<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:25:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368519" ref_strand="+" ref_description="SGN-E368519 [TUS-23-J4](-)">
      <seq>cgcaagatctggagcaatgcgggaccaattgtcgtccgtagcagtggtcccccaccaccaccaccagcagatgatggtggatttgatgatgaggattcacatctcaaccttaaccacgcaaatttcattgatcacacccctaacttcaatcttaatcctaacgggtttgatgttaaaacttctaagtcgaaaaaaaggcctcgaggaggagaagaaaaacccgggtatattcaacagtactatcatcagtcatctggtggaggaacaaatgtcattctccccccaactccggtctcgatggccgccccccaggccacagccacagctacagctgcagcttcaattcctagtttgatcgaggaaactgtgaggagctgtctatcacccattttcaaggaattgtttaacaatttgaatggatctagatattctgggttcggaatgtcattgggtccatcccctttagtaggatttgggaacagtttaatgagctgtgatatcaatatgaagacggatgagaaatggaggaagcaacagattctggaattggaagtttattcaaagagattagagcttgttcaagatcaaataaaggcacagttggaagaactcagatccatgaacagttagaccatggtttacccctttcttatactagtagaattttataataattcttgttgatggatgatattaccagattgcgaaaatagctaattgttctatttacataattgtgaaggctgtttagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="1948" stop="595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1648" g_stop="893" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E368519" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1648" e_stop="893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATT</genome_strand>
        <mrna_strand>CGCAAGATCTGGAGCAATGCGGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333883" ref_strand="+" ref_description="SGN-E333883 [cTOD-24-E2]">
      <seq>ttttaacatcaaacccgttaggattaagattgaagttaggggtgtgatcaatgaaatttgcgtggttaaggttgagatgtgaatcctcatcatcaaatccaccatcatctgctggtggtggtggtgggggaccactgctacggacgacaattggtccggcattgctccagatcttgcgagagatctcgaaggtggcttgatcgtgagggctcttaaacacaaattccttaccagatcccatcttgctcatcactgtccgatacttcttcttcaatctcctcagcttctctactaattgattcttgttgaaatccaactgcagcttgttcttgatttggtcatagaacgcacctgtatcatgatgatgatgcgaagatgaatttatcccaccgcgctgggttgtgtattccagaaatccttgtaacaattcgatctcatcttcatccatccacagccgttgaaaaagcttgcgagaatcatccaaaactaagggctttttttcttccacaaccatcgtggccggagtaacgccgaaatcgttgatccgctctcgttttggttcaatacaaagtgaatcagttgcagggacaccgacaacggctatagtaacctctccggcgacggaatggttcgcaacgggcacggnaaggagaaagaagntgaaatcgtctcttcctccnntctctcatcgacatctacgtcgtcatcttcatcaancacggcttcgttctggggatgaccgctctcttcatcatcttcctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="+" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="1171" stop="2533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1471" g_stop="2233" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="+" ref_id="SGN-E333883" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1471" e_stop="2233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACATCAAACCCGTTAGGATTAAGATTGAAGTTAGGGGTGTGATCAATGAAATTTGCGTGGTTAAGGTTGAGATGTGAATCCTCATCATCAAATCCACCATCATCTGCTGGTGGTGGTGGTGGGGGACCACTGCTACGGACGACAATTGGTCCGGCATTGCTCCAGATCTTGCGAGAGATCTCGAAGGTGGCTTGATCGTGAGGGCTCTTAAACACAAATTCCTTACCAGATCCCATCTTGCTCATCACTGTCCGATACTTCTTCTTCAATCTCCTCAGCTTCTCTACTAATTGATTCTTGTTGAAATCCAACTGCAGCTTGTTCTTGATTTGGTCATAGAACGCACCTGTATCATGATGATGATGCGAAGATGAATTTATCCCACCGCGCTGGGTTGTGTATTCCAGAAATCCTTGTAACAATTCGATCTCATCTTCATCCATCCACAGCCGTTGAAAAAGCTTGCGAGAATCATCCAAAACTAAGGGCTTTTTTTCTTCCACAACCATCGTGGCCGGAGTAACGCCGAAATCGTTGATCCGCTCTCGTTTTGGTTCAATACAAAGTGAATCAGTTGCAGGGACACCGACAACGGCTATAGTAACCTCTCCGGCGACGGAATGGTTCGCAACGGGCACGGG-AGGAG-AGGAAG-TGGAATCGTCCTCTTCCTCCTCCTCCTCATCGACATCTACGTCGTCATCTTCATCAACAACGGCTTCGTTCTGGGGATGACCGCTCTCTTCATCATCTTCCTCATC</genome_strand>
        <mrna_strand>TTTTAACATCAAACCCGTTAGGATTAAGATTGAAGTTAGGGGTGTGATCAATGAAATTTGCGTGGTTAAGGTTGAGATGTGAATCCTCATCATCAAATCCACCATCATCTGCTGGTGGTGGTGGTGGGGGACCACTGCTACGGACGACAATTGGTCCGGCATTGCTCCAGATCTTGCGAGAGATCTCGAAGGTGGCTTGATCGTGAGGGCTCTTAAACACAAATTCCTTACCAGATCCCATCTTGCTCATCACTGTCCGATACTTCTTCTTCAATCTCCTCAGCTTCTCTACTAATTGATTCTTGTTGAAATCCAACTGCAGCTTGTTCTTGATTTGGTCATAGAACGCACCTGTATCATGATGATGATGCGAAGATGAATTTATCCCACCGCGCTGGGTTGTGTATTCCAGAAATCCTTGTAACAATTCGATCTCATCTTCATCCATCCACAGCCGTTGAAAAAGCTTGCGAGAATCATCCAAAACTAAGGGCTTTTTTTCTTCCACAACCATCGTGGCCGGAGTAACGCCGAAATCGTTGATCCGCTCTCGTTTTGGTTCAATACAAAGTGAATCAGTTGCAGGGACACCGACAACGGCTATAGTAACCTCTCCGGCGACGGAATGGTTCGCAACGGGCACGGNAAGGAGAAAGAAGNTGAAATCGT-CTCTTCCTCCNNTCTCTCATCGACATCTACGTCGTCATCTTCATCAANCACGGCTTCGTTCTGGGGATGACCGCTCTCTTCATCATCTTCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728196" ref_strand="+" ref_description="SGN-E728196 [LA17AA12]">
      <seq>gtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgaggagattgaagaagaagtatcggacagtgatgagcaagatgggatctggtaaggaatttgtgtttaagagccctcacgatcaagccaccttcgagatctctcgcaagatctggagcaatgccggaccaattgtcgtccgtagcagtggtcccccaccaccaccaccagcagatgatggtggatttgatgatgaggattcacatctncacctttaccacgcaaatttcattgatcacacccctaactttcatcttaatcctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2508" stop="1187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2208" g_stop="1487" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E728196" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2208" e_stop="1487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAAC</genome_strand>
        <mrna_strand>GTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTNCACCTTTACCACGCAAATTTCATTGATCACACCCCTAACTTTCATCTTAATCCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730499" ref_strand="+" ref_description="SGN-E730499 [LA24BC10]">
      <seq>ccttttaagcccccaaccctcacctcaccctaattacaccttcatgcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgaggagattgaagaagaagtatcggacagtgatgagcaagatgggatctggtaaggaatttgtgtttaagagccctcacgatcaagccaccttcgagatctctcgcaagatctggagcaatgccggaccaattgtcgtccgtagcagtggtcccccaccaccaccaccagcagatgatggtggatttgatgatgaggattcacatctncaccttaaccacgcaaatttcattgatcacacccctaactttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2630" stop="1198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2326" g_stop="1498" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="841" r_length="829" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E730499" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2326" e_stop="1498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATC</genome_strand>
        <mrna_strand>CCAACCCTCACCTCACCCTAATTACACCTTCATGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTNCACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368520" ref_strand="+" ref_description="SGN-E368520 [TUS-23-J4]">
      <seq>cttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgaggagattgaagaagaagtatcggacagtgatgagcaagatgggatctggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2666" stop="1399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2366" g_stop="1699" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E368520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2366" e_stop="1699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTA</genome_strand>
        <mrna_strand>CTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321629" ref_strand="+" ref_description="SGN-E321629 [cTOB-25-J19]">
      <seq>tttactttcggcctaaccacccccttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgangagattgaagaagaagtatcggacagtgatgagcaagatgggatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2689" stop="1401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2389" g_stop="1701" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E321629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2389" e_stop="1701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGG</genome_strand>
        <mrna_strand>TTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGANGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307938" ref_strand="+" ref_description="SGN-E307938 [cLEZ-7-F22]">
      <seq>tcatcactgtccgatacttcttcttcaatctcctcagcttctctactaattgattcttgttgaaatccaactgcagcttgttcttgatttggtcatagaacgcacctgtatcatgatgatgatgcgaagatgaatttatcccaccgcgctgggttgtgtattccagaaatccttgtaacaattcgatctcatcttcatccatccacagccgctgaaaaagcttgcgagaatcatccaaaactaaaggctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="+" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="1417" stop="2270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1717" g_stop="1970" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="+" ref_id="SGN-E307938" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1717" e_stop="1970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACTGTCCGATACTTCTTCTTCAATCTCCTCAGCTTCTCTACTAATTGATTCTTGTTGAAATCCAACTGCAGCTTGTTCTTGATTTGGTCATAGAACGCACCTGTATCATGATGATGATGCGAAGATGAATTTATCCCACCGCGCTGGGTTGTGTATTCCAGAAATCCTTGTAACAATTCGATCTCATCTTCATCCATCCACAGCCGTTGAAAAAGCTTGCGAGAATCATCCAAAACTAAGGGCTTTTTT</genome_strand>
        <mrna_strand>TCATCACTGTCCGATACTTCTTCTTCAATCTCCTCAGCTTCTCTACTAATTGATTCTTGTTGAAATCCAACTGCAGCTTGTTCTTGATTTGGTCATAGAACGCACCTGTATCATGATGATGATGCGAAGATGAATTTATCCCACCGCGCTGGGTTGTGTATTCCAGAAATCCTTGTAACAATTCGATCTCATCTTCATCCATCCACAGCCGCTGAAAAAGCTTGCGAGAATCATCCAAAACTAAAGGCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299921" ref_strand="+" ref_description="SGN-E299921 [cLEW-11-A3]">
      <seq>taattttaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2608" stop="1508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2308" g_stop="1808" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E299921" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2308" e_stop="1808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGAC</genome_strand>
        <mrna_strand>TAATTTTACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246150" ref_strand="+" ref_description="SGN-E246150 [cLEF-40-D5]">
      <seq>cttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2666" stop="1526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2366" g_stop="1826" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E246150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2366" e_stop="1826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGAT</genome_strand>
        <mrna_strand>CTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365665" ref_strand="+" ref_description="SGN-E365665 [cLPT-8-A23]">
      <seq>ggaattcggcacgaggctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctataacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgatgacgtagatgtcgatgaggaggaggaagaagaggatgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgattgttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacgtctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2615" stop="1568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2315" g_stop="1868" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="464" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E365665" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2315" e_stop="1868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACC</genome_strand>
        <mrna_strand>CTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTATAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGATGACGTAGATGTCGATGAGGAGGAGGAAGAAGAGGATGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATTGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGTCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365807" ref_strand="+" ref_description="SGN-E365807 [cLPT-8-A24]">
      <seq>tcaccctaattacaccttcaagcttgtcaaatggcttccgtagaagatcaggccgtcgtctataacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgatgacgtagatgtcgatgaggaggaggaagaagaggatgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccgggcacgattgttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2614" stop="1630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2314" g_stop="1930" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E365807" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2314" e_stop="1930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTC</genome_strand>
        <mrna_strand>TCACCCTAATTACACCTTCAAGCTTGTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTATAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGATGACGTAGATGTCGATGAGGAGGAGGAAGAAGAGGATGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGGCACGATTGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322921" ref_strand="+" ref_description="SGN-E322921 [cTOB-30-A8]">
      <seq>tttactttcggcctaaccacccccttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcanatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2689" stop="1868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2389" g_stop="2168" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E322921" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2389" e_stop="2168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGAC</genome_strand>
        <mrna_strand>TTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCANATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394550" ref_strand="+" ref_description="SGN-E394550 [TUS-14-H1](-)">
      <seq>acgtcgacctgacccaaaaatgcccgacggagctaggggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaagttagcgtgtccaaaatcttacagctatgcatatgacgatgcgacaagtacattcacatgttctaatgccaattacatcatcacattttgtccatcctctcaaaccagcaaaaaatcttcaaaagcggatggatcgacacctgagtcaggttctgaatcagggtcagatcctgaatcattacctggctctgaatcagggtcaggatcagggtcaggggcgatgggtcagaccatgctagcggatggatcttggttagctagtttggcggtaggaagctcaactagtaatcaaccttcaagagttattcaatttacaccactaatggtggcttttgtactttttataggttcacttttgaaattatagagtttctaattacaattaaaatttcattgagtatagtagataaggttgttaattgttaaataagaaaaaagaaagagcaaaacgaggtacaaatgtgctagcttctattaaactcacattgtaaacgattccactaattacataagctcatcccttttcttctttctccttttaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="5333" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5033" g_stop="4766" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4611" g_stop="4178" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="702" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="717"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E394550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5033" e_stop="4766"/>
          <exon e_start="4611" e_stop="4178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAGGTAAATGAAATCATAAAATCTATAAGTCAAAAGAGAAGTGTAAATGACTATTCATTAGTAAAATTTAAATTTATTTTGATGTACATTAGTATTATAAATCATTTTGGCCAAGTTTAATAAGCTTTTGATTAACATTTTTCTCCTTTTTGTGCAGCAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</genome_strand>
        <mrna_strand>ACGTCGACCTGACCCAAAAATGCCCGACGGAGCTAGGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG..........................................................................................................................................................CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394911" ref_strand="+" ref_description="SGN-E394911 [TUS-43-G9](-)">
      <seq>ttttcaaaaagcggatggatcgacacctgagtcaggttctgaatcggggtccgatcccgaatcattacctggctttgaatcaaaatcaaaatcagggtcaggggcgatgggtcagaccatgctagcggatggatcttggttagctagtttggcggtaggaagctcaactagtaatcaaccttcaagagttattcaatttccaccactaatggtggcttttgtactttttataggttcacttttgaaattatagagtttctaattacaattaaaatttcattgagtatagtagataaggttgttaattgttaaataagaaaaaagaaagagcaaaacgaggtacaaatgtgctagcttctattaaactcacattgtaaacgattccactaattacataagctcatcccttttcttctttctccttttaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="4904" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4604" g_stop="4178" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E394911" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4604" e_stop="4178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTC-AAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</genome_strand>
        <mrna_strand>TTTTCAAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCGGGGTCCGATCCCGAATCATTACCTGGCTTTGAATCAAAATCAAAATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTCCACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396701" ref_strand="+" ref_description="SGN-E396701 [TUS-43-H9](-)">
      <seq>tgggtcagaccatgttagcgtatggattttggttaggtagtttggcggtaggaagttcaaatagtaatcaaccttcaagagttattcaatttacaccactaatggtggcttttgtactttttataggttcacttttgaaattatagagtttctaattacaattaaaatttcattgagtatagtagataaggttgttaattgttaaataagaaaaaagaaagagcaaaacgaggtacaaatgtgctagcttctattaaactcacattgtaaacgattccactaattacataagctcatcccttttcttctttctccttttaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="4798" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4498" g_stop="4178" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="336"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E396701" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4498" e_stop="4178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</genome_strand>
        <mrna_strand>TGGGTCAGACCATGTTAGCGTATGGATTTTGGTTAGGTAGTTTGGCGGTAGGAAGTTCAAATAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706647" ref_strand="+" ref_description="SGN-E706647 [FA30CB10]">
      <seq>atagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaagttagcgtgtccaaaatcttacagctatgcatatgacgatgcgacaagtacattcacatgttctaatgccaattacatcatcacattttgtccatcctctcaaaccagcaaaaaatcttcaaaagcggatggatcgacacctgagtcaggttctgaatcagggtcagatcctgaatcattacctggctctgaatcagggtcaggatcagggtcaggggcgatgggtcagaccatgctagcggatggatcttggttagctagtttggcggtaggaagctcaactagtaatcacccttcaagagtttattcatttacaccactaatggtggcttttgtactttttataggttcacttttgaaattatagagtttctaanttacaattaaatttcattgagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="5648" stop="4019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5348" g_stop="4766" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4611" g_stop="4319" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="876" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E706647" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5348" e_stop="4766"/>
          <exon e_start="4611" e_stop="4319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAGGTAAATGAAATCATAAAATCTATAAGTCAAAAGAGAAGTGTAAATGACTATTCATTAGTAAAATTTAAATTTATTTTGATGTACATTAGTATTATAAATCATTTTGGCCAAGTTTAATAAGCTTTTGATTAACATTTTTCTCCTTTTTGTGCAGCAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAG-TTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAA-TTACAATTAAAATTTCATTGAGTAT</genome_strand>
        <mrna_strand>ATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG..........................................................................................................................................................CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCACCCTTCAAGAGTTTATTC-ATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAANTTACAATT-AAATTTCATTGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731888" ref_strand="+" ref_description="SGN-E731888 [LA28BH06]">
      <seq>gtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaagttagcgtgtccaaaatcttacagctatgcatatgacgatgcgacaagtacattcacatgttctaatgccaattacatcatcacattttgtccatcctctcaaaccagcaaaaaatcttcaaaagcggatggatcgacacctgagtcaggttctgaatcagggtcagatcctgaatcattacctggctctgaatcagggtcaggatcagggtcaggggcgatgggtcagaccatgctagcggatggatcttggttagctagtttggcggtaggaagctcaactagtaatcaacctttcagagttattcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="5682" stop="4106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5382" g_stop="4766" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4611" g_stop="4406" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="823" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E731888" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5382" e_stop="4766"/>
          <exon e_start="4611" e_stop="4406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAGGTAAATGAAATCATAAAATCTATAAGTCAAAAGAGAAGTGTAAATGACTATTCATTAGTAAAATTTAAATTTATTTTGATGTACATTAGTATTATAAATCATTTTGGCCAAGTTTAATAAGCTTTTGATTAACATTTTTCTCCTTTTTGTGCAGCAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTA</genome_strand>
        <mrna_strand>GTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG..........................................................................................................................................................CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTTCAGAGTTATTCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729835" ref_strand="+" ref_description="SGN-E729835 [LA22BA09]">
      <seq>ttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaagttagcgtgtccaaaatcttacagctatgcatatgacgatgcgacaagtacatccacatgttctaatgccaattacatcatcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6206" stop="4487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5906" g_stop="5668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4787" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="882" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E729835" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5906" e_stop="5668"/>
          <exon e_start="5429" e_stop="4787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATT</genome_strand>
        <mrna_strand>TTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATCCACATGTTCTAATGCCAATTACATCATCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731006" ref_strand="+" ref_description="SGN-E731006 [LA25DE03]">
      <seq>cccttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaccgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaagcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6204" stop="4573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5906" g_stop="5668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4873" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="796" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E731006" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5906" e_stop="5668"/>
