<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:48:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739664" ref_strand="+" ref_description="SGN-E739664 [LC18BE04]">
      <seq>ggctcctctgctctttcctgttcttcaaattctatctctgctccagttggtctttgttgttctcaaagattaacacttccttttcgaaatcaaagaattgggtttctggaaaatccatcaagcttgaagattttccattttcaccgaaacactaccctccctttgctgaactgcactgctacggaagagatcgtggaggctagtgaaacagagggattatttgttgaaactgggtacatatatagtgttcatgggcttcaaggtgaggttcgagtaaaagcgacaactgatttccctgaattgcgattttcccagccaggaaggcgatggttgaggcagcaagttacagggagagatatgattcaagaaatcgaactagtggagggaagaggtcatccaggacagaagagttggatacttaaattccacgagattaacacaattgagcaggcccaaaaacttgtggggtcggccttactggtgaagaatgaagatagaccaatcctggaggaaggtgaattttacacccctgaccttgttgggatgaaagtatttctaaaggaaactagagaactggtaggaactgttattaatgttttcaacagtggagctagtgatctcctacatgttgagcttctaccgaatcaaaatgcaagaccacagttggaaggaagtgcatctggtcctcttgtatgggtccctttcgttgaagcaattgttccaaatattgatttgagtaaaagggaaatgctgattacacctccaaagggtcttttagaattgaacatccgtgcagatgagaggtccaagaaagagaggcgacagcttgaatggaaagagagaaaaaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="8582" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8882" g_stop="9059" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10854" g_stop="10990" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="315" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10991" i_stop="11081" i_length="91">
            <donor d_prob="0.017" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11082" g_stop="11216" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="450" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11630" g_stop="11740" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="561" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11741" i_stop="11850" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11851" g_stop="12117" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="828" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12118" i_stop="14143" i_length="2026">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14144" g_stop="14168" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="853" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E739664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8882" e_stop="9059"/>
          <exon e_start="10854" e_stop="10990"/>
          <exon e_start="11082" e_stop="11216"/>
          <exon e_start="11630" e_stop="11740"/>
          <exon e_start="11851" e_stop="12117"/>
          <exon e_start="14144" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTGGTAAATCTTCTTTCCATTAAAGTTTTAATCTTTATTGATTTTTGAGTTTCCATAATGCTTACTTTGATTTTTTCTGACTTTTTCCGAACTGGGTTGTGTTTATTTTGGTAGTATCAGAAATTACTCACTTCCAAGTATATACTGTTTTCAACTGAATTCTGAAATATGTTCTCAAGATGTTATGCTTTGCTTTTGTGGATTTTATGTTCCTTTGAATTATCATTAGTATTATGTTCTGACGAAGTGGTGTCCCTTGTCCAGCCAGCTTGGCAAGATCCTCTTGGTCTGGTTTAGAGATTGTATGTCGATATAAAAATAAGCCCGTGGCTGTGAGATTTAGAGAGTCTGAATTTTTCAGAGAACCCCTAATTTGTTTTAAAGAAAAATTATTGAGTATTGGAGTGAAATGGGTCCAAATATGGGGTGAATGGATGTTGAGGGTTAATATAGTGGACCAAAATTAGTTTAGGATTAACAAGTAGTAGTAGTAGACGACTAGTTTTTGCTGCTGAATAACACGTCAACATACCCAGTGTAGTCCGGGGGGGGGGTCTGGAGTGGGTAGAGTGTACGTAGGCCTTACCCCTACCTCACGGAGGCCTCTGCTGAATACATGCTGCTTAGTATAAAAGTATAGGTACATAGTATGGGATTTGAGACTTATCATTGGACATGTCCTTCTCAGTTCAGCTTATTTCTACATTCCTCGACTTCGTTTTGTTTCTTTTTGTAAGTTTGTTCTGTGGTTTGTCTATTTGTTGGTTCTAGTTTTGAAGCAGGAGCATCTTCAGATAATTCTATCAAGTTAATTGTACTTAAAGTTAGTCATTACTTCACAGTTAGGCAAATTAAGTTAATGTTGGCAACACATTATCAGATTAATGTAAGGTAGATTTATCTAATATCAATTTCTTGGGTCAGATCTTTTGCTTTTTTTAGTTTGCTATTTATGTCTTGCGTAGAAGTAAAGCGTCTTGGCAACTCATATTATGCGGCTTTGTCCCACAGTGACACTTCTGGCTTCATACTTAATCTTGTAGTTGCACTCTGACAATTGCTTTAGAATCCATACCGAAGATCGAAAGTGAGAGCATCATTATTTAAGGCAAAAGATGCAAAAGTACAGTAGGAGATGAATATTTGTTCTTTTGGTAGGTTGGATATACATGAACGGTAACTCAAGACACATTTATGTTTCTTGCCTATCCCAAACAAGGTACAGTGACCACGACCCATCAGAAGACACTAGGTTTAATAGAAGTTTTGGAATTGAGCAAAACCTTGAATTTTGTGCTGTTATTTGCTGTTCTATTGACATTTCACTTGAGCTGTTTCCTTCAATGACACACCGGCTAATCATTACTTTTATCTTCTGCAAGTATATGTTGTATATTTGAGCTATCTTAAGTATCACATCTTGTGATTGTTGTCATTCTACACCCTTAAGCTTAAGCAAGTGTGAGGTAATCTTTGAATTTGTAAATTCTTACAAATTCCAGTTAAAAGTTTCCCGAATCAAGTTAATCACATAACATAGAAAAATCATGTATGATGTTCTTCCTGGAAAGATATCATCTCATAATAATGTACGCTTTCTACAAATTTGTTACTCATCATGATATACCAAGTCATGTGAATTAGTTATCAGTTACAGAACGCAGTGCTTAGACTGTCAAGCATCTTAATTATGCTAGAGTATCACAGTAGTTTTCATTCACTAGAAAGTTTTCTTTATAGTTTCTGCAAAGTCACTTGGTCCTCAAGTTAAGCACCTTTATTGTTTGTTCATTTCAGCTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAGGTAGAAAGCATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAGGTGATCTCCGTGTAATTATGCTGTACATTGGGTTTCCACAACCCACACTATTGTTTTTCCTCATATATTATGGAATGCAGTAAATATGTCTTTTGATTATAATGACCTTATCTTTCCTGTGTTAAATTAATTTTAAATCATGCATGTACAATCACAGTATTTCAATACAGCAAAGTGGCAGTGTCATGTAAGAAAGTTGGAAGAATTTTATATGACTTTACTACCGAATCGAAAATATTTGGTTCATCTTTTGTAAATAAAGGCAAATTTCACTCTGCCCATTAAATACGGAACCATTACTACAATTCTAATGCCAGTTTTATGTATCACCTGAGACATATTTTGGAAATGGACTTGATCTTTATCTTAGGGCATGGCCGTTTGATATATCTTGTTTTCTCGATTCTCCTCAGGCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAGGTTTGTTTCCACGGCTTCTGACTTTCATAAAAGGCACACAGTTCTTTAGTTTAATTTCTATTGGAGCTGAGTGGCACTTAAAAGGGATCTTCTATTTTTATGTGCTCCAGGAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTTGTGAGTTGCTTTTCTTTTTTCTCCCATTTTGCCAGAATTTATCATATAGGTCACATGCTATTGCGGAGTGCTGTCAGTGTGGTTTCAGAAATCATAATTTCTTTTAAAAGAAATTTTATTTATCTTTGATTCTTTTCTAGAGAAGCAACACCTTGTGAGTTGATTTTGTTTGTGTTCACTTTTCTAGAATCAGAGTGCTGTCTCAATCATTTAAGAAGTCACTTTGCCATTTTCAAAGAAATTCTAGCTACTTTTTCTCAAGTACTCTGATTGGGTTTTTTCATATTCATTATTGGTTACAAGTTACTCTTGTGTGGTTTACTTTATAAATTTGACCAATCACAGACGTGCGTAAAGCAGTCAAGTTTAATTTTCTTCTTCTTGGCGCCTTCTCTAGTACTCCTTATGCTTCGTCTTGCTACACACCTCTTTCAGGGGTAGACCAGATACAATACCTTCAGTTTGGAAGTAATTAACCAAAAAATTATAGTTTTCCTTAGATTTTTGGTAAGGAATTATAGCTGCCCTCAAAACACATTTTGTTTCATCTCTTTCGGTATCTTCCTGGATTTTTGGCAGTATAGAAGCCTCCACTTTGTTCATCCCATTTGAATCTATTATCTTCACAGGGAAGTCCCTGAAAACTCCCATTTGTACTGTAAAATTCAGCAACTGTCACCAATTGCCAATCGTTGAAATGTCTTCTGAATCTGATGTTTCATATCTCATAGTCCCTGGATTCTGCTACAGTAGCTTCAGGGTACTGAATCAAGTTGAAAAAACAAAAGGAGTTGTATTTTTGGATGATTGTGGACTATCCATTTGTCATGACATAAGAGACTTTCCTTCCATTACTCCCGATGATGCTTGTTATTTGCAAAACTCAGACCACATCTTGCCAATAGGTGGTTTCTTATCTTAACCTATATGTGTTGTTTGCATCCTCTGCCAGGTGTAATCATTTCTAATCTTGCCCAACATCTTTTAAAGACAAATACATCTCAATGTTCACATTTCTATGACACTCATCCTATGAATAATTAGACCTTAGCAGCCTAACTTTTTTTTTTTTATCAAAGCCATGGAAACCCAACATTTACTCCAATATAACATTGCTGGCCTTACTGCCGTTAAATAATTTTTTTTAGGTACTTTGTAGTTGCACGGAAATCCACATCACTTATTCATTTCAGTCATCCTATATTTAATTTCTGTGTTATATCTTCATCTATCATGTCTTTTTTCTTTTAAGGCCAAGTTTAACGGGGTTTATCTTTATAGCTGCTTTACAGGTTTTTGGTCTGTTAGCTTCATGTTACTTTCATGTTTGAAGCAACTTTATTTTCTCTATAACCTTTGCTCCTTGATGCCTTTCTAATACAGTTTAGTCTTCACCAAAAAAAAAAATCTAAAAAGATTCTGCATTTAGGCACAACAATTACATCGAACCTCACTTTGCCTTCATTCTTACTATGGAGGCAAAACTTGCATATTAGTTCTACTTATCCTAAAACCCTTACTTAATGGAGTGTATTTCAATATTTTCAACTTTTTATTGATTCACTCCCTCATTTAATCAATTGACAATTATCTGCAAATAACAGTTCCCGTATAAAGTGAAGTTAGATGACTGTAGCCACTTGTTAGAAGATGGCGGTTGCGCCACCATATATTCACATCATTAATAGTTGTTAACTCCACAATGGTGAGATAAGAACAAGGTGAATTTGGTTTGTGCAGAAGGATAAATTCTTTAACATCTAAATAAATGGTTACCCACTTCTCCTCATAAGAATGTAGTGCAGTGATTATCATTAAATAGATGTCATAATTTTCTTATCCGAGCTCAATGACAAAGTAATTCTTGATGGAGAGTTCATACTTAGCTGTTCCAGATGAGTGCCGGTCATTAAGTAATGCCTCTAAAGTTGCTTTTCTCTCCGGTGCTCCTCTGTGATTGTCGTAGGTACTAAATCTATAGCATTGATCTAGTGTGTTTGGCCTACTTAACCTTCTTCTTTTTCAGGAATGGAAAGAGAGAAAAAAGTCTC</genome_strand>
        <mrna_strand>GGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAG...........................................................................................CCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAG..............................................................................................................GAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAAGAGAGAAAAAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365223" ref_strand="+" ref_description="SGN-E365223 [cLPT-16-A11]">
      <seq>ctctttcctgttcttcaaattctatctctgctccagttggtctttgctgttctcaaagattaacacttccttttcgaaatcaaagaattgggtttctggaaaatccatcaagcttgaagatattccattttcaccggaacactaccctccctttgctgaactgcactgctaccgaagagatcgtggaggctagtgagacagaaggattatttgttgaaactgggtagaaagcatcaggaacttaataatgggactggtttctcgtttttggcctgcatgagaatatccttttcatgaattcactcttaattcagccaggaaggcgatggttgaggcagcaagttacagggagagatataattcaagaaatcgaactagtggagggaagaggtcatccaggacagaagagttggatacttaaattccacgagattaacacaatagagcaggcccaaaaacttgtggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="8592" stop="11949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8892" g_stop="9059" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.880" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10854" g_stop="10908" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="223" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10909" i_stop="10990" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10991" g_stop="11216" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="449" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413">
            <donor d_prob="0.584" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11630" g_stop="11649" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="469" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E365223" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8892" e_stop="9059"/>
