATGGGATTGAATTTTCTACTAAACAGGAAACATGGAACATTATCTTAAGAGGATTGCTTGTTCCCAAATCCTGCAAAGTTTGATCTAAATTGTTATCTTCTTTTCAGAGGGAGAGCCAGTATATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379912" ref_strand="+" ref_description="SGN-E379912 [TUS-1-O10]">
      <seq>gatttttggagaagttccattttttggtctttcttctctgtctcataggcaaactgatgtttgtagccatgctgggtttcaaagcttttgagctaatcgtgtttgggtgtcgcgaagttcaaatttttttgttgtaattctttcctttggtgaaactacacaaccatttactttgcttgttcttattactatctcttgtacgactcaaaaaaaccaatttagcatgttctctcttgagcagaaaaactgttgctcggtatgacacttcaggtgggtatatgagatttaggagaaagttccatttcgtggtgcatcttctctgtctcgttaggcaggctaactgatgcttgcagccataaaagatttcaaagcttttgagttgattcatgttctggcttggcaaagttcagtttcctttcacccctccccaaaccaccctattcgtgaaattatacatgatcttcctcttttcttactcttatttttctctctgctttgttttattaaccatgaggatgttgaggttgtcttctatggaagttcaataaaactcgttttctctcgagctgaaaaactgttggttggcatggcacctcangtgggtctatgagattttggattaaaattccattcatggtgtttcttctgactttgcactgtgtcccttgtatactagtctgtggaacttgataaaattgccatttaccagaagtttcattgcataaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="6357" stop="5027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6057" g_stop="5327" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E379912" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6057" e_stop="5327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGGAGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGCAAAGTTCAGTTTCCTTTCACCCCTCCCCAAACCACCCTATTCGTGAAATTATACATGATCTTCCTCTTTTCTTACTCTTATTTTTCTCTCTGCTTTGTTTTATTAACCATGAGGATGTTGAGGTTGTCTTCTATGGAAGTTCAATAAAACTCGTTTTCTCTCGAGCTGAAAAACTGTTGGTTGGCATGGCACCTCAGGTGGGTCTATGAGATTTTGGAATTAAAATTCCAATTCATGGTGTTTCTTCTGACTTTGCACTGTGTCCTTGTTATACTAGTCTGTGGAACTTGATAAAATTGCCATTTACCAGAAGTTTCATTGCATAAACTT</genome_strand>
        <mrna_strand>GATTTTTGGAGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGCAAAGTTCAGTTTCCTTTCACCCCTCCCCAAACCACCCTATTCGTGAAATTATACATGATCTTCCTCTTTTCTTACTCTTATTTTTCTCTCTGCTTTGTTTTATTAACCATGAGGATGTTGAGGTTGTCTTCTATGGAAGTTCAATAAAACTCGTTTTCTCTCGAGCTGAAAAACTGTTGGTTGGCATGGCACCTCANGTGGGTCTATGAGATTTTGG-ATTAAAATTCC-ATTCATGGTGTTTCTTCTGACTTTGCACTGTGTCCCTTGTATACTAGTCTGTGGAACTTGATAAAATTGCCATTTACCAGAAGTTTCATTGCATAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379322" ref_strand="+" ref_description="SGN-E379322 [TUS-1-P9]">
      <seq>agaagttccattttttggtctttcttctctgtctcataggcaaactgatgtttgtagccatgctgggtttcaaagcttttgagctaatcgtgtttgggtgtcgcgaagttcaaatttttttgttgtaattctttcctttggtgaaactacacaaccatttactttgcttgttcttattactatctcttgtacgactcaaaaaaaccaatttagcatgttctctcttgagcagaaaaactgttgctcggtatgacacttcaggtgggtatatgagatttaggagaaagttccatttcgtggtgcatcttctctgtctcgttaggcaggctaactgatgcttgcagccataaaagatttcaaagcttttgagttgattcatgttctggcttggcaaagttcagtttcctttcacccctccccaaaccaccctattcgtgaaattatacatgatcttcctcttttcttactcttatttttctctctgctttgttttattaaccatgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="6348" stop="5243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6048" g_stop="5543" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E379322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6048" e_stop="5543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGCAAAGTTCAGTTTCCTTTCACCCCTCCCCAAACCACCCTATTCGTGAAATTATACATGATCTTCCTCTTTTCTTACTCTTATTTTTCTCTCTGCTTTGTTTTATTAACCATGAGG</genome_strand>
        <mrna_strand>AGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGCAAAGTTCAGTTTCCTTTCACCCCTCCCCAAACCACCCTATTCGTGAAATTATACATGATCTTCCTCTTTTCTTACTCTTATTTTTCTCTCTGCTTTGTTTTATTAACCATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200591" ref_strand="+" ref_description="SGN-E200591 [cLEC-9-C19]">
      <seq>gatttttggagaagttccattttttggtctttcttctctgtctcataggcaaactgatgtttgtagccatgctgggtttcaaagcttttgagctaatcgtgtttgggtgtcgcgaagttcaaatttttttgttgtaattctttcctttggtgaaactacacaaccatttactttgcttgttcttattactatctcttgtacgactcaaaaaaaccaatttagcatgttctctcttgagcagaaaaactgttgctcggtatgacacttcaggtgggtatatgagatttaggagaaagttccatttcgtggtgcatcttctctgtctcgttaggcaggctaactgatgcttgcagccataaaagatttcaaagcttttgagttgattcatgttctggcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="6357" stop="5357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6057" g_stop="5657" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E200591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6057" e_stop="5657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGGAGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGC</genome_strand>
        <mrna_strand>GATTTTTGGAGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544739" ref_strand="+" ref_description="SGN-E544739 [TUS-67-D16](-)">
      <seq>aacaagtgattctatgaattcccctcttcccatgttttttgccattccagggaatgacacatcgggtaaaatgggcaggtgttttgggactcaaaagccccttttcttagtatattaaaaatagttgtccttattttgtaattttataaatttgcttagacataatttctgttaagtctatttgatgatctatagcaggttttttctgtagttgatcaagttgatacactctccttctcaagtagcatggagggcccattttcatcattcaagcctgagtttttgtccaacagtttgttcaattcatatatttaaatgatttctcttgagatttattttatgcatgtttgagttatcccaccccggagtttctatttttttattttttttactttcaaatgtttggtgttaatttaattttattgggcaggatcttaaatgcagagatattcttgggtggtcaaataattaagttgagcagggtggtcatcatataaactctactgtatattatgaatattttttttttgggttaatttaagattagtaatggtatgaaacaattaaagttatggagattttagtctctcatttatttgaacccttaactttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="17103" stop="15889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16803" g_stop="16190" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="649"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E544739" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16803" e_stop="16190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTGATTCTATGAATTCCCCTCTTCCCATGTTTTTTGCCATTCCATGGAATGACACATCGGGTAAAATGGGCAGGTGTTTTGGGACTCAAAAGCCCCTTTTCTTAGTATATTATATATAGTTGTCCTTATTTTGTAATTTTATTAATTTGCTTAGACATAATTTCTGTTAAGTCTATTTGATGATCTATAGCAGGTTTCTTCTGTAGTTGATCAAGTTGATACACTCTCCTTCTCAAGTAGCATGGAGGGACCATTTTCATCATTCAAGCCTGAGCTCTTGTCCAACAGTTTGTTCAATTCATATATTTAAATGATTTCTCTTGAGATTTATTTTATGCATGTTTGAGTTATACCACCCCTGAGTTTCTATTTTTTTATTTTTTTTACTTTCTAATGTTTGGTGTTAATTTAATTTTATTGTGCAGGATCTTAAATGCAGAGATATTCTTGGGTGGTCAAATAATTAAGTTGAGCAGGGTGGTCATCATATAAACTCTACTGTATATTATGAATATTTTTTTTTTGGGTTAATTTAAGATTAGTAATGGTATGAAACAATTAAAGTTATGGAGATTTTAGTCTCTCATTTATTTGAAGCCTTAACTTTCC</genome_strand>
        <mrna_strand>AACAAGTGATTCTATGAATTCCCCTCTTCCCATGTTTTTTGCCATTCCAGGGAATGACACATCGGGTAAAATGGGCAGGTGTTTTGGGACTCAAAAGCCCCTTTTCTTAGTATATTAAAAATAGTTGTCCTTATTTTGTAATTTTATAAATTTGCTTAGACATAATTTCTGTTAAGTCTATTTGATGATCTATAGCAGGTTTTTTCTGTAGTTGATCAAGTTGATACACTCTCCTTCTCAAGTAGCATGGAGGGCCCATTTTCATCATTCAAGCCTGAGTTTTTGTCCAACAGTTTGTTCAATTCATATATTTAAATGATTTCTCTTGAGATTTATTTTATGCATGTTTGAGTTATCCCACCCCGGAGTTTCTATTTTTTTATTTTTTTTACTTTCAAATGTTTGGTGTTAATTTAATTTTATTGGGCAGGATCTTAAATGCAGAGATATTCTTGGGTGGTCAAATAATTAAGTTGAGCAGGGTGGTCATCATATAAACTCTACTGTATATTATGAATATTTTTTTTTTGGGTTAATTTAAGATTAGTAATGGTATGAAACAATTAAAGTTATGGAGATTTTAGTCTCTCATTTATTTGAACCCTTAACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546513" ref_strand="+" ref_description="SGN-E546513 [TUS-69-O17](-)">
      <seq>tagttagtgaaagatagaattacttatgcatcagatggtgcatgcattttcaatgttatgccatcgtgtagttttatcaccttcttttctcgttagttactttaggaaaacctaaataagaattcacttgtgaagtatcctcttcatctattgttatcccattccctgctcctcttttcagattatacctgtgaattatgagatcaggtaaaagaggtgcaaccccagagatgcaaagcgacacttgaacttccttcccggcagccaaagaaactgactggaaagtgcactgtctgaagagagattcgatcttcacagaatattctgtgggaagtgcttctgattacgcaagctcctccagattcattccaagctgctatatgacagctctaaaggagagaagtttgcagactgttgctcccttatctacgctgccacctgatggatttactaatggaagtgacaaagggagctgaggcctctcataagttgtcaacatggaacttgaatgtggtcctggaacgagatattggcgacatgaatggcctccctctatagaaacaagcgattctatgaattcccctcttcccacgtttttttgccattccatggaatgacacatcgggtgaaatgggcaggtgttttgggactcaaaagccccttttcttagtatattatatatagttgtccttattttgtaatttttttaatttgcttagacataatttctgatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="17661" stop="16331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17361" g_stop="16616" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E546513" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17361" e_stop="16616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTGAAAGATAGAATTACTTATGCATCAGATGGTGCAATGCA-TTTCAATGTTATGCCATCGTGTAGTTTTATCACCTTCTTTTCTCGTTAGTTACTTCAGGAAAACCTAAATAAGAATTTACTTGTGAAGTATCCTCTTCATCTATTGTTATCGCATTCCCTGACCCTCTTTTCAGATTATACCTGTGAATTATGAGATCAGGTAAAAGAGGTGCAACCCCAGAGATACAAAGCGACACTTGAACTTCCTTCCCGGCAGCCAAAGAAACTGACTGGAAAGTGCACTGTCTGAAGAGAGATTCGATCTTAACAGAATATTCTGTGGGAAGTGCTTCTGATTACGCAAGCTCCTCCAGATTCATCCCAAGCTGCTATATGACAGCTCTAAAGGTGAGAAGTTTGCAGACCGTTGCTCCCTTGTCTACGCTGCCACCTGATGGA-TCACTAATTGAAGTGACAAAGGGAGCTGAGGCCTCTCATTAATTGTCAACATGGAACTTGAATGTGGTCCTGGAACGAGATATTGGCGACATGAATGGCCTCCCTCTATAGAAACAAGTGATTCTATGAATTCCCCTCTTCCCATG-TTTTTTGCCATTCCATGGAATGACACATCGGGTAAAATGGGCAGGTGTTTTGGGACTCAAAAGCCCCTTTTCTTAGTATATTATATATAGTTGTCCTTATTTTGTAATTTTATTAATTTGCTTAGACATAATTTCTGTTAAGTCTATTTGATGA</genome_strand>
        <mrna_strand>TAGTTAGTGAAAGATAGAATTACTTATGCATCAGATGGTGC-ATGCATTTTCAATGTTATGCCATCGTGTAGTTTTATCACCTTCTTTTCTCGTTAGTTACTTTAGGAAAACCTAAATAAGAATTCACTTGTGAAGTATCCTCTTCATCTATTGTTATCCCATTCCCTGCTCCTCTTTTCAGATTATACCTGTGAATTATGAGATCAGGTAAAAGAGGTGCAACCCCAGAGATGCAAAGCGACACTTGAACTTCCTTCCCGGCAGCCAAAGAAACTGACTGGAAAGTGCACTGTCTGAAGAGAGATTCGATCTTCACAGAATATTCTGTGGGAAGTGCTTCTGATTACGCAAGCTCCTCCAGATTCATTCCAAGCTGCTATATGACAGCTCTAAAGGAGAGAAGTTTGCAGACTGTTGCTCCCTTATCTACGCTGCCACCTGATGGATTTACTAATGGAAGTGACAAAGGGAGCTGAGGCCTCTCATAAGTTGTCAACATGGAACTTGAATGTGGTCCTGGAACGAGATATTGGCGACATGAATGGCCTCCCTCTATAGAAACAAGCGATTCTATGAATTCCCCTCTTCCCACGTTTTTTTGCCATTCCATGGAATGACACATCGGGTGAAATGGGCAGGTGTTTTGGGACTCAAAAGCCCCTTTTCTTAGTATATTATATATAGTTGTCCTTATTTTGTAATTTTTTTAATTTGCTTAGACATAATTTCTGATTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544740" ref_strand="+" ref_description="SGN-E544740 [TUS-67-D16]">
      <seq>cttacccaatcatttctatttccctttaaatggattttgcagttctcaaaattttcgtcaatttttcatatatctagatattcgttacatcaaactttttggagccttgcttatctttaggagatggtgacatccagcttcatattgagtttttgattttttaccaagtagtatttttaaaaaattatatggttgtttgttgcttctctatgatttcttgaaactccaaatagaaatttattgcatacatcggtaattcttgttaataagtttgtgttgtttttgtcactgcaccactagaagaatatttgtcgtgggatgtatatttatcctataggtatcaattttgggttgtactagccccaaggctttggtcagtgatgaggactcaaaatgggattgtacagggaacatgtcccaagtttgaaccctatcattgacaatgagcttgatatttaagtgggatcaaggcagagaggttgcttataatctcagcagtctcaaatttgtaggtcaattttttttttttttgagaaggatttgtaggtcaatgtaagccatctatttaacgagacaattatgttattcagaaaaaaagaagaagttgagctttaatatgacagagacaagtattagataagtaatatgaatgttgaagagaagcttatggcaactagttgattcttaatgttacttgtaggactggggccatctttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="18589" stop="17272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18289" g_stop="17572" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E544740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18289" e_stop="17572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCAAAATTTTCGTCAATTTTTCATATATCTAGATATTCGTTACATCAAACTTTTTGGAGCCTTGCTTATCTTTAGGAGATGGTGACATCCAGCTTCATATTGAGTTTTTGATTTTTTACCAAGTAGTATTTTTAAAAAATTATATGGTTGTTTGTTGCTTCTCTATGATTTCTTGAAACTCCAAATAGAAATTTATTGCATACATCGGTAATTCTTGTTAATAAGTTTGTGTTGTTTTTGTCACTGCACCACTAGAAGAATATTTGTCGTGGGATGTATATTTATCCTATAGGTATCAATTTTGGGTTGTACTAGCCCCAAGGCTTTGGTCAGTGATGAGGACTCAAAATGGGATTGTACAGGGAACATGTCCCAAGTTTGAACCCTATCATTGACAATGAGCTTGATATTTAAGTGGGATCAAGGCAGAGAGGTTGCTTATAATCTCAGCAGTCTCAAATTTGTAGGTCAA--TTTTTTTTTTTTGAGAAGGATTTGTAGGTCAATGTAAGCCATCTATTTAACGAGACAATTATGTTATTCAGAAAAAAAGAAGAAGTTGAGCTTTAATATGACAGAGACAAGTATTAGATAAGTAATATGAATGTTGAAGAGAAGCTTATGGCAACTAGTTGATTCTTAATGTTACTTGTAGGACTGGGGCCATCTTTCTCT</genome_strand>
        <mrna_strand>CTTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCAAAATTTTCGTCAATTTTTCATATATCTAGATATTCGTTACATCAAACTTTTTGGAGCCTTGCTTATCTTTAGGAGATGGTGACATCCAGCTTCATATTGAGTTTTTGATTTTTTACCAAGTAGTATTTTTAAAAAATTATATGGTTGTTTGTTGCTTCTCTATGATTTCTTGAAACTCCAAATAGAAATTTATTGCATACATCGGTAATTCTTGTTAATAAGTTTGTGTTGTTTTTGTCACTGCACCACTAGAAGAATATTTGTCGTGGGATGTATATTTATCCTATAGGTATCAATTTTGGGTTGTACTAGCCCCAAGGCTTTGGTCAGTGATGAGGACTCAAAATGGGATTGTACAGGGAACATGTCCCAAGTTTGAACCCTATCATTGACAATGAGCTTGATATTTAAGTGGGATCAAGGCAGAGAGGTTGCTTATAATCTCAGCAGTCTCAAATTTGTAGGTCAATTTTTTTTTTTTTTGAGAAGGATTTGTAGGTCAATGTAAGCCATCTATTTAACGAGACAATTATGTTATTCAGAAAAAAAGAAGAAGTTGAGCTTTAATATGACAGAGACAAGTATTAGATAAGTAATATGAATGTTGAAGAGAAGCTTATGGCAACTAGTTGATTCTTAATGTTACTTGTAGGACTGGGGCCATCTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306672" ref_strand="+" ref_description="SGN-E306672 [cLEY-19-E7]">
      <seq>ttacccaatcatttctatttccctttaaatggattttgcagttctcaaaattttcgtcaatttttcatatatctagatattcgttacatcaaactttttggagccttgcttatctttaggagatggtgacatccagcttcatattgagtttttgattttttaccaagtagtatttttaaaaaattatatggttgtttgttgcttctctatgatttcttgaaactccaaatagaaatttattgcatacatcggtaattcttgttaataagtttgtgttgtttttgtcactgcaccactagaagaatatttgtcgtgggatgtatatttatcctataggtatcaattttgggttgtactagccccaaagctttggtcagtgatgaggactcaaaatgggattgtacagggaacatgtcccaagtttgaaccctatcattgacaatgagcttgatatttaagtgggatcaaggcagagaggttgcttataatctcagcagtctcaaatttgtaggtcaattttttttttttttgagaaggatttgtaggtcaatgtaagccatctatttaacgagacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="18588" stop="17414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18288" g_stop="17714" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E306672" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18288" e_stop="17714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCAAAATTTTCGTCAATTTTTCATATATCTAGATATTCGTTACATCAAACTTTTTGGAGCCTTGCTTATCTTTAGGAGATGGTGACATCCAGCTTCATATTGAGTTTTTGATTTTTTACCAAGTAGTATTTTTAAAAAATTATATGGTTGTTTGTTGCTTCTCTATGATTTCTTGAAACTCCAAATAGAAATTTATTGCATACATCGGTAATTCTTGTTAATAAGTTTGTGTTGTTTTTGTCACTGCACCACTAGAAGAATATTTGTCGTGGGATGTATATTTATCCTATAGGTATCAATTTTGGGTTGTACTAGCCCCAAGGCTTTGGTCAGTGATGAGGACTCAAAATGGGATTGTACAGGGAACATGTCCCAAGTTTGAACCCTATCATTGACAATGAGCTTGATATTTAAGTGGGATCAAGGCAGAGAGGTTGCTTATAATCTCAGCAGTCTCAAATTTGTAGGTCAA--TTTTTTTTTTTTGAGAAGGATTTGTAGGTCAATGTAAGCCATCTATTTAACGAGACAAT</genome_strand>
        <mrna_strand>TTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCAAAATTTTCGTCAATTTTTCATATATCTAGATATTCGTTACATCAAACTTTTTGGAGCCTTGCTTATCTTTAGGAGATGGTGACATCCAGCTTCATATTGAGTTTTTGATTTTTTACCAAGTAGTATTTTTAAAAAATTATATGGTTGTTTGTTGCTTCTCTATGATTTCTTGAAACTCCAAATAGAAATTTATTGCATACATCGGTAATTCTTGTTAATAAGTTTGTGTTGTTTTTGTCACTGCACCACTAGAAGAATATTTGTCGTGGGATGTATATTTATCCTATAGGTATCAATTTTGGGTTGTACTAGCCCCAAAGCTTTGGTCAGTGATGAGGACTCAAAATGGGATTGTACAGGGAACATGTCCCAAGTTTGAACCCTATCATTGACAATGAGCTTGATATTTAAGTGGGATCAAGGCAGAGAGGTTGCTTATAATCTCAGCAGTCTCAAATTTGTAGGTCAATTTTTTTTTTTTTTGAGAAGGATTTGTAGGTCAATGTAAGCCATCTATTTAACGAGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546555" ref_strand="+" ref_description="SGN-E546555 [TUS-69-P17]">
      <seq>gtttttgtttcttgaccttcttagtgcagatctcaatgtaagatttgtttccagaggacctatacatgtattacgtaatatcataacaatgagttttgacagtgcttctgacattgtgcagcgaagtagatctatatccactgtttttgttaaacctaaaccctcaaatatctttatatgatttgactttggaaccttcaatgacctctgtggaatttaaggtgagattttttatggcatttattatttagttgttttggggttgggaacgagtgagtttttgagaattggttggattgttttctgtcaatttttttttttgaaaacgcctattcattttttgaaactttaatgtgggttaaataaataggtgaaaactggctaaatatcattatttattactaatcgtatagaattttaaagtattaaaaaggatccccttacaagcaaggcccttgcatcacagctgttcctgaagaacaaaataatctcccatttgttatgggagaacattgccaaaccatgtttctggcttcttttggttgctgaaacatacaggctaatgttaaaagggacatgtcatacatatttgtttctcgatttgagtgttgtattttttattataacgtttttgcggtttctaagactgacgttttgtccggtttgaacttagtctcctggtttttgcttaccaatcatttctatttccctttaaatggattttgcaattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="19287" stop="17941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18987" g_stop="18242" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E546555" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18987" e_stop="18242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGTTTCTTGACCTTTGTGGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTATTAGTACTTAATATCATAATAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGATCTCAGATATATCCACTGTTATTGTTAAACCTAAACCGTCAAATATCTTTATATGATTTGACTTTTGGAGCCTTCAATGACCTCCACTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTGTTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTATTGAGAATTGGTTTGGATTGTTTTCTGTCAA-TTTTTTTTTTAAAAACGCCTATTCATTTTTT-AAACTTTAATGTGAGTTAAATAAATAGGTGAAAACTGGCTAAACATCATTAATTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGACCCCCTAACAAGCAAGGCCCTTGCATCACAGCTGTTCCTGAAGAACAAAATAATCTCCCATTTGTTATGGGAGAACATTGCCAAACCATGTTTCTGGCTTCTTTTGGTTGCTGAAACATACAGGCTAATGTTAAAAGGGACATGTCATACATATTTGTTTCTCGATTTGAGTGCTGTATTTTTTATTATAATGTTTTTGCGGTTTCTAAGACTGACGTTTTGTCCTGTTTGAACTTAGTCTCCTGGTTTTTGCTTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCA</genome_strand>
        <mrna_strand>GTTTTTGTTTCTTGACCTTCTTAGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTA-T--TACGTAATATCATAACAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGA--TC---TATATCCACTGTTTTTGTTAAACCTAAACCCTCAAATATCTTTATATGATTTGAC-TTTGGAACCTTCAATGACCT---CTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTATTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTTTTGAGAATTGG-TTGGATTGTTTTCTGTCAATTTTTTTTTTTGAAAACGCCTATTCATTTTTTGAAACTTTAATGTGGGTTAAATAAATAGGTGAAAACTGGCTAAATATCATTATTTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGATCCCCTTACAAGCAAGGCCCTTGCATCACAGCTGTTCCTGAAGAACAAAATAATCTCCCATTTGTTATGGGAGAACATTGCCAAACCATGTTTCTGGCTTCTTTTGGTTGCTGAAACATACAGGCTAATGTTAAAAGGGACATGTCATACATATTTGTTTCTCGATTTGAGTGTTGTATTTTTTATTATAACGTTTTTGCGGTTTCTAAGACTGACGTTTTGTCCGGTTTGAACTTAGTCTCCTGGTTTTTGCTTA-CCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359400" ref_strand="+" ref_description="SGN-E359400 [cLHT-31-I23]">
      <seq>tttttgtttcttgaccttcttagtgcagatctcaatgtaagatttgtttccagaggacctatacatgtattacgtaatatcataacaatgagttttgacagtgcttctgacattgtgcagcgaagtagatctatatccactgtttttgttaaacctaaaccctcaaatatctttatatgatttgactttggaaccttcaatgacctctgtggaatttaaggtgagattttttatggcatttattatttagttgttttggggttgggaacgagtgagtttttgagaattggttggattgttttctgtcaatttttttttttgaaaacgcctattcattttttgaaactttaatgtgggttaaataaataggtgaaaactggctaaatatcattatttattactaatcgtatagaattttaaagtattaaaaaggatccccttacaagcaaggcccttgcatcacagctgttcctgaagaacaaaataatctcccatttgttatgggagaacattgccaaaccatgtttctggcttcttttggttgctgaaacatacangctaatgttaaaagggacatgtcatacatatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="19286" stop="18084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18986" g_stop="18384" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E359400" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18986" e_stop="18384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTTTCTTGACCTTTGTGGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTATTAGTACTTAATATCATAATAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGATCTCAGATATATCCACTGTTATTGTTAAACCTAAACCGTCAAATATCTTTATATGATTTGACTTTTGGAGCCTTCAATGACCTCCACTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTGTTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTATTGAGAATTGGTTTGGATTGTTTTCTGTCAA-TTTTTTTTTTAAAAACGCCTATTCATTTTTT-AAACTTTAATGTGAGTTAAATAAATAGGTGAAAACTGGCTAAACATCATTAATTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGACCCCCTAACAAGCAAGGCCCTTGCATCACAGCTGTTCCTGAAGAACAAAATAATCTCCCATTTGTTATGGGAGAACATTGCCAAACCATGTTTCTGGCTTCTTTTGGTTGCTGAAACATACAGGCTAATGTTAAAAGGGACATGTCATACATATTTGT</genome_strand>
        <mrna_strand>TTTTTGTTTCTTGACCTTCTTAGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTA-T--TACGTAATATCATAACAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGA--TC---TATATCCACTGTTTTTGTTAAACCTAAACCCTCAAATATCTTTATATGATTTGAC-TTTGGAACCTTCAATGACCT---CTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTATTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTTTTGAGAATTGG-TTGGATTGTTTTCTGTCAATTTTTTTTTTTGAAAACGCCTATTCATTTTTTGAAACTTTAATGTGGGTTAAATAAATAGGTGAAAACTGGCTAAATATCATTATTTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGATCCCCTTACAAGCAAGGCCCTTGCATCACAGCTGTTCCTGAAGAACAAAATAATCTCCCATTTGTTATGGGAGAACATTGCCAAACCATGTTTCTGGCTTCTTTTGGTTGCTGAAACATACANGCTAATGTTAAAAGGGACATGTCATACATATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359358" ref_strand="+" ref_description="SGN-E359358 [cLHT-31-H18]">
      <seq>tttttgtttcttgaccttcttagtgcagatctcaatgtaagatttgtttccagaggacctatacatgtattacgtaatatcataacaatgagttttgacagtgcttctgacattgtgcagcgaagtagatctatatccactgtttttgttaaacctaaaccctcaaatatctttatatgatttgactttggaaccttcaatgacctctgtggaatttaaggtgagattttttatggcatttattatttagttgttttggggttgggaacgagtgagtttttgagaattggttggattgttttctgtcaatttttttttttgaaaacgcctattcattttttgaaactttaatgtgggttaaataaataggtgaaaactggctaaatatcattatttattactaatcgtatagaattttaaagtattaaaaaggatccccttacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="19286" stop="18229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18986" g_stop="18529" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E359358" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18986" e_stop="18529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTTTCTTGACCTTTGTGGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTATTAGTACTTAATATCATAATAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGATCTCAGATATATCCACTGTTATTGTTAAACCTAAACCGTCAAATATCTTTATATGATTTGACTTTTGGAGCCTTCAATGACCTCCACTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTGTTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTATTGAGAATTGGTTTGGATTGTTTTCTGTCAA-TTTTTTTTTTAAAAACGCCTATTCATTTTTT-AAACTTTAATGTGAGTTAAATAAATAGGTGAAAACTGGCTAAACATCATTAATTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGACCCCCTAACAAGC</genome_strand>
        <mrna_strand>TTTTTGTTTCTTGACCTTCTTAGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTA-T--TACGTAATATCATAACAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGA--TC---TATATCCACTGTTTTTGTTAAACCTAAACCCTCAAATATCTTTATATGATTTGAC-TTTGGAACCTTCAATGACCT---CTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTATTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTTTTGAGAATTGG-TTGGATTGTTTTCTGTCAATTTTTTTTTTTGAAAACGCCTATTCATTTTTTGAAACTTTAATGTGGGTTAAATAAATAGGTGAAAACTGGCTAAATATCATTATTTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGATCCCCTTACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351431" ref_strand="+" ref_description="SGN-E351431 [cTOS-12-L5]">
      <seq>acagaatgtatgctaatctggtcaaacaacatatctctgggctcatccacttaacaaacattataaaagaaatatgatgttaatacacggccaatgaacctttgttgtggtccagggatgataatgtctcagactcctccgtatttggatctctaaaagctccttcatttggtgttttaagaagcgcacactttggcacccaaagatttgtaattcctattcctttggacaaccagcagtacccatgtcgtggagcaaaagttcacttttttgtccattttctcatgtattggagcagattattcaacatttttggggaacattttcttctgcaatctagatgatcctattgatataaaattatataccattcagtgtgcattactatatgctctatattgagctgaaatccatggtgagcttttgttttgttattactaaatactattttgttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="22988" stop="21930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22689" g_stop="22221" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E351431" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22689" e_stop="22221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGTGCATTACTATATGCTCTATATTGAGCTGAAATCCATGTTGAGCTTTTGTTTTGTTATTACTAAGTACTATTTTGTTCCTACTTCATATT</genome_strand>
        <mrna_strand>ACA-GAATGTATGCTAATCTGGTCAAAC-AACATATCTCTGGGCTCATCCACTTAACAAACATTATAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGTGCATTACTATATGCTCTATATTGAGCTGAAATCCATGGTGAGCTTTTGTTTTGTTATTACTAAATACTATTTTGTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692353" ref_strand="+" ref_description="SGN-E692353 [LH_Ea08H23]">
      <seq>cttttttgaattcttcaatctacgcatgttcctttttttcttggttcctaacaaccctactacggtcacacgaaactcctcgttgataattcgacattcatctctaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacacttctggcgtactaaggacatactaaggacagaagtcatcatcatttcaaggaaaatccaagggactgggtttgtcctaccgctaaagaatttccactgggggctgattcatctatggaacagatcggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggcttatccacttaacaaacattaggaaagaaatatgacgttaatagcgtggccaatgaacctttgttgtggtccagggatgacaatgtctcaaactcctccgtatttggatctctaaaagctccttcatttggtgttttaagaaacgcagactttggcacccaaagatttgtaattcctactcctttggaaaaccagcagtacccatgtcggggagcaaaagttaatttttttgtccattttctcatgtattggagcagattattcaacatttttggggaacattttcttctgcaatctagatgatcctattgatataaaattatataccattcagtgtgacctattgatataaaattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26128" stop="21998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25828" g_stop="25786" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25785" i_stop="24447" i_length="1339">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="157" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="0.41"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="307" r_length="150" r_score="0.810"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22310" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="705" r_length="398" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E692353" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25828" e_stop="25786"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTATGAATTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCT-G-G--C----G---TACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATA-CACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGT</genome_strand>
        <mrna_strand>CTTTTTTGAATTCTTCAATCTACGCATGTTCCTTTTTTTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTACTACGGTCACACGAAACTCCTCGTTGATAATTCGACATTCATCTCTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACACTTCTGGCGTACTAAGGACATACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATCCAAGGGACTGGG--T-TTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTTATCCACTTAACAAACATTAGGAAAGAAATATGACGTTAATAGCGTGGCCAATGAACCTTTGTTGTGGTCCAGGGATGACAATGTCTCAAACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAACGCAGACTTTGGCACCCAAAGATTTGTAATTCCTACTCCTTTGGAAAACCAGCAGTACCCATGTCGGGGAGCAAAAGTTAATTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696193" ref_strand="+" ref_description="SGN-E696193 [LH_Ea08H23](-)">
      <seq>cttttttgaattcttcaatttacgcatgttccttttttttttggttcctaacaaccctactacggtcacacgaaactcctcgttgataattcgacattcatctttaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacacttttggcgtactaaggacatactaaggacagaagtcatcatcatttcaaggaaaatccaagggactgggtttgtcctaccgctaaagaatttccactgggggctgattcatttatggaacagatcggatgcctttaatgcaggaatgtatgctaatttggtcaaacaaacatatttttgggcttatccacttaacaaacattaggaaagaaatatgacgttaatagcgtggccaatgaacctttgttgtggtccagggatgacaatgtttcagactcctccgtatttggatctttaaaagctccttcatttggtgttttaagaaacgcagactttggcacccaaagatttgtaattcctactcctttggaaaaccagcagtacccatgtcggggagcaaaagttaatttttttgtccattttttcatgtattggagcagattattcaacatttttggggaacattttcttttgcaatctagatgatcctattgatagaaaattatataccattcagtggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26128" stop="21999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25828" g_stop="25786" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25785" i_stop="24447" i_length="1339">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="157" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="0.38"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="307" r_length="150" r_score="0.796"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22312" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="703" r_length="396" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="729"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E696193" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25828" e_stop="25786"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTATGAATTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAG-AAA-AC-----GC-TTCT--GG-CGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATA-CACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGT</genome_strand>
        <mrna_strand>CTTTTTTGAATTCTTCAATTTACGCATGTTCCTTTTTTTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTACTACGGTCACACGAAACTCCTCGTTGATAATTCGACATTCATCTTTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACACTTTTGGCGTACTAAGGACATACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATCCAAGGGACTGGG--T-TTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATTTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATGCCTTTAATGCAGGAATGTATGCTAATTTGGTCAAACAAACATATTTTTGGGCTTATCCACTTAACAAACATTAGGAAAGAAATATGACGTTAATAGCGTGGCCAATGAACCTTTGTTGTGGTCCAGGGATGACAATGTTTCAGACTCCTCCGTATTTGGATCTTTAAAAGCTCCTTCATTTGGTGTTTTAAGAAACGCAGACTTTGGCACCCAAAGATTTGTAATTCCTACTCCTTTGGAAAACCAGCAGTACCCATGTCGGGGAGCAAAAGTTAATTTTTTTGTCCATTTTTTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTTTGCAATCTAGATGATCCTATTGATAGAAAATTATATACCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379725" ref_strand="+" ref_description="SGN-E379725 [TUS-3-M7]">