          <exon e_start="5429" e_stop="4873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAG</genome_strand>
        <mrna_strand>CCCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCACCGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAAGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730671" ref_strand="+" ref_description="SGN-E730671 [LA24DC09]">
      <seq>cactttcacacaccctccttaatttcccaattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaacggcggacggtggtggcgcttgtangagcgcgtgtgatgcttttaagactccacagtactgttgtgaangcgcttatgcttcaccggcgacgtgctcgccgtcggtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6301" stop="4587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6001" g_stop="5668" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4887" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="877" r_length="543" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E730671" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6001" e_stop="5668"/>
          <exon e_start="5429" e_stop="4887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACT</genome_strand>
        <mrna_strand>CACTTTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAACGGCGGACGGTGGTGGCGCTTGTANGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAANGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726442" ref_strand="+" ref_description="SGN-E726442 [LA11DC08]">
      <seq>gaggcttaatttcccaattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtangagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcacgggcgacgtgctcgccgtcggtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6284" stop="4588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5988" g_stop="5668" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4888" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="863" r_length="542" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E726442" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5988" e_stop="5668"/>
          <exon e_start="5429" e_stop="4888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTAC</genome_strand>
        <mrna_strand>GAGGCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTANGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACGGGCGACGTGCTCGCCGTCGGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708300" ref_strand="+" ref_description="SGN-E708300 [FA35BE12]">
      <seq>cgcttcagcagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaagcgcttatgcttcaccggcgacgtgcctcccctcggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6257" stop="4590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5958" g_stop="5668" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4890" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="831" r_length="540" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E708300" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5958" e_stop="5668"/>
          <exon e_start="5429" e_stop="4890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTT</genome_strand>
        <mrna_strand>CGCTTCAGCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAAGCGCTTATGCTTCACCGGCGACGTGCCTCCCCTCGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729103" ref_strand="+" ref_description="SGN-E729103 [LA20AA05]">
      <seq>cactcacacaccctccttaatttcccaattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6299" stop="4694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5999" g_stop="5668" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4994" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="768" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E729103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5999" e_stop="5668"/>
          <exon e_start="5429" e_stop="4994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGC</genome_strand>
        <mrna_strand>CACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394551" ref_strand="+" ref_description="SGN-E394551 [TUS-14-H1]">
      <seq>cttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaacaaaaatgcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6222" stop="4707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5922" g_stop="5668" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5007" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="678" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E394551" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5922" e_stop="5668"/>
          <exon e_start="5429" e_stop="5007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGA</genome_strand>
        <mrna_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAAACAAAAATGCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729212" ref_strand="+" ref_description="SGN-E729212 [LA20BC12]">
      <seq>ctcacacanccctccttaatttcccattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcangttcgcaggatttctatgacttgagcctactggacgggtacaatttgcctatgatggtggaggtgagtggcgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6297" stop="4760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5997" g_stop="5668" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5060" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="700" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E729212" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5997" e_stop="5668"/>
          <exon e_start="5429" e_stop="5060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACACA-CCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTC</genome_strand>
        <mrna_strand>CTCACACANCCCTCCTTAATTTCCCA-TTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCANGTTCGCAGGATTTCTATGACTTGAGCCTACTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269587" ref_strand="+" ref_description="SGN-E269587 [cLEM-2-B5]">
      <seq>ttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6224" stop="4843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5924" g_stop="5668" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5143" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="544" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E269587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5924" e_stop="5668"/>
          <exon e_start="5429" e_stop="5143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTC</genome_strand>
        <mrna_strand>TTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396702" ref_strand="+" ref_description="SGN-E396702 [TUS-43-H9]">
      <seq>cttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacgagatggagtgcaacggcggaggagctgcaactccggcgacactaccatagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6222" stop="4848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5922" g_stop="5668" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5148" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="538" r_length="283" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E396702" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5922" e_stop="5668"/>
          <exon e_start="5429" e_stop="5148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGAC-AGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTA</genome_strand>
        <mrna_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACGAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTACCATAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247648" ref_strand="+" ref_description="SGN-E247648 [cLEF-42-A3]">
      <seq>ctcacacaccctccttaatttcccaattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6297" stop="4912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5997" g_stop="5668" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5212" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="548" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E247648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5997" e_stop="5668"/>
          <exon e_start="5429" e_stop="5212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGC</genome_strand>
        <mrna_strand>CTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330977" ref_strand="+" ref_description="SGN-E330977 [cTOD-10-D10]">
      <seq>agcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6258" stop="4917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5958" g_stop="5668" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5217" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="504" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E330977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5958" e_stop="5668"/>
          <exon e_start="5429" e_stop="5217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCG</genome_strand>
        <mrna_strand>AGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202392" ref_strand="+" ref_description="SGN-E202392 [cLEC-6-L20]">
      <seq>ttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6221" stop="4950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5921" g_stop="5668" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5250" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="434" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E202392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5921" e_stop="5668"/>
          <exon e_start="5429" e_stop="5250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCG</genome_strand>
        <mrna_strand>TTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398363" ref_strand="+" ref_description="SGN-E398363 [TUS-43-G9]">
      <seq>cttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6222" stop="5049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5922" g_stop="5668" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="5349" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="336" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E398363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5922" e_stop="5668"/>
          <exon e_start="5429" e_stop="5349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGG</genome_strand>
        <mrna_strand>CTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230597" ref_strand="+" ref_description="SGN-E230597 [cLEL-35-E2](-)">
      <seq>cttgtgcatgatggatccgacggcggcatccttggttctgatttttttttctaatttaatatttgtgttatgccaacttttaggtgtctaatagtgtaatgtaacatcaattagtgactgtatagtctcttttatttacctttaggtgatgcgagctagataagcatataaatttcttcctccagtgttcttctgatgcttcgctttctgagttggcaaccccttcaagtgcaagtgcaagacacctggtgatgcagcctcaacaacattgcacccttaagttccttgtataagaaaatctgaaccttttcgatttgaggttagatccagttatcatcttgatgacctctttcagcttcatttactttttgtagtgaatgggtgtctgcttttccattagcgatggcttcttggattgaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="11939" stop="10921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11639" g_stop="11222" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="438"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E230597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11639" e_stop="11222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGCATGATGGATCCGACGGCGGCATCCTTGGTTCTGATTTTTTTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGTATAGTCTCTTTTATTTACCTTTAGGTGATGCGAGCTAGATAAGCATATAAATTTCTTCCTCCAGTGTTCTTCTGATGCTTCGCTTTCTGAGTTGGCAACCCCTTCAAGTGCAAGTGCAAGACACCTGGTGATGCAGCCTCAACAACATTGCACCCTTAAGTTCCTTGTATAAGAAAATCTGAACCTTTTCGATTTGAGGTTAGATCCAGTTATCATCTTGATGACCTCTTTCAGCTTCATTTACTTTTTGTAGTGAATGGGTGTCTGCTTTTCCATTAGCGATGGCTTCTTGGATTG</genome_strand>
        <mrna_strand>CTTGTGCATGATGGATCCGACGGCGGCATCCTTGGTTCTGATTTTTTTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGTATAGTCTCTTTTATTTACCTTTAGGTGATGCGAGCTAGATAAGCATATAAATTTCTTCCTCCAGTGTTCTTCTGATGCTTCGCTTTCTGAGTTGGCAACCCCTTCAAGTGCAAGTGCAAGACACCTGGTGATGCAGCCTCAACAACATTGCACCCTTAAGTTCCTTGTATAAGAAAATCTGAACCTTTTCGATTTGAGGTTAGATCCAGTTATCATCTTGATGACCTCTTTCAGCTTCATTTACTTTTTGTAGTGAATGGGTGTCTGCTTTTCCATTAGCGATGGCTTCTTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230667" ref_strand="+" ref_description="SGN-E230667 [cLEL-35-E2](-)">
      <seq>ctgatttttttttctaatttaatatttgtgttatgccaacttttaggtgtctaatagtgtaatgtaacatcaattagtgactgtatagtctcttttatttacctttaggtgatgcgagctagataagcatataaatttcttcctccagtgttcttctgatgcttcgctttctgagttggcaaccccttcaagtgcaagtgcaagacacctggtgatgcagcctcaacaacattgcacccttaagttccttgtataagaaaatctgaaccttttcgatttgaggttagatccagttatcatcttgatgacctctttcagcttcatttactttttgtagtgaatgggtgtctgcttttccattagcgatggcttcttggattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="11902" stop="10921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11602" g_stop="11222" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E230667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11602" e_stop="11222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTTTTTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGTATAGTCTCTTTTATTTACCTTTAGGTGATGCGAGCTAGATAAGCATATAAATTTCTTCCTCCAGTGTTCTTCTGATGCTTCGCTTTCTGAGTTGGCAACCCCTTCAAGTGCAAGTGCAAGACACCTGGTGATGCAGCCTCAACAACATTGCACCCTTAAGTTCCTTGTATAAGAAAATCTGAACCTTTTCGATTTGAGGTTAGATCCAGTTATCATCTTGATGACCTCTTTCAGCTTCATTTACTTTTTGTAGTGAATGGGTGTCTGCTTTTCCATTAGCGATGGCTTCTTGGATTG</genome_strand>
        <mrna_strand>CTGATTTTTTTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGTATAGTCTCTTTTATTTACCTTTAGGTGATGCGAGCTAGATAAGCATATAAATTTCTTCCTCCAGTGTTCTTCTGATGCTTCGCTTTCTGAGTTGGCAACCCCTTCAAGTGCAAGTGCAAGACACCTGGTGATGCAGCCTCAACAACATTGCACCCTTAAGTTCCTTGTATAAGAAAATCTGAACCTTTTCGATTTGAGGTTAGATCCAGTTATCATCTTGATGACCTCTTTCAGCTTCATTTACTTTTTGTAGTGAATGGGTGTCTGCTTTTCCATTAGCGATGGCTTCTTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249305" ref_strand="+" ref_description="SGN-E249305 [cLEF-50-C11]">
      <seq>tttttttttaatggaaaagcagacacccattcactacaaaaagtaaatgaagctgaaagaggtcatcaagatgataactggatctaacctcaaatcgaaaaggttcagattttcttatacaaggaacttaagggtgcaatgttgttgaggctgcatcaccaggtgtcttgcacttgcacttgaaggggttgccaactcagaaagcgaagcatcagaagaacactggaggaagaaatttatatgcttatctagctcgcatcacctaaaggtaaataaaagagactatacagtcactaattgatgttacattacactattagacacctaaaagttggcataacacaaatattaaattagaaaaaaaaatcagaaccaaggatgccgccgtcggatccatcatgcacaagttcctgggagtaagggcagcttcaaccaactcccctacacccctctgcacacattgtggcggatccatgccattcttctccgccaaacacaacaatgtcacaatgcaggcatttagatattaactgaagccaaacttatctaagcatatgacttcagtcacacgcagatgtctatataatctaagaatactcangagatggctaatgcttgattttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="+" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="10941" stop="12161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11233" g_stop="11861" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="+" ref_id="SGN-E249305" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11233" e_stop="11861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCGCTAATGGAAAAGCAGACACCCATTCACTACAAAAAGTAAATGAAGCTGAAAGAGGTCATCAAGATGATAACTGGATCTAACCTCAAATCGAAAAGGTTCAGATTTTCTTATACAAGGAACTTAAGGGTGCAATGTTGTTGAGGCTGCATCACCAGGTGTCTTGCACTTGCACTTGAAGGGGTTGCCAACTCAGAAAGCGAAGCATCAGAAGAACACTGGAGGAAGAAATTTATATGCTTATCTAGCTCGCATCACCTAAAGGTAAATAAAAGAGACTATACAGTCACTAATTGATGTTACATTACACTATTAGACACCTAAAAGTTGGCATAACACAAATATTAAATTAGAAAAAAAAATCAGAACCAAGGATGCCGCCGTCGGATCCATCATGCACAAGTTCCTGGGAGTAAGGGCAGCTTCAACCAACTCCCCTACACCCCTCTGCACACATTGTGGCGGATCCATGCCATTCTTCTCCGCCAAACACAACAATGTCACAATGCAGGCATTTAGATATTAACTGAAGCCAAACTTATCTAAGCATATGACTTCAGTCACACGCAGATGTCTATATAATCTAAGAATACTCAGGAGATGGCTAATGCTTGATTTTATTGAA</genome_strand>
        <mrna_strand>TTTTTTTTTAATGGAAAAGCAGACACCCATTCACTACAAAAAGTAAATGAAGCTGAAAGAGGTCATCAAGATGATAACTGGATCTAACCTCAAATCGAAAAGGTTCAGATTTTCTTATACAAGGAACTTAAGGGTGCAATGTTGTTGAGGCTGCATCACCAGGTGTCTTGCACTTGCACTTGAAGGGGTTGCCAACTCAGAAAGCGAAGCATCAGAAGAACACTGGAGGAAGAAATTTATATGCTTATCTAGCTCGCATCACCTAAAGGTAAATAAAAGAGACTATACAGTCACTAATTGATGTTACATTACACTATTAGACACCTAAAAGTTGGCATAACACAAATATTAAATTAGAAAAAAAAATCAGAACCAAGGATGCCGCCGTCGGATCCATCATGCACAAGTTCCTGGGAGTAAGGGCAGCTTCAACCAACTCCCCTACACCCCTCTGCACACATTGTGGCGGATCCATGCCATTCTTCTCCGCCAAACACAACAATGTCACAATGCAGGCATTTAGATATTAACTGAAGCCAAACTTATCTAAGCATATGACTTCAGTCACACGCAGATGTCTATATAATCTAAGAATACTCANGAGATGGCTAATGCTTGATTTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317002" ref_strand="+" ref_description="SGN-E317002 [cTOA-27-C21]">
      <seq>acagtatatgtacaaaacactcgtgagtggcaatcacatgtgggctttcaaaaagcagtttgcaatccagttggctctttctagttttatgtccttcatgctccaaatcggtggaaggtctccaaacaagattttatttgctaaaaacaccggaaaaattttccagactgatttccatcctgcttatgatgcaaatggaatgattgaatttaatgaaccagtgccgttccgcctgaccagaaatttgcaagcgtttttttctcattttggagtagaaggcttagttgtttctgccatgtgtgctgctgctcaggctgtggtctctcctaaacaaagccagctcttatggtatcatctggcgatgtttttccgagatgagttgttatcttggtcttggagaagacctcttgggatgcctctggccactgttgtaggggcaggtaatctgaatcctgtggacttcaaacaaaaagtcactacaaatgttgagaatgtcattgggcggatcactggaatagcccctcaatatatctcagaagaggaggagaatggcatggatccgccgcaatctgtgcagaggggagtagcggagttggttgaagctgcccttactccaaggaacttgtgcatgatggatccgacgtggcatccttggttctgatttattattttctaatttaattttcttgttatgtcaacttttaggtgtctaatagtgtaatctaactttaattagtgactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="12855" stop="11219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12555" g_stop="12229" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12228" i_stop="12147" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12146" g_stop="11938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="540" r_length="209" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11937" i_stop="11721" i_length="217">
            <donor d_prob="0.331" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11720" g_stop="11519" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="743" r_length="203" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E317002" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12555" e_stop="12229"/>
          <exon e_start="12146" e_stop="11938"/>
          <exon e_start="11720" e_stop="11519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTATATGTTCAAAACACTCTTGAGTGGCAATCACATGTGGGCTTTC-AAAAGCAGTTTGTAATCCAGTTGGCACTTTCTAGTTTTATGTTGTTCATGCTCCAAATTGGTGGAAGGTCTCCAAACAAGATAGTATTTGCTAAAAACACCGAAAAAATTTTCCAGACCGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAGCCAGTGCCATT---CCTGACCAGAAATTTGCAAGCGTTTTTCTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCGTGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAAGTAAGATTTATTTCTGCACACATCATATATTCTACTTTGTTTAATTCCTGAATGCTGATAACCAAATAATTGCCATCTGCAGCAAAGCCAGCTCTTATGGTATCATCTGGCAATTTTTTTTCGAGATGAGTTGCTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCGCTGTTGTATGTTCAGGTAATCCGAACCTTGTGGACTTAAAACAAAAAGTCACTACAAATGTTGAGAATGTCTTTGGGCTGATCAATGGAATAGCCCCTCAATACATCTCAGAAGAGTTATCCACTTGTTTACTTTTTGGTGCTATTTATATAGCTCTTGAGTTCCTCACCAAGTAATTACCACTTCCCTTTTTCAATAAAATCAAGCATTAGCCATCTCCTGAGTATTCTTAGATTATATAGACATCTGCGTGTGACTGAAGTCATATGCTTAGATAAGTTTGGCTTCAGTTAATATCTAAATGCCTGCATTGTGACATTGTTGTGTTTGGCGGAGAAGAATGGCATGGATCCGCCACAATGTGTGCAGAGGGGTGTAGGGGAGTTGGTTGAAGCTGCCCTTACTCCCAGGAACTTGTGCATGATGGATCCGACGGCGGCATCCTTGGTTCTGATTT-TT-TTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGT</genome_strand>
        <mrna_strand>ACAGTATATGTACAAAACACTCGTGAGTGGCAATCACATGTGGGCTTTCAAAAAGCAGTTTGCAATCCAGTTGGCTCTTTCTAGTTTTATGTCCTTCATGCTCCAAATCGGTGGAAGGTCTCCAAACAAGATTTTATTTGCTAAAAACACCGGAAAAATTTTCCAGACTGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAACCAGTGCCGTTCCGCCTGACCAGAAATTTGCAAGCGTTTTTTTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCATGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAA..................................................................................CAAAGCCAGCTCTTATGGTATCATCTGGCGATGTTTTTCCGAGATGAGTTGTTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCACTGTTGTAGGGGCAGGTAATCTGAATCCTGTGGACTTCAAACAAAAAGTCACTACAAATGTTGAGAATGTCATTGGGCGGATCACTGGAATAGCCCCTCAATATATCTCAGAAGA.........................................................................................................................................................................................................................GGAGGAGAATGGCATGGATCCGCCGCAATCTGTGCAGAGGGGAGTAGCGGAGTTGGTTGAAGCTGCCCTTACTCCAAGGAACTTGTGCATGATGGATCCGAC-GTGGCATCCTTGGTTCTGATTTATTATTTTCTAATTTAATTTTCTTGTTATGTCAACTTTTAGGTGTCTAATAGTGTAATCTAACTTTAATTAGTGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317117" ref_strand="+" ref_description="SGN-E317117 [cTOA-27-B20]">
      <seq>acagtatatgtacaaaacactcgtgagtggcaatcacatgtgggctttcaaaaagcagtttgcaatccagttggctctttctagttttatgtccttcatgctccaaatcggtggaaggtctccaaacaagattttatttgctaaaaacaccggaaaaattttccagactgatttccatcctgcttatgatgcaaatggaatgattgaatttaatgaaccagtgccgttccgcctgaccagaaatttgcaagcgtttttttctcattttggagtagaaggcttagttgtttctgccatgtgtgctgctgctcaggctgtggtctctcctaaacaaagccagctcttatggtatcatctggcgatgtttttccgagatgagttgttatcttggtcttggagaagacctcttgggatgcctctggccactgttgtaggggcaggtaatctgaatcctgtggacttcaaacaaaaagtcactacaaatgttgagaatgtcattgggcggatcactggaatagcccctcaatatatctcagaagaggaggagaatggcatggatccgccgcaatctgtgcagaggggagtagcggagttggttgaagctgcccttactccaaggaacttgtgcatgatggatccgacgtggcatccttggttctgatttattattttctaatttaattttcttgttatgtcaacttttaggtgtctaatagtgtaatctaactttaattagtgactgttangtgatgcaagctagatggtactgtaaatattattgctagctgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="12855" stop="11214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12555" g_stop="12229" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12228" i_stop="12147" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12146" g_stop="11938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="540" r_length="209" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11937" i_stop="11721" i_length="217">