          <exon e_start="10854" e_stop="10908"/>
          <exon e_start="10991" e_stop="11216"/>
          <exon e_start="11630" e_stop="11649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTGGTAAATCTTCTTTCCATTAAAGTTTTAATCTTTATTGATTTTTGAGTTTCCATAATGCTTACTTTGATTTTTTCTGACTTTTTCCGAACTGGGTTGTGTTTATTTTGGTAGTATCAGAAATTACTCACTTCCAAGTATATACTGTTTTCAACTGAATTCTGAAATATGTTCTCAAGATGTTATGCTTTGCTTTTGTGGATTTTATGTTCCTTTGAATTATCATTAGTATTATGTTCTGACGAAGTGGTGTCCCTTGTCCAGCCAGCTTGGCAAGATCCTCTTGGTCTGGTTTAGAGATTGTATGTCGATATAAAAATAAGCCCGTGGCTGTGAGATTTAGAGAGTCTGAATTTTTCAGAGAACCCCTAATTTGTTTTAAAGAAAAATTATTGAGTATTGGAGTGAAATGGGTCCAAATATGGGGTGAATGGATGTTGAGGGTTAATATAGTGGACCAAAATTAGTTTAGGATTAACAAGTAGTAGTAGTAGACGACTAGTTTTTGCTGCTGAATAACACGTCAACATACCCAGTGTAGTCCGGGGGGGGGGTCTGGAGTGGGTAGAGTGTACGTAGGCCTTACCCCTACCTCACGGAGGCCTCTGCTGAATACATGCTGCTTAGTATAAAAGTATAGGTACATAGTATGGGATTTGAGACTTATCATTGGACATGTCCTTCTCAGTTCAGCTTATTTCTACATTCCTCGACTTCGTTTTGTTTCTTTTTGTAAGTTTGTTCTGTGGTTTGTCTATTTGTTGGTTCTAGTTTTGAAGCAGGAGCATCTTCAGATAATTCTATCAAGTTAATTGTACTTAAAGTTAGTCATTACTTCACAGTTAGGCAAATTAAGTTAATGTTGGCAACACATTATCAGATTAATGTAAGGTAGATTTATCTAATATCAATTTCTTGGGTCAGATCTTTTGCTTTTTTTAGTTTGCTATTTATGTCTTGCGTAGAAGTAAAGCGTCTTGGCAACTCATATTATGCGGCTTTGTCCCACAGTGACACTTCTGGCTTCATACTTAATCTTGTAGTTGCACTCTGACAATTGCTTTAGAATCCATACCGAAGATCGAAAGTGAGAGCATCATTATTTAAGGCAAAAGATGCAAAAGTACAGTAGGAGATGAATATTTGTTCTTTTGGTAGGTTGGATATACATGAACGGTAACTCAAGACACATTTATGTTTCTTGCCTATCCCAAACAAGGTACAGTGACCACGACCCATCAGAAGACACTAGGTTTAATAGAAGTTTTGGAATTGAGCAAAACCTTGAATTTTGTGCTGTTATTTGCTGTTCTATTGACATTTCACTTGAGCTGTTTCCTTCAATGACACACCGGCTAATCATTACTTTTATCTTCTGCAAGTATATGTTGTATATTTGAGCTATCTTAAGTATCACATCTTGTGATTGTTGTCATTCTACACCCTTAAGCTTAAGCAAGTGTGAGGTAATCTTTGAATTTGTAAATTCTTACAAATTCCAGTTAAAAGTTTCCCGAATCAAGTTAATCACATAACATAGAAAAATCATGTATGATGTTCTTCCTGGAAAGATATCATCTCATAATAATGTACGCTTTCTACAAATTTGTTACTCATCATGATATACCAAGTCATGTGAATTAGTTATCAGTTACAGAACGCAGTGCTTAGACTGTCAAGCATCTTAATTATGCTAGAGTATCACAGTAGTTTTCATTCACTAGAAAGTTTTCTTTATAGTTTCTGCAAAGTCACTTGGTCCTCAAGTTAAGCACCTTTATTGTTTGTTCATTTCAGCTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAGGTAGAAAGCATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAGGTGATCTCCGTGTAATTATGCTGTACATTGGGTTTCCACAACCCACACTATTGTTTTTCCTCATATATTATGGAATGCAGTAAATATGTCTTTTGATTATAATGACCTTATCTTTCCTGTGTTAAATTAATTTTAAATCATGCATGTACAATCACAGTATTTCAATACAGCAAAGTGGCAGTGTCATGTAAGAAAGTTGGAAGAATTTTATATGACTTTACTACCGAATCGAAAATATTTGGTTCATCTTTTGTAAATAAAGGCAAATTTCACTCTGCCCATTAAATACGGAACCATTACTACAATTCTAATGCCAGTTTTATGTATCACCTGAGACATATTTTGGAAATGGACTTGATCTTTATCTTAGGGCATGGCCGTTTGATATATCTTGTTTTCTCGATTCTCCTCAGGCCCAAAAACTTGTGGGGTC</genome_strand>
        <mrna_strand>CTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGCTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATATTCCATTTTCACCGGAACACTACCCTCCCTTTGCTGAACTGCACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGAAGAGATCGTGGAGGCTAGTGAGACAGAAGGATTATTTGTTGAAACTGG..................................................................................GTAGAAAGCATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTGCATGAGAATATCCTTTTCATGAATTCACTCTTAATTCAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATAATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAAACTTGTGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340156" ref_strand="+" ref_description="SGN-E340156 [cTOF-2-K5]">
      <seq>tctgaaaaaaccctaattcacagtgaagtaaagttacaatggcgattcctctactgaaaaagaaagttatcaagaaaagggtgaagcaattcaagaggcatcagagtgataggagaatcactgttaagtcatgtgtgcgaggtttactaagtggaaataattttcatttatcggacaactgacaaactggcgcagaccaaagggtattgactccagagttggaaggaagttcaagggatgtgtcttaatgcccaatattggctatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaatttgtttgcttattccatccttgcttcgcttcgtgacatcaccattagcttattcacaggacttactgtgctgagattgcacataatgtatccacaaggaaaaggaaagaaatagttgagagagtgtcccagcttgatgtcgtagtaactaacaagcttgctaggtcgcgtagccaggaggatgaatgagctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="22643" stop="26762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22943" g_stop="22964" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22965" i_stop="23041" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23042" g_stop="23147" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="128" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23148" i_stop="26012" i_length="2865">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26013" g_stop="26462" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="578" r_length="450" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E340156" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22943" e_stop="22964"/>
          <exon e_start="23042" e_stop="23147"/>
          <exon e_start="26013" e_stop="26462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAAACCCTAATTCACAGTGAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACACATCATATCTGATTCTTCTTGAACAAATAATTTGGAACTTTTTTTTGTTTGGTTTTAGCGTTTTCCTTTTGATGTTAAATTTTATTTGTGGACAATGTGCTTATAAGATGTGAGGATGCTTATCCACGTATTCTGTAGAGTTCAATGATGAATTCAAAACATGCACTACCATCTGATCTTATAGCATTTGTCATCCTTTTAAGGTCTTGGGTTTGTACCTTCTTTTTTTTGTGGTTTTGTTCAGTTTCTTGAACATTAGGATTCAAATTTGTTTCTTTGCTTACTATTAGTATTATCTATACTATTTTTGTTTGTTAAAAATGGAAAAATGATGATAGTTCATGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTTGCAAGGTGGTGATTGACTCATTATATCTGATTCTTTCTAAACAGTAATGTTTGTTTTATACTTGTTTGGTTTTGGTTTTATTTTGTTTTTTGATGCTAAGCTTGTTTATGGCGACATGCTATATGGTGTGATGATGTGTATCCACCTTTTCTGTAGGGTTCAATGATGAATTCAAATACATGCACTACCATCTGATCTTATGGCATATTTCGCCTACTTAAATCTGTATTGTGGTTTGTTTTATAAGTTCTGCAGTGTTAATTCACTGATGCAGTCAATGATGATTTTTTCCCAAATTGCTGAATGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGATTGCATCTAGAACAATTTTATGCAGTATTCTCCATTTGTTTTTAATCACTTCCTCCAGTTTTCTATCAAATTATTTGTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAATTATACTCTAGTGCAGGTCTTGCGACACAGTTGCTTCATTATCACAATAAGCTTTCTGTTACTTTAACCCTGCTTACATTCTATTATTTATAAACATCATATTCTTGGTTTTAGCTTCGATTTTACTATATTTTTCGGAAATAGTGGAAACCATTATGTTTTTTTGTGTTACACATTAATATTAGATGAGAGTTATTGTCGCCCCAGTCTTAAGTTGCGTCCAATTTATTGGATATGCAAGGTGGTGATTGACACAGAATATCTGATTCTTCCTAAACAATAATGTTGATATTGTGCAAATTTTCAGACTTATCTATTCTCTTTATGTTAAATCTTGTTTGTTGACGATATGCTCATAAGATATGAGGATGCTTATCCACCTATTCTGTAGAGTTCAATGATGAATTCAGAACATGCACTACCATCTGATCTTATAGCATATCTTATTTGGTTTTTACAGGTTTTGGGTTCCCCACTTTTCTGTATTGTGATTTGGTTTAAAAGTGTTGAAGTTTTTAATCATTGATGCAGTCAATGATGATTTTTTCCCAAATTACTGATTTGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGGTTGCATCAAGAACAAATTTGTTAATTATTCTCAATTATTCTCCTCTGGTGTTCAATCACTTCCTTCAGTTTGTTTACCTTCACATTCTTCTTCTTTTGTTTTTAATCACTTCAGTTTACTTTCACGTTATTTTTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCT</genome_strand>
        <mrna_strand>TCTGAAAAAACCCTAATTCACA.............................................................................GTGAAGTAAAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGTGCGAGGTTTACTAAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTCGCGTAGCCAGGAGGATGAATGAGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542446" ref_strand="+" ref_description="SGN-E542446 [TUS-63-M3]">
      <seq>tgagccccttttcctttgtttgttcttttcaatgtttaatttctgtacacaatgtttgttcttttgtaatcgaaggtgaagtagagttacaatggcgattcctctactgaaaaagaaagttatcaagaaaagggtgaagcaattcaagaggcatcagagtgataggagaatcactgttaaggtattgttttttatttcttgaaacccctcttttgcattaagctctattgggtaatagtgaaaaaagctcgtctctttatgggttgacaaaaaaattggattttgttgggttttttgtgttcgagagggaaaatgatgagagttattgtcgccccagtcttaatttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttagtgtttagtcactgatgatttttttcataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="22666" stop="25926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22966" g_stop="23338" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23339" i_stop="25328" i_length="1990">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25329" g_stop="25626" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="668" r_length="297" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E542446" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22966" e_stop="23338"/>
          <exon e_start="25329" e_stop="25626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACACATCATATCTGATTCTTCTTGAACAAATAATTTGGAACTTTTTTTTGTTTGGTTTTAGCGTTTTCCTTTTGATGTTAAATTTTATTTGTGGACAATGTGCTTATAAGATGTGAGGATGCTTATCCACGTATTCTGTAGAGTTCAATGATGAATTCAAAACATGCACTACCATCTGATCTTATAGCATTTGTCATCCTTTTAAGGTCTTGGGTTTGTACCTTCTTTTTTTTGTGGTTTTGTTCAGTTTCTTGAACATTAGGATTCAAATTTGTTTCTTTGCTTACTATTAGTATTATCTATACTATTTTTGTTTGTTAAAAATGGAAAAATGATGATAGTTCATGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTTGCAAGGTGGTGATTGACTCATTATATCTGATTCTTTCTAAACAGTAATGTTTGTTTTATACTTGTTTGGTTTTGGTTTTATTTTGTTTTTTGATGCTAAGCTTGTTTATGGCGACATGCTATATGGTGTGATGATGTGTATCCACCTTTTCTGTAGGGTTCAATGATGAATTCAAATACATGCACTACCATCTGATCTTATGGCATATTTCGCCTACTTAAATCTGTATTGTGGTTTGTTTTATAAGTTCTGCAGTGTTAATTCACTGATGCAGTCAATGATGATTTTTTCCCAAATTGCTGAATGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGATTGCATCTAGAACAATTTTATGCAGTATTCTCCATTTGTTTTTAATCACTTCCTCCAGTTTTCTATCAAATTATTTGTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAATTATACTCTAGTGCAGGTCTTGCGACACAGTTGCTTCATTATCACAATAAGCTTTCTGTTACTTTAACCCTGCTTACATTCTATTATTTATAAACATCATATTCTTGGTTTTAGCTTCGATTTTACTATATTTTTCGGAAATAGTGGAAACCATTATGTTTTTTTGTGTTACACATTAATATTAGATGAGAGTTATTGTCGCCCCAGTCTTAAGTTGCGTCCAATTTATTGGATATGCAAGGTGGTGATTGACACAGAATATCTGATTCTTCCTAAACAATAATGTTGATATTGTGCAAATTTTCAGACTTATCTATTCTCTTTATGTTAAATCTTGTTTGTTGACGATATGCTCATAAGATATGAGGATGCTTATCCACCTATTCTGTAGAGTTCAATGATGAATTCAGAACATGCACTACCATCTGATCTTATAGCATATCTTATTTGGTTTTTACAGGTTTTGGGTTCCCCACTTTTCTGTATTGTGATTTGGTTTAAAAGTGTTGAAGTTTTTAATCATTGATGCAGTCAATGATGATTTTTTCCCAAATTACTGATTTGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGGTTGCATCAAGAACAAATTTGTTAATTATTCTCAATTATTCTCCTCTGGTGTTCAATCACTTCCTTCAGTTTGTTTACCTTCACATTCTTCTTCTTTTGTTTTTAATCACTTCAGTTTACTTTCACGTTATTTTTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATT</genome_strand>