      <seq>ttcttcaatatgcgcatgttcctttttttttcttggtaattagttgatgtgctctcactccaatgaatttgttctcactttcttgcgaatactgatgactgaatttgggatctcttgacaactgaatcggggttcctaacaaccctgctatggtcacacgaaactcctcgttgataattcaacattcatcactaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacgcttctggcgtactaaggacagaagtcatcatcatttcaaggaaaatacaagggactgggtttgttgtcctaccgctaaagaatttccactgggggctgattcatctatggaacagaccggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggctcatccacttaacaaacattagaaaagaaatatgatgttaatacacggccaatgaacctttgttgtggtccagggatgataatgtctcagactcctccgtatttggatctctaaaagctccttcatttggtgttttaagaagcgcacactttggcacccaaagatttgtaattcctattcctttggacaaccagcagtacccatgtcgtgggagcaaagttcacttttttgtccattttctcatgtattggagcagaattattcacatttttggggaacattttcttctgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26118" stop="22051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25818" g_stop="25687" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25686" i_stop="24447" i_length="1240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="245" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="387" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22351" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="743" r_length="356" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E379725" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25818" e_stop="25687"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGT-GGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAG-ATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATC</genome_strand>
        <mrna_strand>TTCTTCAATATGCGCATGTTCC-TTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGGAGC-AAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGAATTATTC-ACATTTTTGGGGAACATTTTCTTCTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379971" ref_strand="+" ref_description="SGN-E379971 [TUS-3-M7](-)">
      <seq>attcttcaatatgcgcatgttcctttttttttcttggtaattagtgatgtgcttctcactccaatgaatttgttctcactttcttgcgaatactgatgactgaatttgggatctcttgacaactgaatcggggttcctaacaaccctgctatggtcacacgaaactcctcgttgataattcaacattcatcactaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacgcttctggcgtactaaggacagaagtcatcatcatttcaaggaaaatacaagggactgggtttgttgtcctaccgctaaagaatttccactgggggctgattcatctatggaacagaccggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggctcatccacttaacaaacattagaaaagaaatatgatgttaatacacggccaatgaacctttgttgtggtccagggatgataatgtctcagactcctccgtatttggatctctaaaagctccttcatttggtgttttaagaagcgcacactttggcacccaaagatttgtaattcctattcctttggacaaccagcagtacccatgtcgtggagcaaaagttcacttttttgtccatttgaacatgtattggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26119" stop="22108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25819" g_stop="25687" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25686" i_stop="24447" i_length="1240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="246" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="388" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22391" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="704" r_length="316" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E379971" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25819" e_stop="25687"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGC-TCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCA</genome_strand>
        <mrna_strand>ATTCTTCAATATGCGCATGTTCC-TTTTTTTTTCTTGGTAATTAG-TGATGTGCTTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTGAACATGTATTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354241" ref_strand="+" ref_description="SGN-E354241 [cTOS-16-O10]">
      <seq>tcaatatgcgcatgttccttttttttttcttggttcctaacaaccctgctatggtcacacgaaactcctcgttgataattcaacattcatcactaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacgcttctggcgtactaaggacagaagtcatcatcatttcaaggaaaatacaagggactgggtttgttgtcctaccgctaaagaatttccactgggggctgattcatctatggaacagaccggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggctcatccacttaacaaacattagaaaagaaatatgatgttaatacacggccaatgaacctttgttgtggtccagggatgataatgtctcagactcctccgtatttggatctctaaaagctccttcatttggtgttttaagaagcgcacactttggcacccaaaagatttgtattcctattcctttgggacaacagcagtacccatgtcgtggagcaaaagtcacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26114" stop="22117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25814" g_stop="25783" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25782" i_stop="24447" i_length="1336">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="146" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="288" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22417" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="577" r_length="289" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E354241" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25814" e_stop="25783"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCC-AAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTT</genome_strand>
        <mrna_strand>TCAATATGCGCATGTTCCTTTTTTTTTTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAAGATTTGT-ATTCCTATTCCTTTGGGACAACAGCAGTACCCATGTCGTGGAGCAAAAG-TCACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353517" ref_strand="+" ref_description="SGN-E353517 [cTOS-15-K2]">
      <seq>tcaatatgcgcatgttccttttttttttcttggttcctaacaaccctgctatggtcacacgaaactcctcgttgataattcaacattcatcactaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacgcttctggcgtactaaggacagaagtcatcatcatttcaaggaaaatacaagggactgggtttgttgtcctaccgctaaagaatttccactgggggctgattcatctatggaacagaccggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggctcatccacttaacaaacattagaaaagaaatatgatgttaatacacggccaatgaacctttgttgtggtccagggatgataatgtctcagactcctccgtatttggatctctaaaagctcctttcattggtgttttaagaagcgcacactttggcacccaaaagatttgtaattcctattcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26114" stop="22160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25814" g_stop="25783" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25782" i_stop="24447" i_length="1336">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="146" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="288" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22460" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="536" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E353517" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25814" e_stop="25783"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCC-AAAGATTTGTAATTCCTATTCCTTTGG</genome_strand>
        <mrna_strand>TCAATATGCGCATGTTCCTTTTTTTTTTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTTCATTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAAGATTTGTAATTCCTATTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207986" ref_strand="+" ref_description="SGN-E207986 [cLEC-34-H16]">
      <seq>ttcttcaatatgcgcatgttcctttttttttcttggtaattagttgatgtgctctcactccaatgaatttgttctcactttcttgcgaatactgatgactgaatttgggatctcttgacaactgaatcggggttcctaacaaccctgctatggtcacacgaaactcctcgttgataattcaacattcatcactaagtcaatatatgttgccaccgaaatacgaacctacaagtgatataccaaagttcccctttttcatggatgaagaaaacgcttctggcgtactaaggacagaagtcatcatcatttgacggaaaatacaagggactgggtttggtgtcctaccgctaaagaatttccactgtgggctgattcatctatggaacagaccggatgcctttaatgcaggaatgtatgctaatctggtcaaacaaacatatctctgggctcatccacttaacaaacattagaaaagaaatatgatgttaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26118" stop="22301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25818" g_stop="25687" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25686" i_stop="24447" i_length="1240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24446" g_stop="24333" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="245" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24206" g_stop="24065" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="387" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22706" g_stop="22601" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="493" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E207986" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25818" e_stop="25687"/>
          <exon e_start="24446" e_stop="24333"/>
          <exon e_start="24206" e_stop="24065"/>
          <exon e_start="22706" e_stop="22601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCATGGCCATGTGAGAGTTGCAATTATAGAATTGCCAGCATAGGAAAAAGACATTCTTTTTTAAATAGACTTAAAAGGAAAGTAAGACAAATATTCTGTGGACGTATTATTCTGCAATGCTAATAATATTCTTATTAGACTGCTCTTGGAAAAGAAAAACTATCCTTAGACTTCTAATGATAGAAGTTTTATAGCTTTGGTGCCATCTTTCGAAGTCCTAGCGACTTAAATGTTATTGCTACCTAGATATGTACATATCTTCCTCTAATTAATTTGATTAAACAAATTCTTTGGTTTATGTCCAAATACATTCAGAAGAAAGACTAAGCTATTGAACTGAAATGATCTACGAACACTCTCTGAAGATGTTATTTCCATAAGTTCTCTGCCAAATGGATTAAGTACAACTTTCTTTCTCATGTGTGGTCCAGGTGAGGAGTGGCATATATGAAGTTACATGATGTTCCGGGATGCCTCATTACTATTGCTATAAATGTTATGCACCTTGAAAGACAATTTTATTTATTACCTTTATTATGTTGTAATTGTTGATGCTTTCGTCAAGGTGATATAACTGCGTCTAGTTGCTGTCCTGTCTTTATGTTTGTTTGGTGTTACTGCATCAAGTTTCAGTATTTCTTCAATAAGATATAAACATCAATATAGTTGTCCAAGTTCCAAACAAACAAAGTATCATAGCTTCTCTTTTATTGTTAAACTCATACTGTTTCTTTTTAACGTGAAAACAAAAGTTGTAGGCTATTATGAAATTTTTTCTACTGCCGTTGGTTGCAGGTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAGGTGAGAGTTGGATTTATGTGAGACTTGTATAGTAGTTTGTGGGATGCTTTGGATGATGGACCAAAAGCTTAATCCAAATAAGACAGTGGAAAAATTTAACAGGACTTACAGTATTTGTTTATGTAGTTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACAGTAAGCTTTCTTTTTTTATGAACGTACGCATGCATGCCTTTCTTTGTTGATTGGTTCAGCGGGATTCTACTATGCATAATTCAATTATCATAGTTAATGAATAGGAATGTCACATGAAATGTTTTAGTAGATTACTTAATATCTAGTATCATTTTATGCCTGCTTTATTAAGATCCCATTATCTTAAGCTCAAAGCCTGGAATCTCTAATAGTTCAAATTTAAACCGATTAACTTCATGGATTTGTTATGTTTTTGAGAGTATCTAAGGATATACAAGTTGGCTAGCTATTTTACTAGTTCCAGGAAATAAGAACCAAACTAACCAATTTTTCTATTTAATTGCATAATTCCCTTTTCTGTTAAAGATGTAGAGATGCATGACGGAGATGGAGATGGTGATAAGCCCAAGTTAGAGCTTGAAGAGATGCATTATGATAAGCCCAATCTTGTGCCAGCCATTGATGCTTGTAGTTCTAGTCTTGACTAAAGATATGTAGAATGTAACAAAAAATATCCTTTATATTTGGTCTTAATCATGCCATGTAAAAAGTTGGAATTATAGAGCTGCCAAAATAGGAAAGGAACATTCTTTTTGAAATGGACTAAAAAGGAAAGTAAGACGAATAAATTAAAACGAAGGAAGTACATAGACTACCATAAATGACCAGGTGGATGGATAATAGTGGACTCATAATTCTGCAATACTAGTAATATTCTTATTAAACTGCCCTTAGAAAAAAAAATATCCTTGACTTTAGGTTGATGCAATCTTTCTAAGTCCTAGTGACTTAACTGAAAACTAGAAAACCTATTGTCAACATATTTGTTCTTTTTAAGTGGATTCAGATTCTGTTTTTTCAAATATGTTATTGCTACTTATATATGTGCATATCGTCCTTAAATTAAGTTGATTATACAAGGTCTTTGGTCTATTTCCTCCTAATACACCTCAGAAGAAAGACCACTTAAGCTATTGTATTGGAATAATCTACAGACTCTCTTGAATATGTTGCTCCCATGATTTATTTTTAGCCTGTGGTCCTGGTGAGGAGTGGAATATATAGATGCTCCACTTAATCCTGCCATGTTCATGAAACGAGAGATATCACATTTACTTTTCTAGAGCAGCTTCTTCAGAATTAGTCGGAAAGCTAAATCTTCTCCTTGTGGAAGTAGCTATGCACATTGAGCTGTACTCTTCTACAAAATGTTTTCTAACTGCAATATCTCATTGGGATTTCTCATGATTCGTAATTTTATTCCTTACTATTTTTGGAACCAATCTTGTGCCAGCTACTCGTATAGTTTCTTTAATTAGTGATTAAAAAATGAATTCAGTCTGCTTTTCTAACTGCAGGACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACA</genome_strand>
        <mrna_strand>TTCTTCAATATGCGCATGTTCC-TTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG..............................................................................................................................TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTGACGGAAAATACAAGGGACTGGGTTTGGTGTCCTACCGCTAAAGAATTTCCACTGTGGGCTGATTCATCTATGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273143" ref_strand="+" ref_description="SGN-E273143 [cLEM-24-L17]">
      <seq>aattcttcaatatgccgcctgttccttttttttttcttggtaattagttgatgtgctctcacctccaatgaatttgttctcacctttcttgcgaatacctgatgacctgaatttgggatctcttgacaactgaatcggggaatgttgctttctattccctttttcttgtttcttgttagttgataaatagtttatgtgctctctacatatcatgattattatattggcaacacaagttttaatctttccacttcattgcattcttggatcttgatatctgaatttgggcatgttcttttttcttttattctgtttaatgcttttttggtgggtttgcatgttggttctaattagttgataaattgttcatgtcctttcttcgtatcatgattcttgacaacgatattgatatttggtaccaatttgttgagaacactttttactttcatgttggtctaactatatatatattgagattacttcttactttcaacaatttccatgtttattgtctagttcttggaagaattttgaatcttgtggttttgactagaatgtatcaaaatgtcaatctttggtcttaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26120" stop="24938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25820" g_stop="25238" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E273143" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25820" e_stop="25238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCAATATG-CGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCA-CTCCAATGAATTTGTTCTCA-CTTTCTTGCGAATA-CTGATGA-CTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCAT</genome_strand>
        <mrna_strand>AATTCTTCAATATGCCGCCTGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACCTCCAATGAATTTGTTCTCACCTTTCTTGCGAATACCTGATGACCTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547430" ref_strand="+" ref_description="SGN-E547430 [TUS-71-E23](-)">
      <seq>cagaggatgagtttggggtgctaaatccagttgggtgttcgtctagttgctcaattttgtcttcagcaaaagtcattggagagtcaagaaggttattgacaaaaaattcatcatcataggactggtggtggatcattttcaaggctattttaggcctaaaataactggtttttcaatgcctttctaaagctgtccatgccctgttgaatgcccaaaaacagaaatggaaaagcattatataaaatgcagaaaaatgggtgtaaaatttcatggaaatcgtgtactcctagacccgatgcattttggtgtgcagaaactgctgcttaattttttatttaatttcatcacctgaagttgtactttcttttgaagcatctggtctcccacaaaatggctggtgctgatgggagaaagatatgcgacatcaaaatactgccattcagatgatatgcatgctttcccagcaagctttggccttaaaggagatgctctgagttctacttctgacgtttccttgttgaaaactgttacaaaaactcacgggaagattttgacggacaagtgtttgcactttggaattgttgattgtagacaagatgttggtacaacaggtatttctgtatgaggctgtatgaggctacctgggacaagagttgactgttgtttgctagtaaggaaatttgttgggatttttctttttgcatttgttgttcctgatgtattttacaaccagccagttcgaaggaagcaaatgcactccaaatacttctagttctctcacaattcaaacgaataaaaaatattgatttacacaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="41071" stop="39345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40771" g_stop="40357" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40356" i_stop="40129" i_length="228">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40128" g_stop="39992" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="556" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39991" i_stop="39903" i_length="89">
            <donor d_prob="0.330" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39902" g_stop="39636" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="823" r_length="267" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E547430" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40771" e_stop="40357"/>
          <exon e_start="40128" e_stop="39992"/>
          <exon e_start="39902" e_stop="39636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGCAAA-GTCATTGGAGAGTCAAGAAGGTTATTGACCAAAAATTCATCATCATAGGACTGGTGGTGGGTCATTTTCAAGGCTATTTTAGGCCTGAAATAACTTGTTGTTTCAATGCCTTTCTGAAGATGTCCATGCCCTGTTGAATGCCCAAAAACAGAAACGGAAAAGCATTATATAAAATGCAGAAAAATGGGTGTAAAATTTCATGGAAATCGTGTACTCCTAGACCCGATGCATTTTGGTGTGCAGAAGGTTCTGCTTAATTTTTTATTTTATTTCATCAGCTG-A-TT-T-TTTTTTTTTGAAGCATCTGGTCTCCCACAAAATGGCTGGTGCTGATGGGAGAAAGATATGGTAATCTTTGTGCAAAATGCTGGGTTGACACCATCTTTTCTATGGTATTGATGCTTCTGTACATAATTTCTTTTGTAGATCTAAAAGTTAAATTAGATGTTCATAACTTGGAGTGGTTGTTGTAGTCTATAGGATTGCATGCATTACTTAAAGATGTTCTCTTATTTATTATGCTTCCTTTTCGTCTGACCATTTTAACTATGGTTTGGTATGCTTGCTTAATACCAGCGACATCAAAATACTGCCATTCAGATGATATGCATGCTTTCCCAGCAAGCTTTGGCCTTAAAGGAGATGCTCTGAGTTCTACTTCTGACGTTTCCTTGTTGAAAATTGTTACAAAAACTCATGGGAAGATTTTGACGGTGAAGTTCTTTTGAGTTTTAGTTGGTAGTATCCGTTAGAATAGGTACTAAACTACTAACTTGTTCTTTGTTCTTCCCATTGTTTACAGGGCAAGTATTTGCACTTTGGAATTGATAATTGTAGACAAGATGTTGGTACAACAGGTATTTCTGTATGAGGCTGTATGAGGCTACCTGGGACAAGAGTTGACTGTTGTTTGCTAGTAAGGAAATTTGTTGGGATTTTACTTTTTGCATTTGTTGTTCCTGATGTATTTTACAACCAGCCAGTTCGAAGGAAGCAAATGCACTCCAAATACTTCTAGTTCTCTCACAATTCAAACGAATAAAAAATATTGATTTACACACTTCACTTC</genome_strand>
        <mrna_strand>CAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGCAAAAGTCATTGGAGAGTCAAGAAGGTTATTGACAAAAAATTCATCATCATAGGACTGGTGGTGGATCATTTTCAAGGCTATTTTAGGCCTAAAATAACTGGTT-TTTCAATGCCTTTCTAAAGCTGTCCATGCCCTGTTGAATGCCCAAAAACAGAAATGGAAAAGCATTATATAAAATGCAGAAAAATGGGTGTAAAATTTCATGGAAATCGTGTACTCCTAGACCCGATGCATTTTGGTGTGCAGAAACTGCTGCTTAATTTTTTATTTAATTTCATCACCTGAAGTTGTACTTTCTTTTGAAGCATCTGGTCTCCCACAAAATGGCTGGTGCTGATGGGAGAAAGATATG....................................................................................................................................................................................................................................CGACATCAAAATACTGCCATTCAGATGATATGCATGCTTTCCCAGCAAGCTTTGGCCTTAAAGGAGATGCTCTGAGTTCTACTTCTGACGTTTCCTTGTTGAAAACTGTTACAAAAACTCACGGGAAGATTTTGACG.........................................................................................GACAAGTGTTTGCACTTTGGAATTGTTGATTGTAGACAAGATGTTGGTACAACAGGTATTTCTGTATGAGGCTGTATGAGGCTACCTGGGACAAGAGTTGACTGTTGTTTGCTAGTAAGGAAATTTGTTGGGATTTTTCTTTTTGCATTTGTTGTTCCTGATGTATTTTACAACCAGCCAGTTCGAAGGAAGCAAATGCACTCCAAATACTTCTAGTTCTCTCACAATTCAAACGAATAAAAAATATTGATTTACACAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547431" ref_strand="+" ref_description="SGN-E547431 [TUS-71-E23]">
      <seq>gatgattccgggacattaagcgaatgcctgaggttatttggagttcaatgtcattatgttttcacaagggttgtttaggagtgtttcaacagctctatgctggtgccacaaagtcattctttatggaaacacgtggagttgttcttgaacccactcgcacaactctaattataagaagttgtgattagtagacttttcgactttgattgtttgttattgttttcatttgagaatcagtagaagtctgctgaggacgtcatagttaagtgactaacggtggcaagtcgtgccttcatgcagttttaatcaattagactgattgcacctgtgaatttgtctgtggcttgcacaaaaggcagtgaccggtgggactttttattttcagcctccattttcgtctaggttgaaacagaggatgagtttggggtgctaaatccagttgggtgttcgtctagttgctcaattttgtcttcagcaaaagtcattggagagtcaagaaggttattgacaaaaaattcatcatcataggactggtggtggatcattttcaaggctattttaggcctaaaataactggtttttcaatgcctttctaaagctgtccatgccctgttgaatgcccaaaaacagaaatggaaaagcattatataaaatgcagaaaaatgggtgtaaaatttcatggaaatcgtgtactcctagacccgatgcattttggtgtgcagaaactgctgcttaattttttatttaatttcatcacctgaaagtgtactttcttttgaagcatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="55670" stop="40094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41252" g_stop="41073" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.811"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41072" i_stop="40991" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40990" g_stop="40394" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="791" r_length="601" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E547431" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41252" e_stop="41073"/>
          <exon e_start="40990" e_stop="40394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTCTTGGGACATTAAGCGAATGCGTGAGGCTATTTGTAGTTCAATGTCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCAACAAAGTCA-----T-T-G----ACGTGGAGTTGTTCTTGAACCCACTCGGACAACTCTAATTATAAGAAGTTGTGATTACTAGTACTTTGAATTAAGTAGTTTAATTATAAGACAGACAGACTTTGTAAACGCCTTCACTGACCATCTTCCTTTACATGGTCTAGACTTTTTGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAAAAGTCTGCTGAGAACGTCATAGTCAAGTGACTAACGGTGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTCTGTGGCTTGCACAAAAGGCAGTGACCGATGGGACTTTTTATTTTCAGCCTCCATTTTCGTCTAGGTTGAAACAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGC-AAAGTCATTGGAGAGTCAAGAAGGTTATTGACCAAAAATTCATCATCATAGGACTGGTGGTGGGTCATTTTCAAGGCTATTTTAGGCCTGAAATAACTTGTTGTTTCAATGCCTTTCTGAAGATGTCCATGCCCTGTTGAATGCCCAAAAACAGAAACGGAAAAGCATTATATAAAATGCAGAAAAATGGGTGTAAAATTTCATGGAAATCGTGTACTCCTAGACCCGATGCATTTTGGTGTGCAGAAGGTTCTGCTTAATTTTTTATTTTATTTCATCAGCTG--A-T-TTTTTTTTTTTGAAGCATCTGGTCT</genome_strand>
        <mrna_strand>GATGATTC-CGGGACATTAAGCGAATGCCTGAGGTTATTTGGAGTTCAATGTCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCCACAAAGTCATTCTTTATGGAAACACGTGGAGTTGTTCTTGAACCCACTCGCACAACTCTAATTATAAGAAGTTGTGATTAGTA..................................................................................GACTTTTCGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAGAAGTCTGCTGAGGACGTCATAGTTAAGTGACTAACGGTGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTCTGTGGCTTGCACAAAAGGCAGTGACCGGTGGGACTTTTTATTTTCAGCCTCCATTTTCGTCTAGGTTGAAACAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGCAAAAGTCATTGGAGAGTCAAGAAGGTTATTGACAAAAAATTCATCATCATAGGACTGGTGGTGGATCATTTTCAAGGCTATTTTAGGCCTAAAATAACTGGTT-TTTCAATGCCTTTCTAAAGCTGTCCATGCCCTGTTGAATGCCCAAAAACAGAAATGGAAAAGCATTATATAAAATGCAGAAAAATGGGTGTAAAATTTCATGGAAATCGTGTACTCCTAGACCCGATGCATTTTGGTGTGCAGAAACTGCTGCTTAATTTTTTATTTAATTTCATCACCTGAAAGTGTACTTTCTTTTGAAGCATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361851" ref_strand="+" ref_description="SGN-E361851 [cLPP-12-N13]">
      <seq>atgattccgggacattaagcgaatgcctgaggttatttggagttcaatgtcattatgttttcacaagggttgtttaggagtgtttcaacagctctatgctggtgccacaaagtcattctttatggaaacacgtggagttgttcttgaacccactcgcacaactctaattataagaagttgtgattagtagacttttcgactttgattgtttgttattgttttcatttgagaatcagtagaagtctgctgaggacgtcatagttaagtgactaacggtggcaagtcgtgccttcatgcagttttaatcaattagactgattgcacctgtgaatttgtctgtggcttgcacaaaaggcagtgaccggtgggactttttattttcagcctccattttcgtctaggttgaaacagaggatgagtttggggtgctaaatccagttgggtgttcgtctagttgctcaattttgtcttcagcaaaagtcattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="55670" stop="40392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41251" g_stop="41073" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41072" i_stop="40991" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40990" g_stop="40692" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="489" r_length="300" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E361851" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41251" e_stop="41073"/>
          <exon e_start="40990" e_stop="40692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCTTGGGACATTAAGCGAATGCGTGAGGCTATTTGTAGTTCAATGTCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCAACAAAGTCA-----T-T-G-A---CGTGGAGTTGTTCTTGAACCCACTCGGACAACTCTAATTATAAGAAGTTGTGATTACTAGTACTTTGAATTAAGTAGTTTAATTATAAGACAGACAGACTTTGTAAACGCCTTCACTGACCATCTTCCTTTACATGGTCTAGACTTTTTGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAAAAGTCTGCTGAGAACGTCATAGTCAAGTGACTAACGGTGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTCTGTGGCTTGCACAAAAGGCAGTGACCGATGGGACTTTTTATTTTCAGCCTCCATTTTCGTCTAGGTTGAAACAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGC-AAAGTCATTGGAG</genome_strand>
        <mrna_strand>ATGATTC-CGGGACATTAAGCGAATGCCTGAGGTTATTTGGAGTTCAATGTCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCCACAAAGTCATTCTTTATGGAAACACGTGGAGTTGTTCTTGAACCCACTCGCACAACTCTAATTATAAGAAGTTGTGATTAGTA..................................................................................GACTTTTCGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAGAAGTCTGCTGAGGACGTCATAGTTAAGTGACTAACGGTGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTCTGTGGCTTGCACAAAAGGCAGTGACCGGTGGGACTTTTTATTTTCAGCCTCCATTTTCGTCTAGGTTGAAACAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGCAAAAGTCATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537751" ref_strand="+" ref_description="SGN-E537751 [TUS-56-I6]">
      <seq>gagatattgaacccacgcacgtcgttctgattagcaattttgatgcttttaattcgtaatgtgtcgtcatcttttgataaaaaccagctcaagaatgaggcattcgaacgaaatgttgaattattgaggggtggttgcctccctcctcttgtaaaccctaattctatttttgaagttttgcatttctatgcatcttttatagcttcaaagtttagattcctcccactgatggatatatgtctgtctaaatgtggaaaaaaacatgacaatcacttcttttcaggctggttagtccatttttaggtttcaataacactgttaatatcagttctgtgttccatcttgttgaaaccaagaaggatttttgagggtttaaccctttgaagtgtcattgttgtgtattgtctcttaaggtccattttatgttttatttgggttgattatagccagtgaattatgaattgtaactttaagggaagatcttttttgttcaaacattcaaatgagaggctctgatatctatttttgacgtttctttgttggaaattgttactaatactcattggaggccaaacggacattgtaaggatttgaaggttaaatttctttgagttttagttgttagtattcattaagatagctttcaaacaaatcccctagtctttgttcttgccattgtttacaggatgacnagtgtttgtaccttggaatttgatgattgtacacaatatattggcacaccaggtaattctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="44658" stop="43327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44358" g_stop="43630" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E537751" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44358" e_stop="43630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTGAAATCACGCACGTCCTTCTGATTAGCAATTTTGATGCTTTTCATTCGTAATGTGTCTCCATCTTTTGATAAGTACCAGCTCAAGAACGAGGCATTTAAATGAAATGTTGGATTATTGAGGGGTGTTTG-CGGCCACCTCTTGTAAGCCCAGATCCTATTTTTGATGTTTTGCATTGTTATGCATCTTTTATAGCTTCAACGTTTATATTCCTCCCACTGATGGATATATGTATGTCTAAATG-CGAAAAAAACATGACAAACACTTCTTCTCAGGCTGGTTATTCCATTTTGAGGTGTCAATAACACTGTTTATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTCTTGTGTATTGTCTCTTAAGGTCCA-TTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATGGTAACTTATAAGGGAAGAGCTTTTTTGTTCAAACATTCTAATGAGATGCTCTGCTATCTATTTTTGACGTTTCTTTGTTTGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATGGTAAGATTTTGAAGGTTAAAGTTCTTTGAGTTTTAATTGGTATTATTCATTAAGATAGCTTTCAAACAACTAACCTAGTCTTTGTTCTTGCCATTGTTTACAGGACGGCAAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATAT</genome_strand>
        <mrna_strand>GAGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTT-TAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATTGTAAGGATTTGAAGGTTAAATTTCTTTGAGTTTTAGTTGTTAGTATTCATTAAGATAGCTTTCAAACAAATCCCCTAGTCTTTGTTCTTGCCATTGTTTACAGGATGACNAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266928" ref_strand="+" ref_description="SGN-E266928 [cLEI-7-I10]">
      <seq>agatattgaacccacgcacgtcgttctgattagcaattttgatgcttttaattcgtaatgtgtcgtcatcttttgataaaaaccagctcaagaatgaggcattcgaacgaaatgttgaattattgaggggtggttgcctccctcctcttgtaaaccctaattctatttttgaagttttgcatttctatgcatcttttatagcttcaaagtttagattcctcccactgatggatatatgtctgtctaaatgtggaaaaaaacatgacaatcacttcttttcaggctggttagtccatttttaggtttcaataacactgttaatatcagttctgtgttccatcttgttgaaaccaagaaggatttttgagggtttaaccctttgaagtgtcattgttgtgtattgtctcttaaggtccattttatgttttatttgggttgattatagccagtgaattatgaattgtaactttaagggaagatcttttttgttcaaacattcaaatgagaggctctgatatctatttttgacgtttctttgttggaaattgttactaatactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="44657" stop="43497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44357" g_stop="43797" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E266928" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44357" e_stop="43797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTGAAATCACGCACGTCCTTCTGATTAGCAATTTTGATGCTTTTCATTCGTAATGTGTCTCCATCTTTTGATAAGTACCAGCTCAAGAACGAGGCATTTAAATGAAATGTTGGATTATTGAGGGGTGTTTG-CGGCCACCTCTTGTAAGCCCAGATCCTATTTTTGATGTTTTGCATTGTTATGCATCTTTTATAGCTTCAACGTTTATATTCCTCCCACTGATGGATATATGTATGTCTAAATG-CGAAAAAAACATGACAAACACTTCTTCTCAGGCTGGTTATTCCATTTTGAGGTGTCAATAACACTGTTTATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTCTTGTGTATTGTCTCTTAAGGTCCA-TTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATGGTAACTTATAAGGGAAGAGCTTTTTTGTTCAAACATTCTAATGAGATGCTCTGCTATCTATTTTTGACGTTTCTTTGTTTGAAATTGTTACTAATACTCATT</genome_strand>
        <mrna_strand>AGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTT-TAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714641" ref_strand="+" ref_description="SGN-E714641 [FB12AB03]">
      <seq>gcagcgaccaacagcagtcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatcttttttctttcaaatttgccgagttacttttctaatgatcattaatggcattgtataatcattgattggtcgacgatagtcaattgcctgtatcacaaattcaagaattttgtgtgagcattacacgaaccattcccattgaagaaatatatttttcaagtttcataatttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59156" stop="57473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58856" g_stop="58718" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57774" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="955" r_length="815" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="957" polyA_stop="970"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E714641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58856" e_stop="58718"/>
          <exon e_start="58586" e_stop="57774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGACCAACAG-AGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAAATTTGCCGAGTTACTTTTCTAATGATCATTAATGGCATTGTATAATCATTGATTGGTCGACGATAGTCAATTGCCTGTATCACAAATTCAAGA-TTTTGTGTGAGCATTACACGAACAATT-CCATTGAAGAAATATATTTTTCAAGTTTCATAATTG</genome_strand>
        <mrna_strand>GCAGCGACCAACAGCAGTCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAAATTTGCCGAGTTACTTTTCTAATGATCATTAATGGCATTGTATAATCATTGATTGGTCGACGATAGTCAATTGCCTGTATCACAAATTCAAGAATTTTGTGTGAGCATTACACGAACCATTCCCATTGAAGAAATATATTTTTCAAGTTTCATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745229" ref_strand="+" ref_description="SGN-E745229 [GI|825520]">