            <donor d_prob="0.331" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11720" g_stop="11519" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="743" r_length="203" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E317117" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12555" e_stop="12229"/>
          <exon e_start="12146" e_stop="11938"/>
          <exon e_start="11720" e_stop="11519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTATATGTTCAAAACACTCTTGAGTGGCAATCACATGTGGGCTTTC-AAAAGCAGTTTGTAATCCAGTTGGCACTTTCTAGTTTTATGTTGTTCATGCTCCAAATTGGTGGAAGGTCTCCAAACAAGATAGTATTTGCTAAAAACACCGAAAAAATTTTCCAGACCGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAGCCAGTGCCATT---CCTGACCAGAAATTTGCAAGCGTTTTTCTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCGTGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAAGTAAGATTTATTTCTGCACACATCATATATTCTACTTTGTTTAATTCCTGAATGCTGATAACCAAATAATTGCCATCTGCAGCAAAGCCAGCTCTTATGGTATCATCTGGCAATTTTTTTTCGAGATGAGTTGCTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCGCTGTTGTATGTTCAGGTAATCCGAACCTTGTGGACTTAAAACAAAAAGTCACTACAAATGTTGAGAATGTCTTTGGGCTGATCAATGGAATAGCCCCTCAATACATCTCAGAAGAGTTATCCACTTGTTTACTTTTTGGTGCTATTTATATAGCTCTTGAGTTCCTCACCAAGTAATTACCACTTCCCTTTTTCAATAAAATCAAGCATTAGCCATCTCCTGAGTATTCTTAGATTATATAGACATCTGCGTGTGACTGAAGTCATATGCTTAGATAAGTTTGGCTTCAGTTAATATCTAAATGCCTGCATTGTGACATTGTTGTGTTTGGCGGAGAAGAATGGCATGGATCCGCCACAATGTGTGCAGAGGGGTGTAGGGGAGTTGGTTGAAGCTGCCCTTACTCCCAGGAACTTGTGCATGATGGATCCGACGGCGGCATCCTTGGTTCTGATTT-TT-TTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGT</genome_strand>
        <mrna_strand>ACAGTATATGTACAAAACACTCGTGAGTGGCAATCACATGTGGGCTTTCAAAAAGCAGTTTGCAATCCAGTTGGCTCTTTCTAGTTTTATGTCCTTCATGCTCCAAATCGGTGGAAGGTCTCCAAACAAGATTTTATTTGCTAAAAACACCGGAAAAATTTTCCAGACTGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAACCAGTGCCGTTCCGCCTGACCAGAAATTTGCAAGCGTTTTTTTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCATGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAA..................................................................................CAAAGCCAGCTCTTATGGTATCATCTGGCGATGTTTTTCCGAGATGAGTTGTTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCACTGTTGTAGGGGCAGGTAATCTGAATCCTGTGGACTTCAAACAAAAAGTCACTACAAATGTTGAGAATGTCATTGGGCGGATCACTGGAATAGCCCCTCAATATATCTCAGAAGA.........................................................................................................................................................................................................................GGAGGAGAATGGCATGGATCCGCCGCAATCTGTGCAGAGGGGAGTAGCGGAGTTGGTTGAAGCTGCCCTTACTCCAAGGAACTTGTGCATGATGGATCCGAC-GTGGCATCCTTGGTTCTGATTTATTATTTTCTAATTTAATTTTCTTGTTATGTCAACTTTTAGGTGTCTAATAGTGTAATCTAACTTTAATTAGTGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731320" ref_strand="+" ref_description="SGN-E731320 [LA26DB05]">
      <seq>gatcctacagcttttccgtgttatgaatcggatgtttgataagcacaaggaatccaggcggcgacacatctgcattcacacccctattattatacccgtgtggtcacaggttcgcatggtagaggatgatttgatgtacagcactttcctggaggtttatgagaaccattgtgcaagaaatgaccgagaagccgacttaccaatcacatttttcaaggagcaactcaaccaagccatatctggacagatctcaccagatgctgttgttgatctccgtcttcaagcatataatgagatcacaaaaagtttcgtcacagaaagcatattctcacagtatatgtacaaaacactcgtgagtggcaatcacatgtgggctttcaaaaagcagtttgcaatccagttggctctttctagttttatgtccttcatgctccaaatcggtggaaggtctccaaacaagattttatttgctaaaaacaccggaaaaattttccagactgatttccatcctgcttatgatgcaaatggaatgattgaatttaatgaaccagtgccgttccgcctgaccagaaatttgcaagcgtttttttctcattttggagtagaaggcttagttgtttctgccatgtgtgctgctgctcaggctgtggtctctcctaaacaaagccagctcttatggtatcatctggcgatgtttttccgagatgagttgttatcttggtcttggagaagacctcttgggatgcctctggccactgttgtaggggcaggtaatctgaatcctgtggacttcaaacaaaagtcactacaaatgttgagaatgtcattgggcggatcactggaatagccccctcatatatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="13423" stop="11644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13123" g_stop="13016" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13015" i_stop="12777" i_length="239">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12776" g_stop="12229" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="661" r_length="552" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12228" i_stop="12147" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12146" g_stop="11944" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="863" r_length="202" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E731320" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13123" e_stop="13016"/>
          <exon e_start="12776" e_stop="12229"/>
          <exon e_start="12146" e_stop="11944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTACAGCTTTTCCGTATGATGAATCGGATGTTTGAGAAGCACATGGAGTCC-GGCAGCGGCACATCTGCATTCACACCCCTATTATTATACCCGTACAGCCACAGGTAGTAACTAATCTTCTTCACCTCATAAACTAGTGTTAGCTTTCCCCCTTTTTTGCTCTATTAGCCAGAAATAAGGCAGCCATTCTCTATTGTGTTATAGTACAATTGCTGTAGTGATGCAAATTGCGTTCTTCACAGTAAGTGCCTTTATATCTAATTGTTTGTGTTATCTGATTGTCCTAACTTTTCAACATTGAGCTATTTTCTTTCAAATAACTCCATGTAAATTCATGATATAGGTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTGGAGGTTTATGAGAACCATTGTGCAAAAAATGACCAAGAAGCAGACTTACCAATCACATTTTTCAAGAAGCAACTCAACCAAGCAATATCTGGATAGATCTCACCAGGTGCTGTTGTTGATCTCCGTCTTCAAGCATATAATGAGATCGTAAAAAGTTTTGCCACAGAAAGCATATTCTCACAGTATATGTTCAAAACACTCTTGAGTGGCAATCACATGTGGGCTTTC-AAAAGCAGTTTGTAATCCAGTTGGCACTTTCTAGTTTTATGTTGTTCATGCTCCAAATTGGTGGAAGGTCTCCAAACAAGATAGTATTTGCTAAAAACACCGAAAAAATTTTCCAGACCGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAGCCAGTGCCATT---CCTGACCAGAAATTTGCAAGCGTTTTTCTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCGTGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAAGTAAGATTTATTTCTGCACACATCATATATTCTACTTTGTTTAATTCCTGAATGCTGATAACCAAATAATTGCCATCTGCAGCAAAGCCAGCTCTTATGGTATCATCTGGCAATTTTTTTTCGAGATGAGTTGCTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCGCTGTTGTATGTTCAGGTAATCCGAACCTTGTGGACTTAAAACAAAAAGTCACTACAAATGTTGAGAATGTCTTTGGGCTGATCAATGGAATAGCCCCTCAATACATCTC</genome_strand>
        <mrna_strand>GATCCTACAGCTTTTCCGTGTTATGAATCGGATGTTTGATAAGCACAAGGAATCCAGGCGGCGACACATCTGCATTCACACCCCTATTATTATACCCGTGTGGTCACAG...............................................................................................................................................................................................................................................GTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTGGAGGTTTATGAGAACCATTGTGCAAGAAATGACCGAGAAGCCGACTTACCAATCACATTTTTCAAGGAGCAACTCAACCAAGCCATATCTGGACAGATCTCACCAGATGCTGTTGTTGATCTCCGTCTTCAAGCATATAATGAGATCACAAAAAGTTTCGTCACAGAAAGCATATTCTCACAGTATATGTACAAAACACTCGTGAGTGGCAATCACATGTGGGCTTTCAAAAAGCAGTTTGCAATCCAGTTGGCTCTTTCTAGTTTTATGTCCTTCATGCTCCAAATCGGTGGAAGGTCTCCAAACAAGATTTTATTTGCTAAAAACACCGGAAAAATTTTCCAGACTGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAACCAGTGCCGTTCCGCCTGACCAGAAATTTGCAAGCGTTTTTTTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCATGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAA..................................................................................CAAAGCCAGCTCTTATGGTATCATCTGGCGATGTTTTTCCGAGATGAGTTGTTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCACTGTTGTAGGGGCAGGTAATCTGAATCCTGTGGACTTCAAAC-AAAAGTCACTACAAATGTTGAGAATGTCATTGGGCGGATCACTGGAATAGCCCCCTCATATATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703024" ref_strand="+" ref_description="SGN-E703024 [FA20BD08]">
      <seq>gcagtttccgccgtttgacgctgattggatcagatggttctcagcgccattttattgttcagacatctttaacaccaaatgccagaagtgatgagcggatcctacagcttttccgtgttatgaatcggatgtttgataagcacaaggaatccaggcggcgacacatctgcattcacacccctattattatacccgtgtggtcacaggttcgcatggtagaggatgatttgatgtacagcactttcctggaggtttatgagaaccattgtgcaagaaatgaccgagaagccgacttaccaatcacatttttcaaggagcaactcaaccaagccatatctggacagatctcaccagatgctgttgttgatctccgtcttcaagcatataatgagatcacaaaaagtttcgtcacagaaagcatattctcacagtatatgtacaaaacactcgtgagtggcaatcacatgtgggctttcaaaaagcagtttgcaatccagttggctctttctagttttatgtccttcatgctccaaatcggtggaaggtctccaaacaagattttatttgctaaaaacaccggaaaaattttccagactgatttccatcctgcttatgatgcaaatggaatgattgaatttaatgaaccagtgccgttccgcctgaccagaaatttgcaagcgtttttttctcattttggagtagaaggcttagttgtttctgccatgtgtgctgctgctcaggctgtggtctctcctnaacaaagccagctcttatggtatcatctggcgatgtttttccgagatgangtgttatcttggtcttggagaagacctcttgggatgcctctggccactgttgtaggggcaggtaatctgaatcctgtggacttcaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="13520" stop="11708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13220" g_stop="13016" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13015" i_stop="12777" i_length="239">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12776" g_stop="12229" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="758" r_length="552" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12228" i_stop="12147" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.790" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12146" g_stop="12008" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="897" r_length="139" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E703024" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13220" e_stop="13016"/>
          <exon e_start="12776" e_stop="12229"/>
          <exon e_start="12146" e_stop="12008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTCCGCCATATGACGCTGATTGGATCAGATGGTTCTCAGCGCAATTTTATTGTTCAGTCATCTTTAACACCAAATGCCAGAATTGATGAGCGGATCCTACAGCTTTTCCGTATGATGAATCGGATGTTTGAGAAGCACATGGAGTCC-GGCAGCGGCACATCTGCATTCACACCCCTATTATTATACCCGTACAGCCACAGGTAGTAACTAATCTTCTTCACCTCATAAACTAGTGTTAGCTTTCCCCCTTTTTTGCTCTATTAGCCAGAAATAAGGCAGCCATTCTCTATTGTGTTATAGTACAATTGCTGTAGTGATGCAAATTGCGTTCTTCACAGTAAGTGCCTTTATATCTAATTGTTTGTGTTATCTGATTGTCCTAACTTTTCAACATTGAGCTATTTTCTTTCAAATAACTCCATGTAAATTCATGATATAGGTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTGGAGGTTTATGAGAACCATTGTGCAAAAAATGACCAAGAAGCAGACTTACCAATCACATTTTTCAAGAAGCAACTCAACCAAGCAATATCTGGATAGATCTCACCAGGTGCTGTTGTTGATCTCCGTCTTCAAGCATATAATGAGATCGTAAAAAGTTTTGCCACAGAAAGCATATTCTCACAGTATATGTTCAAAACACTCTTGAGTGGCAATCACATGTGGGCTTTC-AAAAGCAGTTTGTAATCCAGTTGGCACTTTCTAGTTTTATGTTGTTCATGCTCCAAATTGGTGGAAGGTCTCCAAACAAGATAGTATTTGCTAAAAACACCGAAAAAATTTTCCAGACCGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAGCCAGTGCCATT---CCTGACCAGAAATTTGCAAGCGTTTTTCTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCGTGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAAGTAAGATTTATTTCTGCACACATCATATATTCTACTTTGTTTAATTCCTGAATGCTGATAACCAAATAATTGCCATCTGCAGCAAAGCCAGCTCTTATGGTATCATCTGGCAATTTTTTTTCGAGATGAGTTGCTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCGCTGTTGTATGTTCAGGTAATCCGAACCTTGTGGACTTAAAACAAA</genome_strand>
        <mrna_strand>GCAGTTTCCGCCGTTTGACGCTGATTGGATCAGATGGTTCTCAGCGCCATTTTATTGTTCAGACATCTTTAACACCAAATGCCAGAAGTGATGAGCGGATCCTACAGCTTTTCCGTGTTATGAATCGGATGTTTGATAAGCACAAGGAATCCAGGCGGCGACACATCTGCATTCACACCCCTATTATTATACCCGTGTGGTCACAG...............................................................................................................................................................................................................................................GTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTGGAGGTTTATGAGAACCATTGTGCAAGAAATGACCGAGAAGCCGACTTACCAATCACATTTTTCAAGGAGCAACTCAACCAAGCCATATCTGGACAGATCTCACCAGATGCTGTTGTTGATCTCCGTCTTCAAGCATATAATGAGATCACAAAAAGTTTCGTCACAGAAAGCATATTCTCACAGTATATGTACAAAACACTCGTGAGTGGCAATCACATGTGGGCTTTCAAAAAGCAGTTTGCAATCCAGTTGGCTCTTTCTAGTTTTATGTCCTTCATGCTCCAAATCGGTGGAAGGTCTCCAAACAAGATTTTATTTGCTAAAAACACCGGAAAAATTTTCCAGACTGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAACCAGTGCCGTTCCGCCTGACCAGAAATTTGCAAGCGTTTTTTTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCATGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTNAA..................................................................................CAAAGCCAGCTCTTATGGTATCATCTGGCGATGTTTTTCCGAGATGANGTGTTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCACTGTTGTAGGGGCAGGTAATCTGAATCCTGTGGACTTCAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325056" ref_strand="+" ref_description="SGN-E325056 [cTOC-13-L17]">
      <seq>ccagatcatactgtgaagttagacagggtggcagcagatattccaatagtgcggaggcatggtagcagtttccgccgtttgacgctgattggatcagatggttctcagcgccattttattgttcagacatctttaacaccaaatgccagaagtgatgagcggatcctacagcttttccgtgttatgaatcggatgtttgataagcacaaggaatccaggcggcgacacatctgcattcacacccctattattatacccgtgtggtcacaggttcgcatggtagaggatgatttgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="13584" stop="12447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13284" g_stop="13016" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13015" i_stop="12777" i_length="239">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12776" g_stop="12747" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="300" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E325056" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13284" e_stop="13016"/>
          <exon e_start="12776" e_stop="12747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATCATACTATGAAGTTAGACAGGGTGGCAGCAGATATTCCAATAGTGCGGAGACATCGTAGCAGCTTCCGCCATATGACGCTGATTGGATCAGATGGTTCTCAGCGCAATTTTATTGTTCAGTCATCTTTAACACCAAATGCCAGAATTGATGAGCGGATCCTACAGCTTTTCCGTATGATGAATCGGATGTTTGAGAAGCACATGGAGTCC-GGCAGCGGCACATCTGCATTCACACCCCTATTATTATACCCGTACAGCCACAGGTAGTAACTAATCTTCTTCACCTCATAAACTAGTGTTAGCTTTCCCCCTTTTTTGCTCTATTAGCCAGAAATAAGGCAGCCATTCTCTATTGTGTTATAGTACAATTGCTGTAGTGATGCAAATTGCGTTCTTCACAGTAAGTGCCTTTATATCTAATTGTTTGTGTTATCTGATTGTCCTAACTTTTCAACATTGAGCTATTTTCTTTCAAATAACTCCATGTAAATTCATGATATAGGTTCGCATGGTAGAGGATGATTTGATGTAC</genome_strand>
        <mrna_strand>CCAGATCATACTGTGAAGTTAGACAGGGTGGCAGCAGATATTCCAATAGTGCGGAGGCATGGTAGCAGTTTCCGCCGTTTGACGCTGATTGGATCAGATGGTTCTCAGCGCCATTTTATTGTTCAGACATCTTTAACACCAAATGCCAGAAGTGATGAGCGGATCCTACAGCTTTTCCGTGTTATGAATCGGATGTTTGATAAGCACAAGGAATCCAGGCGGCGACACATCTGCATTCACACCCCTATTATTATACCCGTGTGGTCACAG...............................................................................................................................................................................................................................................GTTCGCATGGTAGAGGATGATTTGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248155" ref_strand="+" ref_description="SGN-E248155 [cLEF-55-M17]">
      <seq>caaaacaggggtgtcatcagcaacatttacattagtaaaccagtgcagttatacagtatggccggggatattatctggggctggaacatccccggtttctcctactggatttcagctgaatccaggacaggccattcccgtttctgttccggcgggttggtcaagtcgtttatggggtcggtctttttgctcccaagattcggcaacgggtaaattcacttgcgtaacaagtgattgcggctccggaacattagagtgcaccggcggagctgctccgccggcgactttagcggagttcacactcaacggagccgatgggcttgacttctacgacgttagtttagtggatggttataacttgcccatgttaataaccccacaaggtggaaccggttccggaaactgttctgcaactgggtgtgtggttgatctgaacgggccatgtccgtcggagctaaagcttgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="25141" stop="24074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24841" g_stop="24374" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E248155" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24841" e_stop="24374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAGGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAGGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</genome_strand>
        <mrna_strand>CAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAAGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAAGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353803" ref_strand="+" ref_description="SGN-E353803 [cTOS-10-C8]">
      <seq>gctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtagtaattttgggagatctgggggtggtagtggaggaagcaagtgttacaactgtggagaggcgggccactttgctagagaatgcactagccaatccgtgaactgatcatgtaaatgatctttctctttattccctacaccctcttagtactcattttcttagcagtgacatgtttttccagtttttctttgattagctatatgaccggttgtgctttcggagtagctctaccgagctgtttgaattcatgttcttgggatgcaaagttttagttaatgatttatatacaagtatataaaaaggctgaaggttcgattcttgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="29811" stop="28772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29511" g_stop="29066" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E353803" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29511" e_stop="29066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCACTTTAA</genome_strand>
        <mrna_strand>GCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335545" ref_strand="+" ref_description="SGN-E335545 [cTOE-2-H21]">
      <seq>gtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtagtaattttgggagatctgggggtggtagtggaggaagcaagtgttacaactgtggagaggcgggccactttgctagagaatgcactagccaatccgtgaactgatcatgtaaatgatctttctctttattccctacaccctcttagtactcattttcttagcagtgacatgtttttccagtttttctttgattagctatatgaccggttgtgctttcggagtagctctaccgagctgtttgaattcatgttcttgggatgcaaagttttagttaatgatttatatacaagtatttnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="29870" stop="28794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29570" g_stop="29090" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E335545" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29570" e_stop="29090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCT</genome_strand>
        <mrna_strand>GTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATTTNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711542" ref_strand="+" ref_description="SGN-E711542 [FB02BB09]">
      <seq>ccgtttaataactgtggaaggacgggacatttggctagggaccgtgatcgcaacagtggaggtggaggaggtggcagaggcgggtgttataactgtggtgctgctggacatttagctagggattgtgaccgtagtagtggtggtggtggtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtagtaattttgggagatctgggggtggtagtggaggaagcaagtgttacaactgtggagaggcgggccactttgctagagaatgcactagccaatccgtgaactgatcatgtaaatgatctttctctttattccctacaccctcttagtactcattttcttagcagtgacatgtttttccagtttttctttgattagctatatgaccggttgtgctttcggagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="30016" stop="28871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29718" g_stop="29171" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E711542" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29718" e_stop="29171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTA</genome_strand>
        <mrna_strand>CCGTTTAATAACTGTGGAAGGACGGGACATTTGGCTAGGGACCGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707292" ref_strand="+" ref_description="SGN-E707292 [FA32CD05]">
      <seq>ccattctcaagggttttgcggagttccgatcaatagattggttaggaatggcggtggaggcatccagaatgacaggaacagtttctaagttcagtaacccaaagggttacggtttcatcaaacctgatgatggatccgaagatctgttcgttcatcaatcagagatcaaatctgatggctaccgttctctctacgaaggccagaaagtggagttcaccatgactgtgaagggagataagtaccaggctattgatgtcactgggcccgatggcgctcctctcgatagtggccgcaatggcaggggaaatagtaacagtcgtgggggtgggggttacggttatggtggtgatgatggtggttatcggaggaacggcaatgatggtgggtatcgtagcgccggtgagtgttataactgtggaaggacgggacatttggctagggactgtgatcgcaacagtggaggtggaggaggtggcagaggcgggtgttataactgtggtgctgctggacatttagctagggattgtgaccgtagtagtggtggtggtggtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtaataattttgggagatctgggggtggtagtggaggaagcaagtgttacaactgtggaaaaggcgggccacttttgctaagaatgcaccagccaatttgtgaactgaatcagtaaaagatctttccctttatcccctaccccctcttagtactcctttttcttatccgggaaatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="30418" stop="28918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30119" g_stop="29218" g_length="902"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="904" r_length="904" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E707292" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30119" e_stop="29218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGG-AGAGGCGGGCCAC-TTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACT-CATTTTCTTAGCAGTGACATGTTTTT</genome_strand>
        <mrna_strand>CCATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAATAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAAAAGGCGGGCCACTTTTGCTA-AGAATGCACCAGCCAATTTGTGAACTGAATCAGTAAAAGATCTTTCCCTTTATCCCCTACCCCCTCTTAGTACTCCTTTTTCTTATCCGGGAAATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688054" ref_strand="+" ref_description="SGN-E688054 [T3_tus_85_F24]">
      <seq>tgctggacatttagctagggattgtgaccgtagtagtggtggtggtggtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtagtaattttgggagatctgggggtggtagtggaggaagcaagtgtttctactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="29917" stop="29041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29617" g_stop="29341" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E688054" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29617" e_stop="29341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGT</genome_strand>
        <mrna_strand>TGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTTCTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688000" ref_strand="+" ref_description="SGN-E688000 [T3_tus_85_A23]">