        <mrna_strand>TGAGCCCC-TTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTG-TTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTT-AGTGTTTAGTCACTGATGATTTTTTTCATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302202" ref_strand="+" ref_description="SGN-E302202 [cLEW-19-K11]">
      <seq>gagccccttttcctttgtttgttcttttcaatgtttaatttctgtacacaatgtttgttcttttgtaatcgaaggtgaagtagagttacaatggcgattcctctactgaaaaagaaagttatcaagaaaagggtgaagcaattcaagaggcatcagagtgataggagaatcactgttaaggtattgttttttatttcttgaaacccctcttttgcattaagctctattgggtaatagtgaaaaaagctcgtctctttatgggttgacaaaaaaattggattttgttgggttttttgtgttcgagagggaaaatgatgagagttattgtcgccccagtcttaatttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="22667" stop="25801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22967" g_stop="23338" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23339" i_stop="25328" i_length="1990">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25329" g_stop="25501" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="543" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E302202" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22967" e_stop="23338"/>
          <exon e_start="25329" e_stop="25501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACACATCATATCTGATTCTTCTTGAACAAATAATTTGGAACTTTTTTTTGTTTGGTTTTAGCGTTTTCCTTTTGATGTTAAATTTTATTTGTGGACAATGTGCTTATAAGATGTGAGGATGCTTATCCACGTATTCTGTAGAGTTCAATGATGAATTCAAAACATGCACTACCATCTGATCTTATAGCATTTGTCATCCTTTTAAGGTCTTGGGTTTGTACCTTCTTTTTTTTGTGGTTTTGTTCAGTTTCTTGAACATTAGGATTCAAATTTGTTTCTTTGCTTACTATTAGTATTATCTATACTATTTTTGTTTGTTAAAAATGGAAAAATGATGATAGTTCATGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTTGCAAGGTGGTGATTGACTCATTATATCTGATTCTTTCTAAACAGTAATGTTTGTTTTATACTTGTTTGGTTTTGGTTTTATTTTGTTTTTTGATGCTAAGCTTGTTTATGGCGACATGCTATATGGTGTGATGATGTGTATCCACCTTTTCTGTAGGGTTCAATGATGAATTCAAATACATGCACTACCATCTGATCTTATGGCATATTTCGCCTACTTAAATCTGTATTGTGGTTTGTTTTATAAGTTCTGCAGTGTTAATTCACTGATGCAGTCAATGATGATTTTTTCCCAAATTGCTGAATGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGATTGCATCTAGAACAATTTTATGCAGTATTCTCCATTTGTTTTTAATCACTTCCTCCAGTTTTCTATCAAATTATTTGTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAATTATACTCTAGTGCAGGTCTTGCGACACAGTTGCTTCATTATCACAATAAGCTTTCTGTTACTTTAACCCTGCTTACATTCTATTATTTATAAACATCATATTCTTGGTTTTAGCTTCGATTTTACTATATTTTTCGGAAATAGTGGAAACCATTATGTTTTTTTGTGTTACACATTAATATTAGATGAGAGTTATTGTCGCCCCAGTCTTAAGTTGCGTCCAATTTATTGGATATGCAAGGTGGTGATTGACACAGAATATCTGATTCTTCCTAAACAATAATGTTGATATTGTGCAAATTTTCAGACTTATCTATTCTCTTTATGTTAAATCTTGTTTGTTGACGATATGCTCATAAGATATGAGGATGCTTATCCACCTATTCTGTAGAGTTCAATGATGAATTCAGAACATGCACTACCATCTGATCTTATAGCATATCTTATTTGGTTTTTACAGGTTTTGGGTTCCCCACTTTTCTGTATTGTGATTTGGTTTAAAAGTGTTGAAGTTTTTAATCATTGATGCAGTCAATGATGATTTTTTCCCAAATTACTGATTTGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGGTTGCATCAAGAACAAATTTGTTAATTATTCTCAATTATTCTCCTCTGGTGTTCAATCACTTCCTTCAGTTTGTTTACCTTCACATTCTTCTTCTTTTGTTTTTAATCACTTCAGTTTACTTTCACGTTATTTTTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATG</genome_strand>
        <mrna_strand>GAGCCCC-TTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTG-TTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319773" ref_strand="+" ref_description="SGN-E319773 [cTOB-12-O22]">
      <seq>tccagactttactctgttgctgggtgtttcgtttttacgggcagaaactaactttaaagcaggtcttgcgacacagttgcttctctgtaaataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttatcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24679" stop="25836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24979" g_stop="25536" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E319773" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24979" e_stop="25536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATT</genome_strand>
        <mrna_strand>TCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTATCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347453" ref_strand="+" ref_description="SGN-E347453 [cTOF-33-H13]">
      <seq>tttaaagcaggtcttgcgacacagttgcttctctgtaaataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttatcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24731" stop="25952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25031" g_stop="25652" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E347453" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25031" e_stop="25652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAG</genome_strand>
        <mrna_strand>TTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTATCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698402" ref_strand="+" ref_description="SGN-E698402 [FA06AG10]">
      <seq>ccctttacagttgcttctctgtaaataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttttcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgtgatgatgcgtatccacctattctcgagggttcgacgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccaattttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaagaatatcaccatatttctgctgggattgcatctaaaacatgctttgtgcaccactattctttcatttctgtttaaaatcttgttgcctatggaatatcttatgcccagactactttgttgctgggtgtttcccttttatgggcacaaaattaaaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24751" stop="26108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25045" g_stop="25810" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E698402" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25045" e_stop="25810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTT-CGTTTTATGGGCAGAAATTAAACAAAAGA</genome_strand>
        <mrna_strand>CCCTTTACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAAACATGCTTTGTGCACCACTATTCTTTCATTTCTGTTTAAAATCTTGTTGCCTATGGAATATCTTATGCCCAGACTACTTTGTTGCTGGGTGTTTCCCTTTTATGGGCACAAAATTAAAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303010" ref_strand="+" ref_description="SGN-E303010 [cLEW-26-E4]">
      <seq>acagttgcttcttctgtaaataagcctttctgttacctttaaccctgcttaccatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttatcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgccttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24751" stop="25931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25051" g_stop="25631" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E303010" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25051" e_stop="25631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTGCTTC-TCTGTAAATAAG-CTTTCTGTTA-CTTTAACCCTGCTTA-CATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTG-CTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGA</genome_strand>
        <mrna_strand>ACAGTTGCTTCTTCTGTAAATAAGCCTTTCTGTTACCTTTAACCCTGCTTACCATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTATCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346103" ref_strand="+" ref_description="SGN-E346103 [cTOF-34-E3]">
      <seq>gcttctctgtaaataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgccatgctaatatatattatttatcatcagcatctagtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttatgtgttggaaatggaaagtgatgacagtgattgtcgccccaatcttaagttgcatacaatttattgtattctcaaggtggtgattgactcattgattctgatccttactaaacaataatattaaattgtatatttgggcggatgtagctttcttgtttgatgctaagcttggttattgagttgtgaaaacaacgtgcgatgatgcgtatccacctattctcgacggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttctggtttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24757" stop="25856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25057" g_stop="25556" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E346103" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25057" e_stop="25556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCC</genome_strand>
        <mrna_strand>GCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCCATGCTAATATATATTATTTATCATCAGCATCTAGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTATGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAATCTTAAGTTGCATACAATTTATTGTATTCTCAAGGTGGTGATTGACTCATTGATTCTGATCCTTACTAAACAATAATATTAAATTGTATATTTGGGCGGATGTAGCTTTCTTGTTTGATGCTAAGCTTGGTTATTGAGTTGTGAAAACAACGTGCGATGATGCGTATCCACCTATTCTCGACGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTCTGGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306300" ref_strand="+" ref_description="SGN-E306300 [cLEX-13-A4]">