      <seq>aaggagagagcataagtaaataatccagcaaacaaaacaagcattactctattctctaatgacttcaaatacatgcaatgaccttcatttcctattccagccacattagattcagcattttcttaacctcaatccccaaaaatgttccatgacaagattcaaactttatgattaaaatttcaatccccaaagtttaaatagaaaacacatcccctaatacacacacaataataatgaagtaaagaaaaacagctcacagtatttctcttctatactagtctagataagaataacagctcttaatcaaaatacacaactaaatcaacgtctaaataacatccacgtgtgagcatctaattaattcttcagaaaacttcgatccgtgtcaccttaaattgaccaatcaaaatgcagagaattgtgaaaccaggatcgttactcttattataaattgcgtaagttgcattacagaatgatcagagaaacggttattgagatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcaggtattttttatcaattcatcgatagataaagctgtgcttttcattattattttgccgatgttcatcgtgtatagatcatataacttgcaaatttcaacttgattaagttttttggtatggaattcctgcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtgtagatcttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatcttttttctttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59689" stop="57629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59424" g_stop="57930" g_length="1495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1482" r_length="1482" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1483" polyA_stop="1511"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E745229" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1495</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59424" e_stop="57930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGAGAGCATAAAGTTAAAAATAAATCAGCAAAAGAAAAACAAATGATTACTCTATTTCTCTAATGACTTCAAAATACATGCAAATGACCTTCATTTTTCCTATTTCCAGCCACATTAGATTCAGCATTTTCTTAACCTCAATCCCCAAAAATGTTCCATGACAAGATTCAAACTTTATGATTAAAATTTCAATCCCCAAAGTTTAAATAGAAAACACATCCCCTAATACACACACAATAATAATGAAGTAAAGAAAAACAGCTCACAGTATTTCTCTTCTATACTAGTCTAGATAAGAATAACAGCTCTTAATCAAAATACACAACTAAATCAACGTCTAAATAACATCCACGTGTGAGCATCTAATTAATTCTTCAGAAAACTTCGATCCGTGTCACCTTAAATTGACCAATCAAAATGCAGAGAATTGTGAAACCAGGATCGTTACTCTTATTATAAATTGCGTAAGTTGCATTACAGAATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</genome_strand>
        <mrna_strand>AAGGAGAGAGCAT-AAG-T--AAATAATCCAGC-AAACA-AAAC-AAGCATTACTCTA-TTCTCTAATGACTTC-AAATACATGC-AATGACCTTCA--TTTCCTA-TTCCAGCCACATTAGATTCAGCATTTTCTTAACCTCAATCCCCAAAAATGTTCCATGACAAGATTCAAACTTTATGATTAAAATTTCAATCCCCAAAGTTTAAATAGAAAACACATCCCCTAATACACACACAATAATAATGAAGTAAAGAAAAACAGCTCACAGTATTTCTCTTCTATACTAGTCTAGATAAGAATAACAGCTCTTAATCAAAATACACAACTAAATCAACGTCTAAATAACATCCACGTGTGAGCATCTAATTAATTCTTCAGAAAACTTCGATCCGTGTCACCTTAAATTGACCAATCAAAATGCAGAGAATTGTGAAACCAGGATCGTTACTCTTATTATAAATTGCGTAAGTTGCATTACAGAATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTGTAGATCTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715553" ref_strand="+" ref_description="SGN-E715553 [FB14CE03]">
      <seq>atttttgagaattgagaagatgacggcaatcgtgagaagttgagaaccccgaccgttgtgcagcgaccaacataggcttccaaggttaaggagcacgcttctgcgacagacaaagctgttaaggagaataaacctaaggctcccaaagagaataagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaactagaaaggtggatcgagtccgtatgcatgtgctagatacatggaagactaacatagggatgagattaccagcaaatttcatgaaaattctatgtcttcaattgaataattctgcatcaaaggggaacctaatcaaaatcaaggcttcatactaactatctgaggctggaaataaggagactacaacctcaacgtctaccgaaaagctccccaaggccgattctaagaataaacctataagcaccacggccacttcaactgcagcgaataaatacagaggtgccgaagaaagcaaaagcgacgcccaaaccaaacaaggttggagccaagaggacaaggaagtctactccggcgaatgcaaagcaaccaaagtctatcaagtctcctgctgctataagggccaagaaaattgcagtttaagcatggcggtgggataataccgactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagacatctagttcggtagtgtatgtcaggtttgctgacgtttggttaatgaaggctctgtatctctgcaaattaaagcgttgttctgtcaataatcatctttttttcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59213" stop="57629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58913" g_stop="58718" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57930" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="857" r_length="659" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E715553" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58913" e_stop="58718"/>
          <exon e_start="58586" e_stop="57930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAATTGAGAAGATGACGGCAATCG-GAGAAGTTGAGAACCCCG-CCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGA-ATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAA-ACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</genome_strand>
        <mrna_strand>ATTTTTGAGAATTGAGAAGATGACGGCAATCGTGAGAAGTTGAGAACCCCGACCGTTGTGCAGCGACCAACATAGGCTTCCAAGGTTAAGGAGCACGCTTCTGCGACAGACAAAGCTGTTAAGGAGAATAAACCTAAGGCTCCCAAAGAGAATAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACTAGAAAGGTGGATCGAGTCCGTATGCATGTGCTAGATACATGGAAGACTAACATAGGGATGAGATTACCAGCAAATTTCATGAAAATTCTATGTCTTCAATTGAATAATTCTGCATCAAAGGGGAACCTAATCAAAATCAAGGCTTCATACTAACTATCTGAGGCTGGAAATAAGGAGACTACAACCTCAACGTCTACCGAAAAGCTCCCCAAGGCCGATTCTAAGAATAAACCTATAAGCACCACGGCCACTTCAACTGCAGCGAATAAATACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCCAAACCAAACAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAATGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTATAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACCGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGACATCTAGTTCGGTAGTGTATGTCAGGTTTGCTGACGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAAGCGTTGTTCTGTCAATAATCATCTTTTTTTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706847" ref_strand="+" ref_description="SGN-E706847 [FA31AD09]">
      <seq>cgggtcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggcccagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggcagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatcttttttctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59189" stop="57629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58892" g_stop="58718" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57930" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="832" r_length="657" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="842"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E706847" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58892" e_stop="58718"/>
          <exon e_start="58586" e_stop="57930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</genome_strand>
        <mrna_strand>CGGGTCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCCAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGCAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543624" ref_strand="+" ref_description="SGN-E543624 [TUS-65-I15](-)">
      <seq>ttcaggtattttttatcaatgcatcgatagataaagctgtgcttttcattattatttcgccgatgttcatcgtgtatagatcatataacttgcaaatttcaacttgattaagttctttggtatggaattcctgcagatgattaaggaggctctgttgtctctgcacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattgccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaacctatctgaggctggaaagaaggagactacaccaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcacctgcagcgaagaaaacagaggtgccgaagaaagcaaaagggacgccaaaaccgaagaaggttggagccaagaggccaaggaagtctactccggggaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaagatgaagcttagcttttacttttcagtcatctagttctggtagtgtaggtcgggtttgctgaagtttggttaatgaagggctctgtatctctgcaaattaggggcgttgttctgtcgaataatcatcttttttctttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59022" stop="57629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58722" g_stop="57930" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="800" polyA_stop="815"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E543624" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58722" e_stop="57930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAA-ATGAAGCTTAGCTTTTAC-TTTCAGTCATCTAGTTC-GGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAA-GGCTCTGTATCTCTGCAAATTA-AGGCGTTGTTCTGTC-AATAATCATCTTTTTTCTTTCAA</genome_strand>
        <mrna_strand>TTCAGGTATTTTTTATCAATGCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTCGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTCTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGCACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTGCCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAACCTATCTGAGGCTGGAAAGAAGGAGACTACACCAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCACCTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGGGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGCCAAGGAAGTCTACTCCGGGGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAGATGAAGCTTAGCTTTTACTTTTCAGTCATCTAGTTCTGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGGCTCTGTATCTCTGCAAATTAGGGGCGTTGTTCTGTCGAATAATCATCTTTTTTCTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227704" ref_strand="+" ref_description="SGN-E227704 [cLEL-30-L11](-)">
      <seq>aaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatcttttttctttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="58670" stop="57629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58370" g_stop="57930" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="458"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E227704" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58370" e_stop="57930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</genome_strand>
        <mrna_strand>AAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725092" ref_strand="+" ref_description="SGN-E725092 [FC26AB11]">
      <seq>aatcggccgaattgagagaaacggttattgagatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatcttttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59235" stop="57633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58940" g_stop="58718" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="230" r_length="221" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57933" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="884" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E725092" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58940" e_stop="58718"/>
          <exon e_start="58586" e_stop="57933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTT</genome_strand>
        <mrna_strand>AAT--TGAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718600" ref_strand="+" ref_description="SGN-E718600 [FC05AF03]">
      <seq>gatcagagaaacggttattgagatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataatcatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59237" stop="57639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58937" g_stop="58718" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57939" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="868" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E718600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58937" e_stop="58718"/>
          <exon e_start="58586" e_stop="57939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTT</genome_strand>
        <mrna_strand>GATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714873" ref_strand="+" ref_description="SGN-E714873 [FB12CG04]">
      <seq>gatatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59218" stop="57648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58918" g_stop="58718" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57949" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="839" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E714873" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58918" e_stop="58718"/>
          <exon e_start="58586" e_stop="57949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATA</genome_strand>
        <mrna_strand>GATATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714518" ref_strand="+" ref_description="SGN-E714518 [FB11CG01]">
      <seq>gagatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgcaaattaaggcgttgttctgtcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59218" stop="57648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58918" g_stop="58718" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57949" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="839" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E714518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58918" e_stop="58718"/>
          <exon e_start="58586" e_stop="57949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATA</genome_strand>
        <mrna_strand>GAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704439" ref_strand="+" ref_description="SGN-E704439 [FA24BB11]">
      <seq>atatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggggggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttccggtagtgtaggtcgggtttgctgaagtttggttaatgaaagctctgtatctctgccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59215" stop="57670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58915" g_stop="58718" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57969" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="817" r_length="619" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E704439" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58915" e_stop="58718"/>
          <exon e_start="58586" e_stop="57969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTT-CGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATT</genome_strand>
        <mrna_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGGGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAAGCTCTGTATCTCTGCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203533" ref_strand="-" ref_description="SGN-E203533 [cLEC-15-K8]">
      <seq>agtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacaggctgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgccccagtttggctaatgaaggctctgtatctctgcaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="58841" stop="57667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58541" g_stop="57972" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="594"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E203533" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58541" e_stop="57972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAA</genome_strand>
        <mrna_strand>AGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGGCTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCCCCAGTTTGGCTAATGAAGGCTCTGTATCTCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717000" ref_strand="+" ref_description="SGN-E717000 [FB18CF04]">
      <seq>atttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59213" stop="57673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58913" g_stop="58718" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="57973" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="810" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E717000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58913" e_stop="58718"/>
          <exon e_start="58586" e_stop="57973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCA</genome_strand>
        <mrna_strand>ATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345051" ref_strand="+" ref_description="SGN-E345051 [cTOF-22-J16]">
      <seq>ttaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgctgaagtttggttaatgaaggctctgtatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="58793" stop="57675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58493" g_stop="57975" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E345051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58493" e_stop="57975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTG</genome_strand>
        <mrna_strand>TTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274390" ref_strand="+" ref_description="SGN-E274390 [cLEN-19-E2]">
      <seq>ggatcgatttcgtatgcagttgctaaatacatggaagacaaacataaggatgaattacaagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctaattcggtagtgtaggtcgggtttgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="58847" stop="57704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58547" g_stop="58004" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E274390" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58547" e_stop="58004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAA</genome_strand>
        <mrna_strand>GGATCGATTTCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACAAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAATTCGGTAGTGTAGGTCGGGTTTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343381" ref_strand="+" ref_description="SGN-E343381 [cTOF-19-E2]">
      <seq>ggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59078" stop="57708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58778" g_stop="58718" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58008" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="640" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E343381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58778" e_stop="58718"/>
          <exon e_start="58586" e_stop="58008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGC</genome_strand>
        <mrna_strand>GGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721323" ref_strand="+" ref_description="SGN-E721323 [FC13BH12]">
      <seq>tcggccgaattgagagaaacggttacccataaagttttgagaattgagaagatgacggcaatcggagactttaaaaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcggtagtgtaggtcgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59217" stop="57712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58940" g_stop="58718" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="228" r_length="221" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58012" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="803" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E721323" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58940" e_stop="58718"/>
          <exon e_start="58586" e_stop="58012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGT</genome_strand>
        <mrna_strand>AAT--TGAGAGAAACGGTTACCCATAAAGTTTTGAGAATTGAGAAGATGACGGCAATCGGAGACTTTAAAAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719560" ref_strand="+" ref_description="SGN-E719560 [FC08AH10]">
      <seq>tcggccgaattcccatggggatccgatgagagaaacggttattgagatatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactttcagtcatctagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59237" stop="57728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58940" g_stop="58718" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="244" r_length="223" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58028" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="803" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E719560" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58940" e_stop="58718"/>
          <exon e_start="58586" e_stop="58028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCG</genome_strand>
        <mrna_strand>TCCGATGAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698212" ref_strand="+" ref_description="SGN-E698212 [FA05CD09]">
      <seq>atatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggcccagaaaattgcagtttaagcatggcggtgggataatacagactgtatataagaggaataatggtttgctgcttgtagctctgtgaataggaaaaatgaagcttagcttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59215" stop="57744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58915" g_stop="58718" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58044" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="741" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E698212" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58915" e_stop="58718"/>
          <exon e_start="58586" e_stop="58044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTT</genome_strand>
        <mrna_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCCAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333146" ref_strand="+" ref_description="SGN-E333146 [cTOD-19-F2]">
      <seq>tatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaatgaagtctactccggcgaatgcaaagcaaccaaagtctatccagtctcctgctgctataagggccaagaaaattgcagtttaagcatggcggtggggatatacagactgtatataagaggaataatggtttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59214" stop="57787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58914" g_stop="58718" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58087" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="697" r_length="500" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E333146" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58914" e_stop="58718"/>
          <exon e_start="58586" e_stop="58087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGC</genome_strand>
        <mrna_strand>TATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAATGAAGTCTACTCCGGCGAATGCAAAGCAACCAAAGTCTATCCAGTCTCCTGCTGCTATAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGGATATACAGACTGTATATAAGAGGAATAATGGTTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242304" ref_strand="+" ref_description="SGN-E242304 [cLEE-3-C4]">
      <seq>agaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgctgctaaaagggccaagaaaattgcagtttaagcatggcggtgggataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59088" stop="57822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58788" g_stop="58718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58122" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="536" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E242304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58788" e_stop="58718"/>
          <exon e_start="58586" e_stop="58122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAAT</genome_strand>
        <mrna_strand>AGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318656" ref_strand="+" ref_description="SGN-E318656 [cTOB-9-A19]">
      <seq>tatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacgccaaaaccgaagaaggttggagccaagaggacaaggaagtctactccggcgaaggcaaagcaaccaaagtctatcaagtctcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59214" stop="57870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58914" g_stop="58718" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58170" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="614" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E318656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58914" e_stop="58718"/>
          <exon e_start="58586" e_stop="58170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCT</genome_strand>
        <mrna_strand>TATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291632" ref_strand="+" ref_description="SGN-E291632 [cLET-6-L10]">
      <seq>ttttgagaattgaaaaaatgacggcattcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59211" stop="57957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58911" g_stop="58718" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58257" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="524" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E291632" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58911" e_stop="58718"/>
          <exon e_start="58586" e_stop="58257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACG</genome_strand>
        <mrna_strand>TTTTGAGAATTGAAAAAATGACGGCATTCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286843" ref_strand="+" ref_description="SGN-E286843 [cLES-14-J11]">
      <seq>ggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaacagaggtgccgaagaaagcaaaagcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59189" stop="57958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58889" g_stop="58718" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58258" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="501" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E286843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58889" e_stop="58718"/>
          <exon e_start="58586" e_stop="58258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGAC</genome_strand>
        <mrna_strand>GGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288576" ref_strand="+" ref_description="SGN-E288576 [cLES-8-J9]">
      <seq>ggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaagctccccaaggccgattctaagaagaaacctagaagcaccagggccacttcaactgcagcgaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59189" stop="57985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58889" g_stop="58718" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58285" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E288576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58889" e_stop="58718"/>
          <exon e_start="58586" e_stop="58285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAAC</genome_strand>
        <mrna_strand>GGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318944" ref_strand="+" ref_description="SGN-E318944 [cTOB-11-N4]">
      <seq>gaggatatttttgagaattgagaagatgacggcaatcggagaagttgagaacccccgccgttgtgcagcgaccaacagaggccttccaaggttaaagagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcataccaaacctatctgaggctggaaagaaggagactaccaccaaaaacgtctaccaaaaagctccccaaggccgattctaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59218" stop="58029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58918" g_stop="58718" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58329" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="465" r_length="261" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E318944" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58918" e_stop="58718"/>
          <exon e_start="58586" e_stop="58329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-GATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAA-CCCCGCCGTTGTGCAGCGACCAACAGAGG-CTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATA-CAAA-CTATCTGAGGCTGGAAAGAAGGAGACTA-CAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAG</genome_strand>
        <mrna_strand>GAGGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCCGCCGTTGTGCAGCGACCAACAGAGGCCTTCCAAGGTTAAAGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACCAAACCTATCTGAGGCTGGAAAGAAGGAGACTACCACCAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241142" ref_strand="+" ref_description="SGN-E241142 [cLED-26-L1]">
      <seq>tgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaagaaggagactacaacaaaaacgtctaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59208" stop="58054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58908" g_stop="58718" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58354" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="424" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E241142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58908" e_stop="58718"/>
          <exon e_start="58586" e_stop="58354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAA</genome_strand>
        <mrna_strand>TGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543625" ref_strand="+" ref_description="SGN-E543625 [TUS-65-I15]">
      <seq>atatttttgagaattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcaggcttcggcgacagagaacgctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcaggtattttttatcaattcatcgatagataaagctgtgcttttcattattattttgccgatgttcatcgtgtatagatcatataacttgcaaattgcaacttgattaagttttttggtatggaattcctgcagatgattaaggaggctctgttgtctctgaacgagaaacgtggatcgagtccgtatgcacttgctcaatacatggaagacaacataacgatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggcgaagctaatcaaaatcaaggcttcatacaaactatctgatgctggacagaaggagactacaacacaaacgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59215" stop="58061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58915" g_stop="58361" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E543625" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58915" e_stop="58361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTA</genome_strand>
        <mrna_strand>ATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAACGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTGCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAACGTGGATCGAGTCCGTATGCACTTGCTCAATACATGGAAGAC-AACATAACGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGCGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGATGCTGGACAGAAGGAGACTACAACACAAACGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295048" ref_strand="+" ref_description="SGN-E295048 [cLET-40-M19]">
      <seq>aattgagaagatgacggcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacagaggcttccaaggttaaggagcatgcttcggcgacagagaaggctgttaaggagaagaaacctacggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcctaggggaagctaatcaaaatcaaggcttcatacaaactatctgaggctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59204" stop="58086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58904" g_stop="58718" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58386" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="388" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E295048" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58904" e_stop="58718"/>