      <seq>tgctggacatttagctagggattgtgaccgtagtagtggtggtggtggtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgtgattgcccgagtgctgtacgtgttggcggccgtggtggaggaggtagtggggcttgttattcttgcggtgcacaaggacacttgtctagatactgtcccgttggtggtggtagtaattttgtgagatctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="29917" stop="29072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29617" g_stop="29372" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E688000" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29617" e_stop="29372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGG</genome_strand>
        <mrna_strand>TGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGTGATTGCCCGAGTGCTGTACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCTTGCGGTGCACAAGGACACTTGTCTAGATACTGTCCCGTTGGTGGTGGTAGTAATTTTGTGAGATCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718744" ref_strand="+" ref_description="SGN-E718744 [FC05CF12]">
      <seq>cgctaacgccgccttttaaaacggttttagacgcagaaaccgtatttagggttcccctagacttctctttaataaaaaaataaaatatctgtcatagaattagaacattctcaagggttttgcggagttccgatcaatagattggttaggaatggcggtggaggcatccagaatgacaggaacagtttctaagttcagtaacccaaagggttacggtttcatcaaacctgatgatggatccgaagatctgttcgttcatcaatcaaagatcaaatctgatggctaccgttctctctacgaaggccagaaagtggagttcaccatgactgtgaagggagataagtaccaggctattgatgtcactgggcccgatggcgctcctctcgatagtggccgcaatggcaggggaaatagtaacagtcgtgggggtgggggttacggttatggtggtgatgatggtggttatcggaggaacggcaatgatggtgggtatcgtagcgccggtgagtgttataactgtggaaggacgggacatttggctagggactgtgatcgcaacagtggaggtggaggaggtggcagaggcgggtgttataactgtggtgctgctggacatttagctagggattgtgaccgtactactggtggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="30523" stop="29269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30223" g_stop="29569" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E718744" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30223" e_stop="29569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAACGCCGCCTTTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGT</genome_strand>
        <mrna_strand>CGCTAACGCCGCCTTTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAAAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTACTACTGGTGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218073" ref_strand="+" ref_description="SGN-E218073 [cLEL-23-G3](-)">
      <seq>ggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatacagctgaatcacccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31659" stop="19353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31359" g_stop="31235" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30742" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="421" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30741" i_stop="30293" i_length="449">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30292" g_stop="30269" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="445" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E218073" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31359" e_stop="31235"/>
          <exon e_start="31037" e_stop="30742"/>
          <exon e_start="30292" e_stop="30269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAGATACACCAAAATCTTTACAATGTGGTTTTCCTTTTATTCAAACAGTAAAGGACTGTGAAGCAAATTGCCATTATTTAAAACATTTGCCATCTTTTATACAGCTGTATTTATCAACATCTACAGAACAAAATATAATGATATTTGGTTATCAATTAGTACAATATAAACAAATTATAGGGTATACATTTCCAAAGTTAGGTAGCTCTTTTTAACTTTTTAGCACGTACAAAAATCATAGTGATTCAGTCTATTGAAATTTTCAGAGATTCAAATTTTTACATTATGAAAAAAAATAAATAATACAACTACTCCTATCACGAAATAAAAAGTAAATAAAAAACA</genome_strand>
        <mrna_strand>GGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATACAGCTGAATCACCCAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278899" ref_strand="+" ref_description="SGN-E278899 [cLER-2-I23]">
      <seq>ttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaatatcttgttctttttttcattttctcaactacaatatcctttgttgaggtatgggtctatgtagttctttatgaatttataatttatgtttattatattaagatatttatttttacacgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31190" stop="30306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30890" g_stop="30605" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E278899" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30890" e_stop="30605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAGATACAC</genome_strand>
        <mrna_strand>TTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392978" ref_strand="+" ref_description="SGN-E392978 [TUS-37-G13](-)">
      <seq>gatgtacattcaaaccagaatggctcaatatgttgaagaattgtggattttgctccaaaaagacaacaccttcatttacatgttgtggactcaagggcatggagcagggaattgatgaaatcatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacactatgcttctctccccctgcatccatgtagataggtaaatttttccgttgaaattttaatttcattttttgggacttccctttttaaatctttcatctgtatcttttaatgaatcagtgtattggcatttgtccctttaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaatattttttttccaatttttttaactacaatatcctttgttgaggtatgggtcaatgtagttctttatgaattaattattaacgtttatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31680" stop="30331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31380" g_stop="31235" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30645" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="538" r_length="391" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="557"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E392978" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31380" e_stop="31235"/>
          <exon e_start="31037" e_stop="30645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGT-GTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATC--T-ATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTT</genome_strand>
        <mrna_strand>GATGTACATTCAAACCAGAATGGCTCAATATGTTGAAGAATTGTGGATTTTGCTCCAAAAAGACAACACCTTCATTTACATGTTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATCATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACACTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCGTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTTTCATCTGTATCTTTTAATGAATCAGTGTATTGGCATTTGTCCCTTTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATA---T-TT-TTTTTCCAATTTTTTTAACTACAATATCCTTTGTTGAGGTATGGGTCAATGTAGTTCTTTATGAATTAATTATTAACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292371" ref_strand="+" ref_description="SGN-E292371 [cLET-1-O6]">
      <seq>agcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaatatcttgttctttttttcattttctcaactacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31941" stop="30400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31641" g_stop="31590" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="287" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31037" g_stop="30703" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="622" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="632"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E292371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31641" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACA</genome_strand>
        <mrna_strand>AGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299232" ref_strand="+" ref_description="SGN-E299232 [cLET-43-O3]">
      <seq>aaagagatggtcttgtctgggcggactacatgaagcttttgaagaaggcacagcaatggaatgttgaagtttactaaatatttttactttactttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtaaataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaatatcttgttcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31341" stop="30422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31243" g_stop="31235" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30722" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="325" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E299232" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31243" e_stop="31235"/>
          <exon e_start="31037" e_stop="30722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTT</genome_strand>
        <mrna_strand>AAAGAGATG.....................................................................................................................................................................................................GTCTTGTCTGGGCGGACTACATGAAGCTTTTGAAGAAGGCACAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTACTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAAATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398696" ref_strand="+" ref_description="SGN-E398696 [TUS-45-G13](-)">
      <seq>acaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31773" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31597" g_stop="31590" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="243" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31037" g_stop="30731" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="550" r_length="307" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E398696" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31597" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCT</genome_strand>
        <mrna_strand>ACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218840" ref_strand="+" ref_description="SGN-E218840 [cLEL-18-A7](-)">
      <seq>gactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagaagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31594" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31294" g_stop="31235" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30731" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="368" r_length="307" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E218840" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31294" e_stop="31235"/>
          <exon e_start="31037" e_stop="30731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAG-AGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCT</genome_strand>
        <mrna_strand>GACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAAACAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736877" ref_strand="+" ref_description="SGN-E736877 [LC07CF05]">
      <seq>gtttgctcaaacttcttatgtgacttgaagcctggagcagaggtcaagattactggacctgtaggcaaagaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgcgccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32834" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32534" g_stop="32516" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142">
            <donor d_prob="0.550" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32373" g_stop="32282" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="111" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="189" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="487" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31037" g_stop="30735" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="790" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="801"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E736877" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32534" e_stop="32516"/>
          <exon e_start="32373" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTCAAACTTCTTATGTAAGAACTCACGACTCCCTAATTTCATAGGCGATGTTAAGGTTTATCCATTTTATTTTAGTTCGACTATTCATAATATATAGTAGGAGTACTAGCTTCTGCTTGTTCTATACTTATGAAACTACAAATGTTACGATATCAGGTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</genome_strand>
        <mrna_strand>GTTTGCTCAAACTTCTTAT..............................................................................................................................................GTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCGCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283246" ref_strand="+" ref_description="SGN-E283246 [cLER-17-P6]">
      <seq>aaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagcttgatcaaccaaaaatcacaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31760" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31460" g_stop="31235" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30735" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="529" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="542"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E283246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31460" e_stop="31235"/>
          <exon e_start="31037" e_stop="30735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</genome_strand>
        <mrna_strand>AAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTTGATCAACCAAAAATCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738914" ref_strand="+" ref_description="SGN-E738914 [LC15BG01]">
      <seq>accttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31736" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31436" g_stop="31235" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30735" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="505" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="518"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E738914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31436" e_stop="31235"/>
          <exon e_start="31037" e_stop="30735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</genome_strand>
        <mrna_strand>ACCTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737665" ref_strand="+" ref_description="SGN-E737665 [LC10DB06]">
      <seq>aacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaatcacaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31736" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31436" g_stop="31235" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30735" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="505" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="518"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E737665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31436" e_stop="31235"/>
          <exon e_start="31037" e_stop="30735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</genome_strand>
        <mrna_strand>AACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263658" ref_strand="+" ref_description="SGN-E263658 [cLEG-60-G19]">
      <seq>agaggtcaagattactggacctgtaggcaaagaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtcccctctaaaagttgaattttgagggcatggnatcataacatatagctngaatcaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32654" stop="30436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32354" g_stop="32282" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="151" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="214" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="449" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31037" g_stop="30736" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="752" r_length="303" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E263658" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32354" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCT-GAATCAACCAAAAATCACAA</genome_strand>
        <mrna_strand>AGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCCTCTAAAAGTTGAATTTTGAGGGCATGGNATCATAACATATAGCTNGAATCACCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378694" ref_strand="+" ref_description="SGN-E378694 [TUS-29-J9]">
      <seq>ctgggacggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31330" stop="30436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31030" g_stop="30737" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E378694" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31030" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGG-CGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACA</genome_strand>
        <mrna_strand>CTGGGACGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280315" ref_strand="+" ref_description="SGN-E280315 [cLER-1-K21]">
      <seq>ctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31330" stop="30436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31030" g_stop="30737" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E280315" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31030" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACA</genome_strand>
        <mrna_strand>CTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371000" ref_strand="+" ref_description="SGN-E371000 [TUS-29-J9]">
      <seq>ctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31330" stop="30436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31030" g_stop="30737" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E371000" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31030" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACA</genome_strand>
        <mrna_strand>CTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280316" ref_strand="+" ref_description="SGN-E280316 [cLER-1-K21](-)">
      <seq>tctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31331" stop="30442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31031" g_stop="30738" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E280316" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31031" e_stop="30738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCAC</genome_strand>
        <mrna_strand>TCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370999" ref_strand="+" ref_description="SGN-E370999 [TUS-29-J9](-)">
      <seq>tctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31331" stop="30442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31031" g_stop="30738" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E370999" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31031" e_stop="30738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCAC</genome_strand>
        <mrna_strand>TCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296827" ref_strand="-" ref_description="SGN-E296827 [cLET-26-L1]">
      <seq>catgtgtgaactcaagggcatggagcagggaattgatgaaattatgttttcacttgcagaaagagatggtattgtctgggcgtactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatattttgacttttctttgcacaaatatgagccaacattatgtttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31602" stop="30442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31302" g_stop="31235" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30742" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="364" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E296827" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296827" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31302" e_stop="31235"/>
          <exon e_start="31037" e_stop="30742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAA</genome_strand>
        <mrna_strand>CATGTGTGAACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTTTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGTACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTGACTTTTCTTTGCACAAATATGAGCCAACATTATGTTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716855" ref_strand="+" ref_description="SGN-E716855 [FB18AH11]">
      <seq>aaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32437" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32137" g_stop="32106" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="95" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="330" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31037" g_stop="30743" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="625" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="638"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E716855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32137" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278063" ref_strand="-" ref_description="SGN-E278063 [cLER-4-K3]">
      <seq>aaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaccccaaaaaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31737" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31437" g_stop="31235" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30743" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="498" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="514"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E278063" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278063" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31437" e_stop="31235"/>
          <exon e_start="31037" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCACCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234732" ref_strand="+" ref_description="SGN-E234732 [cLEL-6-I23](-)">
      <seq>tggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31660" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31360" g_stop="31235" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30743" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="421" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="434"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E234732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31360" e_stop="31235"/>
          <exon e_start="31037" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>TGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235020" ref_strand="+" ref_description="SGN-E235020 [cLEL-6-I23](-)">
      <seq>ctatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaaaagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31640" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31340" g_stop="31235" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30743" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="401" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="414"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E235020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31340" e_stop="31235"/>