      <seq>aataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttatcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24768" stop="25806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25068" g_stop="25506" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E306300" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25068" e_stop="25506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTA</genome_strand>
        <mrna_strand>AATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTATCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304144" ref_strand="+" ref_description="SGN-E304144 [cLEX-6-C13]">
      <seq>tgattgtcgccccagtcttaagctgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaagaatatcaccatatttctgctgggattgcatctaagacatgctttgtgcagtactattcttcaatttttgtttaaaatcttgttgcctatggtatatcttatgtccagactactttgttgctgggtgtttcgttttatgggcagaaattaaacaaaagaacagatcttgcgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24980" stop="26126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25280" g_stop="25826" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E304144" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25280" e_stop="25826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACAC</genome_strand>
        <mrna_strand>TGATTGTCGCCCCAGTCTTAAGCTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203103" ref_strand="+" ref_description="SGN-E203103 [cLEB-3-J19]">
      <seq>gcacgaggtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24985" stop="25926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25280" g_stop="25626" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="349" r_length="346" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E203103" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25280" e_stop="25626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATT</genome_strand>
        <mrna_strand>CGA-GGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305132" ref_strand="+" ref_description="SGN-E305132 [cLEY-18-N10]">
      <seq>ttgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaagaatatcaccatatttctgctgggattgcatctaagacatgctttgtgcagtactattcttcaatttttgtttaaaatcttgttgcctatggtatatcttatgtccagactactttgttgctgggtgtttcgttttatgggcagaaattaaacaaaagaacagatcttgcgacacagttggcttcagtatcaataagctntctgttactgttaaccctgcttacatccctcctatctttcaaccttttctatgtatatttagtagtgttcaacacttcactcgattatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25036" stop="26243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25336" g_stop="25943" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E305132" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25336" e_stop="25943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAG</genome_strand>
        <mrna_strand>TTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTNTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244443" ref_strand="+" ref_description="SGN-E244443 [cLEF-3-G22]">
      <seq>ttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaagaatatcaccatatttctgctgggattgcatctaagacatgctttgtgcagtactattcttcaatttttgtttaaaatcttgttgcctatggtatatcttatgtccagactactttgttgctgggtgtttcgttttatgggcagaaattaaacaaaagaacagatcttgcgacacagttggcttcagtatcaataagctttctgttactgttaaccctgcttacatccctcctatctttcaaccttttctatgtatatttagtagtgttcaacacttcactcgattatatagacatttttgtttgatgtttctctcaacccttgtgaagaatgtgatttgtttcacttgccttggcccaagtcatgtgtgcgaggtttactaagtggaaataattttcatttatcggacaactgacaaactggcgcagaccaaagggtattgactccagagttggaaggaagttcaagggatgtgtcttaatgcccaatattggctatggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25260" stop="26455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25560" g_stop="26155" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E244443" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25560" e_stop="26155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCT</genome_strand>
        <mrna_strand>TTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTAAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316716" ref_strand="+" ref_description="SGN-E316716 [cTOB-5-L22]">
      <seq>tccagactactttgttgctgggtgtttcgttttatgggcagaaattaaacaaaagaacagatcttgcgacacagttggcttcagtatcaataagctttctgttactgttaaccctgcttacatccctcctatctttcaaccttttctatgtatatttagtagtgttcaacacttcactcgattatatagacatttttgtttgatgtttctctcaacccttgtgaagaatgtgatttgtttcacttgccttggcccaagtcatgtgtgcgaggtttactaagtggaaataattttcatttatcggacaactgacaaactggcgcagaccaaagggtattgactccagagttggaaggaagttcaagggatgtgtcttaatgcccaatattggctatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25455" stop="26567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25755" g_stop="26267" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E316716" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25755" e_stop="26267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAAT</genome_strand>
        <mrna_strand>TCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTAAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342661" ref_strand="+" ref_description="SGN-E342661 [cTOF-7-L23]">
      <seq>aaagaacagatcttgcgacacagttggcttcagtatcaataagctttctgttactgttaaccctgcttacatccctcctatctttcaaccttttctatgtatatttagtagtgttcaacacttcactcgattatatagacatttttgtttgatgtttctctcaacccttgtgaagaatgtgatttgtttcacttgccttggcccaagtcatgtgtgcgaggtttactaagtggaaataattttcatttatcggacaactgacaaactggcgcagaccaaagggtattgactccagagttggaaggaagttcaagggatgtgtcttaatgcccaatattggctatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaatttgtttgcttattccatccttgcttcgcttcgtgacatcaccattagcttattcacaggacttactgtgctgagattgcacataatgtatccacaaggaaaaggaaagaaatagttgagagagtgtcccagcttgatgntcgtagtaactaacaagcttgcntagntcgcgtagccaggaggatgaatgagctttcttggttttaagggttgtcnacagagttcatccataatcaactggcaaatgtgtagcaatgtaattcttgatgtacaattggtatagtaaatgaatataattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25506" stop="26863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25806" g_stop="26563" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E342661" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25806" e_stop="26563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATG-TCGTAGTAACTAACAAGCTTGC-TAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTC</genome_strand>
        <mrna_strand>AAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTAAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGNTCGTAGTAACTAACAAGCTTGCNTAGNTCGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTTTAAGGGTTGTCNACAGAGTTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203104" ref_strand="+" ref_description="SGN-E203104 [cLEB-3-J19](-)">
      <seq>gttcaagggatgtgtcttaatgcccaatattggctatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaatttgtttgcttattccatccttgcttcgcttcgtgacatcaccattagcttattcacaggacttactgtgctgagattgcacataatgtatccacaaggaaaaggaaagaaatagttgagagagtgtcccagcttgatgtcgtagtaactaacaagcttgctaggtcgcgtagccaggaggatgaatgagctttcttggttttaagggttgtcaacagagttcatccataatcaactggcaaatgtgtagcaatgtaattcttgatgtacaattggtatagtaaatgaatataattctcttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25813" stop="94999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26113" g_stop="26585" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E203104" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26113" e_stop="26585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACT</genome_strand>
        <mrna_strand>GTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTCGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTTTAAGGGTTGTCAACAGAGTTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304006" ref_strand="+" ref_description="SGN-E304006 [cLEX-6-C13](-)">
      <seq>tatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaatttgtttgcttattccatccttgcttcgcttcgtgacatcaccattagcttattcacaggacttactgtgctgagattgcacataatgtatccacaaggaaaaggaaagaaatagttgagagagtgtcccagcttgatgtcgtagtaactaacaagcttgctaggtcgcgtagccaggaggatgaatgagctttcttggttttaagggttgtcaacagagttcatccataatcaactggcaaatgtgtagcaatgtaattcttgatgtacaattggtatagtaaatgaatataattctcttcacttgcttgtaagaacttctaaatgagaacattatgacgacgctaaaaaatactccacaataccatgagaatgatcattatgaataaacgattgaaaattcttaattattcctcctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="25847" stop="26986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26147" g_stop="26693" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E304006" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26147" e_stop="26693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCAAATTTTTTA</genome_strand>
        <mrna_strand>TATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTCGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTTTAAGGGTTGTCAACAGAGTTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310030" ref_strand="+" ref_description="SGN-E310030 [cLEZ-8-C19]">