          <exon e_start="58586" e_stop="58386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAG</genome_strand>
        <mrna_strand>AATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCATGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTACGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCCTAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277817" ref_strand="-" ref_description="SGN-E277817 [cLEL-5-A4](-)">
      <seq>gcacgagatttttgagaattgagaagatgacggcaatcggagaagttgagaacgccgccgttgtgcagcgaccaacacaggcttccaaggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctagggctcccaaagagaagaagcctaaatctgccaaggctgttactcatcctccttattttcagatgattaaggaggctctgttgtctctgaacgagaaaggtggatcgagtccgtatgcagttgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaggaaaattctaggtcttcaattgaagaattctgcagcaaaggggaagctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59216" stop="58126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58920" g_stop="58718" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58586" g_stop="58426" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="364" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E277817" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277817" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58920" e_stop="58718"/>
          <exon e_start="58586" e_stop="58426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAAT</genome_strand>
        <mrna_strand>GCACGAGATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACGCCGCCGTTGTGCAGCGACCAACACAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG...................................................................................................................................ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304758" ref_strand="+" ref_description="SGN-E304758 [cLEX-11-J24]">
      <seq>ttgagaagatgactgcaatcggagaagttgagaaccccgccgttgtgcagcgaccaacacaggcttccatggttaaggagcaggcttcggcgacagagaaggctgttaaggagaagaaacctatggctcccaaagagaagaagcctaaatctgccaaggctgatactcatcctccttattttcaggtattttttatcaattcatcgatagataaagctgtgcttttcattattattttgccgatgttcatcgtgtatagatcatataacttgcaaatttcaacttgattaagttttttggtatggaattcctgcagatgattaaggaggctctgttgtctttgaacgagaaaggtggatcgagtccgtatgcaggtgctaaatacatggaagacaaacataaggatgaattaccagcaaatttcaagaaaattctaggtcttcaattgaagaattctgcaacaaaggggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="-" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="59202" stop="58130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58902" g_stop="58430" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="-" ref_id="SGN-E304758" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58902" e_stop="58430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGC</genome_strand>
        <mrna_strand>TTGAGAAGATGACTGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACACAGGCTTCCATGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTATGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGATACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTTTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGGTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAAGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAACAAAGGGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292711" ref_strand="+" ref_description="SGN-E292711 [cLET-11-F9]">
      <seq>aaagaagaaaaagaaaaaagaaaacaaagaggaacagataaaaaaaaaagacaacaaaaagaggcttttggcatcgaatctctcacctctgcatcggttctaatcaattttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="61996" stop="66206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62296" g_stop="62436" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="195" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="65906" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="522" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E292711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62296" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="65906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCAT</genome_strand>
        <mrna_strand>AAAGAAGAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339898" ref_strand="+" ref_description="SGN-E339898 [cTOF-3-F11]">
      <seq>gaaaaagaaaaaagaaaacaaagaggaacagataaaaaaaaaagacaacaaaaagaggcttttggcatcgaatctctcacctctgcatcggttctaatcaattttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagtgggtaaaattagcacagacagtttaagcatgcaggtcatagccacaacatcagatgattgggtaaatctgcaagagatggatagtgacaaggaaggagatacacagctcacatcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62002" stop="66450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62302" g_stop="62436" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="66150" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="760" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E339898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62302" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="66150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGA</genome_strand>
        <mrna_strand>GAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319881" ref_strand="+" ref_description="SGN-E319881 [cTOB-12-O21]">
      <seq>aaaaagaaaaaagaaaacaaagaggaacagataaaaaaaaaagacaacaaaaagaggcttttggcatcgaatctctcacctctgcatcggttctaatcaattttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62003" stop="66200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62303" g_stop="62436" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="188" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="65900" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="509" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E319881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62303" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="65900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCT</genome_strand>
        <mrna_strand>AAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323577" ref_strand="+" ref_description="SGN-E323577 [cTOC-2-H13]">
      <seq>caaaaagaggcttttggcatcgaatctctcacctctgcatcggttctaatcaattgtctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62050" stop="66206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62350" g_stop="62436" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="141" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="65906" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="468" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E323577" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62350" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="65906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCAT</genome_strand>
        <mrna_strand>CAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTGTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310445" ref_strand="+" ref_description="SGN-E310445 [cTOA-9-A19]">
      <seq>tcacctctgcatcggttctaatcaattttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcaaagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62078" stop="66278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62378" g_stop="62436" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="113" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="65978" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="512" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E310445" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62378" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="65978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAG</genome_strand>
        <mrna_strand>TCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAAAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717863" ref_strand="+" ref_description="SGN-E717863 [FC02DH04]">
      <seq>gacctctgcatcggttctaatcaattttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgaaagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcaaagcgagacatggcaatgcttcaaagagatgcagcacttgcaaagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagtgggtaaaattagcacagacagtttaagcatgcaggtcatagccacaacatcagatgattgggtaaatctgcaagagatggatagtgacaaggaaggagatacacagctcacatcatggaaagataatttggggttgaaaatcaattttgatgactctgctatgccagtgcctgtttgctcctgtactgggactccacagccatgctataaatggggtcatggtgggtggcagtcagcttgctgcacaactaccatatctatgtatccattacctcaaatatcaaacaaacgctattcccgtgtgggtggaagaaagatgagtggtggtgccttcagtaaattgcttaatcgtcttgctgctcaaggttatgacctgtctattccacttgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62080" stop="66726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62379" g_stop="62436" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="112" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="66426" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="959" r_length="847" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E717863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62379" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="66426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGA</genome_strand>
        <mrna_strand>GACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAAAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAAAGCGAGACATGGCAATGCTTCAAAGAGATGCAGCACTTGCAAAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698950" ref_strand="+" ref_description="SGN-E698950 [FA08AD08]">
      <seq>acgacccctttttatcgcttagctcttctcccctctccctctaaaacccccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactacaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagtgggtaaaattagcacagacagtttaagcatgcaggtcatagccacaacatcagatgattgggtaaatctgcaagagatggatagtgacaaggaaggagatacacagctcacatcatggaaagataatttggggttgaaaatcaattttgatgactctgctatgcccagtgcctgtttgctcctgtactgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62095" stop="66524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62394" g_stop="62436" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="0.84"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="97" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="66224" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="743" r_length="646" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E698950" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62394" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="66224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATG-CCAGTGCCTGTTTGCTCCTGTACTGGGACT</genome_strand>
        <mrna_strand>ACGACCCCTTTTTATCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTACAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCCAGTGCCTGTTTGCTCCTGTACTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276104" ref_strand="+" ref_description="SGN-E276104 [cLEN-12-L21]">
      <seq>ttttctcgcttagctcttctcccctctccctctaaaacggccacattcaagatgggtttttagcatctgctttccccccttaatgatggaccacaataactttactataaagacttacatggccatcatggctgagagggatgctgccatccgtgaacggaatatggcactagaggagagaaagagagcttttgcagagcgagacatggcaatgcttcagagagatgcagcacttgcagagcgtaatgctttgattcaagagaggaacgatgccattgctgctcttcgattgcaggacagctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagtgggtaaaattagcacagacagtttaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="62103" stop="66362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62403" g_stop="62436" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65145" g_stop="65198" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="88" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65580" g_stop="66062" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="571" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E276104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62403" e_stop="62436"/>
          <exon e_start="65145" e_stop="65198"/>
          <exon e_start="65580" e_stop="66062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTAGTAAGCTTCCTTCCAATGGCGTTCTCAATTTCATGTTTTCGTTGTTTGATCTCTTCTATTTTGCTACTTCATTTCGCTAATCCGAACTGCATATTTGTGTTTTCTTTTACTTATTCGCTTATGACTTGTAAAAACCCCAGCTTTCGATCTTATTGTGTGTATAACATTTGATCTATGTTGTTTTAGCTTGTGTGCATCCCTAAGAAGTGACTTGTAGAAAGTGTTCTTTTTCTCAAAATGTAGATTTAAGAGGTCAAATTCGATTAGATTTACACTTTGTACATATCAATATATGATGAACTTTCTAGGTTCGAAATGATCTAATTGCTTTCACTGCTTGTTGAACCTTAGTGTATGCTAGATGTTGCTTGAGGAGAATGATGTAATAAATGAAAATGAAGCGCACATAGTTAAATTTGATAAAATGAGGAATGATATGCAATAAGAAGATGCTTAAGTAAGTATAGAGACAAGTTCTATAGAACGCTAAGAACAATAATGTTATACGAAAGTAAATATTGGGCAGTAAGGCTATCACGACTGTCACAAAATTGTAAGATGGATGTGTAAATATGAGGTATTGGACAAGTTCCATATTGTGAGGGTGCAAGTGTTAGACGTGGAAGATGTAATAAGAGAAGGTCGCCTAAGATGATTTGACCATGTTCAACTTAAACCTTCACGGATACATTGGAAGGTGTGATAAGTGATGAGTTAGACCTAAAATTAATTGACGAGGTGTGGTAAGTGACGAGGGAGACCTATAATGTGTCAGATTCAATGTGTATTAAGCTAAGGACAGAACACAATTGAAAGAAAGGGGATTCATATAGGTAATCCTGATCAGGTGGGATAAAGGCTTACTTATTGGTGTCATTCTTACCTTACTTTTAGATTAAAGGGATTCATATAAAGAATATTGTGTTTATAAGCAAGGTTGTAGTGGAATGATTTAGTGCCTAATAAACTGGAGGTGGTCATAAAGTATTCAACATGTATCATATGATGGAACTTTGGGAGTGAGTGATAGAACATAGACTTTCACAAGGTGTTAGAAAACCAATTTGGGTTTATGCTTTGTACAGCTACATCATATGCTGTATATTTGCTAAGAAGAATGATGAAAATTTATTTGGAGAGGAAGAATGATCTTTCACCTGATGTTTGTTTATCCAGAAATAGAGTATGTAATTAAAATTTCAAGCAAGTCTTTGCTCAATGTGTTGGTGGGCATTGGCGAATTTAAGGATTCTTACCAGATGTAAATAACATAGGAGGATATATAGGAATTTTTTGCAACTTACTGCAATTAGTTTACGATTGATTATTACTAATGTTGGTTATAGAGGATAATGTAGCCTAACTCAACTTTGTTGAATGAAGCATAATTGCTTATTCCCTAAGTTGCTCGGACTCTTCACTTTCGGTGCCGCACATGTGTCGACACGATGTGGGTGTGGAATTCTTACCCGATTTGGTCAGCCTGTTTTGGGTATTTTGACCAAATTCGAGGGAGAAATTTTGGACAAATTCAATGATTTGTGTAATCAAACAAAAACTAATGTGAAATTGAAGAAAATGGAATACCCTATATATATAAGTTTCCATTTTCACTCCCTTACCTTTTATCTCCTTCAAGGATTCTCCTCAAGTTTTCCATATTATATCTCATATTTATGCTTTATAACTCTATTTTTAGATATTTGAATGGAACTTAACTGAATCCCGACACCCGTATCCATATCCCCGAATTTTAGAATTTGGATTATAGAGGATCCGACCTCTAGATCTGCACCTGTATCGTACACCCGCACCAGAGTTCGAGCAACTTAACTTATTACTATATCTACAACTTGTGACTTTATATTATTAATAATCCGTGAGTGATATGGTCATACTAGAAAACCATACTAGTCCCGTTTGTCCTTTTTACATAGTTAGAGTTGTAAAAAGAGAGAAAACTACCTTTGGTTTGGGGAAACTTGTCTTTGCTTCCTTTGCATAAAATTCAATAAACTTGTGTCGATCTCATAATTTGTGGGGGTCAAATATATATATACTATGTATCCATTCTACTCCATTCAAGTCTATTTCATTCAGATAATATATGATTTACCCTCGGCAGTTTGTTGAACCTTGTCACGGGTAAAAGCTTGGTATTTATGTGGACAAGAGTAGAGAGGCGGACCCATCATATACCGAGTTTCAATTTGTGCACCATTTTAACTTCACTGCCCTCATGGATTTCTTGGTTGTAAAAATATTGATTTGCTTTTTTAAGAAAAATTATCAGTTCTAAAAATTTCAACTTTTAATACACTACTAACGAACTTAATCTCAATTTGAATCAATCTTTTGTTTTCATTTTTGTTCTATCCCTAGCTAAGTTGCCTGTAGAGTTGGGAGTTGGAGTTTGTCGGTACTTCCTTACGAATTCAGAGATGGTAAAAGAAAGGAACTTCTATTTGTGTGGAAACCTGTGTTTGCTTCCTTTATCTTGGCATATGGACGGACTTAATCATGAGAAATATTAGATAGAATAGATGGAGATAAGATAAAGTCCCTGTCTCCGGGAAAGCTTGAATGAAAACAATAAGTATTTAGGGTCTGTGACTGATAATCATTCATCTAGCACTTTGATTGCTTTGAGATCATTAGATCATGCTTTTAGATCACTACATAAAGTATTTTCTTCTGTGTTTCTGCAGAAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATGGTATGATGATGTACTTATATCTTTGCTTTTGCATTTTTCTGTATCAGAAGTATCTTGTTCAGTAAAGGTGGCTTGCTTTCACTAGAAATAGAAAAATTTGCAAGTTCTTTTGCTTAAGGAACTATAAATTCTAATTATTTTAGCAGTGATCGTCAGTTATGCATTTGAAAACTTAGACTGGGTTTCATTTACTGCACATTAATGAGACCTGACGGAAACTATTCTGTATAAGCACCAAAAAGATAACTTGTAGAATTTACTCATGGATAATCGTTACGTCAATTAACTGGCAACTAAATTAATTTTTCTGAACAAGCTACTGCATTAATCATTAATTGATTTGATTTTGTATGTGCTTAATAATTCTCTTTTTTAATAAAGGACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATG</genome_strand>
        <mrna_strand>TTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241690" ref_strand="+" ref_description="SGN-E241690 [cLED-36-B23]">
      <seq>agctctacaaatgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccgcagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagtgggtaaaattagcacagacagtttaagcatgcaggtcatagccacaacatcagatgatcgggtaaatctgcaagagatggatagtgacaaggaaggagatacacagctcacatcatggaaagataatttggggttgaaaatcaattgtgatgactctgctatgccagtgcctgtttgctcctgtactgggactccacagccatgctataaatggggtcatggtgggtggcagtcagcttgctgcacaactaccatatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="65490" stop="66593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65790" g_stop="66292" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E241690" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65790" e_stop="66292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTAT</genome_strand>
        <mrna_strand>AGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATCGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTGTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235426" ref_strand="+" ref_description="SGN-E235426 [cLED-11-A1]">
      <seq>atgacaacaatatggttccagattcaccaggaaatggaactgaaagtggtgcaaagcacatttataaccaacagcaaatgtatagaaccacagctgatgctgctcatggttcaacggaagatcccggagctggctacttgaaagacacagatacttctgaagcaaagattcctaaaaaggtcaagcgacctaaagagagcagacacaataagcaagctaagattccaagagggggtaaaattagcccagacagtttaagcatgcatgtcatagccacaacatcagatgattgggtaaatctgcaagagatggattgtgacaaggaaggagatacacagctcacattatggaaagataatttggggttgaaaatcaattttgatgactctgctatgccagtgccttgttgctcctgtactgggactgcacagccatgctataaatggggtcatggtgggtggcagtcagctagctgcacaactaccatatctatgtatccattacctcagatatcaaacaaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="65500" stop="66624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65800" g_stop="66324" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E235426" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65800" e_stop="66324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCT</genome_strand>
        <mrna_strand>ATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGGAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGGGGGTAAAATTAGCCCAGACAGTTTAAGCATGCATGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATTGTGACAAGGAAGGAGATACACAGCTCACATTATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTTGTTGCTCCTGTACTGGGACTGCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTAGCTGCACAACTACCATATCTATGTATCCATTACCTCAGATATCAAACAAACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712100" ref_strand="+" ref_description="SGN-E712100 [FB03DF01]">
      <seq>gtttaagcattagccacaacatcagatgattgggtaaatctgcaagagatggatagtgacaaggaaggagatacacagctcacatcatggaaagataatttggggttgaaaatcaattttgatgactctgctatgccagtgcctgtttgctcctgtactgggactccacagccatgctataaatggggtcatggtgggtggcagtcagcttgctgcacaactaccatatctatgtatccattacctcaaatatcaaacaaacgctattcccgtgtgggtggaagaaagatgagtggtggtgccttcagtaaattgcttaatcgtcttgctgctcaaggttatgacctgtctattccacttgacctgaaggatcattgggctaaacatggcacaaaccgctacagcacattgaaatagcttctgtgtgcatgttggattgggacctcacaatatagagaaggcattgtcggaaaatgtgtgttgtggatgaaagaaagtgtactttaatactgtgcaggagatataccactaatagctattcattcacattttttgagctctgtctctgtctcagagttccaattcatctttatcagaacggccacatatcatgtactgtacttttgctttcttcaatgtacgtttaatgaatatggtgatttgggtgtcaaaaannnaaaaaaaaaaaaaaaaaccccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="65764" stop="67033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66060" g_stop="66730" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="695"/>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E712100" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66060" e_stop="66730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCAC</genome_strand>
        <mrna_strand>GTTTAAGCATTAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319964" ref_strand="+" ref_description="SGN-E319964 [cTOB-31-K17]">
      <seq>agccatgctataaatggggtcatggtgggtggcagtcagcttgctgcacaactaccatatctatgtatccattacctcaaatatcaaacaaacgctattcccgtgtgggtggaagaaagatgagtggtggtgccttcagtaaattgcttaatcgtcttgctgctcaaggttatgacctgtctattccacttgacctgaaggatcattgggctaaacatggcacaaaccgctacagcacattgaaatagcttctgtgtgcatgttggattgggacctcacaatatagagaaggcattgtcggaaaatgtgtgttgtggatgaaagaaagtgtactttaatactgtgcaggagatataccactaatagctattcattcacattttttgagctctgtctctgtctcagagttccaattcatctttatcagaacggccacatatcatgtactgtacttttgctttcttcaatgtacgtttaatgaatatggtgatttgggtgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="65929" stop="67033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66229" g_stop="66729" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66730" i_stop="66824" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66825" g_stop="66833" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="510" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E319964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66229" e_stop="66729"/>
          <exon e_start="66825" e_stop="66833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCACATAGCTTTGGCTAGACAGCGTAAATAGCAATTTGTGTATATCATTTGTTTCCTCACATTACCATAGCAAACTTCATTTATTGCTTCATCTACAGAAAAAAAAA</genome_strand>
        <mrna_strand>AGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCA...............................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344242" ref_strand="+" ref_description="SGN-E344242 [cTOF-16-P18]">
      <seq>agcttccgagaaaacgacaggttacaggggaagctttaaccgttacaaaattcgttcttcctccggcgaaaagattttactcttactactaggagaagtccatcccagtctattcatcgggctttagcacgcaagtcgcttctgtacccgttcaatgggtgcttccgaatcagttctctccggctcacaagggccaatcgatgagatcaccacagtttctgagcgtgtagaaggcgttgatcctattttggataggctaaaatctctcaaaattgcttctccaatactgaaatcgccaccagctgagagtagcttgactgacattctggtgaggaaagcatcctccacttcaaataaaggctgcgtagatccaaaagttctacttgagctcttctctgtatatcgtcagtggcaagaggagaaggcccagaagatctgtaaaagacaggaagaaatagaaaacaaaatagaagttgcagatgcattggctgttaagcttcttcaacgcttcaattactctgtttccgcaatgaaaacaacctcacagcatctgtcagaagtacatggtttgcaggttgaacttggagtgttgaaaggcaggttgacagaggtaatcagtaattgtgatgcattgtgcaagaggattgatgcagagggaccagaatcgctgcgatcatctatcaaaccatttacaatagcttcctcggacacagaaagcaacagcagcagcatgcatactctgncaggtaaagcagatgaaaagcaatagtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="66792" stop="73716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67092" g_stop="67281" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67282" i_stop="67373" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67374" g_stop="67457" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="274" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67458" i_stop="67543" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67544" g_stop="67628" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="359" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67629" i_stop="71688" i_length="4060">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71689" g_stop="71777" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="448" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71778" i_stop="72903" i_length="1126">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72904" g_stop="73015" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="560" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73016" i_stop="73203" i_length="188">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73204" g_stop="73416" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="773" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E344242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67092" e_stop="67281"/>
          <exon e_start="67374" e_stop="67457"/>
          <exon e_start="67544" e_stop="67628"/>
          <exon e_start="71689" e_stop="71777"/>
          <exon e_start="72904" e_stop="73015"/>
          <exon e_start="73204" e_stop="73416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCGAGAAAACGACAGGTTACAGGGGAAGCTTTAACCGTTACAAAATTCGTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAAGTAATTCTTCTTCTGCTTCATTTTCTATGAATTTCAGTTTTAATTGTTCGCCTTTTTGTCTTTCATAATTTTGAATTTTCTCATGAATGAAGGGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATTGTAAGTTTCACTTTTCGCTAACTTCGGTGTATTGCTTTTGAATAGCTATTAATCCATTACTTATTGCGTGAAATTTGAATGACAAGGCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAGGTAATTTTTCAATATGATAGCAGTTTCCAATACCTTCTGGAAATGGCGTATGCTGTATTGAACATTTTTGAACTTAGGATTGTGTGTTAACCTTGAAAAAATCTTTTTTAAACTTGTTTCAAGTAATTTATTGTCTAGACATACATAAATATCAATTTAGGTTAACTGGTTTTTTTTGCTCCTTAGGAGGAAACGTTTTGAGGATTCAATTCTAGATCAGACCTTGTTATTTTCATAAGCAATAGGTGCATATAAAACAATTATTATAAAAATTAGAATAGATTCTTCGTCAAGGATTCAAACTTGGGGAAAATGCTGCAGCATACAGGCGCTGAACCAACAAGCCGTGGAGCTACTTGCGTTAAGTAGTGTCACTTATAAAATTCTAAAAGTATTTTAAATTCTTCAGATAATATACATATATATTATTATTAAAAAATTTGACGAAGGGTGTAGGATCTACACCCCTTGTCTTAAGGTGCATCCGCCCCACCCTCCTGGACAGGTTTGTAGGGAATATGAGAGAAAATTAAAGAGATGATATCACTTGCAAGTTTTGAGAATACGCGTGCCTTTTAATATTTGAAACGTGGTGATGCAAGCGGACTGTGGTGCTGTTACTTGGACATAGAAAGTACTTTCGAGTTCTTCAAATGGACAGTGAATCAAGAATATATCAAGCTTTTTCAAAAAAGGAAAAAGGAAGTAGAGAGAGTCAGTAACAGTTCATCCTACAAATTACATTGAGCATAGATCCAAGCTGATGGATTCTTTCAGGCTTGTAACGTCTCTAAGTTTATGCCTTATTGCTTCTTCAAAGTTTCACGGTGTGACTACTAAGTTCAATACCACAACAATCCACATCTTTGAATATATCCTCTATTGGCATATATCGAGTTAAGTTACTCTTTGTTTAATGTAACATTAAGTAACTTGGTTAGACATTTTAACCTTTTACAAACTTGTGTTGGGATACTATTTGGACCACATGCTTCTCTATTCGTTTTATTCTTTATGGCATCCTTTACTTCAGAATACAGAATTTATGTGCTTCAGCTTCTAAGTCTTATGCTTCTGTAGTTTCGTTTCATATCCAGGTCCACAATGTATGTTCAGTATCTTCCTAGAACTTAGTGTCATTTTCTTTGTTTATTAACATAGCAATATCATGTTAATTTTCTCTTTTCCCACACTATCCTAATGAGTTAATAATCATGTCGCCAATTCTCTTCAAGGGTGGTTTGCAAACTTCTTTACCCTCATCGTTCCAGGAAGATGTTGGAGCTCTTTCCTATCTAACTTCACATCTGGGTGCCAATGTATGGGGTGAATACCTTAGTCACGTCATCCGTGATGTGAGAACCCTTGGTTATGCTCTCTCATTCCCTGGATGCAACATGGTGGAACTTCTTGGTTAAATTAAAGTTGCACCCCTGCGTCGATGTAGCATGTTCCAAGAAGACCATGACCAATATAGTTAATATGAGGATTCATTATAAATTTAACTATTTTTTAAATGGCCATCGACTATTGCAATGTTCTCCTTTCTACAGGATTGGATTGATTGTGCTCAGTGAGCATAGGTGGAGTTATGATGAATCCTAATGATAACCATTTCCCTAGAGTTTCAAACCTACACTAATGAACCGTGATTTCTTGTGCAAATATTTAAGAAGTGCTTGAAACTTGAACTAGCCTCCATTCACCATGATAGTTGGTTTGTTTTAATTAAACTGAAGAAAACTAAACCAAAAAATGGGTTGTGGCTCAATTAGGAATTAAAAAGAAACTGAGAACATTGATGATCTGATCCGAGAGATGAAAATGCTAAGCAGCTTAGAGCTCAGTTGGCTGCTGCTTCCGAATCTTTTCTTCTGAGAAACCTGTATTACTTCTCAATTTGACTGCTACAGGGGCCGCTTAACAAAGTTGATGGCCTAAACAAGAATTTTGTAGAAGGCCTTATGGTTTTTTCAGATGTTGTTCATATATATTTTTTAAGTCTATTTTTCTAAAGTTTTTTAGATGCAAAGTTGTTAACATTTCTCCAAATCAGTTTGTTCTAAAAAAAGTTCAAGTGATGATATCGCTAATCAATATTTGACTGTGGATGAATGAGTAACACCTACGACAACAACTGCTAATTCTCGTAGGCTGAGAAGTAAATGAGTAATCCGCTTGGGGAAGGGGGGTCGCGTCTGATTAGCTAGTTGGCGAAGCAATAGCTTACCAAGGCGATGAGCAGCCACACTGAAACTGAGATGCGGGCCCAACCTCCCACGGGAAGTAGCAGTGGGGATCTCTCTATTGACATCTTAGAGTGTCCATTCCTTGCAAGCAACATAAGCCCAAGCCCCTTTTTCGTTCTCTTCAGACAAGCAACTTTTCTTCTTTTGCCCTCTCTTGCCGTAGAGTACCCAATGATTGTTTAAAATAGAACAGAGATAAAGGATCCCAGAACAAGTAAACACCTTTAGTTGTCTTAATAACTGGATCAGATTGAAGAATCTGATTTTAAACGAGGCTAACAAAATAGGAGGGAAAACCACTCAATAAATGAAATTGCTGAAGGATTTTCCTTGAATTTTTTGAAAGTTATCCAACTTGGTTTCTTTCTATATAGTGTAAATAACTAAATATATGACACCTGGGCCTAACTCAACCCCAAAAGCTAGCTCATGAGGGGAGGAGAGGTTTGTTTGTCCAAGTCCATATAAAGAGACTAATTTCTCCTCCATCTATCGATGTGGGACTCTTAACACTCCCCGCACGCCCAGACCTTAACTAGAGCATGAACACTTATAAATGGGGGCCCAACATCGATGAACAACAAATTGAGATAGGTCTGGCGTTGATACCAAATATGACACCTAAGCTTAGCTCAACTCCAAAAGCTAGCTCATGAGGAGAGGTTTGTCCAAGTCCATATAAGGCGACCAATTTCCCATTCCTCTATCGATGTGGGACTTCTTACCTTATAGAATAGAAAACTATTGACACATCTGATGGAAACGAAATCGGTCAATAGTAAGATAGTCACACTACTTCATTTTTTAAAAATAATAAATCAAAAAAAATGAAAGTCAAATACTCTTCTTCACATTCTACATAAAATACACTTTTTCTTCGAGAATGTTTGGAATCCCACTCATAATACTTTCATTTAGTTTCTAGATATGTAAATTTTATTTGAATAAATTGAAGATTCTATATCCAAATTTATATTGAACATTAATTAGTTTGATCCTCATACTCCGAATAAAGCCACATAAATAAAATCACGGGGAGTAAATTTTTTTATTTTTTTTAAATAGCTACAAAACCTACTATATATAAAGAAAAGAAGGGGAGGGGGGGGGGCTTGAGTTGGCGAAGTGACCTAATCATACAAACTGTAGCCTACCAACATCAGATGGCGCACCAGAATCCCGTACTGGAAGTCCTTGAAGGGGACATGGGTAGGAGCTTCAAAGATGGTAAGTGGAGATCTACTAGCTTCCCTCTTAATCTCAAATATAACCAATGAATTACAACTGAAGCTTCACTTGAATCGTAATTGCCCAAAAATGGAGTATTCTTTAGATCCGATCTAGGGCGAAACTTTTGAGATTGTGAATGAGATTATATACATGTATGTTTTGATTGAATTAGCTCCAAGAATAAAATACAGTAAATTTTGGAGATCGTGAATGAGATTAGATATTCATATGTTCTGATCAAACTAGCTCCTTTTTAATGAGTCTAATCCGCCTTTATACAATTCTGAATGACTCAAGTTGTTTGTAGTATGTAAAAGCCACACAACTAATCATTATAATCACACCCACAAGGGTGAGTACGTTTAACTTATCAGAAGAAAAACAGATACCAAAAATGCTTTTAATGAAATAATTTAAAAACATTCATTGCAGCAGTTATAGCATTGACCAGCATTTTCTCTGATCTCTGTTGGGATATATGTAGCATTTGTTAAACAATTGTCATCAAGAATAAGTAGGGGGATTTTTTTCTCTTATCCTGCTGGGTAAAATATTGATACTGCTTTCTTTTGTTATTGTAGGCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAGGTTTGCTCAATCATTAGCATGTTCTTCTGGTCACCTAATGCTTCAGTAGCCATTTTCCAGTGTGGTAGTGGTTCCATCCATAGAAAGTGTGGATCTAGAACAGGCTAAAATGTATGTTTGTATATGTTTGAGTTAGACTGTATGTAATTACACAAACCATTCTATTCTAAATGCATTCACTAGTCTCAAAACATGGTCGCTTGTGAGTCATTTCTTATTAACACACACACCCTCACACACAGAGGGGTGGGAGAAAGGAAATTATGAGTATCCTTTGAGTCAAAGCTGTGGTCTGAATTTGTATGGAATTCTTGCAAGTAAATTAAGGTCAAATTGTTCAGATAACTACTGTTAGCCGTTTTTTGCCAGCAATGAGGTGGATTATCGCCCCAATCCCTCCCAAAGGAAGTAGAACATAGTCATTTTGTTCACCATAGAAGTTGCATACAGGCTCAAAGTTGTTTAGTAGTTATTTGATCCTTATTATGTTTACTATGTAGAAGTGGCTGACTAGATTGATTTGGGTTCTCTAAAACTTGATCCCAATTTAATGTGTAAAGGAGCAGCTGCCTCAAAAAAAAATCTATCTGATGACTAGATATTCCCCAACTTTTCAGGCATATATATTTTCTGAAGTTAGTTGCTAAAATTAAATGCCCTCTAGATCAGTGGTAGACAATATCCTTTTGAATCAACAATTGCACATCAATCATCACCACACTGACCTTTCGAAGGGTGGGAAAAGATTTTACAAGGTTTATTTTTGTGTTTGATTGTAGCTACACCATTATTTCTCCCATCATACGTTGGTCGAGAATTGTCTTGCCACATCCCATAGTATGGCTTGTACTATGCAGATGGTTGTATACCATTTATAAAGTATGCTTCCCTGTGACTAGAGTTTAAAGTTAATAGTCAATTAGGTGGTGGTTTTTTCGACACTAGGATTTTGAAGCTCTGTTCAGTACATTAAGTACTATGTTCAAGGTGTTAGCGTACCTATGCTAGCATGTTGAAGCTCTTCATCATGTTTACAAGCTTGTGTTGTTTGTTGTGGTTTTTCTTCATGTAAAAAGAAGAGCTCATATATCTTTTTAAAAGTAGATTTCTTGGATAATTGCTGCAGGAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAGGTATTATAATAGCCAATCTCGGAAAGCAGAAGAGTAAAAAAATGTCTGTCGAGATAACTAGGGCTACTGTAGTGTGGAGCTTCAGAACAAAGTTAAATGTTTGTCCTTGTGATATCTGATTCCCATTATTCAAAAATGTAGCACGCTAATGCTGTTTTTTTTTGACTCAATGTTTGAATTGCACGCAGTACATGGTTTGCAGGTTGAACTTGGAGTGTTGAAAGGCAGGTTGACAGAGGTAATCAGTAATTGTGATGCATTGTGCAAGAGGATTGATGCAGAGGGACCAGAATCGCTGCGATCATCTATCAAACCATTTACAATAGCTTCCTCGGACACAGAAAGCAACAGCAGCAGCATGCATACTCTGCAAGGTAAAGCAGATGAAAAGCAATAGTGCC</genome_strand>