          <exon e_start="31037" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>CTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAAAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219865" ref_strand="+" ref_description="SGN-E219865 [cLEL-24-O17](-)">
      <seq>aagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaacccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31589" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31289" g_stop="31235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30743" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="350" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="366"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E219865" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31289" e_stop="31235"/>
          <exon e_start="31037" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217997" ref_strand="+" ref_description="SGN-E217997 [cLEL-23-G3](-)">
      <seq>aaacaatttaataaggcagagcaatggaatgttaaagtttactaaatatttttacttttctttgtgaaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttggagcatcccttttttaatctatgtgtatcttttaatgaaacggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacacacagctggatctccccaaaccccaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31314" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31014" g_stop="30743" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="277" polyA_stop="296"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E217997" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31014" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AAACAATTTAATAAGGCAGAGCAATGGAATGTTAAAGTTTACTAAATATTTTTACTTTTCTTTGTGAAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGAGCATCCCTTTTTTAATCTATGTGTATCTTTTAATGAAACGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACACACAGCTGGATCTCCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218690" ref_strand="+" ref_description="SGN-E218690 [cLEL-18-A7](-)">
      <seq>agagcaatggaatgttaaagtttactaaaaattttaacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtaaataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgactcccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31297" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30997" g_stop="30743" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="269"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E218690" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30997" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AGAGCAATGGAATGTTAAAGTTTACTAAAAATTTTAACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAAATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGACTCCCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238891" ref_strand="+" ref_description="SGN-E238891 [cLEL-9-L99](-)">
      <seq>aatatgagacaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatatatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatccataacatatagctgaatcaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31246" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30946" g_stop="30743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="205" polyA_stop="218"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E238891" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30946" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAA</genome_strand>
        <mrna_strand>AATATGAGACAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATATATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCCATAACATATAGCTGAATCAACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230727" ref_strand="+" ref_description="SGN-E230727 [cLEL-35-A16](-)">
      <seq>tgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatcaaccacccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31600" stop="30446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31300" g_stop="31235" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30746" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="358" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="374"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E230727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31300" e_stop="31235"/>
          <exon e_start="31037" e_stop="30746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCA</genome_strand>
        <mrna_strand>TGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280576" ref_strand="+" ref_description="SGN-E280576 [cLER-1-O20]">
      <seq>ttggaactaatataaccgaccccaacttgcttgggattaaggcatagttgttgttactgtggtatatatatcgatccgaagcttacatttgcttcacttttgaaggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaataacatatagctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31442" stop="30451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31142" g_stop="30751" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E280576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31142" e_stop="30751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATC</genome_strand>
        <mrna_strand>TTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219913" ref_strand="+" ref_description="SGN-E219913 [cLEL-24-O17](-)">
      <seq>acatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgacttttgagggcatggatcaataacatatagctgaatcgtccgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31603" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31303" g_stop="31235" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31037" g_stop="30754" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="353" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="380"/>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E219913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31303" e_stop="31235"/>
          <exon e_start="31037" e_stop="30754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGA</genome_strand>
        <mrna_strand>ACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGACTTTTGAGGGCATGGATCAATAACATATAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341854" ref_strand="-" ref_description="SGN-E341854 [cTOF-9-P19]">
      <seq>gtaggcaaagaaatgctcatgcctaaagatcccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggcccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatcggtgtattggcatttgtccctctaaaaagttgaattttgagggcatggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32632" stop="30468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32332" g_stop="32282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="193" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="427" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31037" g_stop="30768" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="697" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E341854" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32332" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGCAAAGAAATGCTCATGCCTAAAGAT-CCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAA</genome_strand>
        <mrna_strand>GTAGGCAAAGAAATGCTCATGCCTAAAGATCCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGG-CCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254205" ref_strand="+" ref_description="SGN-E254205 [cLEG-34-N17]">
      <seq>cctaaagatccaaatgccaccgttataatgcttgccactggagcgtggaattgctcctttccgttgattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaatctatgtgtatcttttaatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32611" stop="30521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32311" g_stop="32282" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="109" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="172" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="407" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31037" g_stop="30821" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="624" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E254205" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32311" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAAC-TGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATC</genome_strand>
        <mrna_strand>CCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAGCGTGGAATTGCTCCTTTCCGTTGATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391263" ref_strand="+" ref_description="SGN-E391263 [TUS-47-I19](-)">
      <seq>ttccctgtgtgtcaagaggcttgtgtacaccaatgacaaaggggaagaagttaaaggagtttgctcaaacttcttatgtgacttgaagcctggagcagaggtcaagattactggacctgtaggcaaagaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaatttttcctttgaaattttaatttcattttttgggacttccctttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32892" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32592" g_stop="32516" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32373" g_stop="32282" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="169" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="247" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="545" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31037" g_stop="30838" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="745" r_length="200" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E391263" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32592" e_stop="32516"/>
          <exon e_start="32373" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTATGTAAGAACTCACGACTCCCTAATTTCATAGGCGATGTTAAGGTTTATCCATTTTATTTTAGTTCGACTATTCATAATATATAGTAGGAGTACTAGCTTCTGCTTGTTCTATACTTATGAAACTACAAATGTTACGATATCAGGTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGT</genome_strand>
        <mrna_strand>TTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTAT..............................................................................................................................................GTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250992" ref_strand="+" ref_description="SGN-E250992 [cLEG-17-G9]">
      <seq>ttcggtgactccaaaactgtttccctgtgtgtcaagaggcttgtgtacaccaatgacaaaggggaagaagttaaaggagtttgctcaaacttcttatgtgacttgaagcctggagcagaggtcaagattactggacctgtaggcaaagaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaagaaggcagagcaatggaatgttgaagtttactaaatatttttacttttctttgtacaaatatgagccaacattatgcttctctccccctgcatccatgtagataggtaaaattttccttttgaaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32894" stop="30575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32594" g_stop="32516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32373" g_stop="32282" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="267" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="330" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="565" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31037" g_stop="30875" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="729" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E250992" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32594" e_stop="32516"/>
          <exon e_start="32373" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="30875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTATGTAAGAACTCACGACTCCCTAATTTCATAGGCGATGTTAAGGTTTATCCATTTTATTTTAGTTCGACTATTCATAATATATAGTAGGAGTACTAGCTTCTGCTTGTTCTATACTTATGAAACTACAAATGTTACGATATCAGGTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCC-TTTGAAATTTTA</genome_strand>
        <mrna_strand>GTTTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTAT..............................................................................................................................................GTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAAATTTTCCTTTTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285828" ref_strand="+" ref_description="SGN-E285828 [cLES-5-P11]">
      <seq>gctcctttccggtcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaagagatggtattgtctgggcggactacaagaagcaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32462" stop="30703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32162" g_stop="32106" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="120" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31235" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="355" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31037" g_stop="31003" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="390" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E285828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32162" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31235"/>
          <exon e_start="31037" e_stop="31003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATGGTAACATATGTCAAAACTATGTCGTCATTTTTTCCACACATTGATAAAATCCACACACTTTACTCATTCACTCTAAATATGCATTAATCAGTTTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAG</genome_strand>
        <mrna_strand>GCTCCTTTCCGGTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG.....................................................................................................................................................................................................GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291178" ref_strand="+" ref_description="SGN-E291178 [cLET-8-L24]">
      <seq>aaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaacgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttgttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgtgcagagagcacacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaatagatgaaattatgtcttcacttgcagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32622" stop="30940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32322" g_stop="32282" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="182" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31240" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="412" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E291178" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32322" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAG</genome_strand>
        <mrna_strand>AAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAACGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTGTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGTGCAGAGAGCACACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATAGATGAAATTATGTCTTCACTTGCAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263273" ref_strand="+" ref_description="SGN-E263273 [cLEG-62-E11]">
      <seq>ttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaaggtacacaaaataaatatttctttgattgtttctcttcattcttaatttaattggctattcagcatatgctaggaaaagaagtaaaagaaaaaaattgcttggttaccgtcaaagccttctctagtctgaactaaagcaataagtataggccaatatgctgtctatttaagtgttctatctaatgagttcaagttacgcataaaagtaggagttttagatggatgacgcggtgaactataaagtgctatttgagtcaaggatgaatgtttattaaacatttaaaataaccaaacattggtttactcagaaatggttgtgggatttacattgagtatgtagttgttgtagtttattcaaaggttcagcagaatttcattgtagtgttatgtagcaattctttttttaacctccgatcattaatctgctgattgacatggatttggtgttatgtagttcaacggtacagcatggctttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32456" stop="30941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32156" g_stop="31590" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31241" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="797" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E263273" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32156" e_stop="31590"/>
          <exon e_start="31469" e_stop="31241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGC-TTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAA</genome_strand>
        <mrna_strand>TTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397155" ref_strand="+" ref_description="SGN-E397155 [TUS-45-G13]">
      <seq>gaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaataactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32623" stop="30955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32323" g_stop="32282" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="183" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31255" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="398" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E397155" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32323" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
          <exon e_start="31469" e_stop="31255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTC</genome_strand>
        <mrna_strand>GAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAATAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292813" ref_strand="+" ref_description="SGN-E292813 [cLET-11-K7]">
      <seq>agcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="31941" stop="30957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31641" g_stop="31590" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31257" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="265" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E292813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31641" e_stop="31590"/>
          <exon e_start="31469" e_stop="31257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATG</genome_strand>
        <mrna_strand>AGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551166" ref_strand="+" ref_description="SGN-E551166 [TUS-55-J19]">
      <seq>tttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaaggtacacaaaataaatatttctttgattgtttctcttcattcttaatttaattggctattcagcatatgctaggaaaagaagtaaaagaaaaaaattgcttggttaccgtcaaagccttctctagtctgaactaaagcaataagtataggccaatatgctgtctatttaagtgttctatctaatgagttcaagttacgcataaaagtaggagttttagatggatgacgcggtgaactataaagtgctatttgagtcaaggatgaatgtttattaaacatttaaaataaccaaacattggtttactcagaaatggttgtgggatttacattgagtatgtagttgttgtagtttattcaaaggttcagcagaatttcattgtagtgttatgtagcaattctttttttaacctccgatcattaatctgctgattgacatggatttggtgttatgtagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32457" stop="31113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32157" g_stop="31590" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="625" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E551166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32157" e_stop="31590"/>
          <exon e_start="31469" e_stop="31413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTG</genome_strand>
        <mrna_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688983" ref_strand="+" ref_description="SGN-E688983 [t3_tus_55_J19]">
      <seq>tttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaaggtacacaaaataaatatttctttgattgtttctcttcattcttaatttaattggctattcagcatatgctaggaaaagaagtaaaagaaaaaaattgcttggttaccgtcaaagccttctctagtctgaactaaagcaataagtataggccaatatgctgtctatttaagtgttctatctaatgagttcaagttacgcataaaagtaggagttttagatggatgacgcggtgaactataaagtgctatttgagtcaaggatgaatgtttattaaacatttaaaataaccaaacattggtttactcagaaatggttgtgggatttacattgagtatgtagttgttgtagtttattcaaaggttcagcagaatttcattgtagtgttatgtagcaattctttttttaacctccgatcattaatctgctgattgacatggatttggtgttatgtagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32457" stop="31113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32157" g_stop="31590" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="625" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E688983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32157" e_stop="31590"/>
          <exon e_start="31469" e_stop="31413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTG</genome_strand>
        <mrna_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280058" ref_strand="-" ref_description="SGN-E280058 [cLEL-7-N11](-)">
      <seq>gcacgagcaaaggggaagaagttaaaggagtttgctcaaacttcttatgtgagttgaagcctggagcatagctcaccattactggacctgtaggcaaagaaatgctcatgcctaaagatccaaatgccaccgttataatgcttgccactggaactggaattgctcctttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaagttcaacggtacagcatggcttttcttgggtgttcccaccatcagctcactactttacaaggaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32860" stop="31289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32563" g_stop="32516" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142">
            <donor d_prob="0.550" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32373" g_stop="32282" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="140" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32183" g_stop="32106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="218" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31652" g_stop="31590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-E280058" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280058" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32563" e_stop="32516"/>
          <exon e_start="32373" e_stop="32282"/>
          <exon e_start="32183" e_stop="32106"/>
          <exon e_start="31652" e_stop="31590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTATGTAAGAACTCACGACTCCCTAATTTCATAGGCGATGTTAAGGTTTATCCATTTTATTTTAGTTCGACTATTCATAATATATAGTAGGAGTACTAGCTTCTGCTTGTTCTATACTTATGAAACTACAAATGTTACGATATCAGGTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATGGTGAATTTTGTTTGTAGCTACATTGTTGTCATCTCAGATATATCTGCTGCCTGTCAATTTGACTTATGCATTATTTTTAATTTGAATTTGTGTCTCAGCTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG</genome_strand>