      <seq>acataatcttcttagcctttacaacacaaaaaaagaaaaaaacttattcagttttcatcaaaaagaggtttcaagccttactatcattatcattttcaagaaccaagaatggctagtgagcagatgaaacctgttgcatctttgcttttggtccttaatttctgcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttcccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaactacaggaattccaaattgaaaacaatggaggcattcatgataattctatcatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="31930" stop="33501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32230" g_stop="32464" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="455" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33082" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="501" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33162" g_stop="33201" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="541" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E310030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32230" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33082"/>
          <exon e_start="33162" e_stop="33201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTGGTATAGCACCCTTCATCTGTATACAAATATGCAAATTTCAAAGAACTATTGACATTAACTCCTGCACAATTTTTTGCAGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTC</genome_strand>
        <mrna_strand>ACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG...............................................................................AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747359" ref_strand="+" ref_description="SGN-E747359 [GI|47104603]">
      <seq>cataatcttcttagcctttacaacacaaaaaaagaaaaaaacttattcagttttcatcaaaaagaggtttcaagccttactatcattatcattttcaagaaccaagaatggctagtgagcagatgaaacctgttgcatctttgcttttggtccttaatttctgcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttcccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaactacaggaattccaaattgaaaacaatggaggcattcatgataattctatcatttactcaactggtatacatagctgccattcatggtgcttcatcaaggagataaatgagcttcgaagataaatcgtatcgtgtgaaatttattgattgagactgttgtttccttttctttttttgttttaacaattgtgtcattgtatttattcattattgtgtacacaaagttggccagatggctgtttgtatatcaactatcttcagtattcatattgtaagaaacaaataagtgatgtacccttcattggctttttcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="31931" stop="109318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32231" g_stop="32464" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="454" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33082" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33162" g_stop="33473" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="812" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E747359" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32231" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33082"/>
          <exon e_start="33162" e_stop="33473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTGGTATAGCACCCTTCATCTGTATACAAATATGCAAATTTCAAAGAACTATTGACATTAACTCCTGCACAATTTTTTGCAGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCCAGAAGAAAATTGGACAT</genome_strand>
        <mrna_strand>CATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG...............................................................................AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543980" ref_strand="+" ref_description="SGN-E543980 [TUS-66-B6]">
      <seq>cataatcttcttagcctttacaacacaaaaaaagaaaaaaacttattcagttttcatcaaaaagaggtttcaagccttactatcattatcattttcaagaaccaagaatggctagtgagcagatgaaacctgttgcatctttgcttttggtccttaatttctgcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttcccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaactacaggaattccaaattgaaaacaatggaggcattcatgataattctatcatttactcaactggtatacatagctgccattcatggtgcttcatcaaggagataaatgagcttcgaagataaatcgtatcgtgtgaaatttattgattgagactgttgtttccttttctttttttgttttaacaattgtgtcattgtatttattcattattgtggacacaaagttggccagatggctgtttgtatatcaactatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="31931" stop="33702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32231" g_stop="32464" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="454" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33082" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33162" g_stop="33402" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="741" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E543980" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32231" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33082"/>
          <exon e_start="33162" e_stop="33402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTGGTATAGCACCCTTCATCTGTATACAAATATGCAAATTTCAAAGAACTATTGACATTAACTCCTGCACAATTTTTTGCAGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA</genome_strand>
        <mrna_strand>CATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG...............................................................................AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGGACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305270" ref_strand="+" ref_description="SGN-E305270 [cLEX-15-K4]">
      <seq>ataatcttcttagcctttacaacacaaaaaaagaaaaaaacttattcagttttcatcaaaaagaggtttcaagccttactatcattatcattttcaagaaccaagaatggctagtgagcagatgaaacctgttgcatctttgcttttggtccttaatttctgcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttgccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="31932" stop="33366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32232" g_stop="32464" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="453" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33066" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="483" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E305270" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32232" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTA</genome_strand>
        <mrna_strand>ATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTGCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543979" ref_strand="+" ref_description="SGN-E543979 [TUS-66-B6](-)">
      <seq>ttttcaagacccaagaatggctagtgagcagatgaaccctgttgcatcttgccttttggtccttaatttcggcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttcccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaactacaggaattccaaattgaaaacaatggaggcattcatgataattctatcatttactcaactggtatacatagctgccattcatggtgcttcatcaaggagataaatgagcttcgaagataaatcgtatcgtgtgaaatttattgattgagactgttgtttccttttctttttttgttttaacaattgtgtcattgtatttattcattattgtgtacacaaagttggccagatggctgtttgtatatcaactatcttcagtattcatattgtaagaaacaaataagtgatgtacccttcattggctttttcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="32022" stop="33765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32322" g_stop="32464" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="363" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33082" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="409" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33162" g_stop="33466" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="714" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E543979" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32322" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33082"/>
          <exon e_start="33162" e_stop="33466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTGGTATAGCACCCTTCATCTGTATACAAATATGCAAATTTCAAAGAACTATTGACATTAACTCCTGCACAATTTTTTGCAGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCCAGAAGAAAAT</genome_strand>
        <mrna_strand>TTTTCAAGACCCAAGAATGGCTAGTGAGCAGATGAACCCTGTTGCATCTTGCCTTTTGGTCCTTAATTTCGGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG...............................................................................AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350685" ref_strand="+" ref_description="SGN-E350685 [cTOS-7-E6]">
      <seq>taaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcatatagttatatcctttgggttcagacataagcttcaaagctttgttattaatagtcactccttttacttctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37411" stop="33533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37111" g_stop="37045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="163" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33828" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="572" r_length="409" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E350685" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37111" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAAGTTTG</genome_strand>
        <mrna_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351303" ref_strand="+" ref_description="SGN-E351303 [cTOS-6-J14]">
      <seq>taaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcatatagttatatcctttgggttcagacataagcttcaaagctttgttattaatagtcactccttttacttctcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37411" stop="33533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37111" g_stop="37045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="163" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33833" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="567" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="578"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E351303" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37111" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAA</genome_strand>
        <mrna_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351699" ref_strand="+" ref_description="SGN-E351699 [cTOS-8-K12]">