        <mrna_strand>AGCTTCCGAGAAAACGACAGGTTACAGGGGAAGCTTTAACCGTTACAAAATTCGTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAA............................................................................................GGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATT......................................................................................GCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAG............................................................................................................................................................................................TACATGGTTTGCAGGTTGAACTTGGAGTGTTGAAAGGCAGGTTGACAGAGGTAATCAGTAATTGTGATGCATTGTGCAAGAGGATTGATGCAGAGGGACCAGAATCGCTGCGATCATCTATCAAACCATTTACAATAGCTTCCTCGGACACAGAAAGCAACAGCAGCAGCATGCATACTCTGNCAGGTAAAGCAGATGAAAAGCAATAGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698945" ref_strand="+" ref_description="SGN-E698945 [FA08AD01]">
      <seq>ggacgaggccattagaagtccatcccagtctattcatcgggctttagcacgcaagtcgcttctgtacccgttcaatgggtgcttccgaatcagttctctccggctcacaagggccaatcgatgagatcaccacagtttctgagcgtgtagaaggcgttgatcctattttggataggctaaaatctctcaaaattgcttctccaatactgaaatcgccaccagctgagagtagcttgactgacattctggtgaggaaagcatcctccacttcaaataaaggctgcgtagatccaaaagttctacttgagctcttctctgtatatcgtcagtggcaagaggagaaggcccagaagatctgtaaaagacaggaagaaatagaaaacaaaatagaagttgcagatgcattggctgttaagcttcttcaacgcttcaattactctgtttccgcaatgaaaacaacctcacagcatctgtcagaagtacatggtttgcaggttgaacttggagtgttgaaaggcaggttgacagaggtaatcagtaattgtgatgcattgtgcaagaggattgatgcagagggaccagaatcgctgcgatcatctatcaaaccatttacaatagcttcctcggacacagaaagcaacagcagcagcatgcatactctgcaaggtaaagcagatgaaaagcaatagtgccgaggcctctctttggagcttataaaatgtctctatacccccgggtgtacattacttgtttgagaattaacgacccatacttgtatctagccctacctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="66880" stop="73816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67187" g_stop="67281" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="110" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67282" i_stop="67373" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67374" g_stop="67457" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="194" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67458" i_stop="67543" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67544" g_stop="67628" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="279" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67629" i_stop="71688" i_length="4060">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71689" g_stop="71777" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="368" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71778" i_stop="72903" i_length="1126">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72904" g_stop="73015" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="480" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73016" i_stop="73203" i_length="188">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73204" g_stop="73516" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="794" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E698945" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67187" e_stop="67281"/>
          <exon e_start="67374" e_stop="67457"/>
          <exon e_start="67544" e_stop="67628"/>
          <exon e_start="71689" e_stop="71777"/>
          <exon e_start="72904" e_stop="73015"/>
          <exon e_start="73204" e_stop="73516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAAGTAATTCTTCTTCTGCTTCATTTTCTATGAATTTCAGTTTTAATTGTTCGCCTTTTTGTCTTTCATAATTTTGAATTTTCTCATGAATGAAGGGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATTGTAAGTTTCACTTTTCGCTAACTTCGGTGTATTGCTTTTGAATAGCTATTAATCCATTACTTATTGCGTGAAATTTGAATGACAAGGCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAGGTAATTTTTCAATATGATAGCAGTTTCCAATACCTTCTGGAAATGGCGTATGCTGTATTGAACATTTTTGAACTTAGGATTGTGTGTTAACCTTGAAAAAATCTTTTTTAAACTTGTTTCAAGTAATTTATTGTCTAGACATACATAAATATCAATTTAGGTTAACTGGTTTTTTTTGCTCCTTAGGAGGAAACGTTTTGAGGATTCAATTCTAGATCAGACCTTGTTATTTTCATAAGCAATAGGTGCATATAAAACAATTATTATAAAAATTAGAATAGATTCTTCGTCAAGGATTCAAACTTGGGGAAAATGCTGCAGCATACAGGCGCTGAACCAACAAGCCGTGGAGCTACTTGCGTTAAGTAGTGTCACTTATAAAATTCTAAAAGTATTTTAAATTCTTCAGATAATATACATATATATTATTATTAAAAAATTTGACGAAGGGTGTAGGATCTACACCCCTTGTCTTAAGGTGCATCCGCCCCACCCTCCTGGACAGGTTTGTAGGGAATATGAGAGAAAATTAAAGAGATGATATCACTTGCAAGTTTTGAGAATACGCGTGCCTTTTAATATTTGAAACGTGGTGATGCAAGCGGACTGTGGTGCTGTTACTTGGACATAGAAAGTACTTTCGAGTTCTTCAAATGGACAGTGAATCAAGAATATATCAAGCTTTTTCAAAAAAGGAAAAAGGAAGTAGAGAGAGTCAGTAACAGTTCATCCTACAAATTACATTGAGCATAGATCCAAGCTGATGGATTCTTTCAGGCTTGTAACGTCTCTAAGTTTATGCCTTATTGCTTCTTCAAAGTTTCACGGTGTGACTACTAAGTTCAATACCACAACAATCCACATCTTTGAATATATCCTCTATTGGCATATATCGAGTTAAGTTACTCTTTGTTTAATGTAACATTAAGTAACTTGGTTAGACATTTTAACCTTTTACAAACTTGTGTTGGGATACTATTTGGACCACATGCTTCTCTATTCGTTTTATTCTTTATGGCATCCTTTACTTCAGAATACAGAATTTATGTGCTTCAGCTTCTAAGTCTTATGCTTCTGTAGTTTCGTTTCATATCCAGGTCCACAATGTATGTTCAGTATCTTCCTAGAACTTAGTGTCATTTTCTTTGTTTATTAACATAGCAATATCATGTTAATTTTCTCTTTTCCCACACTATCCTAATGAGTTAATAATCATGTCGCCAATTCTCTTCAAGGGTGGTTTGCAAACTTCTTTACCCTCATCGTTCCAGGAAGATGTTGGAGCTCTTTCCTATCTAACTTCACATCTGGGTGCCAATGTATGGGGTGAATACCTTAGTCACGTCATCCGTGATGTGAGAACCCTTGGTTATGCTCTCTCATTCCCTGGATGCAACATGGTGGAACTTCTTGGTTAAATTAAAGTTGCACCCCTGCGTCGATGTAGCATGTTCCAAGAAGACCATGACCAATATAGTTAATATGAGGATTCATTATAAATTTAACTATTTTTTAAATGGCCATCGACTATTGCAATGTTCTCCTTTCTACAGGATTGGATTGATTGTGCTCAGTGAGCATAGGTGGAGTTATGATGAATCCTAATGATAACCATTTCCCTAGAGTTTCAAACCTACACTAATGAACCGTGATTTCTTGTGCAAATATTTAAGAAGTGCTTGAAACTTGAACTAGCCTCCATTCACCATGATAGTTGGTTTGTTTTAATTAAACTGAAGAAAACTAAACCAAAAAATGGGTTGTGGCTCAATTAGGAATTAAAAAGAAACTGAGAACATTGATGATCTGATCCGAGAGATGAAAATGCTAAGCAGCTTAGAGCTCAGTTGGCTGCTGCTTCCGAATCTTTTCTTCTGAGAAACCTGTATTACTTCTCAATTTGACTGCTACAGGGGCCGCTTAACAAAGTTGATGGCCTAAACAAGAATTTTGTAGAAGGCCTTATGGTTTTTTCAGATGTTGTTCATATATATTTTTTAAGTCTATTTTTCTAAAGTTTTTTAGATGCAAAGTTGTTAACATTTCTCCAAATCAGTTTGTTCTAAAAAAAGTTCAAGTGATGATATCGCTAATCAATATTTGACTGTGGATGAATGAGTAACACCTACGACAACAACTGCTAATTCTCGTAGGCTGAGAAGTAAATGAGTAATCCGCTTGGGGAAGGGGGGTCGCGTCTGATTAGCTAGTTGGCGAAGCAATAGCTTACCAAGGCGATGAGCAGCCACACTGAAACTGAGATGCGGGCCCAACCTCCCACGGGAAGTAGCAGTGGGGATCTCTCTATTGACATCTTAGAGTGTCCATTCCTTGCAAGCAACATAAGCCCAAGCCCCTTTTTCGTTCTCTTCAGACAAGCAACTTTTCTTCTTTTGCCCTCTCTTGCCGTAGAGTACCCAATGATTGTTTAAAATAGAACAGAGATAAAGGATCCCAGAACAAGTAAACACCTTTAGTTGTCTTAATAACTGGATCAGATTGAAGAATCTGATTTTAAACGAGGCTAACAAAATAGGAGGGAAAACCACTCAATAAATGAAATTGCTGAAGGATTTTCCTTGAATTTTTTGAAAGTTATCCAACTTGGTTTCTTTCTATATAGTGTAAATAACTAAATATATGACACCTGGGCCTAACTCAACCCCAAAAGCTAGCTCATGAGGGGAGGAGAGGTTTGTTTGTCCAAGTCCATATAAAGAGACTAATTTCTCCTCCATCTATCGATGTGGGACTCTTAACACTCCCCGCACGCCCAGACCTTAACTAGAGCATGAACACTTATAAATGGGGGCCCAACATCGATGAACAACAAATTGAGATAGGTCTGGCGTTGATACCAAATATGACACCTAAGCTTAGCTCAACTCCAAAAGCTAGCTCATGAGGAGAGGTTTGTCCAAGTCCATATAAGGCGACCAATTTCCCATTCCTCTATCGATGTGGGACTTCTTACCTTATAGAATAGAAAACTATTGACACATCTGATGGAAACGAAATCGGTCAATAGTAAGATAGTCACACTACTTCATTTTTTAAAAATAATAAATCAAAAAAAATGAAAGTCAAATACTCTTCTTCACATTCTACATAAAATACACTTTTTCTTCGAGAATGTTTGGAATCCCACTCATAATACTTTCATTTAGTTTCTAGATATGTAAATTTTATTTGAATAAATTGAAGATTCTATATCCAAATTTATATTGAACATTAATTAGTTTGATCCTCATACTCCGAATAAAGCCACATAAATAAAATCACGGGGAGTAAATTTTTTTATTTTTTTTAAATAGCTACAAAACCTACTATATATAAAGAAAAGAAGGGGAGGGGGGGGGGCTTGAGTTGGCGAAGTGACCTAATCATACAAACTGTAGCCTACCAACATCAGATGGCGCACCAGAATCCCGTACTGGAAGTCCTTGAAGGGGACATGGGTAGGAGCTTCAAAGATGGTAAGTGGAGATCTACTAGCTTCCCTCTTAATCTCAAATATAACCAATGAATTACAACTGAAGCTTCACTTGAATCGTAATTGCCCAAAAATGGAGTATTCTTTAGATCCGATCTAGGGCGAAACTTTTGAGATTGTGAATGAGATTATATACATGTATGTTTTGATTGAATTAGCTCCAAGAATAAAATACAGTAAATTTTGGAGATCGTGAATGAGATTAGATATTCATATGTTCTGATCAAACTAGCTCCTTTTTAATGAGTCTAATCCGCCTTTATACAATTCTGAATGACTCAAGTTGTTTGTAGTATGTAAAAGCCACACAACTAATCATTATAATCACACCCACAAGGGTGAGTACGTTTAACTTATCAGAAGAAAAACAGATACCAAAAATGCTTTTAATGAAATAATTTAAAAACATTCATTGCAGCAGTTATAGCATTGACCAGCATTTTCTCTGATCTCTGTTGGGATATATGTAGCATTTGTTAAACAATTGTCATCAAGAATAAGTAGGGGGATTTTTTTCTCTTATCCTGCTGGGTAAAATATTGATACTGCTTTCTTTTGTTATTGTAGGCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAGGTTTGCTCAATCATTAGCATGTTCTTCTGGTCACCTAATGCTTCAGTAGCCATTTTCCAGTGTGGTAGTGGTTCCATCCATAGAAAGTGTGGATCTAGAACAGGCTAAAATGTATGTTTGTATATGTTTGAGTTAGACTGTATGTAATTACACAAACCATTCTATTCTAAATGCATTCACTAGTCTCAAAACATGGTCGCTTGTGAGTCATTTCTTATTAACACACACACCCTCACACACAGAGGGGTGGGAGAAAGGAAATTATGAGTATCCTTTGAGTCAAAGCTGTGGTCTGAATTTGTATGGAATTCTTGCAAGTAAATTAAGGTCAAATTGTTCAGATAACTACTGTTAGCCGTTTTTTGCCAGCAATGAGGTGGATTATCGCCCCAATCCCTCCCAAAGGAAGTAGAACATAGTCATTTTGTTCACCATAGAAGTTGCATACAGGCTCAAAGTTGTTTAGTAGTTATTTGATCCTTATTATGTTTACTATGTAGAAGTGGCTGACTAGATTGATTTGGGTTCTCTAAAACTTGATCCCAATTTAATGTGTAAAGGAGCAGCTGCCTCAAAAAAAAATCTATCTGATGACTAGATATTCCCCAACTTTTCAGGCATATATATTTTCTGAAGTTAGTTGCTAAAATTAAATGCCCTCTAGATCAGTGGTAGACAATATCCTTTTGAATCAACAATTGCACATCAATCATCACCACACTGACCTTTCGAAGGGTGGGAAAAGATTTTACAAGGTTTATTTTTGTGTTTGATTGTAGCTACACCATTATTTCTCCCATCATACGTTGGTCGAGAATTGTCTTGCCACATCCCATAGTATGGCTTGTACTATGCAGATGGTTGTATACCATTTATAAAGTATGCTTCCCTGTGACTAGAGTTTAAAGTTAATAGTCAATTAGGTGGTGGTTTTTTCGACACTAGGATTTTGAAGCTCTGTTCAGTACATTAAGTACTATGTTCAAGGTGTTAGCGTACCTATGCTAGCATGTTGAAGCTCTTCATCATGTTTACAAGCTTGTGTTGTTTGTTGTGGTTTTTCTTCATGTAAAAAGAAGAGCTCATATATCTTTTTAAAAGTAGATTTCTTGGATAATTGCTGCAGGAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAGGTATTATAATAGCCAATCTCGGAAAGCAGAAGAGTAAAAAAATGTCTGTCGAGATAACTAGGGCTACTGTAGTGTGGAGCTTCAGAACAAAGTTAAATGTTTGTCCTTGTGATATCTGATTCCCATTATTCAAAAATGTAGCACGCTAATGCTGTTTTTTTTTGACTCAATGTTTGAATTGCACGCAGTACATGGTTTGCAGGTTGAACTTGGAGTGTTGAAAGGCAGGTTGACAGAGGTAATCAGTAATTGTGATGCATTGTGCAAGAGGATTGATGCAGAGGGACCAGAATCGCTGCGATCATCTATCAAACCATTTACAATAGCTTCCTCGGACACAGAAAGCAACAGCAGCAGCATGCATACTCTGCAAGGTAAAGCAGATGAAAAGCAATAGTGCCGAGGCCTCTCTTTGGAGCTTATAAAATGTCTCTATACCCCCGGGTGTACATTACTTGTTTGAGAATTAACGACCCATACTTGTATCTAGTCCTA-CTGACT</genome_strand>
        <mrna_strand>AAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAA............................................................................................GGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATT......................................................................................GCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAG............................................................................................................................................................................................TACATGGTTTGCAGGTTGAACTTGGAGTGTTGAAAGGCAGGTTGACAGAGGTAATCAGTAATTGTGATGCATTGTGCAAGAGGATTGATGCAGAGGGACCAGAATCGCTGCGATCATCTATCAAACCATTTACAATAGCTTCCTCGGACACAGAAAGCAACAGCAGCAGCATGCATACTCTGCAAGGTAAAGCAGATGAAAAGCAATAGTGCCGAGGCCTCTCTTTGGAGCTTATAAAATGTCTCTATACCCCCGGGTGTACATTACTTGTTTGAGAATTAACGACCCATACTTGTATCTAGCCCTACCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537751" ref_strand="+" ref_description="SGN-E537751 [TUS-56-I6]">
      <seq>gagatattgaacccacgcacgtcgttctgattagcaattttgatgcttttaattcgtaatgtgtcgtcatcttttgataaaaaccagctcaagaatgaggcattcgaacgaaatgttgaattattgaggggtggttgcctccctcctcttgtaaaccctaattctatttttgaagttttgcatttctatgcatcttttatagcttcaaagtttagattcctcccactgatggatatatgtctgtctaaatgtggaaaaaaacatgacaatcacttcttttcaggctggttagtccatttttaggtttcaataacactgttaatatcagttctgtgttccatcttgttgaaaccaagaaggatttttgagggtttaaccctttgaagtgtcattgttgtgtattgtctcttaaggtccattttatgttttatttgggttgattatagccagtgaattatgaattgtaactttaagggaagatcttttttgttcaaacattcaaatgagaggctctgatatctatttttgacgtttctttgttggaaattgttactaatactcattggaggccaaacggacattgtaaggatttgaaggttaaatttctttgagttttagttgttagtattcattaagatagctttcaaacaaatcccctagtctttgttcttgccattgtttacaggatgacnagtgtttgtaccttggaatttgatgattgtacacaatatattggcacaccaggtaattctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="95984" stop="97338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96284" g_stop="97038" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E537751" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96284" e_stop="97038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTTTAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATTGTAAGGATTTGAAGGTTAAATTTCTTTGAGTTTTAGTTGTTAGTATTCATTAAGATAGCTTTCAAACAAATCCCCTAGTCTTTGTTCTTGCCATTGTTTACAGGATGACAAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATATATTGGCACACCAGGTAATTCTGTA</genome_strand>
        <mrna_strand>GAGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTTTAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATTGTAAGGATTTGAAGGTTAAATTTCTTTGAGTTTTAGTTGTTAGTATTCATTAAGATAGCTTTCAAACAAATCCCCTAGTCTTTGTTCTTGCCATTGTTTACAGGATGACNAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATATATTGGCACACCAGGTAATTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266928" ref_strand="+" ref_description="SGN-E266928 [cLEI-7-I10]">
      <seq>agatattgaacccacgcacgtcgttctgattagcaattttgatgcttttaattcgtaatgtgtcgtcatcttttgataaaaaccagctcaagaatgaggcattcgaacgaaatgttgaattattgaggggtggttgcctccctcctcttgtaaaccctaattctatttttgaagttttgcatttctatgcatcttttatagcttcaaagtttagattcctcccactgatggatatatgtctgtctaaatgtggaaaaaaacatgacaatcacttcttttcaggctggttagtccatttttaggtttcaataacactgttaatatcagttctgtgttccatcttgttgaaaccaagaaggatttttgagggtttaaccctttgaagtgtcattgttgtgtattgtctcttaaggtccattttatgttttatttgggttgattatagccagtgaattatgaattgtaactttaagggaagatcttttttgttcaaacattcaaatgagaggctctgatatctatttttgacgtttctttgttggaaattgttactaatactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="95985" stop="97147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96285" g_stop="96847" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E266928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96285" e_stop="96847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTTTAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATT</genome_strand>
        <mrna_strand>AGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTTTAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537749" ref_strand="+" ref_description="SGN-E537749 [TUS-56-I6](-)">
      <seq>ttttctatctctaaaagctaactaatgcttgcagccatgacatgtttctatgcttttgagctgattcatgttttgagatgagtttctttcccatctctcaccggaccacccttttcgtgatattacacatgcacttcctcttttcttgttattattactcactctactttgtttaatacacaatgaggatttggaggttttcatctattgatgttcaatcaaacatgtctcatgtcgaactaagaaactgttgcttggcacggcacttcaggcgggtctgtgagatttgggaaatgttcctttttttggattgcatgcattactcaactaataggctgtttgacggttttgttcattaatatcttactaatatcttttttatagatgttctttatttattattttgtggttttacttgtagttgggagaactggtatgactgtacacaacacanaaacattaatgcttacattttattttggttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0044J01-RL0Cd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0044J01.1" temp_strand="+" temp_description="C02HBa0044J01.1  AC226503.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0044J01 sequenced_by:kribb upload_account_name:korea">
        <position start="97009" stop="98094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97309" g_stop="97794" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97795" i_stop="97873" i_length="79">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97874" g_stop="97885" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="499" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0044J01.1" gen_strand="+" ref_id="SGN-E537749" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0044J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97309" e_stop="97794"/>
          <exon e_start="97874" e_stop="97885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATCTCTAAAAGCTAACTAATGCTTGCAGCCATGACATGTTTCTATGCTTTTGAGCTGATTCATGTTTTGAGATGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTATTATTACTCACTCTACTTTGTTTAATACACAATGAGGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATGTCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTGTGAGATTTGGGAAATGTTCCTTTTTTTGGATTGCATGCATTACTCAACTAATAGGCTGTTTGACGGTTTTGTTCATTAATATCTTACTAATATCTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAGTTGGGAGAACTGGTATGACTGTACACAACACA-AAACATTAATGCTTACATTTTATTTTGGTTTTATTGCAAGATGTTTATGTATATGGCATTCCTGGTACTTCATTTCCTATAAAATACTTCCTTTACCTGTACCGTGTCTAAGAAAAATAGGGAA</genome_strand>
        <mrna_strand>TTTTCTATCTCTAAAAGCTAACTAATGCTTGCAGCCATGACATGTTTCTATGCTTTTGAGCTGATTCATGTTTTGAGATGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTATTATTACTCACTCTACTTTGTTTAATACACAATGAGGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATGTCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTGTGAGATTTGGGAAATGTTCCTTTTTTTGGATTGCATGCATTACTCAACTAATAGGCTGTTTGACGGTTTTGTTCATTAATATCTTACTAATATCTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAGTTGGGAGAACTGGTATGACTGTACACAACACANAAACATTAATGCTTACATTTTATTTTGGTTTTA...............................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>77</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1491" PGL_stop="48"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1491" e_stop="1426"/>
            <exon e_start="803" e_stop="48"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1491" e_stop="1426" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="1425" i_stop="804" i_length="622"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="803" e_stop="48" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1491" stop="1426"/>
              <exon start="803" stop="323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1473" stop="1426"/>
              <exon start="803" stop="48"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="674" stop="172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="418" stop="100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTCTCCACCGGCGCCAACTCTCCACCGGCGACGTACGAATCTCTTTATCGGCCGTAATCGACCG : GTATTAAGGGTAAGCAAGAGAGTAATTTCCGTTCTCTGATAGTGTGTCTTATTTGGGAGTTGGAATCAGTGTAAGTTTTGTGGATTTTTGATGGCTCTGAAGTTTCTGAATAAGAAGGGATGGCACACGGGGAGTCTTCGAAACATTGAAAATGTATGGAAAGCAGAGCAGAAGCATGACGCCGAACAGAGGAAGTTGGAGGAGCTCCGCAAGCAGATCCAGGAAGAGCGTGAGCGCAGTGAATTTCGCCAACTCCAGGAACAAGCTGGCTTGGTTACCAGGCAAGAGAGGCTGGAATTTCTTTATGATTCTGGATTAGCTGTTGGAAAGGGAAGTTCTAGTGGGTTTGAATCTTTGTCCAAGCCGGCTGAACCTGTAACAGCTGCTGTAGCTGCTGCTGATTCCAGTTCTTCTGCCAAACCGCAAGCATCGGTGCCAGGAGCTCTATTTGAGGACAAGTCACAATCTTCCAATGATGCTTGGAGGAAACTCCATTCTGATCCCTTGCTTATGATTCGTCAGCGAGAGCAAGAAGCCCTTGCGCGTGTGAAGAACAACCCTGTCCAGATGGCCATGATTCGTAAATCTGTTGAAACAATGAAAAATAAGGATAAGATGCATGATGAGAAAGAGAAGGATGAACGCAGACATAAACATCGAGACAAGAAATCAAAGCCTCATCATTCGAAGTCAAAGCATTTGAAGAATTCACCTAGACAAACCTCTGATGCAGATGAATACTTGAGTGAAGATGAT</gDNA_template>
            <first_frame> Y  S  P  P  A  P  T  L  H  R  R  R  T  N  L  F  I  G  R  N  R  P  :  V  L  R  V  S  K  R  V  I  S  V  L  *  *  C  V  L  F  G  S  W  N  Q  C  K  F  C  G  F  L  M  A  L  K  F  L  N  K  K  G  W  H  T  G  S  L  R  N  I  E  N  V  W  K  A  E  Q  K  H  D  A  E  Q  R  K  L  E  E  L  R  K  Q  I  Q  E  E  R  E  R  S  E  F  R  Q  L  Q  E  Q  A  G  L  V  T  R  Q  E  R  L  E  F  L  Y  D  S  G  L  A  V  G  K  G  S  S  S  G  F  E  S  L  S  K  P  A  E  P  V  T  A  A  V  A  A  A  D  S  S  S  S  A  K  P  Q  A  S  V  P  G  A  L  F  E  D  K  S  Q  S  S  N  D  A  W  R  K  L  H  S  D  P  L  L  M  I  R  Q  R  E  Q  E  A  L  A  R  V  K  N  N  P  V  Q  M  A  M  I  R  K  S  V  E  T  M  K  N  K  D  K  M  H  D  E  K  E  K  D  E  R  R  H  K  H  R  D  K  K  S  K  P  H  H  S  K  S  K  H  L  K  N  S  P  R  Q  T  S  D  A  D  E  Y  L  S  E  D  D </first_frame>
            <second_frame>  T  L  H  R  R  Q  L  S  T  G  D  V  R  I  S  L  S  A  V  I  D  R :   Y  *  G  *  A  R  E  *  F  P  F  S  D  S  V  S  Y  L  G  V  G  I  S  V  S  F  V  D  F  *  W  L  *  S  F  *  I  R  R  D  G  T  R  G  V  F  E  T  L  K  M  Y  G  K  Q  S  R  S  M  T  P  N  R  G  S  W  R  S  S  A  S  R  S  R  K  S  V  S  A  V  N  F  A  N  S  R  N  K  L  A  W  L  P  G  K  R  G  W  N  F  F  M  I  L  D  *  L  L  E  R  E  V  L  V  G  L  N  L  C  P  S  R  L  N  L  *  Q  L  L  *  L  L  L  I  P  V  L  L  P  N  R  K  H  R  C  Q  E  L  Y  L  R  T  S  H  N  L  P  M  M  L  G  G  N  S  I  L  I  P  C  L  *  F  V  S  E  S  K  K  P  L  R  V  *  R  T  T  L  S  R  W  P  *  F  V  N  L  L  K  Q  *  K  I  R  I  R  C  M  M  R  K  R  R  M  N  A  D  I  N  I  E  T  R  N  Q  S  L  I  I  R  S  Q  S  I  *  R  I  H  L  D  K  P  L  M  Q  M  N  T  *  V  K  M   </second_frame>
            <third_frame>   L  S  T  G  A  N  S  P  P  A  T  Y  E  S  L  Y  R  P  *  S  T   : G  I  K  G  K  Q  E  S  N  F  R  S  L  I  V  C  L  I  W  E  L  E  S  V  *  V  L  W  I  F  D  G  S  E  V  S  E  *  E  G  M  A  H  G  E  S  S  K  H  *  K  C  M  E  S  R  A  E  A  *  R  R  T  E  E  V  G  G  A  P  Q  A  D  P  G  R  A  *  A  Q  *  I  S  P  T  P  G  T  S  W  L  G  Y  Q  A  R  E  A  G  I  S  L  *  F  W  I  S  C  W  K  G  K  F  *  W  V  *  I  F  V  Q  A  G  *  T  C  N  S  C  C  S  C  C  *  F  Q  F  F  C  Q  T  A  S  I  G  A  R  S  S  I  *  G  Q  V  T  I  F  Q  *  C  L  E  E  T  P  F  *  S  L  A  Y  D  S  S  A  R  A  R  S  P  C  A  C  E  E  Q  P  C  P  D  G  H  D  S  *  I  C  *  N  N  E  K  *  G  *  D  A  *  *  E  R  E  G  *  T  Q  T  *  T  S  R  Q  E  I  K  A  S  S  F  E  V  K  A  F  E  E  F  T  *  T  N  L  *  C  R  *  I  L  E  *  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="761" stop="48"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVLFGSWNQCKFCGFLMALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQRKLEELRKQIQEERERSEFRQLQEQAGLVTRQERLEFLYDSGLAVGKGSSSGFESLSKPAEPVTAAVAAADSSSSAKPQASVPGALFEDKSQSSNDAWRKLHSDPLLMIRQREQEALARVKNNPVQMAMIRKSVETMKNKDKMHDEKEKDERRHKHRDKKSKPHHSKSKHLKNSPRQTSDADEYLSEDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6057" PGL_stop="4062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6057" e_stop="5214"/>
            <exon e_start="4419" e_stop="4062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.861" e_score="0.992"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="6057" e_stop="5214" e_length="844"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.861">
            <gDNA_intron_boundary i_start="5213" i_stop="4420" i_length="794"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="4419" e_stop="4062" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6057" stop="5327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6057" stop="5657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6048" stop="5543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5495" stop="5214"/>
              <exon start="4419" stop="4062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTTGGAGAAGTTCCATTTTTTGGTCTTTCTTCTCTGTCTCATAGGCAAACTGATGTTTGTAGCCATGCTGGGTTTCAAAGCTTTTGAGCTAATCGTGTTTGGGTGTCGCGAAGTTCAAATTTTTTTGTTGTAATTCTTTCCTTTGGTGAAACTACACAACCATTTACTTTGCTTGTTCTTATTACTATCTCTTGTACGACTCAAAAAAACCAATTTAGCATGTTCTCTCTTGAGCAGAAAAACTGTTGCTCGGTATGACACTTCAGGTGGGTATATGAGATTTAGGAGAAAGTTCCATTTCGTGGTGCATCTTCTCTGTCTCGTTAGGCAGGCTAACTGATGCTTGCAGCCATAAAAGATTTCAAAGCTTTTGAGTTGATTCATGTTCTGGCTTGGCAAAGTTCAGTTTCCTTTCACCCCTCCCCAAACCACCCTATTCGTGAAATTATACATGATCTTCCTCTTTTCTTACTCTTATTTTTCTCTCTGCTTTGTTTTATTAACCATGAGGATGTTGAGGTTGTCTTCTATGGAAGTTCAATAAAACTCGTTTTCTCTCGAGCTGAAAAACTGTTGGTTGGCATGGCACCTCAGGTGGGTCTATGAGATTTTGGAATTAAAATTCCAATTCATGGTGTTTCTTCTGACTTTGCACTGTGTCCTTGTTATACTAGTCTGTGGAACTTGATAAAATTGCCATTTACCAGAAGTTTCATTGCATAAACTTTGCAACATTCACTAAAGTTAACCCTAACACTGTACATGGAGTTGTATGTTTTTGGTTAAAGCAGGAACTTAAATCTGATCCACAAGCAGCCAAGATCTGTCACACTTGTTGCG : CTTGTCAAAGGTCTCCTAGAGGCATGGAAATCTAAACCTCTCCAGGTAGAACCAAGGTATAGCAGAAGTCAAAAAATTTCAGAAAAATCTTCATTTACTTGAGGACATTCTAGAGGAAGATGATCATCTTATGGATTCCGATAAACAGACGGAAAATTATGGTTCTGGCCTGCTATCTTTTTGTCCAGTCTCCTCTGCTACCAGATGCTTTGCTCGGGACCAGGTTTGAAGATGGGATTGAATTTTCTACTAAACAGGAAACATGGAACATTATCTTAAGAGGATTGCTTGTTCCCAAATCCTGCAAAGTTTGATCTAAATTGTTATCTTCTTTTCAGAGAGGAGCCAGTATATCCAT</gDNA_template>
            <first_frame> D  F  W  R  S  S  I  F  W  S  F  F  S  V  S  *  A  N  *  C  L  *  P  C  W  V  S  K  L  L  S  *  S  C  L  G  V  A  K  F  K  F  F  C  C  N  S  F  L  W  *  N  Y  T  T  I  Y  F  A  C  S  Y  Y  Y  L  L  Y  D  S  K  K  P  I  *  H  V  L  S  *  A  E  K  L  L  L  G  M  T  L  Q  V  G  I  *  D  L  G  E  S  S  I  S  W  C  I  F  S  V  S  L  G  R  L  T  D  A  C  S  H  K  R  F  Q  S  F  *  V  D  S  C  S  G  L  A  K  F  S  F  L  S  P  L  P  K  P  P  Y  S  *  N  Y  T  *  S  S  S  F  L  T  L  I  F  L  S  A  L  F  Y  *  P  *  G  C  *  G  C  L  L  W  K  F  N  K  T  R  F  L  S  S  *  K  T  V  G  W  H  G  T  S  G  G  S  M  R  F  W  N  *  N  S  N  S  W  C  F  F  *  L  C  T  V  S  L  L  Y  *  S  V  E  L  D  K  I  A  I  Y  Q  K  F  H  C  I  N  F  A  T  F  T  K  V  N  P  N  T  V  H  G  V  V  C  F  W  L  K  Q  E  L  K  S  D  P  Q  A  A  K  I  C  H  T  C  C   : A  C  Q  R  S  P  R  G  M  E  I  *  T  S  P  G  R  T  K  V  *  Q  K  S  K  N  F  R  K  I  F  I  Y  L  R  T  F  *  R  K  M  I  I  L  W  I  P  I  N  R  R  K  I  M  V  L  A  C  Y  L  F  V  Q  S  P  L  L  P  D  A  L  L  G  T  R  F  E  D  G  I  E  F  S  T  K  Q  E  T  W  N  I  I  L  R  G  L  L  V  P  K  S  C  K  V  *  S  K  L  L  S  S  F  Q  R  G  A  S  I  S   </first_frame>
            <second_frame>  I  F  G  E  V  P  F  F  G  L  S  S  L  S  H  R  Q  T  D  V  C  S  H  A  G  F  Q  S  F  *  A  N  R  V  W  V  S  R  S  S  N  F  F  V  V  I  L  S  F  G  E  T  T  Q  P  F  T  L  L  V  L  I  T  I  S  C  T  T  Q  K  N  Q  F  S  M  F  S  L  E  Q  K  N  C  C  S  V  *  H  F  R  W  V  Y  E  I  *  E  K  V  P  F  R  G  A  S  S  L  S  R  *  A  G  *  L  M  L  A  A  I  K  D  F  K  A  F  E  L  I  H  V  L  A  W  Q  S  S  V  S  F  H  P  S  P  N  H  P  I  R  E  I  I  H  D  L  P  L  F  L  L  L  F  F  S  L  L  C  F  I  N  H  E  D  V  E  V  V  F  Y  G  S  S  I  K  L  V  F  S  R  A  E  K  L  L  V  G  M  A  P  Q  V  G  L  *  D  F  G  I  K  I  P  I  H  G  V  S  S  D  F  A  L  C  P  C  Y  T  S  L  W  N  L  I  K  L  P  F  T  R  S  F  I  A  *  T  L  Q  H  S  L  K  L  T  L  T  L  Y  M  E  L  Y  V  F  G  *  S  R  N  L  N  L  I  H  K  Q  P  R  S  V  T  L  V  A  :  L  V  K  G  L  L  E  A  W  K  S  K  P  L  Q  V  E  P  R  Y  S  R  S  Q  K  I  S  E  K  S  S  F  T  *  G  H  S  R  G  R  *  S  S  Y  G  F  R  *  T  D  G  K  L  W  F  W  P  A  I  F  L  S  S  L  L  C  Y  Q  M  L  C  S  G  P  G  L  K  M  G  L  N  F  L  L  N  R  K  H  G  T  L  S  *  E  D  C  L  F  P  N  P  A  K  F  D  L  N  C  Y  L  L  F  R  E  E  P  V  Y  P  </second_frame>
            <third_frame>   F  L  E  K  F  H  F  L  V  F  L  L  C  L  I  G  K  L  M  F  V  A  M  L  G  F  K  A  F  E  L  I  V  F  G  C  R  E  V  Q  I  F  L  L  *  F  F  P  L  V  K  L  H  N  H  L  L  C  L  F  L  L  L  S  L  V  R  L  K  K  T  N  L  A  C  S  L  L  S  R  K  T  V  A  R  Y  D  T  S  G  G  Y  M  R  F  R  R  K  F  H  F  V  V  H  L  L  C  L  V  R  Q  A  N  *  C  L  Q  P  *  K  I  S  K  L  L  S  *  F  M  F  W  L  G  K  V  Q  F  P  F  T  P  P  Q  T  T  L  F  V  K  L  Y  M  I  F  L  F  S  Y  S  Y  F  S  L  C  F  V  L  L  T  M  R  M  L  R  L  S  S  M  E  V  Q  *  N  S  F  S  L  E  L  K  N  C  W  L  A  W  H  L  R  W  V  Y  E  I  L  E  L  K  F  Q  F  M  V  F  L  L  T  L  H  C  V  L  V  I  L  V  C  G  T  *  *  N  C  H  L  P  E  V  S  L  H  K  L  C  N  I  H  *  S  *  P  *  H  C  T  W  S  C  M  F  L  V  K  A  G  T  *  I  *  S  T  S  S  Q  D  L  S  H  L  L  R :   L  S  K  V  S  *  R  H  G  N  L  N  L  S  R  *  N  Q  G  I  A  E  V  K  K  F  Q  K  N  L  H  L  L  E  D  I  L  E  E  D  D  H  L  M  D  S  D  K  Q  T  E  N  Y  G  S  G  L  L  S  F  C  P  V  S  S  A  T  R  C  F  A  R  D  Q  V  *  R  W  D  *  I  F  Y  *  T  G  N  M  E  H  Y  L  K  R  I  A  C  S  Q  I  L  Q  S  L  I  *  I  V  I  F  F  S  E  R  S  Q  Y  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5717" stop="5448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMLAAIKDFKAFELIHVLAWQSSVSFHPSPNHPIREIIHDLPLFLLLFFSLLCFINHEDVEVVFYGSSIKLVFSRAEKLLVGMAPQVGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5920" stop="5714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPLVKLHNHLLCLFLLLSLVRLKKTNLACSLLSRKTVARYDTSGGYMRFRRKFHFVVHLLCLVRQAN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5379" stop="5214"/>