        <mrna_strand>GCACGAGCAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTAT..............................................................................................................................................GTGAGTTGAAGCCTGGAGCATAGCTCACCATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG..................................................................................................CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCATCAGCTCACTACTTTACAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>88</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2389" PGL_stop="893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2389" e_stop="893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2389" e_stop="893" e_length="1497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2389" stop="1701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2389" stop="2168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2366" stop="1699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2366" stop="1826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2326" stop="1498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2315" stop="1868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2314" stop="1930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2308" stop="1808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2208" stop="1487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1648" stop="893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATT</gDNA_template>
            <first_frame> F  T  F  G  L  T  T  P  F  Y  I  L  T  S  N  P  N  R  H  P  H  P  T  L  T  S  P  *  L  H  L  Q  A  S  Q  M  A  S  V  E  D  Q  A  V  V  Y  N  D  D  D  L  D  D  E  E  D  D  E  E  S  G  H  P  Q  N  E  A  V  V  D  E  D  D  D  V  D  V  D  E  E  E  E  E  E  D  D  S  T  S  S  P  P  V  P  V  A  N  H  S  V  A  G  E  V  T  I  A  V  V  G  V  P  A  T  D  S  L  C  I  E  P  K  R  E  R  I  N  D  F  G  V  T  P  A  T  M  V  V  E  E  K  K  P  L  V  L  D  D  S  R  K  L  F  Q  R  L  W  M  D  E  D  E  I  E  L  L  Q  G  F  L  E  Y  T  T  Q  R  G  G  I  N  S  S  S  H  H  H  H  D  T  G  A  F  Y  D  Q  I  K  N  K  L  Q  L  D  F  N  K  N  Q  L  V  E  K  L  R  R  L  K  K  K  Y  R  T  V  M  S  K  M  G  S  G  K  E  F  V  F  K  S  P  H  D  Q  A  T  F  E  I  S  R  K  I  W  S  N  A  G  P  I  V  V  R  S  S  G  P  P  P  P  P  P  A  D  D  G  G  F  D  D  E  D  S  H  L  N  L  N  H  A  N  F  I  D  H  T  P  N  F  N  L  N  P  N  G  F  D  V  K  T  S  K  S  K  K  R  P  R  G  G  E  E  K  P  G  Y  I  Q  Q  Y  Y  H  Q  S  S  G  G  G  T  N  V  I  L  P  P  T  P  V  S  M  A  A  P  Q  A  T  A  T  A  T  A  A  A  S  I  P  S  L  I  E  E  T  V  R  S  C  L  S  P  I  F  K  E  L  F  N  N  L  N  G  S  R  Y  S  G  F  G  M  S  L  G  P  S  P  L  V  G  F  G  N  S  L  M  S  C  D  I  N  M  K  T  D  E  K  W  R  K  Q  Q  I  L  E  L  E  V  Y  S  K  R  L  E  L  V  Q  D  Q  I  K  A  Q  L  E  E  L  R  S  M  N  S  *  T  M  V  Y  P  F  L  I  L  V  E  F  Y  N  N  S  C  *  W  M  I  L  P  D  C  E  N  S  *  L  F  Y  L  H  N  C  E  G  C  L  D  I </first_frame>
            <second_frame>  L  L  S  A  *  P  P  P  F  T  S  *  P  R  T  L  I  A  T  P  T  Q  P  S  P  H  P  N  Y  T  F  K  L  L  K  W  L  P  *  K  I  R  P  S  S  T  T  M  M  I  L  T  M  R  K  M  M  K  R  A  V  I  P  R  T  K  P  L  L  M  K  M  T  T  *  M  S  M  R  R  R  R  K  R  T  I  P  L  P  L  L  P  C  P  L  R  T  I  P  S  P  E  R  L  L  *  P  L  S  V  S  L  Q  L  I  H  F  V  L  N  Q  N  E  S  G  S  T  I  S  A  L  L  R  P  R  W  L  W  K  K  K  S  P  *  F  W  M  I  L  A  S  F  F  N  G  C  G  W  M  K  M  R  S  N  C  Y  K  D  F  W  N  T  Q  P  S  A  V  G  *  I  H  L  R  I  I  I  M  I  Q  V  R  S  M  T  K  S  R  T  S  C  S  W  I  S  T  R  I  N  *  *  R  S  *  G  D  *  R  R  S  I  G  Q  *  *  A  R  W  D  L  V  R  N  L  C  L  R  A  L  T  I  K  P  P  S  R  S  L  A  R  S  G  A  M  P  D  Q  L  S  S  V  A  V  V  P  H  H  H  H  Q  Q  M  M  V  D  L  M  M  R  I  H  I  S  T  L  T  T  Q  I  S  L  I  T  P  L  T  S  I  L  I  L  T  G  L  M  L  K  L  L  S  R  K  K  G  L  E  E  E  K  K  N  P  G  I  F  N  S  T  I  I  S  H  L  V  E  E  Q  M  S  F  S  P  Q  L  R  S  R  W  P  P  P  R  P  Q  P  Q  L  Q  L  Q  L  Q  F  L  V  *  S  R  K  L  *  G  A  V  Y  H  P  F  S  R  N  C  L  T  I  *  M  D  L  D  I  L  G  S  E  C  H  W  V  H  P  L  *  *  D  L  G  T  V  *  *  A  V  I  S  I  *  R  R  M  R  N  G  G  S  N  R  F  W  N  W  K  F  I  Q  R  D  *  S  L  F  K  I  K  *  R  H  S  W  K  N  S  D  P  *  T  V  R  P  W  F  T  P  F  L  Y  *  *  N  F  I  I  I  L  V  D  G  *  Y  Y  Q  I  A  K  I  A  N  C  S  I  Y  I  I  V  K  A  V  *  I   </second_frame>
            <third_frame>   Y  F  R  P  N  H  P  L  L  H  L  N  L  E  P  *  S  P  P  P  P  N  P  H  L  T  L  I  T  P  S  S  F  S  N  G  F  R  R  R  S  G  R  R  L  Q  R  *  *  S  *  R  *  G  R  *  *  R  E  R  S  S  P  E  R  S  R  C  *  *  R  *  R  R  R  C  R  *  G  G  G  G  R  G  R  F  H  F  L  S  S  R  A  R  C  E  P  F  R  R  R  R  G  Y  Y  S  R  C  R  C  P  C  N  *  F  T  L  Y  *  T  K  T  R  A  D  Q  R  F  R  R  Y  S  G  H  D  G  C  G  R  K  K  A  L  S  F  G  *  F  S  Q  A  F  S  T  A  V  D  G  *  R  *  D  R  I  V  T  R  I  S  G  I  H  N  P  A  R  W  D  K  F  I  F  A  S  S  S  *  Y  R  C  V  L  *  P  N  Q  E  Q  A  A  V  G  F  Q  Q  E  S  I  S  R  E  A  E  E  I  E  E  E  V  S  D  S  D  E  Q  D  G  I  W  *  G  I  C  V  *  E  P  S  R  S  S  H  L  R  D  L  S  Q  D  L  E  Q  C  R  T  N  C  R  P  *  Q  W  S  P  T  T  T  T  S  R  *  W  W  I  *  *  *  G  F  T  S  Q  P  *  P  R  K  F  H  *  S  H  P  *  L  Q  S  *  S  *  R  V  *  C  *  N  F  *  V  E  K  K  A  S  R  R  R  R  K  T  R  V  Y  S  T  V  L  S  S  V  I  W  W  R  N  K  C  H  S  P  P  N  S  G  L  D  G  R  P  P  G  H  S  H  S  Y  S  C  S  F  N  S  *  F  D  R  G  N  C  E  E  L  S  I  T  H  F  Q  G  I  V  *  Q  F  E  W  I  *  I  F  W  V  R  N  V  I  G  S  I  P  F  S  R  I  W  E  Q  F  N  E  L  *  Y  Q  Y  E  D  G  *  E  M  E  E  A  T  D  S  G  I  G  S  L  F  K  E  I  R  A  C  S  R  S  N  K  G  T  V  G  R  T  Q  I  H  E  Q  L  D  H  G  L  P  L  S  Y  T  S  R  I  L  *  *  F  L  L  M  D  D  I  T  R  L  R  K  *  L  I  V  L  F  T  *  L  *  R  L  F  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2305" stop="1019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLQASQMASVEDQAVVYNDDDLDDEEDDEESGHPQNEAVVDEDDDVDVDEEEEEEDDSTSSPPVPVANHSVAGEVTIAVVGVPATDSLCIEPKRERINDFGVTPATMVVEEKKPLVLDDSRKLFQRLWMDEDEIELLQGFLEYTTQRGGINSSSHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQATFEISRKIWSNAGPIVVRSSGPPPPPPADDGGFDDEDSHLNLNHANFIDHTPNFNLNPNGFDVKTSKSKKRPRGGEEKPGYIQQYYHQSSGGGTNVILPPTPVSMAAPQATATATAAASIPSLIEETVRSCLSPIFKELFNNLNGSRYSGFGMSLGPSPLVGFGNSLMSCDINMKTDEKWRKQQILELEVYSKRLELVQDQIKAQLEELRSMNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1471" PGL_stop="2233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1471" e_stop="2233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="1471" e_stop="2233" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1471" stop="2233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1717" stop="1970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAACATCAAACCCGTTAGGATTAAGATTGAAGTTAGGGGTGTGATCAATGAAATTTGCGTGGTTAAGGTTGAGATGTGAATCCTCATCATCAAATCCACCATCATCTGCTGGTGGTGGTGGTGGGGGACCACTGCTACGGACGACAATTGGTCCGGCATTGCTCCAGATCTTGCGAGAGATCTCGAAGGTGGCTTGATCGTGAGGGCTCTTAAACACAAATTCCTTACCAGATCCCATCTTGCTCATCACTGTCCGATACTTCTTCTTCAATCTCCTCAGCTTCTCTACTAATTGATTCTTGTTGAAATCCAACTGCAGCTTGTTCTTGATTTGGTCATAGAACGCACCTGTATCATGATGATGATGCGAAGATGAATTTATCCCACCGCGCTGGGTTGTGTATTCCAGAAATCCTTGTAACAATTCGATCTCATCTTCATCCATCCACAGCCGTTGAAAAAGCTTGCGAGAATCATCCAAAACTAAGGGCTTTTTTTCTTCCACAACCATCGTGGCCGGAGTAACGCCGAAATCGTTGATCCGCTCTCGTTTTGGTTCAATACAAAGTGAATCAGTTGCAGGGACACCGACAACGGCTATAGTAACCTCTCCGGCGACGGAATGGTTCGCAACGGGCACGGGAGGAGAGGAAGTGGAATCGTCCTCTTCCTCCTCCTCCTCATCGACATCTACGTCGTCATCTTCATCAACAACGGCTTCGTTCTGGGGATGACCGCTCTCTTCATCATCTTCCTCATC</gDNA_template>
            <first_frame> F  *  H  Q  T  R  *  D  *  D  *  S  *  G  C  D  Q  *  N  L  R  G  *  G  *  D  V  N  P  H  H  Q  I  H  H  H  L  L  V  V  V  V  G  D  H  C  Y  G  R  Q  L  V  R  H  C  S  R  S  C  E  R  S  R  R  W  L  D  R  E  G  S  *  T  Q  I  P  Y  Q  I  P  S  C  S  S  L  S  D  T  S  S  S  I  S  S  A  S  L  L  I  D  S  C  *  N  P  T  A  A  C  S  *  F  G  H  R  T  H  L  Y  H  D  D  D  A  K  M  N  L  S  H  R  A  G  L  C  I  P  E  I  L  V  T  I  R  S  H  L  H  P  S  T  A  V  E  K  A  C  E  N  H  P  K  L  R  A  F  F  L  P  Q  P  S  W  P  E  *  R  R  N  R  *  S  A  L  V  L  V  Q  Y  K  V  N  Q  L  Q  G  H  R  Q  R  L  *  *  P  L  R  R  R  N  G  S  Q  R  A  R  E  E  R  K  W  N  R  P  L  P  P  P  P  H  R  H  L  R  R  H  L  H  Q  Q  R  L  R  S  G  D  D  R  S  L  H  H  L  P  H  </first_frame>
            <second_frame>  F  N  I  K  P  V  R  I  K  I  E  V  R  G  V  I  N  E  I  C  V  V  K  V  E  M  *  I  L  I  I  K  S  T  I  I  C  W  W  W  W  W  G  T  T  A  T  D  D  N  W  S  G  I  A  P  D  L  A  R  D  L  E  G  G  L  I  V  R  A  L  K  H  K  F  L  T  R  S  H  L  A  H  H  C  P  I  L  L  L  Q  S  P  Q  L  L  Y  *  L  I  L  V  E  I  Q  L  Q  L  V  L  D  L  V  I  E  R  T  C  I  M  M  M  M  R  R  *  I  Y  P  T  A  L  G  C  V  F  Q  K  S  L  *  Q  F  D  L  I  F  I  H  P  Q  P  L  K  K  L  A  R  I  I  Q  N  *  G  L  F  F  F  H  N  H  R  G  R  S  N  A  E  I  V  D  P  L  S  F  W  F  N  T  K  *  I  S  C  R  D  T  D  N  G  Y  S  N  L  S  G  D  G  M  V  R  N  G  H  G  R  R  G  S  G  I  V  L  F  L  L  L  L  I  D  I  Y  V  V  I  F  I  N  N  G  F  V  L  G  M  T  A  L  F  I  I  F  L  I </second_frame>
            <third_frame>   L  T  S  N  P  L  G  L  R  L  K  L  G  V  *  S  M  K  F  A  W  L  R  L  R  C  E  S  S  S  S  N  P  P  S  S  A  G  G  G  G  G  G  P  L  L  R  T  T  I  G  P  A  L  L  Q  I  L  R  E  I  S  K  V  A  *  S  *  G  L  L  N  T  N  S  L  P  D  P  I  L  L  I  T  V  R  Y  F  F  F  N  L  L  S  F  S  T  N  *  F  L  L  K  S  N  C  S  L  F  L  I  W  S  *  N  A  P  V  S  *  *  *  C  E  D  E  F  I  P  P  R  W  V  V  Y  S  R  N  P  C  N  N  S  I  S  S  S  S  I  H  S  R  *  K  S  L  R  E  S  S  K  T  K  G  F  F  S  S  T  T  I  V  A  G  V  T  P  K  S  L  I  R  S  R  F  G  S  I  Q  S  E  S  V  A  G  T  P  T  T  A  I  V  T  S  P  A  T  E  W  F  A  T  G  T  G  G  E  E  V  E  S  S  S  S  S  S  S  S  S  T  S  T  S  S  S  S  S  T  T  A  S  F  W  G  *  P  L  S  S  S  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1932" stop="2207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSLRESSKTKGFFSSTTIVAGVTPKSLIRSRFGSIQSESVAGTPTTAIVTSPATEWFATGTGGEEVESSSSSSSSSTSTSSSSSTTASFWG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1553" stop="1765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIIKSTIICWWWWWGTTATDDNWSGIAPDLARDLEGGLIVRALKHKFLTRSHLAHHCPILLLQSPQLLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1804" stop="1998"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGHRTHLYHDDDAKMNLSHRAGLCIPEILVTIRSHLHPSTAVEKACENHPKLRAFFLPQPSWPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6001" PGL_stop="4178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6001" e_stop="5668"/>
            <exon e_start="5429" e_stop="4766"/>
            <exon e_start="4611" e_stop="4178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6001" e_stop="5668" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5429" e_stop="4766" e_length="664"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4611" e_stop="4178" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6001" stop="5668"/>
              <exon start="5429" stop="4887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5999" stop="5668"/>
              <exon start="5429" stop="4994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5997" stop="5668"/>
              <exon start="5429" stop="5060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5997" stop="5668"/>
              <exon start="5429" stop="5212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5988" stop="5668"/>
              <exon start="5429" stop="4888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5958" stop="5668"/>
              <exon start="5429" stop="4890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5958" stop="5668"/>
              <exon start="5429" stop="5217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5924" stop="5668"/>
              <exon start="5429" stop="5143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5922" stop="5668"/>
              <exon start="5429" stop="5007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5922" stop="5668"/>
              <exon start="5429" stop="5148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5922" stop="5668"/>
              <exon start="5429" stop="5349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5921" stop="5668"/>
              <exon start="5429" stop="5250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5906" stop="5668"/>
              <exon start="5429" stop="4787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5906" stop="5668"/>
              <exon start="5429" stop="4873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5382" stop="4766"/>
              <exon start="4611" stop="4406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5348" stop="4766"/>
              <exon start="4611" stop="4319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5033" stop="4766"/>
              <exon start="4611" stop="4178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4604" stop="4178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4498" stop="4178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG : GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG : CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</gDNA_template>
            <first_frame> H  T  H  T  P  S  L  I  S  Q  F  L  Y  S  E  R  H  Q  P  P  F  K  F  R  L  I  S  W  V  V  D  V  S  C  L  I  S  S  A  F  L  S  Y  Y  S  T  F  F  R  L  L  P  T  Y  I  P  Y  Q  S  R  I  H  Y  H  H  N  H  C  L  C  F  L  H  C  D  *  A  Y  L  S  T  F  L  F  K  L  P  I  V  K  I  S  M  A  I  S  T  S  L  M  I  L  S  L  L  L  L  T  F  C  Q   : G  I  F  G  A  T  F  T  F  V  N  K  C  D  H  T  V  W  P  G  I  L  G  S  P  K  L  D  S  T  G  F  E  L  T  K  D  T  S  R  S  F  Q  A  P  T  G  W  S  G  R  F  W  G  R  T  G  C  N  F  D  D  S  G  T  G  T  C  A  T  A  D  C  G  S  G  Q  M  E  C  N  G  G  G  A  A  T  P  A  T  L  A  E  F  T  L  G  S  G  S  Q  D  F  Y  D  V  S  L  V  D  G  Y  N  L  P  M  M  V  E  V  S  G  G  S  G  P  C  A  S  T  G  C  N  V  D  L  N  Q  K  C  P  T  E  L  R  A  D  G  G  G  A  C  R  S  A  C  D  A  F  K  T  P  Q  Y  C  C  E  G  A  Y  A  S  P  A  T  C  S  P  S  V  Y  S  Q  M  F  K  L  A  C  P  K  S  Y  S  Y  A  Y  D  D  A  T  S  T  F  T  C  S  N  A  N  Y  I  I  T  F  C  P  S  S  Q  T  S :   K  K  S  S  K  A  D  G  S  T  P  E  S  G  S  E  S  G  S  D  P  E  S  L  P  G  S  E  S  G  S  G  S  G  S  G  A  M  G  Q  T  M  L  A  D  G  S  W  L  A  S  L  A  V  G  S  S  T  S  N  Q  P  S  R  V  I  Q  F  T  P  L  M  V  A  F  V  L  F  I  G  S  L  L  K  L  *  S  F  *  L  Q  L  K  F  H  *  V  *  *  I  R  L  L  I  V  K  *  E  K  R  K  S  K  T  R  Y  K  C  A  S  F  Y  *  T  H  I  V  N  D  S  T  N  Y  I  S  S  S  L  F  F  F  L  L  L  </first_frame>
            <second_frame>  T  L  T  H  P  P  *  F  P  N  S  Y  I  V  S  A  T  S  P  P  S  N  F  V  *  F  L  G  W  S  M  F  L  V  *  F  H  L  H  F  F  L  I  T  L  P  F  S  D  Y  Y  L  L  I  Y  P  T  N  Q  E  S  I  I  T  I  T  I  A  S  A  F  S  T  V  I  K  L  I  Y  Q  H  F  C  S  N  Y  Q  L  *  K  S  L  W  Q  F  P  L  L  *  *  F  S  A  F  F  C  S  P  S  V  K  :  V  Y  L  G  L  R  L  H  L  *  T  S  V  T  I  L  C  G  L  E  F  W  A  V  Q  N  W  I  A  L  V  S  S  *  P  K  T  L  L  V  H  S  K  R  R  L  A  G  L  A  V  S  G  A  E  Q  A  V  I  S  T  I  R  E  P  V  H  V  Q  Q  P  I  A  V  P  D  R  W  S  A  T  A  E  E  L  Q  L  R  R  H  *  Q  S  L  H  S  A  Q  V  R  R  I  S  M  T  *  A  *  W  T  G  T  I  C  L  *  W  W  R  *  V  A  G  R  V  L  A  H  P  R  V  A  T  S  T  *  T  K  N  A  R  R  S  *  G  R  T  V  V  A  L  V  G  A  R  V  M  L  L  R  L  H  S  T  V  V  K  A  L  M  L  H  R  R  R  A  R  R  R  F  T  R  R  C  S  S  *  R  V  Q  N  L  T  A  M  H  M  T  M  R  Q  V  H  S  H  V  L  M  P  I  T  S  S  H  F  V  H  P  L  K  P   : A  K  N  L  Q  K  R  M  D  R  H  L  S  Q  V  L  N  Q  G  Q  I  L  N  H  Y  L  A  L  N  Q  G  Q  D  Q  G  Q  G  R  W  V  R  P  C  *  R  M  D  L  G  *  L  V  W  R  *  E  A  Q  L  V  I  N  L  Q  E  L  F  N  L  H  H  *  W  W  L  L  Y  F  L  *  V  H  F  *  N  Y  R  V  S  N  Y  N  *  N  F  I  E  Y  S  R  *  G  C  *  L  L  N  K  K  K  E  R  A  K  R  G  T  N  V  L  A  S  I  K  L  T  L  *  T  I  P  L  I  T  *  A  H  P  F  S  S  F  S  F  * </second_frame>
            <third_frame>   H  S  H  T  L  L  N  F  P  I  L  I  *  *  A  P  P  A  P  L  Q  I  S  S  N  F  L  G  G  R  C  F  L  F  N  F  I  C  I  S  F  L  L  L  Y  L  F  P  I  T  T  Y  L  Y  T  L  P  I  K  N  P  L  S  P  *  P  L  P  L  L  S  P  L  *  L  S  L  F  I  N  I  F  V  Q  I  T  N  C  E  N  L  Y  G  N  F  H  F  F  D  D  S  Q  P  S  F  A  H  L  L  S  R :   Y  I  W  G  Y  V  Y  I  C  E  Q  V  *  P  Y  C  V  A  W  N  S  G  Q  S  K  T  G  *  H  W  F  R  A  N  Q  R  H  F  S  F  I  P  S  A  D  W  L  V  W  P  F  L  G  P  N  R  L  *  F  R  R  F  G  N  R  Y  M  C  N  S  R  L  R  F  R  T  D  G  V  Q  R  R  R  S  C  N  S  G  D  T  S  R  V  Y  T  R  L  R  F  A  G  F  L  *  R  E  P  S  G  R  V  Q  F  A  Y  D  G  G  G  E  W  R  V  G  S  L  R  I  H  G  L  Q  R  R  L  E  P  K  M  P  D  G  A  K  G  G  R  W  W  R  L  *  E  R  V  *  C  F  *  D  S  T  V  L  L  *  R  R  L  C  F  T  G  D  V  L  A  V  G  L  L  A  D  V  Q  V  S  V  S  K  I  L  Q  L  C  I  *  R  C  D  K  Y  I  H  M  F  *  C  Q  L  H  H  H  I  L  S  I  L  S  N  Q  :  Q  K  I  F  K  S  G  W  I  D  T  *  V  R  F  *  I  R  V  R  S  *  I  I  T  W  L  *  I  R  V  R  I  R  V  R  G  D  G  S  D  H  A  S  G  W  I  L  V  S  *  F  G  G  R  K  L  N  *  *  S  T  F  K  S  Y  S  I  Y  T  T  N  G  G  F  C  T  F  Y  R  F  T  F  E  I  I  E  F  L  I  T  I  K  I  S  L  S  I  V  D  K  V  V  N  C  *  I  R  K  K  K  E  Q  N  E  V  Q  M  C  *  L  L  L  N  S  H  C  K  R  F  H  *  L  H  K  L  I  P  F  L  L  S  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5773" stop="5668"/>
                    <exon start="5429" stop="4766"/>
                    <exon start="4611" stop="4353"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLSTFLFKLPIVKISMAISTSLMILSLLLLTFCQGIFGATFTFVNKCDHTVWPGILGSPKLDSTGFELTKDTSRSFQAPTGWSGRFWGRTGCNFDDSGTGTCATADCGSGQMECNGGGAATPATLAEFTLGSGSQDFYDVSLVDGYNLPMMVEVSGGSGPCASTGCNVDLNQKCPTELRADGGGACRSACDAFKTPQYCCEGAYASPATCSPSVYSQMFKLACPKSYSYAYDDATSTFTCSNANYIITFCPSSQTSKKSSKADGSTPESGSESGSDPESLPGSESGSGSGSGAMGQTMLADGSWLASLAVGSSTSNQPSRVIQFTPLMVAFVLFIGSLLKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6001" stop="5774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTHTPSLISQFLYSERHQPPFKFRLISWVVDVSCLISSAFLSYYSTFFRLLPTYIPYQSRIHYHHNHCLCFLHCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13284" PGL_stop="11222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13284" e_stop="13016"/>
            <exon e_start="12776" e_stop="12229"/>
            <exon e_start="12146" e_stop="11938"/>
            <exon e_start="11720" e_stop="11222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="0.918"/>
          <exon-intron don_prob="0.999" acc_prob="0.790" e_score="0.938"/>
          <exon-intron don_prob="0.331" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="13284" e_stop="13016" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13015" i_stop="12777" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="12776" e_stop="12229" e_length="548"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.790">
            <gDNA_intron_boundary i_start="12228" i_stop="12147" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.923">
            <gDNA_exon_boundary e_start="12146" e_stop="11938" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.331" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11937" i_stop="11721" i_length="217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11720" e_stop="11222" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13284" stop="13016"/>
              <exon start="12776" stop="12747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13220" stop="13016"/>
              <exon start="12776" stop="12229"/>
              <exon start="12146" stop="12008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13123" stop="13016"/>
              <exon start="12776" stop="12229"/>
              <exon start="12146" stop="11944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12555" stop="12229"/>
              <exon start="12146" stop="11938"/>
              <exon start="11720" stop="11519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12555" stop="12229"/>
              <exon start="12146" stop="11938"/>