      <seq>taaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcagatagatgaatcgagaataagagcatgaagctgggtgaatggagtaccaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggatagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgatatttatccaaaatttcaccagcatatagttatatcctttgggttcagacattagcttcagagctttgttattaatagtcactccttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37411" stop="33544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37111" g_stop="37045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="163" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33844" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="556" r_length="393" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E351699" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37111" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTT</genome_strand>
        <mrna_strand>TAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAGATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGGTGAATGGAGTACCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGATAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGATATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATTAGCTTCAGAGCTTTGTTATTAATAGTCACTCCTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555326" ref_strand="+" ref_description="SGN-E555326 [cTSC-1-K19]">
      <seq>ggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgttaccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcacctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcatatagttatatcctttgggttcagacataagcttcaaagctttgttattaatagtcactcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37627" stop="33548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37327" g_stop="37045" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="379" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33848" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="768" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E555326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37327" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTT</genome_strand>
        <mrna_strand>GGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216869" ref_strand="+" ref_description="SGN-E216869 [cLEL-1-P7](-)">
      <seq>cctgaaaagttgctgtggcttgtatagttgtttcaggatcaaataatgaatcgagaataagagcatgaagctggttaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcacatagttatatcctttgggtcccgacataagcttcaaagctttgttattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37192" stop="33560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36892" g_stop="36834" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34236" g_stop="33860" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="431" r_length="376" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E216869" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36892" e_stop="36834"/>
          <exon e_start="34236" e_stop="33860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATA</genome_strand>
        <mrna_strand>CCTG-AAAAGTTGCTGTGGCTTGTAT-AGTTGTTT-CAGGATCAAATA-ATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTT-AATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCACATAGTTATATCCTTTGGGTCCCGACATAAGCTTCAAAGCTTTGTTATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219720" ref_strand="+" ref_description="SGN-E219720 [cLEL-24-O19](-)">
      <seq>tcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcatatagttatatcctttgggttcacacataagcttcaaagctttgttattaaatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="34538" stop="33556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34241" g_stop="33863" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="395"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E219720" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34241" e_stop="33863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTA</genome_strand>
        <mrna_strand>TCGAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCACACATAAGCTTCAAAGCTTTGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733381" ref_strand="+" ref_description="SGN-E733381 [LB04CH08]">
      <seq>gcattaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatctgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgttaccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcacctttcttaatgtttttgcacaagacacttggaattgttatttatccaaaatttcaccagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37786" stop="33609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37486" g_stop="37045" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33916" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="859" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="862" polyA_stop="871"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E733381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37486" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</genome_strand>
        <mrna_strand>GCATTAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAAGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716599" ref_strand="+" ref_description="SGN-E716599 [FB17CB01]">
      <seq>gaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgttaccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcacctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37482" stop="33609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37182" g_stop="37045" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="234" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="33916" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="555" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="573"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E716599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37182" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</genome_strand>
        <mrna_strand>GAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220337" ref_strand="+" ref_description="SGN-E220337 [cLEL-12-J12](-)">
      <seq>tgcaaacaacttcctgaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctaaaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37204" stop="33609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36904" g_stop="36834" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34236" g_stop="33916" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="391" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="418"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E220337" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36904" e_stop="36834"/>
          <exon e_start="34236" e_stop="33916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</genome_strand>
        <mrna_strand>TGCAAACAACTTCCT-GAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAAAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220194" ref_strand="+" ref_description="SGN-E220194 [cLEL-12-J12](-)">
      <seq>gtggcttgtttaagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctaaaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttctccagcaaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37177" stop="33613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36877" g_stop="36834" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34236" g_stop="33916" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="365" r_length="321" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E220194" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36877" e_stop="36834"/>
          <exon e_start="34236" e_stop="33916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCA</genome_strand>
        <mrna_strand>GTGGCTTGTTTAAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAAAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220056" ref_strand="+" ref_description="SGN-E220056 [cLEL-24-O19](-)">
      <seq>tgtctttgcaaggggtcatgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctatgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="34453" stop="33654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34153" g_stop="33954" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E220056" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34153" e_stop="33954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCAC</genome_strand>
        <mrna_strand>TGTCTTTGCAAGGGGTCATGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTATGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728408" ref_strand="+" ref_description="SGN-E728408 [LA17CH08]">
      <seq>ggctcatgctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatctgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaatatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgttaccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37786" stop="33863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37486" g_stop="37045" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34236" g_stop="34163" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="612" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E728408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37486" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="34163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCT</genome_strand>