                    <exon start="4419" stop="4385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVELDKIAIYQKFHCINFATFTKVNPNTVHGVVCFWLKQELKSDPQAAKICHTCCACQRSPRGMEI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4306" stop="4106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMIILWIPINRRKIMVLACYLFVQSPLLPDALLGTRFEDGIEFSTKQETWNIILRGLLVPKSCKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17361" PGL_stop="16190"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17361" e_stop="16190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="17361" e_stop="16190" e_length="1172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17361" stop="16616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16803" stop="16190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTTAGTGAAAGATAGAATTACTTATGCATCAGATGGTGCAATGCATTTCAATGTTATGCCATCGTGTAGTTTTATCACCTTCTTTTCTCGTTAGTTACTTCAGGAAAACCTAAATAAGAATTTACTTGTGAAGTATCCTCTTCATCTATTGTTATCGCATTCCCTGACCCTCTTTTCAGATTATACCTGTGAATTATGAGATCAGGTAAAAGAGGTGCAACCCCAGAGATACAAAGCGACACTTGAACTTCCTTCCCGGCAGCCAAAGAAACTGACTGGAAAGTGCACTGTCTGAAGAGAGATTCGATCTTAACAGAATATTCTGTGGGAAGTGCTTCTGATTACGCAAGCTCCTCCAGATTCATCCCAAGCTGCTATATGACAGCTCTAAAGGTGAGAAGTTTGCAGACCGTTGCTCCCTTGTCTACGCTGCCACCTGATGGATCACTAATTGAAGTGACAAAGGGAGCTGAGGCCTCTCATTAATTGTCAACATGGAACTTGAATGTGGTCCTGGAACGAGATATTGGCGACATGAATGGCCTCCCTCTATAGAAACAAGTGATTCTATGAATTCCCCTCTTCCCATGTTTTTTGCCATTCCATGGAATGACACATCGGGTAAAATGGGCAGGTGTTTTGGGACTCAAAAGCCCCTTTTCTTAGTATATTATATATAGTTGTCCTTATTTTGTAATTTTATTAATTTGCTTAGACATAATTTCTGTTAAGTCTATTTGATGATCTATAGCAGGTTTCTTCTGTAGTTGATCAAGTTGATACACTCTCCTTCTCAAGTAGCATGGAGGGACCATTTTCATCATTCAAGCCTGAGCTCTTGTCCAACAGTTTGTTCAATTCATATATTTAAATGATTTCTCTTGAGATTTATTTTATGCATGTTTGAGTTATACCACCCCTGAGTTTCTATTTTTTTATTTTTTTTACTTTCTAATGTTTGGTGTTAATTTAATTTTATTGTGCAGGATCTTAAATGCAGAGATATTCTTGGGTGGTCAAATAATTAAGTTGAGCAGGGTGGTCATCATATAAACTCTACTGTATATTATGAATATTTTTTTTTTGGGTTAATTTAAGATTAGTAATGGTATGAAACAATTAAAGTTATGGAGATTTTAGTCTCTCATTTATTTGAAGCCTTAACTTTCC</gDNA_template>
            <first_frame> *  L  V  K  D  R  I  T  Y  A  S  D  G  A  M  H  F  N  V  M  P  S  C  S  F  I  T  F  F  S  R  *  L  L  Q  E  N  L  N  K  N  L  L  V  K  Y  P  L  H  L  L  L  S  H  S  L  T  L  F  S  D  Y  T  C  E  L  *  D  Q  V  K  E  V  Q  P  Q  R  Y  K  A  T  L  E  L  P  S  R  Q  P  K  K  L  T  G  K  C  T  V  *  R  E  I  R  S  *  Q  N  I  L  W  E  V  L  L  I  T  Q  A  P  P  D  S  S  Q  A  A  I  *  Q  L  *  R  *  E  V  C  R  P  L  L  P  C  L  R  C  H  L  M  D  H  *  L  K  *  Q  R  E  L  R  P  L  I  N  C  Q  H  G  T  *  M  W  S  W  N  E  I  L  A  T  *  M  A  S  L  Y  R  N  K  *  F  Y  E  F  P  S  S  H  V  F  C  H  S  M  E  *  H  I  G  *  N  G  Q  V  F  W  D  S  K  A  P  F  L  S  I  L  Y  I  V  V  L  I  L  *  F  Y  *  F  A  *  T  *  F  L  L  S  L  F  D  D  L  *  Q  V  S  S  V  V  D  Q  V  D  T  L  S  F  S  S  S  M  E  G  P  F  S  S  F  K  P  E  L  L  S  N  S  L  F  N  S  Y  I  *  M  I  S  L  E  I  Y  F  M  H  V  *  V  I  P  P  L  S  F  Y  F  F  I  F  F  T  F  *  C  L  V  L  I  *  F  Y  C  A  G  S  *  M  Q  R  Y  S  W  V  V  K  *  L  S  *  A  G  W  S  S  Y  K  L  Y  C  I  L  *  I  F  F  F  W  V  N  L  R  L  V  M  V  *  N  N  *  S  Y  G  D  F  S  L  S  F  I  *  S  L  N  F   </first_frame>
            <second_frame>  S  *  *  K  I  E  L  L  M  H  Q  M  V  Q  C  I  S  M  L  C  H  R  V  V  L  S  P  S  F  L  V  S  Y  F  R  K  T  *  I  R  I  Y  L  *  S  I  L  F  I  Y  C  Y  R  I  P  *  P  S  F  Q  I  I  P  V  N  Y  E  I  R  *  K  R  C  N  P  R  D  T  K  R  H  L  N  F  L  P  G  S  Q  R  N  *  L  E  S  A  L  S  E  E  R  F  D  L  N  R  I  F  C  G  K  C  F  *  L  R  K  L  L  Q  I  H  P  K  L  L  Y  D  S  S  K  G  E  K  F  A  D  R  C  S  L  V  Y  A  A  T  *  W  I  T  N  *  S  D  K  G  S  *  G  L  S  L  I  V  N  M  E  L  E  C  G  P  G  T  R  Y  W  R  H  E  W  P  P  S  I  E  T  S  D  S  M  N  S  P  L  P  M  F  F  A  I  P  W  N  D  T  S  G  K  M  G  R  C  F  G  T  Q  K  P  L  F  L  V  Y  Y  I  *  L  S  L  F  C  N  F  I  N  L  L  R  H  N  F  C  *  V  Y  L  M  I  Y  S  R  F  L  L  *  L  I  K  L  I  H  S  P  S  Q  V  A  W  R  D  H  F  H  H  S  S  L  S  S  C  P  T  V  C  S  I  H  I  F  K  *  F  L  L  R  F  I  L  C  M  F  E  L  Y  H  P  *  V  S  I  F  L  F  F  L  L  S  N  V  W  C  *  F  N  F  I  V  Q  D  L  K  C  R  D  I  L  G  W  S  N  N  *  V  E  Q  G  G  H  H  I  N  S  T  V  Y  Y  E  Y  F  F  F  G  L  I  *  D  *  *  W  Y  E  T  I  K  V  M  E  I  L  V  S  H  L  F  E  A  L  T  F  </second_frame>
            <third_frame>   V  S  E  R  *  N  Y  L  C  I  R  W  C  N  A  F  Q  C  Y  A  I  V  *  F  Y  H  L  L  F  S  L  V  T  S  G  K  P  K  *  E  F  T  C  E  V  S  S  S  S  I  V  I  A  F  P  D  P  L  F  R  L  Y  L  *  I  M  R  S  G  K  R  G  A  T  P  E  I  Q  S  D  T  *  T  S  F  P  A  A  K  E  T  D  W  K  V  H  C  L  K  R  D  S  I  L  T  E  Y  S  V  G  S  A  S  D  Y  A  S  S  S  R  F  I  P  S  C  Y  M  T  A  L  K  V  R  S  L  Q  T  V  A  P  L  S  T  L  P  P  D  G  S  L  I  E  V  T  K  G  A  E  A  S  H  *  L  S  T  W  N  L  N  V  V  L  E  R  D  I  G  D  M  N  G  L  P  L  *  K  Q  V  I  L  *  I  P  L  F  P  C  F  L  P  F  H  G  M  T  H  R  V  K  W  A  G  V  L  G  L  K  S  P  F  S  *  Y  I  I  Y  S  C  P  Y  F  V  I  L  L  I  C  L  D  I  I  S  V  K  S  I  *  *  S  I  A  G  F  F  C  S  *  S  S  *  Y  T  L  L  L  K  *  H  G  G  T  I  F  I  I  Q  A  *  A  L  V  Q  Q  F  V  Q  F  I  Y  L  N  D  F  S  *  D  L  F  Y  A  C  L  S  Y  T  T  P  E  F  L  F  F  Y  F  F  Y  F  L  M  F  G  V  N  L  I  L  L  C  R  I  L  N  A  E  I  F  L  G  G  Q  I  I  K  L  S  R  V  V  I  I  *  T  L  L  Y  I  M  N  I  F  F  L  G  *  F  K  I  S  N  G  M  K  Q  L  K  L  W  R  F  *  S  L  I  Y  L  K  P  *  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17113" stop="16874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFPAAKETDWKVHCLKRDSILTEYSVGSASDYASSSRFIPSCYMTALKVRSLQTVAPLSTLPPDGSLIEVTKGAEASH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16886" stop="16680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSLIVNMELECGPGTRYWRHEWPPSIETSDSMNSPLPMFFAIPWNDTSGKMGRCFGTQKPLFLVYYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18987" PGL_stop="17572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18987" e_stop="17572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="18987" e_stop="17572" e_length="1416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18987" stop="18242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18289" stop="17572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18288" stop="17714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTGTTTCTTGACCTTTGTGGTGCAGATCTCAATGTAAGATTTGTTTCCAGAGGACCTATACATGTATTAGTACTTAATATCATAATAATGAGTTTTGACAGTGCTTCTGACATTGTGCAGCGAAGTAGATCTCAGATATATCCACTGTTATTGTTAAACCTAAACCGTCAAATATCTTTATATGATTTGACTTTTGGAGCCTTCAATGACCTCCACTGTGGAATTTAAGGTGAGATTTTTTATGGCATTTATTGTTTAGTTGTTTTGGGGTTGGGAACGAGTGAGTTATTGAGAATTGGTTTGGATTGTTTTCTGTCAATTTTTTTTTTAAAAACGCCTATTCATTTTTTAAACTTTAATGTGAGTTAAATAAATAGGTGAAAACTGGCTAAACATCATTAATTATTACTAATCGTATAGAATTTTAAAGTATTAAAAAGGACCCCCTAACAAGCAAGGCCCTTGCATCACAGCTGTTCCTGAAGAACAAAATAATCTCCCATTTGTTATGGGAGAACATTGCCAAACCATGTTTCTGGCTTCTTTTGGTTGCTGAAACATACAGGCTAATGTTAAAAGGGACATGTCATACATATTTGTTTCTCGATTTGAGTGCTGTATTTTTTATTATAATGTTTTTGCGGTTTCTAAGACTGACGTTTTGTCCTGTTTGAACTTAGTCTCCTGGTTTTTGCTTACCCAATCATTTCTATTTCCCTTTAAATGGATTTTGCAGTTCTCAAAATTTTCGTCAATTTTTCATATATCTAGATATTCGTTACATCAAACTTTTTGGAGCCTTGCTTATCTTTAGGAGATGGTGACATCCAGCTTCATATTGAGTTTTTGATTTTTTACCAAGTAGTATTTTTAAAAAATTATATGGTTGTTTGTTGCTTCTCTATGATTTCTTGAAACTCCAAATAGAAATTTATTGCATACATCGGTAATTCTTGTTAATAAGTTTGTGTTGTTTTTGTCACTGCACCACTAGAAGAATATTTGTCGTGGGATGTATATTTATCCTATAGGTATCAATTTTGGGTTGTACTAGCCCCAAGGCTTTGGTCAGTGATGAGGACTCAAAATGGGATTGTACAGGGAACATGTCCCAAGTTTGAACCCTATCATTGACAATGAGCTTGATATTTAAGTGGGATCAAGGCAGAGAGGTTGCTTATAATCTCAGCAGTCTCAAATTTGTAGGTCAATTTTTTTTTTTTGAGAAGGATTTGTAGGTCAATGTAAGCCATCTATTTAACGAGACAATTATGTTATTCAGAAAAAAAGAAGAAGTTGAGCTTTAATATGACAGAGACAAGTATTAGATAAGTAATATGAATGTTGAAGAGAAGCTTATGGCAACTAGTTGATTCTTAATGTTACTTGTAGGACTGGGGCCATCTTTCTCT</gDNA_template>
            <first_frame> V  F  V  S  *  P  L  W  C  R  S  Q  C  K  I  C  F  Q  R  T  Y  T  C  I  S  T  *  Y  H  N  N  E  F  *  Q  C  F  *  H  C  A  A  K  *  I  S  D  I  S  T  V  I  V  K  P  K  P  S  N  I  F  I  *  F  D  F  W  S  L  Q  *  P  P  L  W  N  L  R  *  D  F  L  W  H  L  L  F  S  C  F  G  V  G  N  E  *  V  I  E  N  W  F  G  L  F  S  V  N  F  F  F  K  N  A  Y  S  F  F  K  L  *  C  E  L  N  K  *  V  K  T  G  *  T  S  L  I  I  T  N  R  I  E  F  *  S  I  K  K  D  P  L  T  S  K  A  L  A  S  Q  L  F  L  K  N  K  I  I  S  H  L  L  W  E  N  I  A  K  P  C  F  W  L  L  L  V  A  E  T  Y  R  L  M  L  K  G  T  C  H  T  Y  L  F  L  D  L  S  A  V  F  F  I  I  M  F  L  R  F  L  R  L  T  F  C  P  V  *  T  *  S  P  G  F  C  L  P  N  H  F  Y  F  P  L  N  G  F  C  S  S  Q  N  F  R  Q  F  F  I  Y  L  D  I  R  Y  I  K  L  F  G  A  L  L  I  F  R  R  W  *  H  P  A  S  Y  *  V  F  D  F  L  P  S  S  I  F  K  K  L  Y  G  C  L  L  L  L  Y  D  F  L  K  L  Q  I  E  I  Y  C  I  H  R  *  F  L  L  I  S  L  C  C  F  C  H  C  T  T  R  R  I  F  V  V  G  C  I  F  I  L  *  V  S  I  L  G  C  T  S  P  K  A  L  V  S  D  E  D  S  K  W  D  C  T  G  N  M  S  Q  V  *  T  L  S  L  T  M  S  L  I  F  K  W  D  Q  G  R  E  V  A  Y  N  L  S  S  L  K  F  V  G  Q  F  F  F  F  E  K  D  L  *  V  N  V  S  H  L  F  N  E  T  I  M  L  F  R  K  K  E  E  V  E  L  *  Y  D  R  D  K  Y  *  I  S  N  M  N  V  E  E  K  L  M  A  T  S  *  F  L  M  L  L  V  G  L  G  P  S  F  S </first_frame>
            <second_frame>  F  L  F  L  D  L  C  G  A  D  L  N  V  R  F  V  S  R  G  P  I  H  V  L  V  L  N  I  I  I  M  S  F  D  S  A  S  D  I  V  Q  R  S  R  S  Q  I  Y  P  L  L  L  L  N  L  N  R  Q  I  S  L  Y  D  L  T  F  G  A  F  N  D  L  H  C  G  I  *  G  E  I  F  Y  G  I  Y  C  L  V  V  L  G  L  G  T  S  E  L  L  R  I  G  L  D  C  F  L  S  I  F  F  L  K  T  P  I  H  F  L  N  F  N  V  S  *  I  N  R  *  K  L  A  K  H  H  *  L  L  L  I  V  *  N  F  K  V  L  K  R  T  P  *  Q  A  R  P  L  H  H  S  C  S  *  R  T  K  *  S  P  I  C  Y  G  R  T  L  P  N  H  V  S  G  F  F  W  L  L  K  H  T  G  *  C  *  K  G  H  V  I  H  I  C  F  S  I  *  V  L  Y  F  L  L  *  C  F  C  G  F  *  D  *  R  F  V  L  F  E  L  S  L  L  V  F  A  Y  P  I  I  S  I  S  L  *  M  D  F  A  V  L  K  I  F  V  N  F  S  Y  I  *  I  F  V  T  S  N  F  L  E  P  C  L  S  L  G  D  G  D  I  Q  L  H  I  E  F  L  I  F  Y  Q  V  V  F  L  K  N  Y  M  V  V  C  C  F  S  M  I  S  *  N  S  K  *  K  F  I  A  Y  I  G  N  S  C  *  *  V  C  V  V  F  V  T  A  P  L  E  E  Y  L  S  W  D  V  Y  L  S  Y  R  Y  Q  F  W  V  V  L  A  P  R  L  W  S  V  M  R  T  Q  N  G  I  V  Q  G  T  C  P  K  F  E  P  Y  H  *  Q  *  A  *  Y  L  S  G  I  K  A  E  R  L  L  I  I  S  A  V  S  N  L  *  V  N  F  F  F  L  R  R  I  C  R  S  M  *  A  I  Y  L  T  R  Q  L  C  Y  S  E  K  K  K  K  L  S  F  N  M  T  E  T  S  I  R  *  V  I  *  M  L  K  R  S  L  W  Q  L  V  D  S  *  C  Y  L  *  D  W  G  H  L  S   </second_frame>
            <third_frame>   F  C  F  L  T  F  V  V  Q  I  S  M  *  D  L  F  P  E  D  L  Y  M  Y  *  Y  L  I  S  *  *  *  V  L  T  V  L  L  T  L  C  S  E  V  D  L  R  Y  I  H  C  Y  C  *  T  *  T  V  K  Y  L  Y  M  I  *  L  L  E  P  S  M  T  S  T  V  E  F  K  V  R  F  F  M  A  F  I  V  *  L  F  W  G  W  E  R  V  S  Y  *  E  L  V  W  I  V  F  C  Q  F  F  F  *  K  R  L  F  I  F  *  T  L  M  *  V  K  *  I  G  E  N  W  L  N  I  I  N  Y  Y  *  S  Y  R  I  L  K  Y  *  K  G  P  P  N  K  Q  G  P  C  I  T  A  V  P  E  E  Q  N  N  L  P  F  V  M  G  E  H  C  Q  T  M  F  L  A  S  F  G  C  *  N  I  Q  A  N  V  K  R  D  M  S  Y  I  F  V  S  R  F  E  C  C  I  F  Y  Y  N  V  F  A  V  S  K  T  D  V  L  S  C  L  N  L  V  S  W  F  L  L  T  Q  S  F  L  F  P  F  K  W  I  L  Q  F  S  K  F  S  S  I  F  H  I  S  R  Y  S  L  H  Q  T  F  W  S  L  A  Y  L  *  E  M  V  T  S  S  F  I  L  S  F  *  F  F  T  K  *  Y  F  *  K  I  I  W  L  F  V  A  S  L  *  F  L  E  T  P  N  R  N  L  L  H  T  S  V  I  L  V  N  K  F  V  L  F  L  S  L  H  H  *  K  N  I  C  R  G  M  Y  I  Y  P  I  G  I  N  F  G  L  Y  *  P  Q  G  F  G  Q  *  *  G  L  K  M  G  L  Y  R  E  H  V  P  S  L  N  P  I  I  D  N  E  L  D  I  *  V  G  S  R  Q  R  G  C  L  *  S  Q  Q  S  Q  I  C  R  S  I  F  F  F  *  E  G  F  V  G  Q  C  K  P  S  I  *  R  D  N  Y  V  I  Q  K  K  R  R  S  *  A  L  I  *  Q  R  Q  V  L  D  K  *  Y  E  C  *  R  E  A  Y  G  N  *  L  I  L  N  V  T  C  R  T  G  A  I  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18427" stop="18170"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIQANVKRDMSYIFVSRFECCIFYYNVFAVSKTDVLSCLNLVSWFLLTQSFLFPFKWILQFSKFSSIFHISRYSLHQTFWSLAYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18555" stop="18310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKKDPLTSKALASQLFLKNKIISHLLWENIAKPCFWLLLVAETYRLMLKGTCHTYLFLDLSAVFFIIMFLRFLRLTFCPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18986" stop="18756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFLDLCGADLNVRFVSRGPIHVLVLNIIIMSFDSASDIVQRSRSQIYPLLLLNLNRQISLYDLTFGAFNDLHCGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25828" PGL_stop="22221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25819" e_stop="25687"/>
            <exon e_start="24446" e_stop="24333"/>
            <exon e_start="24206" e_stop="24065"/>
            <exon e_start="22706" e_stop="22221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.465" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="25819" e_stop="25687" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25686" i_stop="24447" i_length="1240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24446" e_stop="24333" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.465" acc_prob="0.778">
            <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24206" e_stop="24065" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="22706" e_stop="22221" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25819" stop="25687"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25818" stop="25687"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25818" stop="25687"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22689" stop="22221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGG : GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG : TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA : GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGTGCATTACTATATGCTCTATATTGAGCTGAAATCCATGTTGAGCTTTTGTTTTGTTATTACTAAGTACTATTTTGTTCCTACTTCATATT</gDNA_template>
            <first_frame> I  L  Q  Y  A  H  V  P  F  F  F  L  G  N  *  L  M  C  S  H  S  N  E  F  V  L  T  F  L  R  I  L  M  T  E  F  G  I  S  *  Q  L  N  R   : G  S  *  Q  P  C  Y  G  H  T  K  L  L  V  D  N  S  T  F  I  T  K  S  I  Y  V  A  T  E  I  R  T  Y  K  *  Y  T  K   : V  P  L  F  H  G  *  R  K  R  F  W  R  T  K  D  R  S  H  H  H  F  K  E  N  T  R  D  W  V  C  C  P  T  A  K  E  F  P  L  G  A  D  S  S  M  E  Q :   T  G  C  L  *  C  R  N  V  C  *  S  G  Q  T  N  I  S  L  G  S  S  T  *  Q  T  L  E  K  K  Y  D  V  N  T  R  P  M  N  L  C  C  G  P  G  M  I  M  S  Q  T  P  P  Y  L  D  L  *  K  L  L  H  L  V  F  *  E  A  H  T  L  A  P  K  D  L  *  F  L  F  L  W  T  T  S  S  T  H  V  V  E  Q  K  F  T  F  L  S  I  F  S  C  I  G  A  D  Y  S  T  F  L  G  N  I  F  F  C  N  L  D  D  P  I  D  I  K  L  Y  T  I  Q  C  A  L  L  Y  A  L  Y  *  A  E  I  H  V  E  L  L  F  C  Y  Y  *  V  L  F  C  S  Y  F  I   </first_frame>
            <second_frame>  F  F  N  M  R  M  F  L  F  F  F  L  V  I  S  *  C  A  L  T  P  M  N  L  F  S  L  S  C  E  Y  *  *  L  N  L  G  S  L  D  N  *  I  G  :  V  P  N  N  P  A  M  V  T  R  N  S  S  L  I  I  Q  H  S  S  L  S  Q  Y  M  L  P  P  K  Y  E  P  T  S  D  I  P  K  :  F  P  F  F  M  D  E  E  N  A  S  G  V  L  R  T  E  V  I  I  I  S  R  K  I  Q  G  T  G  F  V  V  L  P  L  K  N  F  H  W  G  L  I  H  L  W  N   : R  P  D  A  F  N  A  G  M  Y  A  N  L  V  K  Q  T  Y  L  W  A  H  P  L  N  K  H  *  K  R  N  M  M  L  I  H  G  Q  *  T  F  V  V  V  Q  G  *  *  C  L  R  L  L  R  I  W  I  S  K  S  S  F  I  W  C  F  K  K  R  T  L  W  H  P  K  I  C  N  S  Y  S  F  G  Q  P  A  V  P  M  S  W  S  K  S  S  L  F  C  P  F  S  H  V  L  E  Q  I  I  Q  H  F  W  G  T  F  S  S  A  I  *  M  I  L  L  I  *  N  Y  I  P  F  S  V  H  Y  Y  M  L  Y  I  E  L  K  S  M  L  S  F  C  F  V  I  T  K  Y  Y  F  V  P  T  S  Y  </second_frame>
            <third_frame>   S  S  I  C  A  C  S  F  F  F  S  W  *  L  V  D  V  L  S  L  Q  *  I  C  S  H  F  L  A  N  T  D  D  *  I  W  D  L  L  T  T  E  S  G :   F  L  T  T  L  L  W  S  H  E  T  P  R  *  *  F  N  I  H  H  *  V  N  I  C  C  H  R  N  T  N  L  Q  V  I  Y  Q  S :   S  P  F  S  W  M  K  K  T  L  L  A  Y  *  G  Q  K  S  S  S  F  Q  G  K  Y  K  G  L  G  L  L  S  Y  R  *  R  I  S  T  G  G  *  F  I  Y  G  T  :  D  R  M  P  L  M  Q  E  C  M  L  I  W  S  N  K  H  I  S  G  L  I  H  L  T  N  I  R  K  E  I  *  C  *  Y  T  A  N  E  P  L  L  W  S  R  D  D  N  V  S  D  S  S  V  F  G  S  L  K  A  P  S  F  G  V  L  R  S  A  H  F  G  T  Q  R  F  V  I  P  I  P  L  D  N  Q  Q  Y  P  C  R  G  A  K  V  H  F  F  V  H  F  L  M  Y  W  S  R  L  F  N  I  F  G  E  H  F  L  L  Q  S  R  *  S  Y  *  Y  K  I  I  Y  H  S  V  C  I  T  I  C  S  I  L  S  *  N  P  C  *  A  F  V  L  L  L  L  S  T  I  L  F  L  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25692" stop="25687"/>
                    <exon start="24446" stop="24333"/>
                    <exon start="24206" stop="24065"/>
                    <exon start="22706" stop="22624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGVPNNPAMVTRNSSLIIQHSSLSQYMLPPKYEPTSDIPKFPFFMDEENASGVLRTEVIIISRKIQGTGFVVLPLKNFHWGLIHLWNRPDAFNAGMYANLVKQTYLWAHPLNKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22604" stop="22344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTANEPLLWSRDDNVSDSSVFGSLKAPSFGVLRSAHFGTQRFVIPIPLDNQQYPCRGAKVHFFVHFLMYWSRLFNIFGEHFLLQSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25814" e_stop="25783"/>
            <exon e_start="24446" e_stop="24333"/>
            <exon e_start="24206" e_stop="24065"/>
            <exon e_start="22706" e_stop="22221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25814" e_stop="25783" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25782" i_stop="24447" i_length="1336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24446" e_stop="24333" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.465" acc_prob="0.778">
            <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24206" e_stop="24065" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="22706" e_stop="22221" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25814" stop="25783"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25814" stop="25783"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22689" stop="22221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATATGCGCATGTTCCTTTTTTTTTTCTTG : GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG : TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA : GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGTGCATTACTATATGCTCTATATTGAGCTGAAATCCATGTTGAGCTTTTGTTTTGTTATTACTAAGTACTATTTTGTTCCTACTTCATATT</gDNA_template>
            <first_frame> S  I  C  A  C  S  F  F  F  S  W :   F  L  T  T  L  L  W  S  H  E  T  P  R  *  *  F  N  I  H  H  *  V  N  I  C  C  H  R  N  T  N  L  Q  V  I  Y  Q  S :   S  P  F  S  W  M  K  K  T  L  L  A  Y  *  G  Q  K  S  S  S  F  Q  G  K  Y  K  G  L  G  L  L  S  Y  R  *  R  I  S  T  G  G  *  F  I  Y  G  T  :  D  R  M  P  L  M  Q  E  C  M  L  I  W  S  N  K  H  I  S  G  L  I  H  L  T  N  I  R  K  E  I  *  C  *  Y  T  A  N  E  P  L  L  W  S  R  D  D  N  V  S  D  S  S  V  F  G  S  L  K  A  P  S  F  G  V  L  R  S  A  H  F  G  T  Q  R  F  V  I  P  I  P  L  D  N  Q  Q  Y  P  C  R  G  A  K  V  H  F  F  V  H  F  L  M  Y  W  S  R  L  F  N  I  F  G  E  H  F  L  L  Q  S  R  *  S  Y  *  Y  K  I  I  Y  H  S  V  C  I  T  I  C  S  I  L  S  *  N  P  C  *  A  F  V  L  L  L  L  S  T  I  L  F  L  L  H  I </first_frame>
            <second_frame>  Q  Y  A  H  V  P  F  F  F  L   : G  S  *  Q  P  C  Y  G  H  T  K  L  L  V  D  N  S  T  F  I  T  K  S  I  Y  V  A  T  E  I  R  T  Y  K  *  Y  T  K   : V  P  L  F  H  G  *  R  K  R  F  W  R  T  K  D  R  S  H  H  H  F  K  E  N  T  R  D  W  V  C  C  P  T  A  K  E  F  P  L  G  A  D  S  S  M  E  Q :   T  G  C  L  *  C  R  N  V  C  *  S  G  Q  T  N  I  S  L  G  S  S  T  *  Q  T  L  E  K  K  Y  D  V  N  T  R  P  M  N  L  C  C  G  P  G  M  I  M  S  Q  T  P  P  Y  L  D  L  *  K  L  L  H  L  V  F  *  E  A  H  T  L  A  P  K  D  L  *  F  L  F  L  W  T  T  S  S  T  H  V  V  E  Q  K  F  T  F  L  S  I  F  S  C  I  G  A  D  Y  S  T  F  L  G  N  I  F  F  C  N  L  D  D  P  I  D  I  K  L  Y  T  I  Q  C  A  L  L  Y  A  L  Y  *  A  E  I  H  V  E  L  L  F  C  Y  Y  *  V  L  F  C  S  Y  F  I   </second_frame>
            <third_frame>   N  M  R  M  F  L  F  F  F  L  :  V  P  N  N  P  A  M  V  T  R  N  S  S  L  I  I  Q  H  S  S  L  S  Q  Y  M  L  P  P  K  Y  E  P  T  S  D  I  P  K  :  F  P  F  F  M  D  E  E  N  A  S  G  V  L  R  T  E  V  I  I  I  S  R  K  I  Q  G  T  G  F  V  V  L  P  L  K  N  F  H  W  G  L  I  H  L  W  N   : R  P  D  A  F  N  A  G  M  Y  A  N  L  V  K  Q  T  Y  L  W  A  H  P  L  N  K  H  *  K  R  N  M  M  L  I  H  G  Q  *  T  F  V  V  V  Q  G  *  *  C  L  R  L  L  R  I  W  I  S  K  S  S  F  I  W  C  F  K  K  R  T  L  W  H  P  K  I  C  N  S  Y  S  F  G  Q  P  A  V  P  M  S  W  S  K  S  S  L  F  C  P  F  S  H  V  L  E  Q  I  I  Q  H  F  W  G  T  F  S  S  A  I  *  M  I  L  L  I  *  N  Y  I  P  F  S  V  H  Y  Y  M  L  Y  I  E  L  K  S  M  L  S  F  C  F  V  I  T  K  Y  Y  F  V  P  T  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25812" stop="25783"/>
                    <exon start="24446" stop="24333"/>
                    <exon start="24206" stop="24065"/>
                    <exon start="22706" stop="22624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMRMFLFFFLVPNNPAMVTRNSSLIIQHSSLSQYMLPPKYEPTSDIPKFPFFMDEENASGVLRTEVIIISRKIQGTGFVVLPLKNFHWGLIHLWNRPDAFNAGMYANLVKQTYLWAHPLNKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22604" stop="22344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTANEPLLWSRDDNVSDSSVFGSLKAPSFGVLRSAHFGTQRFVIPIPLDNQQYPCRGAKVHFFVHFLMYWSRLFNIFGEHFLLQSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25828" e_stop="25786"/>
            <exon e_start="24446" e_stop="24333"/>
            <exon e_start="24206" e_stop="24065"/>
            <exon e_start="22706" e_stop="22221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.884"/>
          <exon-intron don_prob="0.465" acc_prob="0.778" e_score="0.965"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.810"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="25828" e_stop="25786" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25785" i_stop="24447" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="24446" e_stop="24333" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.465" acc_prob="0.778">
            <gDNA_intron_boundary i_start="24332" i_stop="24207" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="0.810">
            <gDNA_exon_boundary e_start="24206" e_stop="24065" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24064" i_stop="22707" i_length="1358"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="22706" e_stop="22221" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25828" stop="25786"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25828" stop="25786"/>
              <exon start="24446" stop="24333"/>
              <exon start="24206" stop="24065"/>
              <exon start="22706" stop="22312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22689" stop="22221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTATGAATTCTTCAATATGCGCATGTTCCTTTTTTTTTTC : GTTCCTAACAACCCTGCTATGGTCACACGAAACTCCTCGTTGATAATTCAACATTCATCACTAAGTCAATATATGTTGCCACCGAAATACGAACCTACAAGTGATATACCAAAG : TTCCCCTTTTTCATGGATGAAGAAAACGCTTCTGGCGTACTAAGGACAGAAGTCATCATCATTTCAAGGAAAATACAAGGGACTGGGTTTGTTGTCCTACCGCTAAAGAATTTCCACTGGGGGCTGATTCATCTATGGAACA : GACCGGATGCCTTTAATGCAGGAATGTATGCTAATCTGGTCAAACAAACATATCTCTGGGCTCATCCACTTAACAAACATTAGAAAAGAAATATGATGTTAATACACGGCCAATGAACCTTTGTTGTGGTCCAGGGATGATAATGTCTCAGACTCCTCCGTATTTGGATCTCTAAAAGCTCCTTCATTTGGTGTTTTAAGAAGCGCACACTTTGGCACCCAAAGATTTGTAATTCCTATTCCTTTGGACAACCAGCAGTACCCATGTCGTGGAGCAAAAGTTCACTTTTTTGTCCATTTTCTCATGTATTGGAGCAGATTATTCAACATTTTTGGGGAACATTTTCTTCTGCAATCTAGATGATCCTATTGATATAAAATTATATACCATTCAGTGTGCATTACTATATGCTCTATATTGAGCTGAAATCCATGTTGAGCTTTTGTTTTGTTATTACTAAGTACTATTTTGTTCCTACTTCATATT</gDNA_template>
            <first_frame> P  L  *  I  L  Q  Y  A  H  V  P  F  F  F   : R  S  *  Q  P  C  Y  G  H  T  K  L  L  V  D  N  S  T  F  I  T  K  S  I  Y  V  A  T  E  I  R  T  Y  K  *  Y  T  K   : V  P  L  F  H  G  *  R  K  R  F  W  R  T  K  D  R  S  H  H  H  F  K  E  N  T  R  D  W  V  C  C  P  T  A  K  E  F  P  L  G  A  D  S  S  M  E  Q :   T  G  C  L  *  C  R  N  V  C  *  S  G  Q  T  N  I  S  L  G  S  S  T  *  Q  T  L  E  K  K  Y  D  V  N  T  R  P  M  N  L  C  C  G  P  G  M  I  M  S  Q  T  P  P  Y  L  D  L  *  K  L  L  H  L  V  F  *  E  A  H  T  L  A  P  K  D  L  *  F  L  F  L  W  T  T  S  S  T  H  V  V  E  Q  K  F  T  F  L  S  I  F  S  C  I  G  A  D  Y  S  T  F  L  G  N  I  F  F  C  N  L  D  D  P  I  D  I  K  L  Y  T  I  Q  C  A  L  L  Y  A  L  Y  *  A  E  I  H  V  E  L  L  F  C  Y  Y  *  V  L  F  C  S  Y  F  I   </first_frame>
            <second_frame>  L  Y  E  F  F  N  M  R  M  F  L  F  F  F  :  V  P  N  N  P  A  M  V  T  R  N  S  S  L  I  I  Q  H  S  S  L  S  Q  Y  M  L  P  P  K  Y  E  P  T  S  D  I  P  K  :  F  P  F  F  M  D  E  E  N  A  S  G  V  L  R  T  E  V  I  I  I  S  R  K  I  Q  G  T  G  F  V  V  L  P  L  K  N  F  H  W  G  L  I  H  L  W  N   : R  P  D  A  F  N  A  G  M  Y  A  N  L  V  K  Q  T  Y  L  W  A  H  P  L  N  K  H  *  K  R  N  M  M  L  I  H  G  Q  *  T  F  V  V  V  Q  G  *  *  C  L  R  L  L  R  I  W  I  S  K  S  S  F  I  W  C  F  K  K  R  T  L  W  H  P  K  I  C  N  S  Y  S  F  G  Q  P  A  V  P  M  S  W  S  K  S  S  L  F  C  P  F  S  H  V  L  E  Q  I  I  Q  H  F  W  G  T  F  S  S  A  I  *  M  I  L  L  I  *  N  Y  I  P  F  S  V  H  Y  Y  M  L  Y  I  E  L  K  S  M  L  S  F  C  F  V  I  T  K  Y  Y  F  V  P  T  S  Y  </second_frame>
            <third_frame>   F  M  N  S  S  I  C  A  C  S  F  F  F  S :   F  L  T  T  L  L  W  S  H  E  T  P  R  *  *  F  N  I  H  H  *  V  N  I  C  C  H  R  N  T  N  L  Q  V  I  Y  Q  S :   S  P  F  S  W  M  K  K  T  L  L  A  Y  *  G  Q  K  S  S  S  F  Q  G  K  Y  K  G  L  G  L  L  S  Y  R  *  R  I  S  T  G  G  *  F  I  Y  G  T  :  D  R  M  P  L  M  Q  E  C  M  L  I  W  S  N  K  H  I  S  G  L  I  H  L  T  N  I  R  K  E  I  *  C  *  Y  T  A  N  E  P  L  L  W  S  R  D  D  N  V  S  D  S  S  V  F  G  S  L  K  A  P  S  F  G  V  L  R  S  A  H  F  G  T  Q  R  F  V  I  P  I  P  L  D  N  Q  Q  Y  P  C  R  G  A  K  V  H  F  F  V  H  F  L  M  Y  W  S  R  L  F  N  I  F  G  E  H  F  L  L  Q  S  R  *  S  Y  *  Y  K  I  I  Y  H  S  V  C  I  T  I  C  S  I  L  S  *  N  P  C  *  A  F  V  L  L  L  L  S  T  I  L  F  L  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25827" stop="25786"/>
                    <exon start="24446" stop="24333"/>
                    <exon start="24206" stop="24065"/>