              <exon start="11720" stop="11519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11639" stop="11222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11602" stop="11222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGATCATACTATGAAGTTAGACAGGGTGGCAGCAGATATTCCAATAGTGCGGAGACATCGTAGCAGCTTCCGCCATATGACGCTGATTGGATCAGATGGTTCTCAGCGCAATTTTATTGTTCAGTCATCTTTAACACCAAATGCCAGAATTGATGAGCGGATCCTACAGCTTTTCCGTATGATGAATCGGATGTTTGAGAAGCACATGGAGTCCGGCAGCGGCACATCTGCATTCACACCCCTATTATTATACCCGTACAGCCACAG : GTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTGGAGGTTTATGAGAACCATTGTGCAAAAAATGACCAAGAAGCAGACTTACCAATCACATTTTTCAAGAAGCAACTCAACCAAGCAATATCTGGATAGATCTCACCAGGTGCTGTTGTTGATCTCCGTCTTCAAGCATATAATGAGATCGTAAAAAGTTTTGCCACAGAAAGCATATTCTCACAGTATATGTTCAAAACACTCTTGAGTGGCAATCACATGTGGGCTTTCAAAAGCAGTTTGTAATCCAGTTGGCACTTTCTAGTTTTATGTTGTTCATGCTCCAAATTGGTGGAAGGTCTCCAAACAAGATAGTATTTGCTAAAAACACCGAAAAAATTTTCCAGACCGATTTCCATCCTGCTTATGATGCAAATGGAATGATTGAATTTAATGAGCCAGTGCCATTCCTGACCAGAAATTTGCAAGCGTTTTTCTCTCATTTTGGAGTAGAAGGCTTAGTTGTTTCTGCCGTGTGTGCTGCTGCTCAGGCTGTGGTCTCTCCTAAA : CAAAGCCAGCTCTTATGGTATCATCTGGCAATTTTTTTTCGAGATGAGTTGCTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTGGCCGCTGTTGTATGTTCAGGTAATCCGAACCTTGTGGACTTAAAACAAAAAGTCACTACAAATGTTGAGAATGTCTTTGGGCTGATCAATGGAATAGCCCCTCAATACATCTCAGAAGA : GGAGAAGAATGGCATGGATCCGCCACAATGTGTGCAGAGGGGTGTAGGGGAGTTGGTTGAAGCTGCCCTTACTCCCAGGAACTTGTGCATGATGGATCCGACGGCGGCATCCTTGGTTCTGATTTTTTTTTCTAATTTAATATTTGTGTTATGCCAACTTTTAGGTGTCTAATAGTGTAATGTAACATCAATTAGTGACTGTATAGTCTCTTTTATTTACCTTTAGGTGATGCGAGCTAGATAAGCATATAAATTTCTTCCTCCAGTGTTCTTCTGATGCTTCGCTTTCTGAGTTGGCAACCCCTTCAAGTGCAAGTGCAAGACACCTGGTGATGCAGCCTCAACAACATTGCACCCTTAAGTTCCTTGTATAAGAAAATCTGAACCTTTTCGATTTGAGGTTAGATCCAGTTATCATCTTGATGACCTCTTTCAGCTTCATTTACTTTTTGTAGTGAATGGGTGTCTGCTTTTCCATTAGCGATGGCTTCTTGGATTG</gDNA_template>
            <first_frame> P  D  H  T  M  K  L  D  R  V  A  A  D  I  P  I  V  R  R  H  R  S  S  F  R  H  M  T  L  I  G  S  D  G  S  Q  R  N  F  I  V  Q  S  S  L  T  P  N  A  R  I  D  E  R  I  L  Q  L  F  R  M  M  N  R  M  F  E  K  H  M  E  S  G  S  G  T  S  A  F  T  P  L  L  L  Y  P  Y  S  H  R :   F  A  W  *  R  M  I  *  C  T  A  L  S  W  R  F  M  R  T  I  V  Q  K  M  T  K  K  Q  T  Y  Q  S  H  F  S  R  S  N  S  T  K  Q  Y  L  D  R  S  H  Q  V  L  L  L  I  S  V  F  K  H  I  M  R  S  *  K  V  L  P  Q  K  A  Y  S  H  S  I  C  S  K  H  S  *  V  A  I  T  C  G  L  S  K  A  V  C  N  P  V  G  T  F  *  F  Y  V  V  H  A  P  N  W  W  K  V  S  K  Q  D  S  I  C  *  K  H  R  K  N  F  P  D  R  F  P  S  C  L  *  C  K  W  N  D  *  I  *  *  A  S  A  I  P  D  Q  K  F  A  S  V  F  L  S  F  W  S  R  R  L  S  C  F  C  R  V  C  C  C  S  G  C  G  L  S  *   : T  K  P  A  L  M  V  S  S  G  N  F  F  S  R  *  V  A  I  L  V  L  E  K  T  S  W  D  A  S  G  R  C  C  M  F  R  *  S  E  P  C  G  L  K  T  K  S  H  Y  K  C  *  E  C  L  W  A  D  Q  W  N  S  P  S  I  H  L  R  R  :  G  E  E  W  H  G  S  A  T  M  C  A  E  G  C  R  G  V  G  *  S  C  P  Y  S  Q  E  L  V  H  D  G  S  D  G  G  I  L  G  S  D  F  F  F  *  F  N  I  C  V  M  P  T  F  R  C  L  I  V  *  C  N  I  N  *  *  L  Y  S  L  F  Y  L  P  L  G  D  A  S  *  I  S  I  *  I  S  S  S  S  V  L  L  M  L  R  F  L  S  W  Q  P  L  Q  V  Q  V  Q  D  T  W  *  C  S  L  N  N  I  A  P  L  S  S  L  Y  K  K  I  *  T  F  S  I  *  G  *  I  Q  L  S  S  *  *  P  L  S  A  S  F  T  F  C  S  E  W  V  S  A  F  P  L  A  M  A  S  W  I  </first_frame>
            <second_frame>  Q  I  I  L  *  S  *  T  G  W  Q  Q  I  F  Q  *  C  G  D  I  V  A  A  S  A  I  *  R  *  L  D  Q  M  V  L  S  A  I  L  L  F  S  H  L  *  H  Q  M  P  E  L  M  S  G  S  Y  S  F  S  V  *  *  I  G  C  L  R  S  T  W  S  P  A  A  A  H  L  H  S  H  P  Y  Y  Y  T  R  T  A  T   : G  S  H  G  R  G  *  F  D  V  Q  H  F  P  G  G  L  *  E  P  L  C  K  K  *  P  R  S  R  L  T  N  H  I  F  Q  E  A  T  Q  P  S  N  I  W  I  D  L  T  R  C  C  C  *  S  P  S  S  S  I  *  *  D  R  K  K  F  C  H  R  K  H  I  L  T  V  Y  V  Q  N  T  L  E  W  Q  S  H  V  G  F  Q  K  Q  F  V  I  Q  L  A  L  S  S  F  M  L  F  M  L  Q  I  G  G  R  S  P  N  K  I  V  F  A  K  N  T  E  K  I  F  Q  T  D  F  H  P  A  Y  D  A  N  G  M  I  E  F  N  E  P  V  P  F  L  T  R  N  L  Q  A  F  F  S  H  F  G  V  E  G  L  V  V  S  A  V  C  A  A  A  Q  A  V  V  S  P  K  :  Q  S  Q  L  L  W  Y  H  L  A  I  F  F  R  D  E  L  L  S  W  S  W  R  R  P  L  G  M  P  L  A  A  V  V  C  S  G  N  P  N  L  V  D  L  K  Q  K  V  T  T  N  V  E  N  V  F  G  L  I  N  G  I  A  P  Q  Y  I  S  E  E :   E  K  N  G  M  D  P  P  Q  C  V  Q  R  G  V  G  E  L  V  E  A  A  L  T  P  R  N  L  C  M  M  D  P  T  A  A  S  L  V  L  I  F  F  S  N  L  I  F  V  L  C  Q  L  L  G  V  *  *  C  N  V  T  S  I  S  D  C  I  V  S  F  I  Y  L  *  V  M  R  A  R  *  A  Y  K  F  L  P  P  V  F  F  *  C  F  A  F  *  V  G  N  P  F  K  C  K  C  K  T  P  G  D  A  A  S  T  T  L  H  P  *  V  P  C  I  R  K  S  E  P  F  R  F  E  V  R  S  S  Y  H  L  D  D  L  F  Q  L  H  L  L  F  V  V  N  G  C  L  L  F  H  *  R  W  L  L  G  L </second_frame>
            <third_frame>   R  S  Y  Y  E  V  R  Q  G  G  S  R  Y  S  N  S  A  E  T  S  *  Q  L  P  P  Y  D  A  D  W  I  R  W  F  S  A  Q  F  Y  C  S  V  I  F  N  T  K  C  Q  N  *  *  A  D  P  T  A  F  P  Y  D  E  S  D  V  *  E  A  H  G  V  R  Q  R  H  I  C  I  H  T  P  I  I  I  P  V  Q  P  Q  :  V  R  M  V  E  D  D  L  M  Y  S  T  F  L  E  V  Y  E  N  H  C  A  K  N  D  Q  E  A  D  L  P  I  T  F  F  K  K  Q  L  N  Q  A  I  S  G  *  I  S  P  G  A  V  V  D  L  R  L  Q  A  Y  N  E  I  V  K  S  F  A  T  E  S  I  F  S  Q  Y  M  F  K  T  L  L  S  G  N  H  M  W  A  F  K  S  S  L  *  S  S  W  H  F  L  V  L  C  C  S  C  S  K  L  V  E  G  L  Q  T  R  *  Y  L  L  K  T  P  K  K  F  S  R  P  I  S  I  L  L  M  M  Q  M  E  *  L  N  L  M  S  Q  C  H  S  *  P  E  I  C  K  R  F  S  L  I  L  E  *  K  A  *  L  F  L  P  C  V  L  L  L  R  L  W  S  L  L  N :   K  A  S  S  Y  G  I  I  W  Q  F  F  F  E  M  S  C  Y  L  G  L  G  E  D  L  L  G  C  L  W  P  L  L  Y  V  Q  V  I  R  T  L  W  T  *  N  K  K  S  L  Q  M  L  R  M  S  L  G  *  S  M  E  *  P  L  N  T  S  Q  K   : R  R  R  M  A  W  I  R  H  N  V  C  R  G  V  *  G  S  W  L  K  L  P  L  L  P  G  T  C  A  *  W  I  R  R  R  H  P  W  F  *  F  F  F  L  I  *  Y  L  C  Y  A  N  F  *  V  S  N  S  V  M  *  H  Q  L  V  T  V  *  S  L  L  F  T  F  R  *  C  E  L  D  K  H  I  N  F  F  L  Q  C  S  S  D  A  S  L  S  E  L  A  T  P  S  S  A  S  A  R  H  L  V  M  Q  P  Q  Q  H  C  T  L  K  F  L  V  *  E  N  L  N  L  F  D  L  R  L  D  P  V  I  I  L  M  T  S  F  S  F  I  Y  F  L  *  *  M  G  V  C  F  S  I  S  D  G  F  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12591" stop="12229"/>
                    <exon start="12146" stop="11938"/>
                    <exon start="11720" stop="11549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRKKFCHRKHILTVYVQNTLEWQSHVGFQKQFVIQLALSSFMLFMLQIGGRSPNKIVFAKNTEKIFQTDFHPAYDANGMIEFNEPVPFLTRNLQAFFSHFGVEGLVVSAVCAAAQAVVSPKQSQLLWYHLAIFFRDELLSWSWRRPLGMPLAAVVCSGNPNLVDLKQKVTTNVENVFGLINGIAPQYISEEEKNGMDPPQCVQRGVGELVEAALTPRNLCMMDPTAASLVLIFFSNLIFVLCQLLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13284" stop="13016"/>
                    <exon start="12776" stop="12764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDHTMKLDRVAADIPIVRRHRSSFRHMTLIGSDGSQRNFIVQSSLTPNARIDERILQLFRMMNRMFEKHMESGSGTSAFTPLLLYPYSHRFAW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="11233" PGL_stop="11861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11233" e_stop="11861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="11233" e_stop="11861" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11233" stop="11861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCATCGCTAATGGAAAAGCAGACACCCATTCACTACAAAAAGTAAATGAAGCTGAAAGAGGTCATCAAGATGATAACTGGATCTAACCTCAAATCGAAAAGGTTCAGATTTTCTTATACAAGGAACTTAAGGGTGCAATGTTGTTGAGGCTGCATCACCAGGTGTCTTGCACTTGCACTTGAAGGGGTTGCCAACTCAGAAAGCGAAGCATCAGAAGAACACTGGAGGAAGAAATTTATATGCTTATCTAGCTCGCATCACCTAAAGGTAAATAAAAGAGACTATACAGTCACTAATTGATGTTACATTACACTATTAGACACCTAAAAGTTGGCATAACACAAATATTAAATTAGAAAAAAAAATCAGAACCAAGGATGCCGCCGTCGGATCCATCATGCACAAGTTCCTGGGAGTAAGGGCAGCTTCAACCAACTCCCCTACACCCCTCTGCACACATTGTGGCGGATCCATGCCATTCTTCTCCGCCAAACACAACAATGTCACAATGCAGGCATTTAGATATTAACTGAAGCCAAACTTATCTAAGCATATGACTTCAGTCACACGCAGATGTCTATATAATCTAAGAATACTCAGGAGATGGCTAATGCTTGATTTTATTGAA</gDNA_template>
            <first_frame> A  I  A  N  G  K  A  D  T  H  S  L  Q  K  V  N  E  A  E  R  G  H  Q  D  D  N  W  I  *  P  Q  I  E  K  V  Q  I  F  L  Y  K  E  L  K  G  A  M  L  L  R  L  H  H  Q  V  S  C  T  C  T  *  R  G  C  Q  L  R  K  R  S  I  R  R  T  L  E  E  E  I  Y  M  L  I  *  L  A  S  P  K  G  K  *  K  R  L  Y  S  H  *  L  M  L  H  Y  T  I  R  H  L  K  V  G  I  T  Q  I  L  N  *  K  K  K  S  E  P  R  M  P  P  S  D  P  S  C  T  S  S  W  E  *  G  Q  L  Q  P  T  P  L  H  P  S  A  H  I  V  A  D  P  C  H  S  S  P  P  N  T  T  M  S  Q  C  R  H  L  D  I  N  *  S  Q  T  Y  L  S  I  *  L  Q  S  H  A  D  V  Y  I  I  *  E  Y  S  G  D  G  *  C  L  I  L  L   </first_frame>
            <second_frame>  P  S  L  M  E  K  Q  T  P  I  H  Y  K  K  *  M  K  L  K  E  V  I  K  M  I  T  G  S  N  L  K  S  K  R  F  R  F  S  Y  T  R  N  L  R  V  Q  C  C  *  G  C  I  T  R  C  L  A  L  A  L  E  G  V  A  N  S  E  S  E  A  S  E  E  H  W  R  K  K  F  I  C  L  S  S  S  H  H  L  K  V  N  K  R  D  Y  T  V  T  N  *  C  Y  I  T  L  L  D  T  *  K  L  A  *  H  K  Y  *  I  R  K  K  N  Q  N  Q  G  C  R  R  R  I  H  H  A  Q  V  P  G  S  K  G  S  F  N  Q  L  P  Y  T  P  L  H  T  L  W  R  I  H  A  I  L  L  R  Q  T  Q  Q  C  H  N  A  G  I  *  I  L  T  E  A  K  L  I  *  A  Y  D  F  S  H  T  Q  M  S  I  *  S  K  N  T  Q  E  M  A  N  A  *  F  Y  *  </second_frame>
            <third_frame>   H  R  *  W  K  S  R  H  P  F  T  T  K  S  K  *  S  *  K  R  S  S  R  *  *  L  D  L  T  S  N  R  K  G  S  D  F  L  I  Q  G  T  *  G  C  N  V  V  E  A  A  S  P  G  V  L  H  L  H  L  K  G  L  P  T  Q  K  A  K  H  Q  K  N  T  G  G  R  N  L  Y  A  Y  L  A  R  I  T  *  R  *  I  K  E  T  I  Q  S  L  I  D  V  T  L  H  Y  *  T  P  K  S  W  H  N  T  N  I  K  L  E  K  K  I  R  T  K  D  A  A  V  G  S  I  M  H  K  F  L  G  V  R  A  A  S  T  N  S  P  T  P  L  C  T  H  C  G  G  S  M  P  F  F  S  A  K  H  N  N  V  T  M  Q  A  F  R  Y  *  L  K  P  N  L  S  K  H  M  T  S  V  T  R  R  C  L  Y  N  L  R  I  L  R  R  W  L  M  L  D  F  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11553" stop="11762"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPKSWHNTNIKLEKKIRTKDAAVGSIMHKFLGVRAASTNSPTPLCTHCGGSMPFFSAKHNNVTMQAFRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24841" PGL_stop="24374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24841" e_stop="24374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24841" e_stop="24374" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24841" stop="24374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAGGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAGGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</gDNA_template>
            <first_frame> Q  N  R  G  V  I  S  N  I  Y  I  S  K  P  V  Q  L  Y  S  M  A  G  D  I  I  W  G  W  N  I  P  G  F  S  Y  W  I  S  A  E  S  R  T  G  H  S  R  F  C  S  G  G  L  V  R  S  F  M  G  S  V  F  L  L  P  R  F  G  N  G  *  I  H  L  R  N  R  *  L  R  L  R  N  I  R  V  H  R  R  S  C  S  A  G  D  F  S  G  V  H  T  Q  R  S  R  W  A  *  L  L  R  R  *  F  S  G  W  L  *  L  A  H  V  N  N  P  T  R  W  N  R  F  R  K  L  F  C  N  W  V  C  G  *  S  E  R  A  M  S  V  G  A  K  A  C  E </first_frame>
            <second_frame>  K  T  G  V  S  S  A  T  F  T  L  V  N  Q  C  S  Y  T  V  W  P  G  I  L  S  G  A  G  T  S  P  V  S  P  T  G  F  Q  L  N  P  G  Q  A  I  P  V  S  V  P  A  G  W  S  G  R  L  W  G  R  S  F  C  S  Q  D  S  A  T  G  K  F  T  C  V  T  G  D  C  G  S  G  T  L  E  C  T  G  G  A  A  P  P  A  T  L  A  E  F  T  L  N  G  A  D  G  L  D  F  Y  D  V  S  L  V  D  G  Y  N  L  P  M  L  I  T  P  Q  G  G  T  G  S  G  N  C  S  A  T  G  C  V  V  D  L  N  G  P  C  P  S  E  L  K  L  V   </second_frame>
            <third_frame>   K  Q  G  C  H  Q  Q  H  L  H  *  *  T  S  A  V  I  Q  Y  G  R  G  Y  Y  L  G  L  E  H  P  R  F  L  L  L  D  F  S  *  I  Q  D  R  P  F  P  F  L  F  R  R  V  G  Q  V  V  Y  G  V  G  L  F  A  P  K  I  R  Q  R  V  N  S  L  A  *  Q  V  I  A  A  P  E  H  *  S  A  P  A  E  L  L  R  R  R  L  *  R  S  S  H  S  T  E  P  M  G  L  T  S  T  T  L  V  *  W  M  V  I  T  C  P  C  *  *  P  H  K  V  E  P  V  P  E  T  V  L  Q  L  G  V  W  L  I  *  T  G  H  V  R  R  S  *  S  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24840" stop="24376"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTGVSSATFTLVNQCSYTVWPGILSGAGTSPVSPTGFQLNPGQAIPVSVPAGWSGRLWGRSFCSQDSATGKFTCVTGDCGSGTLECTGGAAPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLITPQGGTGSGNCSATGCVVDLNGPCPSELKLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30223" PGL_stop="29066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30223" e_stop="29066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="30223" e_stop="29066" e_length="1158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30223" stop="29569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30119" stop="29218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29718" stop="29171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29617" stop="29341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29617" stop="29372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29570" stop="29090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29511" stop="29066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTAACGCCGCCTTTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCACTTTAA</gDNA_template>
            <first_frame> R  *  R  R  L  L  K  R  F  *  T  Q  K  P  Y  L  G  F  P  *  T  S  L  *  *  K  N  K  I  S  V  I  E  L  E  H  S  Q  G  F  C  G  V  P  I  N  R  L  V  R  N  G  G  G  G  I  Q  N  D  R  N  S  F  *  V  Q  *  P  K  G  L  R  F  H  Q  T  *  *  W  I  R  R  S  V  R  S  S  I  R  D  Q  I  *  W  L  P  F  S  L  R  R  P  E  S  G  V  H  H  D  C  E  G  R  *  V  P  G  Y  *  C  H  W  A  R  W  R  S  S  R  *  W  P  Q  W  Q  G  K  *  *  Q  S  W  G  W  G  L  R  L  W  W  *  *  W  W  L  S  E  E  R  Q  *  W  W  V  S  *  R  R  *  V  L  *  L  W  K  D  G  T  F  G  *  G  L  *  S  Q  Q  W  R  W  R  R  W  Q  R  R  V  L  *  L  W  C  C  W  T  F  S  *  G  L  *  P  *  *  W  W  W  W  W  R  R  R  S  K  W  W  C  L  L  H  L  R  W  V  W  P  Y  G  S  R  L  P  E  C  W  T  C  W  R  P  W  W  R  R  *  W  G  L  L  F  M  R  C  T  R  T  L  G  *  R  L  S  R  W  W  W  *  *  F  W  E  I  W  G  W  *  W  R  K  Q  V  L  Q  L  W  R  G  G  P  L  C  *  R  M  H  *  P  I  R  E  L  I  M  *  M  I  F  L  F  I  P  Y  T  L  L  V  L  I  F  L  A  V  T  C  F  S  S  F  S  L  I  S  Y  M  T  G  C  A  F  G  V  A  L  P  S  C  L  N  S  C  S  W  D  A  K  F  *  L  M  I  Y  I  Q  V  Y  K  K  A  E  G  S  I  L  A  L  * </first_frame>
            <second_frame>  A  N  A  A  F  *  N  G  F  R  R  R  N  R  I  *  G  S  P  R  L  L  F  N  K  K  I  K  Y  L  S  *  N  *  N  I  L  K  G  F  A  E  F  R  S  I  D  W  L  G  M  A  V  E  A  S  R  M  T  G  T  V  S  K  F  S  N  P  K  G  Y  G  F  I  K  P  D  D  G  S  E  D  L  F  V  H  Q  S  E  I  K  S  D  G  Y  R  S  L  Y  E  G  Q  K  V  E  F  T  M  T  V  K  G  D  K  Y  Q  A  I  D  V  T  G  P  D  G  A  P  L  D  S  G  R  N  G  R  G  N  S  N  S  R  G  G  G  G  Y  G  Y  G  G  D  D  G  G  Y  R  R  N  G  N  D  G  G  Y  R  S  A  G  E  C  Y  N  C  G  R  T  G  H  L  A  R  D  C  D  R  N  S  G  G  G  G  G  G  R  G  G  C  Y  N  C  G  A  A  G  H  L  A  R  D  C  D  R  S  S  G  G  G  G  G  G  G  G  A  S  G  G  V  C  Y  T  C  G  G  Y  G  H  M  A  R  D  C  P  S  A  G  R  V  G  G  R  G  G  G  G  S  G  A  C  Y  S  C  G  A  Q  G  H  L  A  R  D  C  P  G  G  G  G  S  N  F  G  R  S  G  G  G  S  G  G  S  K  C  Y  N  C  G  E  A  G  H  F  A  R  E  C  T  S  Q  S  V  N  *  S  C  K  *  S  F  S  L  F  P  T  P  S  *  Y  S  F  S  *  Q  *  H  V  F  P  V  F  L  *  L  A  I  *  P  V  V  L  S  E  *  L  Y  R  A  V  *  I  H  V  L  G  M  Q  S  F  S  *  *  F  I  Y  K  Y  I  K  R  L  K  V  R  F  L  H  F   </second_frame>
            <third_frame>   L  T  P  P  F  K  T  V  L  D  A  E  T  V  F  R  V  P  L  D  F  S  L  I  K  K  *  N  I  C  H  R  I  R  T  F  S  R  V  L  R  S  S  D  Q  *  I  G  *  E  W  R  W  R  H  P  E  *  Q  E  Q  F  L  S  S  V  T  Q  R  V  T  V  S  S  N  L  M  M  D  P  K  I  C  S  F  I  N  Q  R  S  N  L  M  A  T  V  L  S  T  K  A  R  K  W  S  S  P  *  L  *  R  E  I  S  T  R  L  L  M  S  L  G  P  M  A  L  L  S  I  V  A  A  M  A  G  E  I  V  T  V  V  G  V  G  V  T  V  M  V  V  M  M  V  V  I  G  G  T  A  M  M  V  G  I  V  A  P  V  S  V  I  T  V  E  G  R  D  I  W  L  G  T  V  I  A  T  V  E  V  E  E  V  A  E  A  G  V  I  T  V  V  L  L  D  I  *  L  G  I  V  T  V  V  V  V  V  V  V  E  E  E  E  Q  V  V  V  S  V  T  L  A  V  G  M  A  I  W  L  E  I  A  R  V  L  D  V  L  A  A  V  V  E  E  V  V  G  L  V  I  H  A  V  H  K  D  T  W  L  E  T  V  P  V  V  V  V  V  I  L  G  D  L  G  V  V  V  E  E  A  S  V  T  T  V  E  R  R  A  T  L  L  E  N  A  L  A  N  P  *  T  D  H  V  N  D  L  S  L  Y  S  L  H  P  L  S  T  H  F  L  S  S  D  M  F  F  Q  F  F  F  D  *  L  Y  D  R  L  C  F  R  S  S  S  T  E  L  F  E  F  M  F  L  G  C  K  V  L  V  N  D  L  Y  T  S  I  *  K  G  *  R  F  D  S  C  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30120" stop="29290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NILKGFAEFRSIDWLGMAVEASRMTGTVSKFSNPKGYGFIKPDDGSEDLFVHQSEIKSDGYRSLYEGQKVEFTMTVKGDKYQAIDVTGPDGAPLDSGRNGRGNSNSRGGGGYGYGGDDGGYRRNGNDGGYRSAGECYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAGHLARDCDRSSGGGGGGGGASGGVCYTCGGYGHMARDCPSAGRVGGRGGGGSGACYSCGAQGHLARDCPGGGGSNFGRSGGGSGGSKCYNCGEAGHFARECTSQSVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32594" PGL_stop="30269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32594" e_stop="32516"/>
            <exon e_start="32373" e_stop="32282"/>
            <exon e_start="32183" e_stop="32106"/>
            <exon e_start="31652" e_stop="31590"/>
            <exon e_start="31469" e_stop="31235"/>
            <exon e_start="31037" e_stop="30605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.550" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32594" e_stop="32516" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.550" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32373" e_stop="32282" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32183" e_stop="32106" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31652" e_stop="31590" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31235" e_length="235"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197"/>
          </intron>
          <exon e_serial="6" e_score="0.934">
            <gDNA_exon_boundary e_start="31037" e_stop="30605" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32594" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32592" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32563" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32354" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32332" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341854" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32323" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32322" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32311" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32162" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="31003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32137" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31641" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31641" stop="31590"/>
              <exon start="31469" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31597" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31460" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31437" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278063" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31380" stop="31235"/>
              <exon start="31037" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31360" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31340" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31303" stop="31235"/>
              <exon start="31037" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31302" stop="31235"/>
              <exon start="31037" stop="30742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31300" stop="31235"/>
              <exon start="31037" stop="30746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31294" stop="31235"/>
              <exon start="31037" stop="30731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31289" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31243" stop="31235"/>
              <exon start="31037" stop="30722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31014" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30946" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30890" stop="30605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTAT : GTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG : CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG : TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG : GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG : GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAGATACAC</gDNA_template>