        <mrna_strand>GGCTCATGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAATATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355227" ref_strand="+" ref_description="SGN-E355227 [cTOS-18-M13]">
      <seq>gaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaggcagggaggtcactgagatgtgttttagttggattgctagagtctttgtctgtatcgagacgtgtatgttggaagaaattatagagaacatcttcggctgaaaacctcaagtttttaaacattgaaattcgtttcaaatggagcaaatctgtagtttggaatcgagggattgttttcactgttgtatatcttagtagggtttgatttatattgttgcctctgtcccattttatgattttagtccttatgaaaagaagagcacctttatatactgggaaacatttactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37692" stop="35360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37392" g_stop="37045" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="444" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="35954" i_length="880">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35953" g_stop="35657" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="741" r_length="297" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E355227" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37392" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="35953" e_stop="35657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTT</genome_strand>
        <mrna_strand>GAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGGGAAACATTTACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216791" ref_strand="-" ref_description="SGN-E216791 [cLEL-1-P7](-)">
      <seq>nngttactgaggttgctgatatccttgtgggaacaatctctgtatgtgatttggataaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgatacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37829" stop="36741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37538" g_stop="37045" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36914" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="510" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E216791" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216791" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37538" e_stop="37045"/>
          <exon e_start="36929" e_stop="36914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTT</genome_strand>
        <mrna_strand>NNGTTACTGAGGTTGCTGATATCCTTGTGGGAACAATCTCTGTATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274772" ref_strand="+" ref_description="SGN-E274772 [cLEN-13-P10]">
      <seq>tttgcttgataagaatagtattgtggttgatgatgatgctccagctgttggattagtgaaagataatgaatctttgcctgatgaacaagttgctgatatccttgtgggaacaatctctgcatgtgatttggataaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37915" stop="36835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37615" g_stop="37135" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E274772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37615" e_stop="37135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAA</genome_strand>
        <mrna_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276767" ref_strand="+" ref_description="SGN-E276767 [cLEN-14-P22]">
      <seq>tttgcttgataagaatagtattgtggttgatgatgatgctccagctgttggattagtgaaagataatgaatctttgcctgatgaacaagttgctgatatccttgtgggaacaatctctgcatgtgatttggataaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37915" stop="36835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37615" g_stop="37135" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E276767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37615" e_stop="37135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAA</genome_strand>
        <mrna_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276766" ref_strand="+" ref_description="SGN-E276766 [cLEN-14-P20]">
      <seq>tttgcttgataagaatagtattgtggttgatgatgatgctccagctgttggattagtgaaagataatgaatctttgcctgatgaacaagttgctgatatccttgtgggaacaatctctgcatgtgatttggataaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37915" stop="36895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37615" g_stop="37195" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E276766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37615" e_stop="37195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGT</genome_strand>
        <mrna_strand>TTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709505" ref_strand="+" ref_description="SGN-E709505 [FA52BA05]">
      <seq>ccatcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaagaaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattgaatccaacccaggagggttgcaaaggagttccagtagcagcagcagtagcagctcagtgaaaaaatatgatgttgctgataagaatgatgttgtggttgatgatgctccaactgttgaattagcgaaaggtattgaatctttgcctggtaagaatagtattatggttgatgatgctccagttgttgaattagtgaaagagattgaatctttgcttgataagaatagtattgtggttgatgatgatgctccagctgttggattagtgaaagataatgaatctttgcctgatgaacaagttgctgatatccttgtgggaacaatctctgcatgtgatttggataaggctgcaatatcagaagacatagttccagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="38417" stop="37102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38119" g_stop="37402" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E709505" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38119" e_stop="37402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAA</genome_strand>
        <mrna_strand>CCATCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTGAAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCCAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736126" ref_strand="+" ref_description="SGN-E736126 [LC04BH01]">
      <seq>accaaacttcgaaatccccccagttccccaagacaccaccaagctaagctaaagcaagaacaagattcttcgatttcagattttgaaacacgaacaatagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaatagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttgtcctggtgaggaggatctgaagcgtgatgataaagagaagtgacagtgagggtagttcccctgcatctcaagattatcagaatcgccaagaccaggttactgagcgagaggttgaagatggagagaagcaattggatgatatcgcgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagaggagattgctggaaatgaagaaggaggtcttgttcaaggtgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattgaatccaacccaggagggttgcaaaggagttccagtagcggcagcagtagcagctcagtagaaaaagatgatgttgctgataagaatgatgttgtggttgatgatgctccaactgttgaattagcgaaaggtattgaatctttgcctggtaggaatagtattatggttgatgatgctccagttgttgaattagtgaaagagattgaatctttgcttgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39160" stop="37303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38860" g_stop="38618" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37603" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="776" r_length="532" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E736126" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38860" e_stop="38618"/>
          <exon e_start="38132" e_stop="37603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTTCAAAATCCCCCCA-TTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAG-AGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGAT-TCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAG</genome_strand>
        <mrna_strand>ACCAAACTTCGAAATCCCCCCAGTTCCCCAAGACACCACCAAGCTAAGCTAAAGCAAGAACAAGATTCTTCGATTTCAGATTTTGAAACACGAACAATAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAATAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTGTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCGCCAAGACCAGGTTACTGAGCGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATATCGCGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGAGGAGATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAAGGTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCGGCAGCAGTAGCAGCTCAGTAGAAAAAGATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAGGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326543" ref_strand="+" ref_description="SGN-E326543 [cTOC-17-D15]">
      <seq>aaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaaggaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaattatgattgaatccaacccaggagggttgcaaaggagttccagtagcagcagcagtagcagctcagtagaaaaatatgatgttgctgataagatggatgttgggggtgatgatgctccaactgttgatttagcgaaggtattgaatctttgcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39157" stop="37376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38857" g_stop="38618" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37676" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="696" r_length="456" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E326543" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38857" e_stop="38618"/>
          <exon e_start="38132" e_stop="37676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGG</genome_strand>
        <mrna_strand>AAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGGAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATTATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGATGGATGTTGGGGGTGATGATGCTCCAACTGTTGATTTAGCG-AAGGTATTGAATCTTTGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312829" ref_strand="+" ref_description="SGN-E312829 [cTOA-8-M13]">