                    <exon start="22706" stop="22624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYEFFNMRMFLFFFVPNNPAMVTRNSSLIIQHSSLSQYMLPPKYEPTSDIPKFPFFMDEENASGVLRTEVIIISRKIQGTGFVVLPLKNFHWGLIHLWNRPDAFNAGMYANLVKQTYLWAHPLNKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22604" stop="22344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTANEPLLWSRDDNVSDSSVFGSLKAPSFGVLRSAHFGTQRFVIPIPLDNQQYPCRGAKVHFFVHFLMYWSRLFNIFGEHFLLQSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25820" e_stop="25238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="25820" e_stop="25238" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25820" stop="25238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCTTCAATATGCGCATGTTCCTTTTTTTTTTCTTGGTAATTAGTTGATGTGCTCTCACTCCAATGAATTTGTTCTCACTTTCTTGCGAATACTGATGACTGAATTTGGGATCTCTTGACAACTGAATCGGGGAATGTTGCTTTCTATTCCCTTTTTCTTGTTTCTTGTTAGTTGATAAATAGTTTATGTGCTCTCTACATATCATGATTATTATATTGGCAACACAAGTTTTAATCTTTCCACTTCATTGCATTCTTGGATCTTGATATCTGAATTTGGGCATGTTCTTTTTTCTTTTATTCTGTTTAATGCTTTTTTGGTGGGTTTGCATGTTGGTTCTAATTAGTTGATAAATTGTTCATGTCCTTTCTTCGTATCATGATTCTTGACAACGATATTGATATTTGGTACCAATTTGTTGAGAACACTTTTTACTTTCATGTTGGTCTAACTATATATATATTGAGATTACTTCTTACTTTCAACAATTTCCATGTTTATTGTCTAGTTCTTGGAAGAATTTTGAATCTTGTGGTTTTGACTAGAATGTATCAAAATGTCAATCTTTGGTCTTAATCAT</gDNA_template>
            <first_frame> N  S  S  I  C  A  C  S  F  F  F  S  W  *  L  V  D  V  L  S  L  Q  *  I  C  S  H  F  L  A  N  T  D  D  *  I  W  D  L  L  T  T  E  S  G  N  V  A  F  Y  S  L  F  L  V  S  C  *  L  I  N  S  L  C  A  L  Y  I  S  *  L  L  Y  W  Q  H  K  F  *  S  F  H  F  I  A  F  L  D  L  D  I  *  I  W  A  C  S  F  F  F  Y  S  V  *  C  F  F  G  G  F  A  C  W  F  *  L  V  D  K  L  F  M  S  F  L  R  I  M  I  L  D  N  D  I  D  I  W  Y  Q  F  V  E  N  T  F  Y  F  H  V  G  L  T  I  Y  I  L  R  L  L  L  T  F  N  N  F  H  V  Y  C  L  V  L  G  R  I  L  N  L  V  V  L  T  R  M  Y  Q  N  V  N  L  W  S  *  S  </first_frame>
            <second_frame>  I  L  Q  Y  A  H  V  P  F  F  F  L  G  N  *  L  M  C  S  H  S  N  E  F  V  L  T  F  L  R  I  L  M  T  E  F  G  I  S  *  Q  L  N  R  G  M  L  L  S  I  P  F  F  L  F  L  V  S  *  *  I  V  Y  V  L  S  T  Y  H  D  Y  Y  I  G  N  T  S  F  N  L  S  T  S  L  H  S  W  I  L  I  S  E  F  G  H  V  L  F  S  F  I  L  F  N  A  F  L  V  G  L  H  V  G  S  N  *  L  I  N  C  S  C  P  F  F  V  S  *  F  L  T  T  I  L  I  F  G  T  N  L  L  R  T  L  F  T  F  M  L  V  *  L  Y  I  Y  *  D  Y  F  L  L  S  T  I  S  M  F  I  V  *  F  L  E  E  F  *  I  L  W  F  *  L  E  C  I  K  M  S  I  F  G  L  N  H </second_frame>
            <third_frame>   F  F  N  M  R  M  F  L  F  F  F  L  V  I  S  *  C  A  L  T  P  M  N  L  F  S  L  S  C  E  Y  *  *  L  N  L  G  S  L  D  N  *  I  G  E  C  C  F  L  F  P  F  S  C  F  L  L  V  D  K  *  F  M  C  S  L  H  I  M  I  I  I  L  A  T  Q  V  L  I  F  P  L  H  C  I  L  G  S  *  Y  L  N  L  G  M  F  F  F  L  L  F  C  L  M  L  F  W  W  V  C  M  L  V  L  I  S  *  *  I  V  H  V  L  S  S  Y  H  D  S  *  Q  R  Y  *  Y  L  V  P  I  C  *  E  H  F  L  L  S  C  W  S  N  Y  I  Y  I  E  I  T  S  Y  F  Q  Q  F  P  C  L  L  S  S  S  W  K  N  F  E  S  C  G  F  D  *  N  V  S  K  C  Q  S  L  V  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25475" stop="25242"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVDKLFMSFLRIMILDNDIDIWYQFVENTFYFHVGLTIYILRLLLTFNNFHVYCLVLGRILNLVVLTRMYQNVNLWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41252" PGL_stop="39636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41252" e_stop="41073"/>
            <exon e_start="40990" e_stop="40357"/>
            <exon e_start="40128" e_stop="39992"/>
            <exon e_start="39902" e_stop="39636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.816"/>
          <exon-intron don_prob="0.954" acc_prob="0.903" e_score="0.948"/>
          <exon-intron don_prob="0.330" acc_prob="0.967" e_score="0.985"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.816">
            <gDNA_exon_boundary e_start="41252" e_stop="41073" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41072" i_stop="40991" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="40990" e_stop="40357" e_length="634"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.903">
            <gDNA_intron_boundary i_start="40356" i_stop="40129" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="40128" e_stop="39992" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.330" acc_prob="0.967">
            <gDNA_intron_boundary i_start="39991" i_stop="39903" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="39902" e_stop="39636" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41252" stop="41073"/>
              <exon start="40990" stop="40394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41251" stop="41073"/>
              <exon start="40990" stop="40692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40771" stop="40357"/>
              <exon start="40128" stop="39992"/>
              <exon start="39902" stop="39636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTTTTCTTGGGACATTAAGCGAATGCGTGAGGCTATTTGTAGTTCAATGTCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCAACAAAGTCATTGACGTGGAGTTGTTCTTGAACCCACTCGGACAACTCTAATTATAAGAAGTTGTGATTACTA : GACTTTTTGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAAAAGTCTGCTGAGAACGTCATAGTCAAGTGACTAACGGTGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTCTGTGGCTTGCACAAAAGGCAGTGACCGATGGGACTTTTTATTTTCAGCCTCCATTTTCGTCTAGGTTGAAACAGAGGATGAGTTTGGGGTGCTAAATCCAGTTGGGTGTTCGTCTAGTTGCTCAATTTTGTCTTCAGCAAAGTCATTGGAGAGTCAAGAAGGTTATTGACCAAAAATTCATCATCATAGGACTGGTGGTGGGTCATTTTCAAGGCTATTTTAGGCCTGAAATAACTTGTTGTTTCAATGCCTTTCTGAAGATGTCCATGCCCTGTTGAATGCCCAAAAACAGAAACGGAAAAGCATTATATAAAATGCAGAAAAATGGGTGTAAAATTTCATGGAAATCGTGTACTCCTAGACCCGATGCATTTTGGTGTGCAGAAGGTTCTGCTTAATTTTTTATTTTATTTCATCAGCTGATTTTTTTTTTTTGAAGCATCTGGTCTCCCACAAAATGGCTGGTGCTGATGGGAGAAAGATATG : CGACATCAAAATACTGCCATTCAGATGATATGCATGCTTTCCCAGCAAGCTTTGGCCTTAAAGGAGATGCTCTGAGTTCTACTTCTGACGTTTCCTTGTTGAAAATTGTTACAAAAACTCATGGGAAGATTTTGACG : GGCAAGTATTTGCACTTTGGAATTGATAATTGTAGACAAGATGTTGGTACAACAGGTATTTCTGTATGAGGCTGTATGAGGCTACCTGGGACAAGAGTTGACTGTTGTTTGCTAGTAAGGAAATTTGTTGGGATTTTACTTTTTGCATTTGTTGTTCCTGATGTATTTTACAACCAGCCAGTTCGAAGGAAGCAAATGCACTCCAAATACTTCTAGTTCTCTCACAATTCAAACGAATAAAAAATATTGATTTACACACTTCACTTC</gDNA_template>
            <first_frame> Y  F  S  W  D  I  K  R  M  R  E  A  I  C  S  S  M  S  L  C  F  H  K  G  C  L  G  V  F  Q  Q  L  Y  A  G  A  T  K  S  L  T  W  S  C  S  *  T  H  S  D  N  S  N  Y  K  K  L  *  L  L  :  D  F  L  T  L  I  V  C  Y  C  F  H  L  R  I  S  K  S  L  L  R  T  S  *  S  S  D  *  R  W  Q  V  V  P  S  C  S  F  N  Q  L  D  *  L  H  L  *  I  C  L  W  L  A  Q  K  A  V  T  D  G  T  F  Y  F  Q  P  P  F  S  S  R  L  K  Q  R  M  S  L  G  C  *  I  Q  L  G  V  R  L  V  A  Q  F  C  L  Q  Q  S  H  W  R  V  K  K  V  I  D  Q  K  F  I  I  I  G  L  V  V  G  H  F  Q  G  Y  F  R  P  E  I  T  C  C  F  N  A  F  L  K  M  S  M  P  C  *  M  P  K  N  R  N  G  K  A  L  Y  K  M  Q  K  N  G  C  K  I  S  W  K  S  C  T  P  R  P  D  A  F  W  C  A  E  G  S  A  *  F  F  I  L  F  H  Q  L  I  F  F  F  *  S  I  W  S  P  T  K  W  L  V  L  M  G  E  R  Y   : A  T  S  K  Y  C  H  S  D  D  M  H  A  F  P  A  S  F  G  L  K  G  D  A  L  S  S  T  S  D  V  S  L  L  K  I  V  T  K  T  H  G  K  I  L  T  :  G  K  Y  L  H  F  G  I  D  N  C  R  Q  D  V  G  T  T  G  I  S  V  *  G  C  M  R  L  P  G  T  R  V  D  C  C  L  L  V  R  K  F  V  G  I  L  L  F  A  F  V  V  P  D  V  F  Y  N  Q  P  V  R  R  K  Q  M  H  S  K  Y  F  *  F  S  H  N  S  N  E  *  K  I  L  I  Y  T  L  H  F </first_frame>
            <second_frame>  T  F  L  G  T  L  S  E  C  V  R  L  F  V  V  Q  C  H  Y  V  F  T  R  V  V  *  E  C  F  N  S  S  M  L  V  Q  Q  S  H  *  R  G  V  V  L  E  P  T  R  T  T  L  I  I  R  S  C  D  Y  * :   T  F  *  L  *  L  F  V  I  V  F  I  *  E  S  V  K  V  C  *  E  R  H  S  Q  V  T  N  G  G  K  S  C  L  H  A  V  L  I  N  *  T  D  C  T  C  E  F  V  C  G  L  H  K  R  Q  *  P  M  G  L  F  I  F  S  L  H  F  R  L  G  *  N  R  G  *  V  W  G  A  K  S  S  W  V  F  V  *  L  L  N  F  V  F  S  K  V  I  G  E  S  R  R  L  L  T  K  N  S  S  S  *  D  W  W  W  V  I  F  K  A  I  L  G  L  K  *  L  V  V  S  M  P  F  *  R  C  P  C  P  V  E  C  P  K  T  E  T  E  K  H  Y  I  K  C  R  K  M  G  V  K  F  H  G  N  R  V  L  L  D  P  M  H  F  G  V  Q  K  V  L  L  N  F  L  F  Y  F  I  S  *  F  F  F  F  E  A  S  G  L  P  Q  N  G  W  C  *  W  E  K  D  M  :  R  H  Q  N  T  A  I  Q  M  I  C  M  L  S  Q  Q  A  L  A  L  K  E  M  L  *  V  L  L  L  T  F  P  C  *  K  L  L  Q  K  L  M  G  R  F  *  R :   A  S  I  C  T  L  E  L  I  I  V  D  K  M  L  V  Q  Q  V  F  L  Y  E  A  V  *  G  Y  L  G  Q  E  L  T  V  V  C  *  *  G  N  L  L  G  F  Y  F  L  H  L  L  F  L  M  Y  F  T  T  S  Q  F  E  G  S  K  C  T  P  N  T  S  S  S  L  T  I  Q  T  N  K  K  Y  *  F  T  H  F  T   </second_frame>
            <third_frame>   L  F  L  G  H  *  A  N  A  *  G  Y  L  *  F  N  V  I  M  F  S  Q  G  L  F  R  S  V  S  T  A  L  C  W  C  N  K  V  I  D  V  E  L  F  L  N  P  L  G  Q  L  *  L  *  E  V  V  I  T   : R  L  F  D  F  D  C  L  L  L  F  S  F  E  N  Q  *  K  S  A  E  N  V  I  V  K  *  L  T  V  A  S  R  A  F  M  Q  F  *  S  I  R  L  I  A  P  V  N  L  S  V  A  C  T  K  G  S  D  R  W  D  F  L  F  S  A  S  I  F  V  *  V  E  T  E  D  E  F  G  V  L  N  P  V  G  C  S  S  S  C  S  I  L  S  S  A  K  S  L  E  S  Q  E  G  Y  *  P  K  I  H  H  H  R  T  G  G  G  S  F  S  R  L  F  *  A  *  N  N  L  L  F  Q  C  L  S  E  D  V  H  A  L  L  N  A  Q  K  Q  K  R  K  S  I  I  *  N  A  E  K  W  V  *  N  F  M  E  I  V  Y  S  *  T  R  C  I  L  V  C  R  R  F  C  L  I  F  Y  F  I  S  S  A  D  F  F  F  L  K  H  L  V  S  H  K  M  A  G  A  D  G  R  K  I  C :   D  I  K  I  L  P  F  R  *  Y  A  C  F  P  S  K  L  W  P  *  R  R  C  S  E  F  Y  F  *  R  F  L  V  E  N  C  Y  K  N  S  W  E  D  F  D   : G  Q  V  F  A  L  W  N  *  *  L  *  T  R  C  W  Y  N  R  Y  F  C  M  R  L  Y  E  A  T  W  D  K  S  *  L  L  F  A  S  K  E  I  C  W  D  F  T  F  C  I  C  C  S  *  C  I  L  Q  P  A  S  S  K  E  A  N  A  L  Q  I  L  L  V  L  S  Q  F  K  R  I  K  N  I  D  L  H  T  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40405" stop="40357"/>
                    <exon start="40128" stop="39992"/>
                    <exon start="39902" stop="39834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIWSPTKWLVLMGERYATSKYCHSDDMHAFPASFGLKGDALSSTSDVSLLKIVTKTHGKILTGKYLHFGIDNCRQDVGTTGISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44358" PGL_stop="43630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44358" e_stop="43630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="44358" e_stop="43630" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44358" stop="43630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44357" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATATTGAAATCACGCACGTCCTTCTGATTAGCAATTTTGATGCTTTTCATTCGTAATGTGTCTCCATCTTTTGATAAGTACCAGCTCAAGAACGAGGCATTTAAATGAAATGTTGGATTATTGAGGGGTGTTTGCGGCCACCTCTTGTAAGCCCAGATCCTATTTTTGATGTTTTGCATTGTTATGCATCTTTTATAGCTTCAACGTTTATATTCCTCCCACTGATGGATATATGTATGTCTAAATGCGAAAAAAACATGACAAACACTTCTTCTCAGGCTGGTTATTCCATTTTGAGGTGTCAATAACACTGTTTATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTCTTGTGTATTGTCTCTTAAGGTCCATTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATGGTAACTTATAAGGGAAGAGCTTTTTTGTTCAAACATTCTAATGAGATGCTCTGCTATCTATTTTTGACGTTTCTTTGTTTGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATGGTAAGATTTTGAAGGTTAAAGTTCTTTGAGTTTTAATTGGTATTATTCATTAAGATAGCTTTCAAACAACTAACCTAGTCTTTGTTCTTGCCATTGTTTACAGGACGGCAAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATAT</gDNA_template>
            <first_frame> E  I  L  K  S  R  T  S  F  *  L  A  I  L  M  L  F  I  R  N  V  S  P  S  F  D  K  Y  Q  L  K  N  E  A  F  K  *  N  V  G  L  L  R  G  V  C  G  H  L  L  *  A  Q  I  L  F  L  M  F  C  I  V  M  H  L  L  *  L  Q  R  L  Y  S  S  H  *  W  I  Y  V  C  L  N  A  K  K  T  *  Q  T  L  L  L  R  L  V  I  P  F  *  G  V  N  N  T  V  Y  I  S  S  V  F  H  L  V  E  T  K  K  D  F  *  G  F  N  P  L  K  C  H  S  C  V  L  S  L  K  V  H  L  C  F  I  W  V  D  Y  S  Q  *  I  M  N  G  N  L  *  G  K  S  F  F  V  Q  T  F  *  *  D  A  L  L  S  I  F  D  V  S  L  F  E  I  V  T  N  T  H  W  R  P  N  G  H  G  K  I  L  K  V  K  V  L  *  V  L  I  G  I  I  H  *  D  S  F  Q  T  T  N  L  V  F  V  L  A  I  V  Y  R  T  A  S  V  C  T  L  E  F  D  D  C  T  Q  Y </first_frame>
            <second_frame>  R  Y  *  N  H  A  R  P  S  D  *  Q  F  *  C  F  S  F  V  M  C  L  H  L  L  I  S  T  S  S  R  T  R  H  L  N  E  M  L  D  Y  *  G  V  F  A  A  T  S  C  K  P  R  S  Y  F  *  C  F  A  L  L  C  I  F  Y  S  F  N  V  Y  I  P  P  T  D  G  Y  M  Y  V  *  M  R  K  K  H  D  K  H  F  F  S  G  W  L  F  H  F  E  V  S  I  T  L  F  I  S  V  L  C  S  I  L  L  K  P  R  R  I  F  E  G  L  T  L  *  S  V  I  L  V  Y  C  L  L  R  S  I  Y  V  L  F  G  L  I  I  A  S  E  L  *  M  V  T  Y  K  G  R  A  F  L  F  K  H  S  N  E  M  L  C  Y  L  F  L  T  F  L  C  L  K  L  L  L  I  L  I  G  G  Q  T  D  M  V  R  F  *  R  L  K  F  F  E  F  *  L  V  L  F  I  K  I  A  F  K  Q  L  T  *  S  L  F  L  P  L  F  T  G  R  Q  V  F  V  P  W  N  L  M  I  V  H  N   </second_frame>
            <third_frame>   D  I  E  I  T  H  V  L  L  I  S  N  F  D  A  F  H  S  *  C  V  S  I  F  *  *  V  P  A  Q  E  R  G  I  *  M  K  C  W  I  I  E  G  C  L  R  P  P  L  V  S  P  D  P  I  F  D  V  L  H  C  Y  A  S  F  I  A  S  T  F  I  F  L  P  L  M  D  I  C  M  S  K  C  E  K  N  M  T  N  T  S  S  Q  A  G  Y  S  I  L  R  C  Q  *  H  C  L  Y  Q  F  C  V  P  S  C  *  N  Q  E  G  F  L  R  V  *  P  F  E  V  S  F  L  C  I  V  S  *  G  P  F  M  F  Y  L  G  *  L  *  P  V  N  Y  E  W  *  L  I  R  E  E  L  F  C  S  N  I  L  M  R  C  S  A  I  Y  F  *  R  F  F  V  *  N  C  Y  *  Y  S  L  E  A  K  R  T  W  *  D  F  E  G  *  S  S  L  S  F  N  W  Y  Y  S  L  R  *  L  S  N  N  *  P  S  L  C  S  C  H  C  L  Q  D  G  K  C  L  Y  L  G  I  *  *  L  Y  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44251" stop="44048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKCWIIEGCLRPPLVSPDPIFDVLHCYASFIASTFIFLPLMDICMSKCEKNMTNTSSQAGYSILRCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="59424" PGL_stop="57774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58940" e_stop="58718"/>
            <exon e_start="58586" e_stop="57774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58940" e_stop="58718" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="58717" i_stop="58587" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="58586" e_stop="57774" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58940" stop="58718"/>
              <exon start="58586" stop="57933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58940" stop="58718"/>
              <exon start="58586" stop="58012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58940" stop="58718"/>
              <exon start="58586" stop="58028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58937" stop="58718"/>
              <exon start="58586" stop="57939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58920" stop="58718"/>
              <exon start="58586" stop="58426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277817" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58918" stop="58718"/>
              <exon start="58586" stop="57949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58918" stop="58718"/>
              <exon start="58586" stop="57949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58918" stop="58718"/>
              <exon start="58586" stop="58329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58915" stop="58718"/>
              <exon start="58586" stop="57969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58915" stop="58718"/>
              <exon start="58586" stop="58044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58914" stop="58718"/>
              <exon start="58586" stop="58087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58914" stop="58718"/>
              <exon start="58586" stop="58170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58913" stop="58718"/>
              <exon start="58586" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58913" stop="58718"/>
              <exon start="58586" stop="57973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58911" stop="58718"/>
              <exon start="58586" stop="58257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58908" stop="58718"/>
              <exon start="58586" stop="58354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58904" stop="58718"/>
              <exon start="58586" stop="58386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58892" stop="58718"/>
              <exon start="58586" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58889" stop="58718"/>
              <exon start="58586" stop="58258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58889" stop="58718"/>
              <exon start="58586" stop="58285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58856" stop="58718"/>
              <exon start="58586" stop="57774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58788" stop="58718"/>
              <exon start="58586" stop="58122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58778" stop="58718"/>
              <exon start="58586" stop="58008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58547" stop="58004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58541" stop="57972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203533" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58493" stop="57975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58370" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAG : ATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAAATTTGCCGAGTTACTTTTCTAATGATCATTAATGGCATTGTATAATCATTGATTGGTCGACGATAGTCAATTGCCTGTATCACAAATTCAAGATTTTGTGTGAGCATTACACGAACAATTCCATTGAAGAAATATATTTTTCAAGTTTCATAATTG</gDNA_template>
            <first_frame> N  D  Q  R  N  G  Y  *  D  I  F  E  N  *  E  D  D  G  N  R  R  S  *  E  P  R  R  C  A  A  T  N  R  G  F  Q  G  *  G  A  G  F  G  D  R  E  G  C  *  G  E  E  T  *  G  S  Q  R  E  E  A  *  I  C  Q  G  C  Y  S  S  S  L  F  S   : D  D  *  G  G  S  V  V  S  E  R  E  R  W  I  E  S  V  C  S  C  *  I  H  G  R  Q  T  *  G  *  I  T  S  K  F  Q  E  N  S  R  S  S  I  E  E  F  C  S  K  G  E  A  N  Q  N  Q  G  F  I  Q  T  I  *  G  W  K  E  G  D  Y  N  K  N  V  Y  Q  K  A  P  Q  G  R  F  *  E  E  T  *  K  H  Q  G  H  F  N  C  S  E  E  N  R  G  A  E  E  S  K  S  D  A  K  T  E  E  G  W  S  Q  E  D  K  E  V  Y  S  G  E  G  K  A  T  K  V  Y  Q  V  S  C  C  *  K  G  Q  E  N  C  S  L  S  M  A  V  G  *  Y  R  L  Y  I  R  G  I  M  V  C  C  L  *  L  C  E  *  E  K  *  S  L  A  F  T  F  S  H  L  V  R  *  C  R  S  G  L  L  K  F  G  *  *  R  L  C  I  S  A  N  *  G  V  V  L  S  I  I  I  F  F  L  S  N  L  P  S  Y  F  S  N  D  H  *  W  H  C  I  I  I  D  W  S  T  I  V  N  C  L  Y  H  K  F  K  I  L  C  E  H  Y  T  N  N  S  I  E  E  I  Y  F  S  S  F  I  I  </first_frame>
            <second_frame>  M  I  R  E  T  V  I  E  I  F  L  R  I  E  K  M  T  A  I  G  E  V  E  N  P  A  V  V  Q  R  P  T  E  A  S  K  V  K  E  Q  A  S  A  T  E  K  A  V  K  E  K  K  P  R  A  P  K  E  K  K  P  K  S  A  K  A  V  T  H  P  P  Y  F  Q  :  M  I  K  E  A  L  L  S  L  N  E  K  G  G  S  S  P  Y  A  V  A  K  Y  M  E  D  K  H  K  D  E  L  P  A  N  F  R  K  I  L  G  L  Q  L  K  N  S  A  A  K  G  K  L  I  K  I  K  A  S  Y  K  L  S  E  A  G  K  K  E  T  T  T  K  T  S  T  K  K  L  P  K  A  D  S  K  K  K  P  R  S  T  R  A  T  S  T  A  A  K  K  T  E  V  P  K  K  A  K  A  T  P  K  P  K  K  V  G  A  K  R  T  R  K  S  T  P  A  K  A  K  Q  P  K  S  I  K  S  P  A  A  K  R  A  K  K  I  A  V  *  A  W  R  W  D  N  T  D  C  I  *  E  E  *  W  F  A  A  C  S  S  V  N  R  K  N  E  A  *  L  L  L  S  V  I  *  F  G  S  V  G  R  V  C  *  S  L  V  N  E  G  S  V  S  L  Q  I  K  A  L  F  C  Q  *  S  S  F  F  F  Q  I  C  R  V  T  F  L  M  I  I  N  G  I  V  *  S  L  I  G  R  R  *  S  I  A  C  I  T  N  S  R  F  C  V  S  I  T  R  T  I  P  L  K  K  Y  I  F  Q  V  S  *  L </second_frame>
            <third_frame>   *  S  E  K  R  L  L  R  Y  F  *  E  L  R  R  *  R  Q  S  E  K  L  R  T  P  P  L  C  S  D  Q  Q  R  L  P  R  L  R  S  R  L  R  R  Q  R  R  L  L  R  R  R  N  L  G  L  P  K  R  R  S  L  N  L  P  R  L  L  L  I  L  L  I  F  R :   *  L  R  R  L  C  C  L  *  T  R  K  V  D  R  V  R  M  Q  L  L  N  T  W  K  T  N  I  R  M  N  Y  Q  Q  I  S  G  K  F  *  V  F  N  *  R  I  L  Q  Q  R  G  S  *  S  K  S  R  L  H  T  N  Y  L  R  L  E  R  R  R  L  Q  Q  K  R  L  P  K  S  S  P  R  P  I  L  R  R  N  L  E  A  P  G  P  L  Q  L  Q  R  R  K  Q  R  C  R  R  K  Q  K  R  R  Q  N  R  R  R  L  E  P  R  G  Q  G  S  L  L  R  R  R  Q  S  N  Q  S  L  S  S  L  L  L  L  K  G  P  R  K  L  Q  F  K  H  G  G  G  I  I  Q  T  V  Y  K  R  N  N  G  L  L  L  V  A  L  *  I  G  K  M  K  L  S  F  Y  F  Q  S  S  S  S  V  V  *  V  G  F  A  E  V  W  L  M  K  A  L  Y  L  C  K  L  R  R  C  S  V  N  N  H  L  F  S  F  K  F  A  E  L  L  F  *  *  S  L  M  A  L  Y  N  H  *  L  V  D  D  S  Q  L  P  V  S  Q  I  Q  D  F  V  *  A  L  H  E  Q  F  H  *  R  N  I  F  F  K  F  H  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58939" stop="58718"/>
                    <exon start="58586" stop="58140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIRETVIEIFLRIEKMTAIGEVENPAVVQRPTEASKVKEQASATEKAVKEKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLSLNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRATSTAAKKTEVPKKAKATPKPKKVGAKRTRKSTPAKAKQPKSIKSPAAKRAKKIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59424" e_stop="57930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="59424" e_stop="57930" e_length="1495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59424" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58915" stop="58361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58902" stop="58430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58722" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58547" stop="58004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58541" stop="57972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203533" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58493" stop="57975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58370" stop="57930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAGAGAGCATAAAGTTAAAAATAAATCAGCAAAAGAAAAACAAATGATTACTCTATTTCTCTAATGACTTCAAAATACATGCAAATGACCTTCATTTTTCCTATTTCCAGCCACATTAGATTCAGCATTTTCTTAACCTCAATCCCCAAAAATGTTCCATGACAAGATTCAAACTTTATGATTAAAATTTCAATCCCCAAAGTTTAAATAGAAAACACATCCCCTAATACACACACAATAATAATGAAGTAAAGAAAAACAGCTCACAGTATTTCTCTTCTATACTAGTCTAGATAAGAATAACAGCTCTTAATCAAAATACACAACTAAATCAACGTCTAAATAACATCCACGTGTGAGCATCTAATTAATTCTTCAGAAAACTTCGATCCGTGTCACCTTAAATTGACCAATCAAAATGCAGAGAATTGTGAAACCAGGATCGTTACTCTTATTATAAATTGCGTAAGTTGCATTACAGAATGATCAGAGAAACGGTTATTGAGATATTTTTGAGAATTGAGAAGATGACGGCAATCGGAGAAGTTGAGAACCCCGCCGTTGTGCAGCGACCAACAGAGGCTTCCAAGGTTAAGGAGCAGGCTTCGGCGACAGAGAAGGCTGTTAAGGAGAAGAAACCTAGGGCTCCCAAAGAGAAGAAGCCTAAATCTGCCAAGGCTGTTACTCATCCTCCTTATTTTCAGGTATTTTTTATCAATTCATCGATAGATAAAGCTGTGCTTTTCATTATTATTTTGCCGATGTTCATCGTGTATAGATCATATAACTTGCAAATTTCAACTTGATTAAGTTTTTTGGTATGGAATTCCTGCAGATGATTAAGGAGGCTCTGTTGTCTCTGAACGAGAAAGGTGGATCGAGTCCGTATGCAGTTGCTAAATACATGGAAGACAAACATAAGGATGAATTACCAGCAAATTTCAGGAAAATTCTAGGTCTTCAATTGAAGAATTCTGCAGCAAAGGGGAAGCTAATCAAAATCAAGGCTTCATACAAACTATCTGAGGCTGGAAAGAAGGAGACTACAACAAAAACGTCTACCAAAAAGCTCCCCAAGGCCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAAGAAAGCAAAAGCGACGCCAAAACCGAAGAAGGTTGGAGCCAAGAGGACAAGGAAGTCTACTCCGGCGAAGGCAAAGCAACCAAAGTCTATCAAGTCTCCTGCTGCTAAAAGGGCCAAGAAAATTGCAGTTTAAGCATGGCGGTGGGATAATACAGACTGTATATAAGAGGAATAATGGTTTGCTGCTTGTAGCTCTGTGAATAGGAAAAATGAAGCTTAGCTTTTACTTTCAGTCATCTAGTTCGGTAGTGTAGGTCGGGTTTGCTGAAGTTTGGTTAATGAAGGCTCTGTATCTCTGCAAATTAAGGCGTTGTTCTGTCAATAATCATCTTTTTTCTTTCAA</gDNA_template>
            <first_frame> K  E  R  A  *  S  *  K  *  I  S  K  R  K  T  N  D  Y  S  I  S  L  M  T  S  K  Y  M  Q  M  T  F  I  F  P  I  S  S  H  I  R  F  S  I  F  L  T  S  I  P  K  N  V  P  *  Q  D  S  N  F  M  I  K  I  S  I  P  K  V  *  I  E  N  T  S  P  N  T  H  T  I  I  M  K  *  R  K  T  A  H  S  I  S  L  L  Y  *  S  R  *  E  *  Q  L  L  I  K  I  H  N  *  I  N  V  *  I  T  S  T  C  E  H  L  I  N  S  S  E  N  F  D  P  C  H  L  K  L  T  N  Q  N  A  E  N  C  E  T  R  I  V  T  L  I  I  N  C  V  S  C  I  T  E  *  S  E  K  R  L  L  R  Y  F  *  E  L  R  R  *  R  Q  S  E  K  L  R  T  P  P  L  C  S  D  Q  Q  R  L  P  R  L  R  S  R  L  R  R  Q  R  R  L  L  R  R  R  N  L  G  L  P  K  R  R  S  L  N  L  P  R  L  L  L  I  L  L  I  F  R  Y  F  L  S  I  H  R  *  I  K  L  C  F  S  L  L  F  C  R  C  S  S  C  I  D  H  I  T  C  K  F  Q  L  D  *  V  F  W  Y  G  I  P  A  D  D  *  G  G  S  V  V  S  E  R  E  R  W  I  E  S  V  C  S  C  *  I  H  G  R  Q  T  *  G  *  I  T  S  K  F  Q  E  N  S  R  S  S  I  E  E  F  C  S  K  G  E  A  N  Q  N  Q  G  F  I  Q  T  I  *  G  W  K  E  G  D  Y  N  K  N  V  Y  Q  K  A  P  Q  G  R  F  *  E  E  T  *  K  H  Q  G  H  F  N  C  S  E  E  N  R  G  A  E  E  S  K  S  D  A  K  T  E  E  G  W  S  Q  E  D  K  E  V  Y  S  G  E  G  K  A  T  K  V  Y  Q  V  S  C  C  *  K  G  Q  E  N  C  S  L  S  M  A  V  G  *  Y  R  L  Y  I  R  G  I  M  V  C  C  L  *  L  C  E  *  E  K  *  S  L  A  F  T  F  S  H  L  V  R  *  C  R  S  G  L  L  K  F  G  *  *  R  L  C  I  S  A  N  *  G  V  V  L  S  I  I  I  F  F  L  S  </first_frame>
            <second_frame>  R  R  E  H  K  V  K  N  K  S  A  K  E  K  Q  M  I  T  L  F  L  *  *  L  Q  N  T  C  K  *  P  S  F  F  L  F  P  A  T  L  D  S  A  F  S  *  P  Q  S  P  K  M  F  H  D  K  I  Q  T  L  *  L  K  F  Q  S  P  K  F  K  *  K  T  H  P  L  I  H  T  Q  *  *  *  S  K  E  K  Q  L  T  V  F  L  F  Y  T  S  L  D  K  N  N  S  S  *  S  K  Y  T  T  K  S  T  S  K  *  H  P  R  V  S  I  *  L  I  L  Q  K  T  S  I  R  V  T  L  N  *  P  I  K  M  Q  R  I  V  K  P  G  S  L  L  L  L  *  I  A  *  V  A  L  Q  N  D  Q  R  N  G  Y  *  D  I  F  E  N  *  E  D  D  G  N  R  R  S  *  E  P  R  R  C  A  A  T  N  R  G  F  Q  G  *  G  A  G  F  G  D  R  E  G  C  *  G  E  E  T  *  G  S  Q  R  E  E  A  *  I  C  Q  G  C  Y  S  S  S  L  F  S  G  I  F  Y  Q  F  I  D  R  *  S  C  A  F  H  Y  Y  F  A  D  V  H  R  V  *  I  I  *  L  A  N  F  N  L  I  K  F  F  G  M  E  F  L  Q  M  I  K  E  A  L  L  S  L  N  E  K  G  G  S  S  P  Y  A  V  A  K  Y  M  E  D  K  H  K  D  E  L  P  A  N  F  R  K  I  L  G  L  Q  L  K  N  S  A  A  K  G  K  L  I  K  I  K  A  S  Y  K  L  S  E  A  G  K  K  E  T  T  T  K  T  S  T  K  K  L  P  K  A  D  S  K  K  K  P  R  S  T  R  A  T  S  T  A  A  K  K  T  E  V  P  K  K  A  K  A  T  P  K  P  K  K  V  G  A  K  R  T  R  K  S  T  P  A  K  A  K  Q  P  K  S  I  K  S  P  A  A  K  R  A  K  K  I  A  V  *  A  W  R  W  D  N  T  D  C  I  *  E  E  *  W  F  A  A  C  S  S  V  N  R  K  N  E  A  *  L  L  L  S  V  I  *  F  G  S  V  G  R  V  C  *  S  L  V  N  E  G  S  V  S  L  Q  I  K  A  L  F  C  Q  *  S  S  F  F  F  Q </second_frame>
            <third_frame>   G  E  S  I  K  L  K  I  N  Q  Q  K  K  N  K  *  L  L  Y  F  S  N  D  F  K  I  H  A  N  D  L  H  F  S  Y  F  Q  P  H  *  I  Q  H  F  L  N  L  N  P  Q  K  C  S  M  T  R  F  K  L  Y  D  *  N  F  N  P  Q  S  L  N  R  K  H  I  P  *  Y  T  H  N  N  N  E  V  K  K  N  S  S  Q  Y  F  S  S  I  L  V  *  I  R  I  T  A  L  N  Q  N  T  Q  L  N  Q  R  L  N  N  I  H  V  *  A  S  N  *  F  F  R  K  L  R  S  V  S  P  *  I  D  Q  S  K  C  R  E  L  *  N  Q  D  R  Y  S  Y  Y  K  L  R  K  L  H  Y  R  M  I  R  E  T  V  I  E  I  F  L  R  I  E  K  M  T  A  I  G  E  V  E  N  P  A  V  V  Q  R  P  T  E  A  S  K  V  K  E  Q  A  S  A  T  E  K  A  V  K  E  K  K  P  R  A  P  K  E  K  K  P  K  S  A  K  A  V  T  H  P  P  Y  F  Q  V  F  F  I  N  S  S  I  D  K  A  V  L  F  I  I  I  L  P  M  F  I  V  Y  R  S  Y  N  L  Q  I  S  T  *  L  S  F  L  V  W  N  S  C  R  *  L  R  R  L  C  C  L  *  T  R  K  V  D  R  V  R  M  Q  L  L  N  T  W  K  T  N  I  R  M  N  Y  Q  Q  I  S  G  K  F  *  V  F  N  *  R  I  L  Q  Q  R  G  S  *  S  K  S  R  L  H  T  N  Y  L  R  L  E  R  R  R  L  Q  Q  K  R  L  P  K  S  S  P  R  P  I  L  R  R  N  L  E  A  P  G  P  L  Q  L  Q  R  R  K  Q  R  C  R  R  K  Q  K  R  R  Q  N  R  R  R  L  E  P  R  G  Q  G  S  L  L  R  R  R  Q  S  N  Q  S  L  S  S  L  L  L  L  K  G  P  R  K  L  Q  F  K  H  G  G  G  I  I  Q  T  V  Y  K  R  N  N  G  L  L  L  V  A  L  *  I  G  K  M  K  L  S  F  Y  F  Q  S  S  S  S  V  V  *  V  G  F  A  E  V  W  L  M  K  A  L  Y  L  C  K  L  R  R  C  S  V  N  N  H  L  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58634" stop="58140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANFNLIKFFGMEFLQMIKEALLSLNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRATSTAAKKTEVPKKAKATPKPKKVGAKRTRKSTPAKAKQPKSIKSPAAKRAKKIAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58987" stop="58616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQDRYSYYKLRKLHYRMIRETVIEIFLRIEKMTAIGEVENPAVVQRPTEASKVKEQASATEKAVKEKKPRAPKEKKPKSAKAVTHPPYFQVFFINSSIDKAVLFIIILPMFIVYRSYNLQIST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62296" PGL_stop="66833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62296" e_stop="62436"/>