            <first_frame> V  S  L  C  V  K  R  L  V  Y  T  N  D  K  G  E  E  V  K  G  V  C  S  N  F  L   : C  D  L  K  P  G  A  E  V  K  I  T  G  P  V  G  K  E  M  L  M  P  K  D  P  N  A  T  V  I  M  :  L  A  T  G  T  G  I  A  P  F  R  S  F  L  W  K  M  F  F  E  K  H  E  D  Y  K  :  F  N  G  T  A  W  L  F  L  G  V  P  T  S  S  S  L  L  Y  K  E  :  E  F  E  K  M  K  E  K  A  P  E  N  F  R  L  D  F  A  V  S  R  E  Q  T  N  E  K  G  E  K  M  Y  I  Q  T  R  M  A  Q  Y  A  E  E  L  W  T  L  L  Q  K  D  N  T  F  I  Y  M  C  G  L  K  G  M  E  Q  G  I  D  E  I  M  S  S  L  A  E  R  D   : G  I  V  W  A  D  Y  K  K  Q  L  K  K  A  E  Q  W  N  V  E  V  Y  *  I  F  L  L  F  F  V  Q  I  *  A  N  I  M  L  L  S  P  C  I  H  V  D  R  *  I  F  P  L  K  F  *  F  H  F  L  G  L  P  F  L  N  L  C  V  S  F  N  E  S  V  Y  W  H  L  S  L  *  K  V  E  F  *  G  H  G  S  I  T  Y  S  *  I  N  Q  K  S  Q  Y  L  V  L  F  F  I  F  S  T  T  I  S  F  V  E  V  W  V  Y  V  V  L  Y  E  F  I  I  Y  V  Y  Y  I  K  I  F  I  F  T  R  K  R  Y   </first_frame>
            <second_frame>  F  P  C  V  S  R  G  L  C  T  P  M  T  K  G  K  K  L  K  E  F  A  Q  T  S  Y  :  V  T  *  S  L  E  Q  R  S  R  L  L  D  L  *  A  K  K  C  S  C  L  K  I  Q  M  P  P  L  *  C :   L  P  L  E  L  E  L  L  L  S  V  H  S  C  G  K  C  S  L  R  N  T  R  I  T  S :   S  T  V  Q  H  G  F  S  W  V  F  P  P  A  A  H  Y  F  T  R  R :   N  S  R  K  *  R  R  R  P  Q  K  T  S  D  W  T  L  L  *  A  E  S  K  R  T  K  R  V  K  R  C  T  F  K  P  E  W  L  N  M  L  K  N  Y  G  L  C  S  K  K  T  T  P  S  S  T  C  V  D  S  R  A  W  S  R  E  L  M  K  L  C  L  H  L  Q  K  E  M  :  V  L  S  G  R  T  T  R  S  N  *  R  R  Q  S  N  G  M  L  K  F  T  K  Y  F  Y  F  S  L  Y  K  Y  E  P  T  L  C  F  S  P  P  A  S  M  *  I  G  K  F  F  L  *  N  F  N  F  I  F  W  D  F  P  F  *  I  Y  V  Y  L  L  M  N  R  C  I  G  I  C  P  S  K  K  L  N  F  E  G  M  D  Q  *  H  I  A  E  S  T  K  N  H  N  I  L  F  F  F  S  F  S  Q  L  Q  Y  P  L  L  R  Y  G  S  M  *  F  F  M  N  L  *  F  M  F  I  I  L  R  Y  L  F  L  H  V  K  D  T  </second_frame>
            <third_frame>   F  P  V  C  Q  E  A  C  V  H  Q  *  Q  R  G  R  S  *  R  S  L  L  K  L  L  M :   *  L  E  A  W  S  R  G  Q  D  Y  W  T  C  R  Q  R  N  A  H  A  *  R  S  K  C  H  R  Y  N   : A  C  H  W  N  W  N  C  S  F  P  F  I  P  V  E  N  V  L  *  E  T  R  G  L  Q   : V  Q  R  Y  S  M  A  F  L  G  C  S  H  Q  Q  L  T  T  L  Q  G   : G  I  R  E  N  E  G  E  G  P  R  K  L  Q  I  G  L  C  C  E  Q  R  A  N  E  R  K  G  *  K  D  V  H  S  N  Q  N  G  S  I  C  *  R  T  M  D  F  A  P  K  R  Q  H  L  H  L  H  V  W  T  Q  G  H  G  A  G  N  *  *  N  Y  V  F  T  C  R  K  R  W :   Y  C  L  G  G  L  Q  E  A  I  E  E  G  R  A  M  E  C  *  S  L  L  N  I  F  T  F  L  C  T  N  M  S  Q  H  Y  A  S  L  P  L  H  P  C  R  *  V  N  F  S  F  E  I  L  I  S  F  F  G  T  S  L  F  K  S  M  C  I  F  *  *  I  G  V  L  A  F  V  P  L  K  S  *  I  L  R  A  W  I  N  N  I  *  L  N  Q  P  K  I  T  I  S  C  S  F  F  H  F  L  N  Y  N  I  L  C  *  G  M  G  L  C  S  S  L  *  I  Y  N  L  C  L  L  Y  *  D  I  Y  F  Y  T  *  K  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32594" stop="32516"/>
                    <exon start="32373" stop="32282"/>
                    <exon start="32183" stop="32106"/>
                    <exon start="31652" stop="31590"/>
                    <exon start="31469" stop="31235"/>
                    <exon start="31037" stop="30970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLCVKRLVYTNDKGEEVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHEDYKFNGTAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLQKDNTFIYMCGLKGMEQGIDEIMSSLAERDGIVWADYKKQLKKAEQWNVEVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32157" e_stop="31590"/>
            <exon e_start="31469" e_stop="31235"/>
            <exon e_start="31037" e_stop="30605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32157" e_stop="31590" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31235" e_length="235"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="31037" e_stop="30605" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32157" stop="31590"/>
              <exon start="31469" stop="31413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32157" stop="31590"/>
              <exon start="31469" stop="31413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32156" stop="31590"/>
              <exon start="31469" stop="31241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31641" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31641" stop="31590"/>
              <exon start="31469" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31597" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31460" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31437" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278063" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31235"/>
              <exon start="31037" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31380" stop="31235"/>
              <exon start="31037" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31360" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31340" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31303" stop="31235"/>
              <exon start="31037" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31302" stop="31235"/>
              <exon start="31037" stop="30742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31300" stop="31235"/>
              <exon start="31037" stop="30746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31294" stop="31235"/>
              <exon start="31037" stop="30731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31289" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31243" stop="31235"/>
              <exon start="31037" stop="30722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31014" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30946" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30890" stop="30605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG : GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG : GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAGATACAC</gDNA_template>
            <first_frame> F  P  F  I  P  V  E  N  V  L  *  E  T  R  G  L  Q  G  T  Q  N  K  Y  F  F  D  C  F  S  S  F  L  I  *  L  A  I  Q  H  M  L  G  K  E  V  K  E  K  N  C  L  V  T  V  K  A  F  S  S  L  N  *  S  N  K  Y  R  P  I  C  C  L  F  K  C  S  I  *  *  V  Q  V  T  H  K  S  R  S  F  R  W  M  T  R  *  T  I  K  C  Y  L  S  Q  G  *  M  F  I  K  H  L  K  *  P  N  I  G  L  L  R  N  G  C  G  I  Y  I  E  Y  V  V  V  V  V  Y  S  K  V  Q  Q  N  F  I  V  V  L  C  S  N  S  F  F  N  L  R  S  L  I  C  *  L  T  W  I  W  C  Y  V  V  Q  R  Y  S  M  A  F  L  G  C  S  H  Q  Q  L  T  T  L  Q  G   : G  I  R  E  N  E  G  E  G  P  R  K  L  Q  I  G  L  C  C  E  Q  R  A  N  E  R  K  G  *  K  D  V  H  S  N  Q  N  G  S  I  C  *  R  T  M  D  F  A  P  K  R  Q  H  L  H  L  H  V  W  T  Q  G  H  G  A  G  N  *  *  N  Y  V  F  T  C  R  K  R  W :   Y  C  L  G  G  L  Q  E  A  I  E  E  G  R  A  M  E  C  *  S  L  L  N  I  F  T  F  L  C  T  N  M  S  Q  H  Y  A  S  L  P  L  H  P  C  R  *  V  N  F  S  F  E  I  L  I  S  F  F  G  T  S  L  F  K  S  M  C  I  F  *  *  I  G  V  L  A  F  V  P  L  K  S  *  I  L  R  A  W  I  N  N  I  *  L  N  Q  P  K  I  T  I  S  C  S  F  F  H  F  L  N  Y  N  I  L  C  *  G  M  G  L  C  S  S  L  *  I  Y  N  L  C  L  L  Y  *  D  I  Y  F  Y  T  *  K  I  H </first_frame>
            <second_frame>  F  R  S  F  L  W  K  M  F  F  E  K  H  E  D  Y  K  V  H  K  I  N  I  S  L  I  V  S  L  H  S  *  F  N  W  L  F  S  I  C  *  E  K  K  *  K  K  K  I  A  W  L  P  S  K  P  S  L  V  *  T  K  A  I  S  I  G  Q  Y  A  V  Y  L  S  V  L  S  N  E  F  K  L  R  I  K  V  G  V  L  D  G  *  R  G  E  L  *  S  A  I  *  V  K  D  E  C  L  L  N  I  *  N  N  Q  T  L  V  Y  S  E  M  V  V  G  F  T  L  S  M  *  L  L  *  F  I  Q  R  F  S  R  I  S  L  *  C  Y  V  A  I  L  F  L  T  S  D  H  *  S  A  D  *  H  G  F  G  V  M  *  F  N  G  T  A  W  L  F  L  G  V  P  T  S  S  S  L  L  Y  K  E  :  E  F  E  K  M  K  E  K  A  P  E  N  F  R  L  D  F  A  V  S  R  E  Q  T  N  E  K  G  E  K  M  Y  I  Q  T  R  M  A  Q  Y  A  E  E  L  W  T  L  L  Q  K  D  N  T  F  I  Y  M  C  G  L  K  G  M  E  Q  G  I  D  E  I  M  S  S  L  A  E  R  D   : G  I  V  W  A  D  Y  K  K  Q  L  K  K  A  E  Q  W  N  V  E  V  Y  *  I  F  L  L  F  F  V  Q  I  *  A  N  I  M  L  L  S  P  C  I  H  V  D  R  *  I  F  P  L  K  F  *  F  H  F  L  G  L  P  F  L  N  L  C  V  S  F  N  E  S  V  Y  W  H  L  S  L  *  K  V  E  F  *  G  H  G  S  I  T  Y  S  *  I  N  Q  K  S  Q  Y  L  V  L  F  F  I  F  S  T  T  I  S  F  V  E  V  W  V  Y  V  V  L  Y  E  F  I  I  Y  V  Y  Y  I  K  I  F  I  F  T  R  K  R  Y   </second_frame>
            <third_frame>   S  V  H  S  C  G  K  C  S  L  R  N  T  R  I  T  R  Y  T  K  *  I  F  L  *  L  F  L  F  I  L  N  L  I  G  Y  S  A  Y  A  R  K  R  S  K  R  K  K  L  L  G  Y  R  Q  S  L  L  *  S  E  L  K  Q  *  V  *  A  N  M  L  S  I  *  V  F  Y  L  M  S  S  S  Y  A  *  K  *  E  F  *  M  D  D  A  V  N  Y  K  V  L  F  E  S  R  M  N  V  Y  *  T  F  K  I  T  K  H  W  F  T  Q  K  W  L  W  D  L  H  *  V  C  S  C  C  S  L  F  K  G  S  A  E  F  H  C  S  V  M  *  Q  F  F  F  *  P  P  I  I  N  L  L  I  D  M  D  L  V  L  C  S  S  T  V  Q  H  G  F  S  W  V  F  P  P  A  A  H  Y  F  T  R  R :   N  S  R  K  *  R  R  R  P  Q  K  T  S  D  W  T  L  L  *  A  E  S  K  R  T  K  R  V  K  R  C  T  F  K  P  E  W  L  N  M  L  K  N  Y  G  L  C  S  K  K  T  T  P  S  S  T  C  V  D  S  R  A  W  S  R  E  L  M  K  L  C  L  H  L  Q  K  E  M  :  V  L  S  G  R  T  T  R  S  N  *  R  R  Q  S  N  G  M  L  K  F  T  K  Y  F  Y  F  S  L  Y  K  Y  E  P  T  L  C  F  S  P  P  A  S  M  *  I  G  K  F  F  L  *  N  F  N  F  I  F  W  D  F  P  F  *  I  Y  V  Y  L  L  M  N  R  C  I  G  I  C  P  S  K  K  L  N  F  E  G  M  D  Q  *  H  I  A  E  S  T  K  N  H  N  I  L  F  F  F  S  F  S  Q  L  Q  Y  P  L  L  R  Y  G  S  M  *  F  F  M  N  L  *  F  M  F  I  I  L  R  Y  L  F  L  H  V  K  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31652" stop="31590"/>
                    <exon start="31469" stop="31235"/>
                    <exon start="31037" stop="30970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGTAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLQKDNTFIYMCGLKGMEQGIDEIMSSLAERDGIVWADYKKQLKKAEQWNVEVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32594" e_stop="32516"/>
            <exon e_start="32373" e_stop="32282"/>
            <exon e_start="32183" e_stop="32106"/>
            <exon e_start="31652" e_stop="31590"/>
            <exon e_start="31469" e_stop="31235"/>
            <exon e_start="31037" e_stop="30742"/>
            <exon e_start="30292" e_stop="30269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.550" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32594" e_stop="32516" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.550" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32515" i_stop="32374" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32373" e_stop="32282" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32281" i_stop="32184" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32183" e_stop="32106" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="32105" i_stop="31653" i_length="453"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31652" e_stop="31590" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31235" e_length="235"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31234" i_stop="31038" i_length="197"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31037" e_stop="30742" e_length="296"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30741" i_stop="30293" i_length="449"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="30292" e_stop="30269" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32594" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32592" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32563" stop="32516"/>
              <exon start="32373" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32332" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341854" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32323" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32322" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32311" stop="32282"/>
              <exon start="32183" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32162" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="31003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32137" stop="32106"/>
              <exon start="31652" stop="31590"/>
              <exon start="31469" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31641" stop="31590"/>
              <exon start="31469" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31437" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278063" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31360" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31359" stop="31235"/>
              <exon start="31037" stop="30742"/>
              <exon start="30292" stop="30269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31340" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31303" stop="31235"/>
              <exon start="31037" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31302" stop="31235"/>
              <exon start="31037" stop="30742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31300" stop="31235"/>
              <exon start="31037" stop="30746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31289" stop="31235"/>
              <exon start="31037" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31014" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30946" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCCTGTGTGTCAAGAGGCTTGTGTACACCAATGACAAAGGGGAAGAAGTTAAAGGAGTTTGCTCAAACTTCTTAT : GTGACTTGAAGCCTGGAGCAGAGGTCAAGATTACTGGACCTGTAGGCAAAGAAATGCTCATGCCTAAAGATCCAAATGCCACCGTTATAATG : CTTGCCACTGGAACTGGAATTGCTCCTTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAG : TTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG : GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAAGAGATG : GTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAA : GAAATAAAAAGTAAATAAAAAACA</gDNA_template>
            <first_frame> V  S  L  C  V  K  R  L  V  Y  T  N  D  K  G  E  E  V  K  G  V  C  S  N  F  L   : C  D  L  K  P  G  A  E  V  K  I  T  G  P  V  G  K  E  M  L  M  P  K  D  P  N  A  T  V  I  M  :  L  A  T  G  T  G  I  A  P  F  R  S  F  L  W  K  M  F  F  E  K  H  E  D  Y  K  :  F  N  G  T  A  W  L  F  L  G  V  P  T  S  S  S  L  L  Y  K  E  :  E  F  E  K  M  K  E  K  A  P  E  N  F  R  L  D  F  A  V  S  R  E  Q  T  N  E  K  G  E  K  M  Y  I  Q  T  R  M  A  Q  Y  A  E  E  L  W  T  L  L  Q  K  D  N  T  F  I  Y  M  C  G  L  K  G  M  E  Q  G  I  D  E  I  M  S  S  L  A  E  R  D   : G  I  V  W  A  D  Y  K  K  Q  L  K  K  A  E  Q  W  N  V  E  V  Y  *  I  F  L  L  F  F  V  Q  I  *  A  N  I  M  L  L  S  P  C  I  H  V  D  R  *  I  F  P  L  K  F  *  F  H  F  L  G  L  P  F  L  N  L  C  V  S  F  N  E  S  V  Y  W  H  L  S  L  *  K  V  E  F  *  G  H  G  S  I  T  Y  S  *  I  N  Q  K  :  E  I  K  S  K  *  K  T </first_frame>
            <second_frame>  F  P  C  V  S  R  G  L  C  T  P  M  T  K  G  K  K  L  K  E  F  A  Q  T  S  Y  :  V  T  *  S  L  E  Q  R  S  R  L  L  D  L  *  A  K  K  C  S  C  L  K  I  Q  M  P  P  L  *  C :   L  P  L  E  L  E  L  L  L  S  V  H  S  C  G  K  C  S  L  R  N  T  R  I  T  S :   S  T  V  Q  H  G  F  S  W  V  F  P  P  A  A  H  Y  F  T  R  R :   N  S  R  K  *  R  R  R  P  Q  K  T  S  D  W  T  L  L  *  A  E  S  K  R  T  K  R  V  K  R  C  T  F  K  P  E  W  L  N  M  L  K  N  Y  G  L  C  S  K  K  T  T  P  S  S  T  C  V  D  S  R  A  W  S  R  E  L  M  K  L  C  L  H  L  Q  K  E  M  :  V  L  S  G  R  T  T  R  S  N  *  R  R  Q  S  N  G  M  L  K  F  T  K  Y  F  Y  F  S  L  Y  K  Y  E  P  T  L  C  F  S  P  P  A  S  M  *  I  G  K  F  F  L  *  N  F  N  F  I  F  W  D  F  P  F  *  I  Y  V  Y  L  L  M  N  R  C  I  G  I  C  P  S  K  K  L  N  F  E  G  M  D  Q  *  H  I  A  E  S  T  K  K :   K  *  K  V  N  K  K   </second_frame>
            <third_frame>   F  P  V  C  Q  E  A  C  V  H  Q  *  Q  R  G  R  S  *  R  S  L  L  K  L  L  M :   *  L  E  A  W  S  R  G  Q  D  Y  W  T  C  R  Q  R  N  A  H  A  *  R  S  K  C  H  R  Y  N   : A  C  H  W  N  W  N  C  S  F  P  F  I  P  V  E  N  V  L  *  E  T  R  G  L  Q   : V  Q  R  Y  S  M  A  F  L  G  C  S  H  Q  Q  L  T  T  L  Q  G   : G  I  R  E  N  E  G  E  G  P  R  K  L  Q  I  G  L  C  C  E  Q  R  A  N  E  R  K  G  *  K  D  V  H  S  N  Q  N  G  S  I  C  *  R  T  M  D  F  A  P  K  R  Q  H  L  H  L  H  V  W  T  Q  G  H  G  A  G  N  *  *  N  Y  V  F  T  C  R  K  R  W :   Y  C  L  G  G  L  Q  E  A  I  E  E  G  R  A  M  E  C  *  S  L  L  N  I  F  T  F  L  C  T  N  M  S  Q  H  Y  A  S  L  P  L  H  P  C  R  *  V  N  F  S  F  E  I  L  I  S  F  F  G  T  S  L  F  K  S  M  C  I  F  *  *  I  G  V  L  A  F  V  P  L  K  S  *  I  L  R  A  W  I  N  N  I  *  L  N  Q  P  K   : R  N  K  K  *  I  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32594" stop="32516"/>
                    <exon start="32373" stop="32282"/>
                    <exon start="32183" stop="32106"/>
                    <exon start="31652" stop="31590"/>
                    <exon start="31469" stop="31235"/>
                    <exon start="31037" stop="30970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLCVKRLVYTNDKGEEVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHEDYKFNGTAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLQKDNTFIYMCGLKGMEQGIDEIMSSLAERDGIVWADYKKQLKKAEQWNVEVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="31142" e_stop="30605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31142" e_stop="30605" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31142" stop="30751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31031" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31030" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31014" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30946" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30890" stop="30605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAACTAATATAACCGACCCCAACTTGCTTGGGATTAAGGCATAGTTGTTGTTACTGTGGTATATATATCGATCCGAAGCTTACATTTGCTTCACTTTTGAAGGTATTGTCTGGGCGGACTACAAGAAGCAATTGAAGAAGGCAGAGCAATGGAATGTTGAAGTTTACTAAATATTTTTACTTTTCTTTGTACAAATATGAGCCAACATTATGCTTCTCTCCCCCTGCATCCATGTAGATAGGTAAATTTTTCCTTTGAAATTTTAATTTCATTTTTTGGGACTTCCCTTTTTAAATCTATGTGTATCTTTTAATGAATCGGTGTATTGGCATTTGTCCCTCTAAAAAGTTGAATTTTGAGGGCATGGATCAATAACATATAGCTGAATCAACCAAAAATCACAATATCTTGTTCTTTTTTTCATTTTCTCAACTACAATATCCTTTGTTGAGGTATGGGTCTATGTAGTTCTTTATGAATTTATAATTTATGTTTATTATATTAAGATATTTATTTTTACACGTAAAAGATACAC</gDNA_template>
            <first_frame> L  E  L  I  *  P  T  P  T  C  L  G  L  R  H  S  C  C  Y  C  G  I  Y  I  D  P  K  L  T  F  A  S  L  L  K  V  L  S  G  R  T  T  R  S  N  *  R  R  Q  S  N  G  M  L  K  F  T  K  Y  F  Y  F  S  L  Y  K  Y  E  P  T  L  C  F  S  P  P  A  S  M  *  I  G  K  F  F  L  *  N  F  N  F  I  F  W  D  F  P  F  *  I  Y  V  Y  L  L  M  N  R  C  I  G  I  C  P  S  K  K  L  N  F  E  G  M  D  Q  *  H  I  A  E  S  T  K  N  H  N  I  L  F  F  F  S  F  S  Q  L  Q  Y  P  L  L  R  Y  G  S  M  *  F  F  M  N  L  *  F  M  F  I  I  L  R  Y  L  F  L  H  V  K  D  T  </first_frame>
            <second_frame>  W  N  *  Y  N  R  P  Q  L  A  W  D  *  G  I  V  V  V  T  V  V  Y  I  S  I  R  S  L  H  L  L  H  F  *  R  Y  C  L  G  G  L  Q  E  A  I  E  E  G  R  A  M  E  C  *  S  L  L  N  I  F  T  F  L  C  T  N  M  S  Q  H  Y  A  S  L  P  L  H  P  C  R  *  V  N  F  S  F  E  I  L  I  S  F  F  G  T  S  L  F  K  S  M  C  I  F  *  *  I  G  V  L  A  F  V  P  L  K  S  *  I  L  R  A  W  I  N  N  I  *  L  N  Q  P  K  I  T  I  S  C  S  F  F  H  F  L  N  Y  N  I  L  C  *  G  M  G  L  C  S  S  L  *  I  Y  N  L  C  L  L  Y  *  D  I  Y  F  Y  T  *  K  I  H </second_frame>
            <third_frame>   G  T  N  I  T  D  P  N  L  L  G  I  K  A  *  L  L  L  L  W  Y  I  Y  R  S  E  A  Y  I  C  F  T  F  E  G  I  V  W  A  D  Y  K  K  Q  L  K  K  A  E  Q  W  N  V  E  V  Y  *  I  F  L  L  F  F  V  Q  I  *  A  N  I  M  L  L  S  P  C  I  H  V  D  R  *  I  F  P  L  K  F  *  F  H  F  L  G  L  P  F  L  N  L  C  V  S  F  N  E  S  V  Y  W  H  L  S  L  *  K  V  E  F  *  G  H  G  S  I  T  Y  S  *  I  N  Q  K  S  Q  Y  L  V  L  F  F  I  F  S  T  T  I  S  F  V  E  V  W  V  Y  V  V  L  Y  E  F  I  I  Y  V  Y  Y  I  K  I  F  I  F  T  R  K  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0056D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 111 chains have been computed
$ 
$ memory statistics:
$ 199152 bytes spliced alignments in total
$ 88 spliced alignments have been stored
$ 2263 bytes was the average size of a spliced alignment
$ 15688 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1961 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:27:10
-->