            <exon e_start="65145" e_stop="65198"/>
            <exon e_start="65580" e_stop="66730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62296" e_stop="62436" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65145" e_stop="65198" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.938">
            <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="65580" e_stop="66730" e_length="1151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62296" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62302" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62303" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62350" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62378" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62379" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62394" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62403" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65790" stop="66292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65800" stop="66324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66060" stop="66730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAGAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA : AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG : GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCAC</gDNA_template>
            <first_frame> K  E  E  K  E  K  R  K  Q  R  G  T  D  K  K  K  R  Q  Q  K  E  A  F  G  I  E  S  L  T  S  A  S  V  L  I  N  F  L  A  *  L  F  S  P  L  P  L  :  K  R  P  H  S  R  W  V  F  S  I  C  F  P  P  L  M  M  :  D  H  N  N  F  T  I  K  T  Y  M  A  I  M  A  E  R  D  A  A  I  R  E  R  N  M  A  L  E  E  R  K  R  A  F  A  E  R  D  M  A  M  L  Q  R  D  A  A  L  A  E  R  N  A  L  I  Q  E  R  N  D  A  I  A  A  L  R  L  Q  D  S  S  T  N  D  N  N  M  V  P  D  S  P  G  N  G  T  E  S  G  A  K  H  I  Y  N  Q  Q  Q  M  Y  R  T  T  A  D  A  A  H  G  S  T  E  D  P  A  A  G  Y  L  K  D  T  D  T  S  E  A  K  I  P  K  K  V  K  R  P  K  E  S  R  H  N  K  Q  A  K  I  P  R  V  G  K  I  S  T  D  S  L  S  M  Q  V  I  A  T  T  S  D  D  W  V  N  L  Q  E  M  D  S  D  K  E  G  D  T  Q  L  T  S  W  K  D  N  L  G  L  K  I  N  F  D  D  S  A  M  P  V  P  V  C  S  C  T  G  T  P  Q  P  C  Y  K  W  G  H  G  G  W  Q  S  A  C  C  T  T  T  I  S  M  Y  P  L  P  Q  I  S  N  K  R  Y  S  R  V  G  G  R  K  M  S  G  G  A  F  S  K  L  L  N  R  L  A  A  Q  G  Y  D  L  S  I  P  L  D  L  K  D  H  W  A  K  H  G  T  N  R  Y  S  T  L  K  *  L  L  C  A  C  W  I  G  T  S  Q  Y  R  E  G  I  V  G  K  C  V  L  W  M  K  E  S  V  L  *  Y  C  A  G  D  I  P  L  I  A  I  H  S  H  F  L  S  S  V  S  V  S  E  F  Q  F  I  F  I  R  T  A  T  Y  H  V  L  Y  F  C  F  L  Q  C  T  F  N  E  Y  G  D  L  G  V   </first_frame>
            <second_frame>  K  K  K  K  K  K  E  N  K  E  E  Q  I  K  K  K  D  N  K  K  R  L  L  A  S  N  L  S  P  L  H  R  F  *  S  I  F  S  L  S  S  S  P  L  S  L  * :   N  G  H  I  Q  D  G  F  L  A  S  A  F  P  P  *  *  W :   T  T  I  T  L  L  *  R  L  T  W  P  S  W  L  R  G  M  L  P  S  V  N  G  I  W  H  *  R  R  E  R  E  L  L  Q  S  E  T  W  Q  C  F  R  E  M  Q  H  L  Q  S  V  M  L  *  F  K  R  G  T  M  P  L  L  L  F  D  C  R  T  A  L  Q  M  T  T  I  W  F  Q  I  H  Q  E  M  E  L  K  V  V  Q  S  T  F  I  T  N  S  K  C  I  E  P  Q  L  M  L  L  M  V  Q  R  K  I  P  Q  L  A  T  *  K  T  Q  I  L  L  K  Q  R  F  L  K  R  S  S  D  L  K  R  A  D  T  I  S  K  L  R  F  Q  E  W  V  K  L  A  Q  T  V  *  A  C  R  S  *  P  Q  H  Q  M  I  G  *  I  C  K  R  W  I  V  T  R  K  E  I  H  S  S  H  H  G  K  I  I  W  G  *  K  S  I  L  M  T  L  L  C  Q  C  L  F  A  P  V  L  G  L  H  S  H  A  I  N  G  V  M  V  G  G  S  Q  L  A  A  Q  L  P  Y  L  C  I  H  Y  L  K  Y  Q  T  N  A  I  P  V  W  V  E  E  R  *  V  V  V  P  S  V  N  C  L  I  V  L  L  L  K  V  M  T  C  L  F  H  L  T  *  R  I  I  G  L  N  M  A  Q  T  A  T  A  H  *  N  S  F  C  V  H  V  G  L  G  P  H  N  I  E  K  A  L  S  E  N  V  C  C  G  *  K  K  V  Y  F  N  T  V  Q  E  I  Y  H  *  *  L  F  I  H  I  F  *  A  L  S  L  S  Q  S  S  N  S  S  L  S  E  R  P  H  I  M  Y  C  T  F  A  F  F  N  V  R  L  M  N  M  V  I  W  V  S  </second_frame>
            <third_frame>   R  R  K  R  K  K  K  T  K  R  N  R  *  K  K  K  T  T  K  R  G  F  W  H  R  I  S  H  L  C  I  G  S  N  Q  F  S  R  L  A  L  L  P  S  P  S   : K  T  A  T  F  K  M  G  F  *  H  L  L  S  P  L  N  D   : G  P  Q  *  L  Y  Y  K  D  L  H  G  H  H  G  *  E  G  C  C  H  P  *  T  E  Y  G  T  R  G  E  K  E  S  F  C  R  A  R  H  G  N  A  S  E  R  C  S  T  C  R  A  *  C  F  D  S  R  E  E  R  C  H  C  C  S  S  I  A  G  Q  L  Y  K  *  Q  Q  Y  G  S  R  F  T  R  K  W  N  *  K  W  C  K  A  H  L  *  P  T  A  N  V  *  N  H  S  *  C  C  S  W  F  N  G  R  S  R  S  W  L  L  E  R  H  R  Y  F  *  S  K  D  S  *  K  G  Q  A  T  *  R  E  Q  T  Q  *  A  S  *  D  S  K  S  G  *  N  *  H  R  Q  F  K  H  A  G  H  S  H  N  I  R  *  L  G  K  S  A  R  D  G  *  *  Q  G  R  R  Y  T  A  H  I  M  E  R  *  F  G  V  E  N  Q  F  *  *  L  C  Y  A  S  A  C  L  L  L  Y  W  D  S  T  A  M  L  *  M  G  S  W  W  V  A  V  S  L  L  H  N  Y  H  I  Y  V  S  I  T  S  N  I  K  Q  T  L  F  P  C  G  W  K  K  D  E  W  W  C  L  Q  *  I  A  *  S  S  C  C  S  R  L  *  P  V  Y  S  T  *  P  E  G  S  L  G  *  T  W  H  K  P  L  Q  H  I  E  I  A  S  V  C  M  L  D  W  D  L  T  I  *  R  R  H  C  R  K  M  C  V  V  D  E  R  K  C  T  L  I  L  C  R  R  Y  T  T  N  S  Y  S  F  T  F  F  E  L  C  L  C  L  R  V  P  I  H  L  Y  Q  N  G  H  I  S  C  T  V  L  L  L  S  S  M  Y  V  *  *  I  W  *  F  G  C  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62416" stop="62436"/>
                    <exon start="65145" stop="65198"/>
                    <exon start="65580" stop="66476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSPLPLKRPHSRWVFSICFPPLMMDHNNFTIKTYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNDNNMVPDSPGNGTESGAKHIYNQQQMYRTTADAAHGSTEDPAAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKISTDSLSMQVIATTSDDWVNLQEMDSDKEGDTQLTSWKDNLGLKINFDDSAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIPLDLKDHWAKHGTNRYSTLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62296" e_stop="62436"/>
            <exon e_start="65145" e_stop="65198"/>
            <exon e_start="65580" e_stop="66729"/>
            <exon e_start="66825" e_stop="66833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.730" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62296" e_stop="62436" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62437" i_stop="65144" i_length="2708"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65145" e_stop="65198" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.938">
            <gDNA_intron_boundary i_start="65199" i_stop="65579" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="65580" e_stop="66729" e_length="1150"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.730">
            <gDNA_intron_boundary i_start="66730" i_stop="66824" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66825" e_stop="66833" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62296" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62302" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62303" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62350" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62378" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="65978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62379" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62394" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62403" stop="62436"/>
              <exon start="65145" stop="65198"/>
              <exon start="65580" stop="66062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65790" stop="66292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65800" stop="66324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66229" stop="66729"/>
              <exon start="66825" stop="66833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAGAAAAAGAAAAAAGAAAACAAAGAGGAACAGATAAAAAAAAAAGACAACAAAAAGAGGCTTTTGGCATCGAATCTCTCACCTCTGCATCGGTTCTAATCAATTTTCTCGCTTAGCTCTTCTCCCCTCTCCCTCTA : AAACGGCCACATTCAAGATGGGTTTTTAGCATCTGCTTTCCCCCCTTAATGATG : GACCACAATAACTTTACTATAAAGACTTACATGGCCATCATGGCTGAGAGGGATGCTGCCATCCGTGAACGGAATATGGCACTAGAGGAGAGAAAGAGAGCTTTTGCAGAGCGAGACATGGCAATGCTTCAGAGAGATGCAGCACTTGCAGAGCGTAATGCTTTGATTCAAGAGAGGAACGATGCCATTGCTGCTCTTCGATTGCAGGACAGCTCTACAAATGACAACAATATGGTTCCAGATTCACCAGGAAATGGAACTGAAAGTGGTGCAAAGCACATTTATAACCAACAGCAAATGTATAGAACCACAGCTGATGCTGCTCATGGTTCAACGGAAGATCCCGCAGCTGGCTACTTGAAAGACACAGATACTTCTGAAGCAAAGATTCCTAAAAAGGTCAAGCGACCTAAAGAGAGCAGACACAATAAGCAAGCTAAGATTCCAAGAGTGGGTAAAATTAGCACAGACAGTTTAAGCATGCAGGTCATAGCCACAACATCAGATGATTGGGTAAATCTGCAAGAGATGGATAGTGACAAGGAAGGAGATACACAGCTCACATCATGGAAAGATAATTTGGGGTTGAAAATCAATTTTGATGACTCTGCTATGCCAGTGCCTGTTTGCTCCTGTACTGGGACTCCACAGCCATGCTATAAATGGGGTCATGGTGGGTGGCAGTCAGCTTGCTGCACAACTACCATATCTATGTATCCATTACCTCAAATATCAAACAAACGCTATTCCCGTGTGGGTGGAAGAAAGATGAGTGGTGGTGCCTTCAGTAAATTGCTTAATCGTCTTGCTGCTCAAGGTTATGACCTGTCTATTCCACTTGACCTGAAGGATCATTGGGCTAAACATGGCACAAACCGCTACAGCACATTGAAATAGCTTCTGTGTGCATGTTGGATTGGGACCTCACAATATAGAGAAGGCATTGTCGGAAAATGTGTGTTGTGGATGAAAGAAAGTGTACTTTAATACTGTGCAGGAGATATACCACTAATAGCTATTCATTCACATTTTTTGAGCTCTGTCTCTGTCTCAGAGTTCCAATTCATCTTTATCAGAACGGCCACATATCATGTACTGTACTTTTGCTTTCTTCAATGTACGTTTAATGAATATGGTGATTTGGGTGTCA : AAAAAAAAA</gDNA_template>
            <first_frame> K  E  E  K  E  K  R  K  Q  R  G  T  D  K  K  K  R  Q  Q  K  E  A  F  G  I  E  S  L  T  S  A  S  V  L  I  N  F  L  A  *  L  F  S  P  L  P  L  :  K  R  P  H  S  R  W  V  F  S  I  C  F  P  P  L  M  M  :  D  H  N  N  F  T  I  K  T  Y  M  A  I  M  A  E  R  D  A  A  I  R  E  R  N  M  A  L  E  E  R  K  R  A  F  A  E  R  D  M  A  M  L  Q  R  D  A  A  L  A  E  R  N  A  L  I  Q  E  R  N  D  A  I  A  A  L  R  L  Q  D  S  S  T  N  D  N  N  M  V  P  D  S  P  G  N  G  T  E  S  G  A  K  H  I  Y  N  Q  Q  Q  M  Y  R  T  T  A  D  A  A  H  G  S  T  E  D  P  A  A  G  Y  L  K  D  T  D  T  S  E  A  K  I  P  K  K  V  K  R  P  K  E  S  R  H  N  K  Q  A  K  I  P  R  V  G  K  I  S  T  D  S  L  S  M  Q  V  I  A  T  T  S  D  D  W  V  N  L  Q  E  M  D  S  D  K  E  G  D  T  Q  L  T  S  W  K  D  N  L  G  L  K  I  N  F  D  D  S  A  M  P  V  P  V  C  S  C  T  G  T  P  Q  P  C  Y  K  W  G  H  G  G  W  Q  S  A  C  C  T  T  T  I  S  M  Y  P  L  P  Q  I  S  N  K  R  Y  S  R  V  G  G  R  K  M  S  G  G  A  F  S  K  L  L  N  R  L  A  A  Q  G  Y  D  L  S  I  P  L  D  L  K  D  H  W  A  K  H  G  T  N  R  Y  S  T  L  K  *  L  L  C  A  C  W  I  G  T  S  Q  Y  R  E  G  I  V  G  K  C  V  L  W  M  K  E  S  V  L  *  Y  C  A  G  D  I  P  L  I  A  I  H  S  H  F  L  S  S  V  S  V  S  E  F  Q  F  I  F  I  R  T  A  T  Y  H  V  L  Y  F  C  F  L  Q  C  T  F  N  E  Y  G  D  L  G  V   : K  K  K  </first_frame>
            <second_frame>  K  K  K  K  K  K  E  N  K  E  E  Q  I  K  K  K  D  N  K  K  R  L  L  A  S  N  L  S  P  L  H  R  F  *  S  I  F  S  L  S  S  S  P  L  S  L  * :   N  G  H  I  Q  D  G  F  L  A  S  A  F  P  P  *  *  W :   T  T  I  T  L  L  *  R  L  T  W  P  S  W  L  R  G  M  L  P  S  V  N  G  I  W  H  *  R  R  E  R  E  L  L  Q  S  E  T  W  Q  C  F  R  E  M  Q  H  L  Q  S  V  M  L  *  F  K  R  G  T  M  P  L  L  L  F  D  C  R  T  A  L  Q  M  T  T  I  W  F  Q  I  H  Q  E  M  E  L  K  V  V  Q  S  T  F  I  T  N  S  K  C  I  E  P  Q  L  M  L  L  M  V  Q  R  K  I  P  Q  L  A  T  *  K  T  Q  I  L  L  K  Q  R  F  L  K  R  S  S  D  L  K  R  A  D  T  I  S  K  L  R  F  Q  E  W  V  K  L  A  Q  T  V  *  A  C  R  S  *  P  Q  H  Q  M  I  G  *  I  C  K  R  W  I  V  T  R  K  E  I  H  S  S  H  H  G  K  I  I  W  G  *  K  S  I  L  M  T  L  L  C  Q  C  L  F  A  P  V  L  G  L  H  S  H  A  I  N  G  V  M  V  G  G  S  Q  L  A  A  Q  L  P  Y  L  C  I  H  Y  L  K  Y  Q  T  N  A  I  P  V  W  V  E  E  R  *  V  V  V  P  S  V  N  C  L  I  V  L  L  L  K  V  M  T  C  L  F  H  L  T  *  R  I  I  G  L  N  M  A  Q  T  A  T  A  H  *  N  S  F  C  V  H  V  G  L  G  P  H  N  I  E  K  A  L  S  E  N  V  C  C  G  *  K  K  V  Y  F  N  T  V  Q  E  I  Y  H  *  *  L  F  I  H  I  F  *  A  L  S  L  S  Q  S  S  N  S  S  L  S  E  R  P  H  I  M  Y  C  T  F  A  F  F  N  V  R  L  M  N  M  V  I  W  V  S  :  K  K  K </second_frame>
            <third_frame>   R  R  K  R  K  K  K  T  K  R  N  R  *  K  K  K  T  T  K  R  G  F  W  H  R  I  S  H  L  C  I  G  S  N  Q  F  S  R  L  A  L  L  P  S  P  S   : K  T  A  T  F  K  M  G  F  *  H  L  L  S  P  L  N  D   : G  P  Q  *  L  Y  Y  K  D  L  H  G  H  H  G  *  E  G  C  C  H  P  *  T  E  Y  G  T  R  G  E  K  E  S  F  C  R  A  R  H  G  N  A  S  E  R  C  S  T  C  R  A  *  C  F  D  S  R  E  E  R  C  H  C  C  S  S  I  A  G  Q  L  Y  K  *  Q  Q  Y  G  S  R  F  T  R  K  W  N  *  K  W  C  K  A  H  L  *  P  T  A  N  V  *  N  H  S  *  C  C  S  W  F  N  G  R  S  R  S  W  L  L  E  R  H  R  Y  F  *  S  K  D  S  *  K  G  Q  A  T  *  R  E  Q  T  Q  *  A  S  *  D  S  K  S  G  *  N  *  H  R  Q  F  K  H  A  G  H  S  H  N  I  R  *  L  G  K  S  A  R  D  G  *  *  Q  G  R  R  Y  T  A  H  I  M  E  R  *  F  G  V  E  N  Q  F  *  *  L  C  Y  A  S  A  C  L  L  L  Y  W  D  S  T  A  M  L  *  M  G  S  W  W  V  A  V  S  L  L  H  N  Y  H  I  Y  V  S  I  T  S  N  I  K  Q  T  L  F  P  C  G  W  K  K  D  E  W  W  C  L  Q  *  I  A  *  S  S  C  C  S  R  L  *  P  V  Y  S  T  *  P  E  G  S  L  G  *  T  W  H  K  P  L  Q  H  I  E  I  A  S  V  C  M  L  D  W  D  L  T  I  *  R  R  H  C  R  K  M  C  V  V  D  E  R  K  C  T  L  I  L  C  R  R  Y  T  T  N  S  Y  S  F  T  F  F  E  L  C  L  C  L  R  V  P  I  H  L  Y  Q  N  G  H  I  S  C  T  V  L  L  L  S  S  M  Y  V  *  *  I  W  *  F  G  C  Q :   K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62416" stop="62436"/>
                    <exon start="65145" stop="65198"/>
                    <exon start="65580" stop="66476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSPLPLKRPHSRWVFSICFPPLMMDHNNFTIKTYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNDNNMVPDSPGNGTESGAKHIYNQQQMYRTTADAAHGSTEDPAAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKISTDSLSMQVIATTSDDWVNLQEMDSDKEGDTQLTSWKDNLGLKINFDDSAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIPLDLKDHWAKHGTNRYSTLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="67092" PGL_stop="73516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67092" e_stop="67281"/>
            <exon e_start="67374" e_stop="67457"/>
            <exon e_start="67544" e_stop="67628"/>
            <exon e_start="71689" e_stop="71777"/>
            <exon e_start="72904" e_stop="73015"/>
            <exon e_start="73204" e_stop="73516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67092" e_stop="67281" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67282" i_stop="67373" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67374" e_stop="67457" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.882">
            <gDNA_intron_boundary i_start="67458" i_stop="67543" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67544" e_stop="67628" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67629" i_stop="71688" i_length="4060"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71689" e_stop="71777" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71778" i_stop="72903" i_length="1126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72904" e_stop="73015" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73016" i_stop="73203" i_length="188"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="73204" e_stop="73516" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67092" stop="67281"/>
              <exon start="67374" stop="67457"/>
              <exon start="67544" stop="67628"/>
              <exon start="71689" stop="71777"/>
              <exon start="72904" stop="73015"/>
              <exon start="73204" stop="73416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67187" stop="67281"/>
              <exon start="67374" stop="67457"/>
              <exon start="67544" stop="67628"/>
              <exon start="71689" stop="71777"/>
              <exon start="72904" stop="73015"/>
              <exon start="73204" stop="73516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTTCCGAGAAAACGACAGGTTACAGGGGAAGCTTTAACCGTTACAAAATTCGTTCTTCCTCCGGCGAAAAGATTTTACTCTTACTACTAGGAGAAGTCCATCCCAGTCTATTCATCGGGCTTTAGCACGCAAGTCGCTTCTGTACCCGTTCAATGGGTGCTTCCGAATCAGTTCTCTCCGGCTCACAA : GGGCCAATCGATGAGATCACCACAGTTTCTGAGCGTGTAGAAGGCGTTGATCCTATTTTGGATAGGCTAAAATCTCTCAAAATT : GCTTCTCCAATACTGAAATCGCCACCAGCTGAGAGTAGCTTGACTGACATTCTGGTGAGGAAAGCATCCTCCACTTCAAATAAAG : GCTGCGTAGATCCAAAAGTTCTACTTGAGCTCTTCTCTGTATATCGTCAGTGGCAAGAGGAGAAGGCCCAGAAGATCTGTAAAAGACAG : GAAGAAATAGAAAACAAAATAGAAGTTGCAGATGCATTGGCTGTTAAGCTTCTTCAACGCTTCAATTACTCTGTTTCCGCAATGAAAACAACCTCACAGCATCTGTCAGAAG : TACATGGTTTGCAGGTTGAACTTGGAGTGTTGAAAGGCAGGTTGACAGAGGTAATCAGTAATTGTGATGCATTGTGCAAGAGGATTGATGCAGAGGGACCAGAATCGCTGCGATCATCTATCAAACCATTTACAATAGCTTCCTCGGACACAGAAAGCAACAGCAGCAGCATGCATACTCTGCAAGGTAAAGCAGATGAAAAGCAATAGTGCCGAGGCCTCTCTTTGGAGCTTATAAAATGTCTCTATACCCCCGGGTGTACATTACTTGTTTGAGAATTAACGACCCATACTTGTATCTAGTCCTACTGACT</gDNA_template>
            <first_frame> S  F  R  E  N  D  R  L  Q  G  K  L  *  P  L  Q  N  S  F  F  L  R  R  K  D  F  T  L  T  T  R  R  S  P  S  Q  S  I  H  R  A  L  A  R  K  S  L  L  Y  P  F  N  G  C  F  R  I  S  S  L  R  L  T   : R  A  N  R  *  D  H  H  S  F  *  A  C  R  R  R  *  S  Y  F  G  *  A  K  I  S  Q  N   : C  F  S  N  T  E  I  A  T  S  *  E  *  L  D  *  H  S  G  E  E  S  I  L  H  F  K  *  R :   L  R  R  S  K  S  S  T  *  A  L  L  C  I  S  S  V  A  R  G  E  G  P  E  D  L  *  K  T   : G  R  N  R  K  Q  N  R  S  C  R  C  I  G  C  *  A  S  S  T  L  Q  L  L  C  F  R  N  E  N  N  L  T  A  S  V  R  S :   T  W  F  A  G  *  T  W  S  V  E  R  Q  V  D  R  G  N  Q  *  L  *  C  I  V  Q  E  D  *  C  R  G  T  R  I  A  A  I  I  Y  Q  T  I  Y  N  S  F  L  G  H  R  K  Q  Q  Q  Q  H  A  Y  S  A  R  *  S  R  *  K  A  I  V  P  R  P  L  F  G  A  Y  K  M  S  L  Y  P  R  V  Y  I  T  C  L  R  I  N  D  P  Y  L  Y  L  V  L  L  T </first_frame>
            <second_frame>  A  S  E  K  T  T  G  Y  R  G  S  F  N  R  Y  K  I  R  S  S  S  G  E  K  I  L  L  L  L  L  G  E  V  H  P  S  L  F  I  G  L  *  H  A  S  R  F  C  T  R  S  M  G  A  S  E  S  V  L  S  G  S  Q  :  G  P  I  D  E  I  T  T  V  S  E  R  V  E  G  V  D  P  I  L  D  R  L  K  S  L  K  I  :  A  S  P  I  L  K  S  P  P  A  E  S  S  L  T  D  I  L  V  R  K  A  S  S  T  S  N  K   : G  C  V  D  P  K  V  L  L  E  L  F  S  V  Y  R  Q  W  Q  E  E  K  A  Q  K  I  C  K  R  Q  :  E  E  I  E  N  K  I  E  V  A  D  A  L  A  V  K  L  L  Q  R  F  N  Y  S  V  S  A  M  K  T  T  S  Q  H  L  S  E   : V  H  G  L  Q  V  E  L  G  V  L  K  G  R  L  T  E  V  I  S  N  C  D  A  L  C  K  R  I  D  A  E  G  P  E  S  L  R  S  S  I  K  P  F  T  I  A  S  S  D  T  E  S  N  S  S  S  M  H  T  L  Q  G  K  A  D  E  K  Q  *  C  R  G  L  S  L  E  L  I  K  C  L  Y  T  P  G  C  T  L  L  V  *  E  L  T  T  H  T  C  I  *  S  Y  *   </second_frame>
            <third_frame>   L  P  R  K  R  Q  V  T  G  E  A  L  T  V  T  K  F  V  L  P  P  A  K  R  F  Y  S  Y  Y  *  E  K  S  I  P  V  Y  S  S  G  F  S  T  Q  V  A  S  V  P  V  Q  W  V  L  P  N  Q  F  S  P  A  H  K :   G  Q  S  M  R  S  P  Q  F  L  S  V  *  K  A  L  I  L  F  W  I  G  *  N  L  S  K  L :   L  L  Q  Y  *  N  R  H  Q  L  R  V  A  *  L  T  F  W  *  G  K  H  P  P  L  Q  I  K  :  A  A  *  I  Q  K  F  Y  L  S  S  S  L  Y  I  V  S  G  K  R  R  R  P  R  R  S  V  K  D  R :   K  K  *  K  T  K  *  K  L  Q  M  H  W  L  L  S  F  F  N  A  S  I  T  L  F  P  Q  *  K  Q  P  H  S  I  C  Q  K  :  Y  M  V  C  R  L  N  L  E  C  *  K  A  G  *  Q  R  *  S  V  I  V  M  H  C  A  R  G  L  M  Q  R  D  Q  N  R  C  D  H  L  S  N  H  L  Q  *  L  P  R  T  Q  K  A  T  A  A  A  C  I  L  C  K  V  K  Q  M  K  S  N  S  A  E  A  S  L  W  S  L  *  N  V  S  I  P  P  G  V  H  Y  L  F  E  N  *  R  P  I  L  V  S  S  P  T  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67219" stop="67281"/>
                    <exon start="67374" stop="67457"/>
                    <exon start="67544" stop="67628"/>
                    <exon start="71689" stop="71777"/>
                    <exon start="72904" stop="73015"/>
                    <exon start="73204" stop="73412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HASRFCTRSMGASESVLSGSQGPIDEITTVSERVEGVDPILDRLKSLKIASPILKSPPAESSLTDILVRKASSTSNKGCVDPKVLLELFSVYRQWQEEKAQKICKRQEEIENKIEVADALAVKLLQRFNYSVSAMKTTSQHLSEVHGLQVELGVLKGRLTEVISNCDALCKRIDAEGPESLRSSIKPFTIASSDTESNSSSMHTLQGKADEKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="96284" PGL_stop="97038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96284" e_stop="97038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="96284" e_stop="97038" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96284" stop="97038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96285" stop="96847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATATTGAACCCACGCACGTCGTTCTGATTAGCAATTTTGATGCTTTTAATTCGTAATGTGTCGTCATCTTTTGATAAAAACCAGCTCAAGAATGAGGCATTCGAACGAAATGTTGAATTATTGAGGGGTGGTTGCCTCCCTCCTCTTGTAAACCCTAATTCTATTTTTGAAGTTTTGCATTTCTATGCATCTTTTATAGCTTCAAAGTTTAGATTCCTCCCACTGATGGATATATGTCTGTCTAAATGTGGAAAAAAACATGACAATCACTTCTTTTCAGGCTGGTTAGTCCATTTTTAGGTTTCAATAACACTGTTAATATCAGTTCTGTGTTCCATCTTGTTGAAACCAAGAAGGATTTTTGAGGGTTTAACCCTTTGAAGTGTCATTGTTGTGTATTGTCTCTTAAGGTCCATTTTATGTTTTATTTGGGTTGATTATAGCCAGTGAATTATGAATTGTAACTTTAAGGGAAGATCTTTTTTGTTCAAACATTCAAATGAGAGGCTCTGATATCTATTTTTGACGTTTCTTTGTTGGAAATTGTTACTAATACTCATTGGAGGCCAAACGGACATTGTAAGGATTTGAAGGTTAAATTTCTTTGAGTTTTAGTTGTTAGTATTCATTAAGATAGCTTTCAAACAAATCCCCTAGTCTTTGTTCTTGCCATTGTTTACAGGATGACAAGTGTTTGTACCTTGGAATTTGATGATTGTACACAATATATTGGCACACCAGGTAATTCTGTA</gDNA_template>
            <first_frame> E  I  L  N  P  R  T  S  F  *  L  A  I  L  M  L  L  I  R  N  V  S  S  S  F  D  K  N  Q  L  K  N  E  A  F  E  R  N  V  E  L  L  R  G  G  C  L  P  P  L  V  N  P  N  S  I  F  E  V  L  H  F  Y  A  S  F  I  A  S  K  F  R  F  L  P  L  M  D  I  C  L  S  K  C  G  K  K  H  D  N  H  F  F  S  G  W  L  V  H  F  *  V  S  I  T  L  L  I  S  V  L  C  S  I  L  L  K  P  R  R  I  F  E  G  L  T  L  *  S  V  I  V  V  Y  C  L  L  R  S  I  L  C  F  I  W  V  D  Y  S  Q  *  I  M  N  C  N  F  K  G  R  S  F  L  F  K  H  S  N  E  R  L  *  Y  L  F  L  T  F  L  C  W  K  L  L  L  I  L  I  G  G  Q  T  D  I  V  R  I  *  R  L  N  F  F  E  F  *  L  L  V  F  I  K  I  A  F  K  Q  I  P  *  S  L  F  L  P  L  F  T  G  *  Q  V  F  V  P  W  N  L  M  I  V  H  N  I  L  A  H  Q  V  I  L   </first_frame>
            <second_frame>  R  Y  *  T  H  A  R  R  S  D  *  Q  F  *  C  F  *  F  V  M  C  R  H  L  L  I  K  T  S  S  R  M  R  H  S  N  E  M  L  N  Y  *  G  V  V  A  S  L  L  L  *  T  L  I  L  F  L  K  F  C  I  S  M  H  L  L  *  L  Q  S  L  D  S  S  H  *  W  I  Y  V  C  L  N  V  E  K  N  M  T  I  T  S  F  Q  A  G  *  S  I  F  R  F  Q  *  H  C  *  Y  Q  F  C  V  P  S  C  *  N  Q  E  G  F  L  R  V  *  P  F  E  V  S  L  L  C  I  V  S  *  G  P  F  Y  V  L  F  G  L  I  I  A  S  E  L  *  I  V  T  L  R  E  D  L  F  C  S  N  I  Q  M  R  G  S  D  I  Y  F  *  R  F  F  V  G  N  C  Y  *  Y  S  L  E  A  K  R  T  L  *  G  F  E  G  *  I  S  L  S  F  S  C  *  Y  S  L  R  *  L  S  N  K  S  P  S  L  C  S  C  H  C  L  Q  D  D  K  C  L  Y  L  G  I  *  *  L  Y  T  I  Y  W  H  T  R  *  F  C  </second_frame>
            <third_frame>   D  I  E  P  T  H  V  V  L  I  S  N  F  D  A  F  N  S  *  C  V  V  I  F  *  *  K  P  A  Q  E  *  G  I  R  T  K  C  *  I  I  E  G  W  L  P  P  S  S  C  K  P  *  F  Y  F  *  S  F  A  F  L  C  I  F  Y  S  F  K  V  *  I  P  P  T  D  G  Y  M  S  V  *  M  W  K  K  T  *  Q  S  L  L  F  R  L  V  S  P  F  L  G  F  N  N  T  V  N  I  S  S  V  F  H  L  V  E  T  K  K  D  F  *  G  F  N  P  L  K  C  H  C  C  V  L  S  L  K  V  H  F  M  F  Y  L  G  *  L  *  P  V  N  Y  E  L  *  L  *  G  K  I  F  F  V  Q  T  F  K  *  E  A  L  I  S  I  F  D  V  S  L  L  E  I  V  T  N  T  H  W  R  P  N  G  H  C  K  D  L  K  V  K  F  L  *  V  L  V  V  S  I  H  *  D  S  F  Q  T  N  P  L  V  F  V  L  A  I  V  Y  R  M  T  S  V  C  T  L  E  F  D  D  C  T  Q  Y  I  G  T  P  G  N  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0044J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96314" stop="96586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAILMLLIRNVSSSFDKNQLKNEAFERNVELLRGGCLPPLVNPNSIFEVLHFYASFIASKFRFLPLMDICLSKCGKKHDNHFFSGWLVHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="97309" PGL_stop="97885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97309" e_stop="97794"/>
            <exon e_start="97874" e_stop="97885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.775" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97309" e_stop="97794" e_length="486"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.775">
            <gDNA_intron_boundary i_start="97795" i_stop="97873" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="97874" e_stop="97885" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97309" stop="97794"/>
              <exon start="97874" stop="97885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTATCTCTAAAAGCTAACTAATGCTTGCAGCCATGACATGTTTCTATGCTTTTGAGCTGATTCATGTTTTGAGATGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTATTATTACTCACTCTACTTTGTTTAATACACAATGAGGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATGTCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTGTGAGATTTGGGAAATGTTCCTTTTTTTGGATTGCATGCATTACTCAACTAATAGGCTGTTTGACGGTTTTGTTCATTAATATCTTACTAATATCTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAGTTGGGAGAACTGGTATGACTGTACACAACACAAAACATTAATGCTTACATTTTATTTTGGTTTTA : AAAAATAGGGAA</gDNA_template>
            <first_frame> F  S  I  S  K  S  *  L  M  L  A  A  M  T  C  F  Y  A  F  E  L  I  H  V  L  R  *  V  S  F  P  S  L  T  G  P  P  F  S  *  Y  Y  T  C  T  S  S  F  L  V  I  I  T  H  S  T  L  F  N  T  Q  *  G  F  G  G  F  H  L  L  M  F  N  Q  T  C  L  M  S  N  *  E  T  V  A  W  H  G  T  S  G  G  S  V  R  F  G  K  C  S  F  F  W  I  A  C  I  T  Q  L  I  G  C  L  T  V  L  F  I  N  I  L  L  I  S  F  L  *  M  F  F  I  Y  Y  F  V  V  L  L  V  V  G  R  T  G  M  T  V  H  N  T  K  H  *  C  L  H  F  I  L  V  L  :  K  N  R  E </first_frame>
            <second_frame>  F  L  S  L  K  A  N  *  C  L  Q  P  *  H  V  S  M  L  L  S  *  F  M  F  *  D  E  F  L  S  H  L  S  P  D  H  P  F  R  D  I  T  H  A  L  P  L  F  L  L  L  L  L  T  L  L  C  L  I  H  N  E  D  L  E  V  F  I  Y  *  C  S  I  K  H  V  S  C  R  T  K  K  L  L  L  G  T  A  L  Q  A  G  L  *  D  L  G  N  V  P  F  F  G  L  H  A  L  L  N  *  *  A  V  *  R  F  C  S  L  I  S  Y  *  Y  L  F  Y  R  C  S  L  F  I  I  L  W  F  Y  L  *  L  G  E  L  V  *  L  Y  T  T  Q  N  I  N  A  Y  I  L  F  W  F  * :   K  I  G   </second_frame>
            <third_frame>   F  Y  L  *  K  L  T  N  A  C  S  H  D  M  F  L  C  F  *  A  D  S  C  F  E  M  S  F  F  P  I  S  H  R  T  T  L  F  V  I  L  H  M  H  F  L  F  S  C  Y  Y  Y  S  L  Y  F  V  *  Y  T  M  R  I  W  R  F  S  S  I  D  V  Q  S  N  M  S  H  V  E  L  R  N  C  C  L  A  R  H  F  R  R  V  C  E  I  W  E  M  F  L  F  L  D  C  M  H  Y  S  T  N  R  L  F  D  G  F  V  H  *  Y  L  T  N  I  F  F  I  D  V  L  Y  L  L  F  C  G  F  T  C  S  W  E  N  W  Y  D  C  T  Q  H  K  T  L  M  L  T  F  Y  F  G  F   : K  K  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0044J01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 216472 bytes spliced alignments in total
$ 77 spliced alignments have been stored
$ 2811 bytes was the average size of a spliced alignment
$ 20056 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1671 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 172 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:27:36
-->