      <seq>taagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaaggaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattgaatccaacccaggagggttgcaaaggagttccagtagcagcagcagtagcagctcagtagaaaaatatgatgttgctgataagaatgatgttgtggttgatgatgctccaactgttgaattagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39117" stop="37397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38817" g_stop="38664" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38663" i_stop="38133" i_length="531">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37697" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="590" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E312829" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38817" e_stop="38664"/>
          <exon e_start="38132" e_stop="37697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAA</genome_strand>
        <mrna_strand>TAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGGAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710301" ref_strand="+" ref_description="SGN-E710301 [FA55AA10]">
      <seq>cattttcatagaaatagaggggacccaatacccatctgttactcactcttctccattggtactaccaaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcacctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaagaaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattgaatccaacccaggagggttgccaaggagttccagtagcagccagcagtagcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39222" stop="37469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38923" g_stop="38618" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37769" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="671" r_length="365" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E710301" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38923" e_stop="38618"/>
          <exon e_start="38132" e_stop="37769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAG-CAGCAGTAGCAGCTC</genome_strand>
        <mrna_strand>CATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCACCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCCAAGGAGTTCCAGTAGCAGCCAGCAGTAGCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301067" ref_strand="+" ref_description="SGN-E301067 [cLEW-22-J15]">
      <seq>aaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaaggaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39157" stop="37523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38857" g_stop="38618" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37823" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="550" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E301067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38857" e_stop="38618"/>
          <exon e_start="38132" e_stop="37823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGA</genome_strand>
        <mrna_strand>AAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGGAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329142" ref_strand="+" ref_description="SGN-E329142 [cTOD-2-M13]">
      <seq>tttgattttcatagaaatagaggggacccaatacccatctgttactcactcttctccattggtactaccaaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39226" stop="37621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38926" g_stop="38618" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37921" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="521" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E329142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38926" e_stop="38618"/>
          <exon e_start="38132" e_stop="37921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAAT</genome_strand>
        <mrna_strand>TTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301709" ref_strand="+" ref_description="SGN-E301709 [cLEX-9-B20]">
      <seq>ttcgtttgattttcatagaaatagaggggacccaatacccatctgttactcactcttctccattggtactaccaaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39230" stop="37650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38930" g_stop="38618" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37950" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="496" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E301709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38930" e_stop="38618"/>
          <exon e_start="38132" e_stop="37950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATG</genome_strand>
        <mrna_strand>TTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689344" ref_strand="+" ref_description="SGN-E689344 [t3_tus_84_E07]">
      <seq>agtaagctcagagaacaagtcgctaaacagcaacaggcagtcatcaagcagtttagtgcaactggttatgaaagttcagatgttatggtcattgatgaaatggagatgcaattgcatcatcaactggacaagttgtataagtctacccgggagaaaagggattttcagaaagagattgttaaggcagctgaaacatttacagctataggatacaagcatatagaagcaggaactaaattatcagaagattgctgcaaatatggagtcgaaaatcccaatgacgaggtgttagctaaggctgcttctatttacggcgatgctcgtaaacatgcagagaaggaggttgaagatctaaataaactattcttcagtcaggtactggaaccattgagagctatggtagctggttctcccttagaggatgctcgtcatctagctcagcgctacagtaaaatgaggcaagaggcggagatacaggcaaccgaagtttctagaagacaagctcgagtgagggaagctcccatcccggagaatgtggcaaagctgcacgcagcagaaactaaaatgcaggaactcaaagccaacatgacagtactcggtaaagaagcagcagcagcattagctgctgtagaatcacagcaggagaggcttacatttcagaggcttgttgcaatggttgaagcagaaaagctttatcacgagagagttgctgttattctgggtaatattgaagctgagatagtttctgaaaagcagcgaaaagaggctgctcctcctgtaaccacacttcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="48747" stop="59089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49047" g_stop="49082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49083" i_stop="54839" i_length="5757">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54840" g_stop="54962" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="159" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54963" i_stop="56589" i_length="1627">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56590" g_stop="56655" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56656" i_stop="56993" i_length="338">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56994" g_stop="57143" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="375" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57144" i_stop="58063" i_length="920">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58064" g_stop="58165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="477" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58166" i_stop="58282" i_length="117">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58283" g_stop="58480" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="675" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58481" i_stop="58583" i_length="103">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58584" g_stop="58646" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="738" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58647" i_stop="58733" i_length="87">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58734" g_stop="58789" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="794" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E689344" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49047" e_stop="49082"/>
          <exon e_start="54840" e_stop="54962"/>
          <exon e_start="56590" e_stop="56655"/>
          <exon e_start="56994" e_stop="57143"/>
          <exon e_start="58064" e_stop="58165"/>
          <exon e_start="58283" e_stop="58480"/>
          <exon e_start="58584" e_stop="58646"/>
          <exon e_start="58734" e_stop="58789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAGGTCCACCCAAGAATTCTTTTTTCTTGATCCAATTTTCTTTGTTTGGGGCTGTGAGAAAATGTGATTTTCTTGGAATTCGGGGGTAATGTTTACGCGTTTCTTCTTCTGGGTATTCCTCATCTAGTAGAACTGTAAAATGGGTAGAGTTTCAATTTTGGATTGATCATCTTTTTTATCTTCATTTGGTGGTCCATCTTGGTTTAATGTGCGAATGAATACTTGAATTCTTGACAATCACTGTATAAAAGTGAGGGAAGATTTTAAGCTTTATGAATTTCTATGTTTGTCAGTTTTTTCTTGAATTGGATGTGTTGCCAAAAAAAATGTCTTTTTCAGATTTTATTCTCCCTAATTGTAATTACTTTGGGCTTTGGAATTGGTATGGTAATACAAAAAGGTGCTAGGAGTAGAGGTGGATCCATGATTTGAAGTTTATGCCCTTTGATGTTACTGGGTTCTAAAAGTTATAATTTGTACATAGTAAATGAATAGTTTAAGATAATTACAAGGTTTGATGTAAACCAATTGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACATCCTCCCTCAAACTGATGCTTTGAATACATCCTTCAAGCACAGTTTGGTCATTAAGTGTTCATGTTGTTGCCTGCCAAGACTCTTGGTTAATAGATCTGCCTGCTGTTCCTTAGTAGAAACATAATGGGTTTTGATAACACCTTGTATAATCTTGTCTCTCACAAAATGACAATCAATGTCAATGTGCTTAGTTCTTTCATGAAAAATGGGATTTGCTGCAATCTGAATAGCAGCTTTGCTATCACAATAGAGACATATTGGAACCTTAATACTGATTCCCAGCTCTTTATACAAACCAATCAACCAAGTTATTTCAGCCACAACAGAAGCCATGCTTCTAAACTCTGCTTTAGCAGAGCTTCTAGCTACTGTTTCTTGTTTCTTTGACTTCCAAGACACTATAGCATTGCCAAACTTCACTAAGTATCCCGTGACAGACCTTCTAGTCTGTAAACAACCACCCCAGTCAGAATCACAATATGCTACAAATTTTCCAGAACTATCTGAGGGCATTAGAAGACCAAGACCTGGAGCATTTTTTATATATTTCACTACTCTTAAGGCAGCATTCATGTGAGATTGTTTGGGACTATGCATGAATTGACTAAGCACTTGCACTACATATGCAATGTCAACTCTAGTCATAGTAAGATATAATAACTTTCCTACTAGCCGTTGATATTGAGTAGGATCAACAAGTAATATATCTTCACTTGTAGAACCTGCTTCCTTAGTTATAAAATCATCATAGTCAACTGATGTAAGTTTCAGATTTGTCTCCAAAGGTGTGTTAACTGGTTTAGTGCCACTCAATCCCAACTCACTAATTAGTTCTAATGCATACTTCCTTTGGCTCATCACTATTCCCTTTTGTGATCTCACAAATTCAATTCCAAGGAAGAACTTCAATTCTCCAAGATCTTTCATTTTGAACTTTAGCTTTAAGTCATTCCTTGTTTGTAGAATCAGATCTGTACTGCTTCCTGTCACCAGCAAATCATCCACATAAACCAACACAACTACCAACTCTCCTTGAACTGTCTTGGTGAATAAGGAATAGTCAAAATGACTTTGTGAGAAGCCAAGTTGTATCAATGCATCAGTGAGTTTCTTGTTCCATTGCCTAGGTGCCTGTTTGAGTCCATAGAGAGACTTATGTAATTGAAGACAACATGCTTCCCCTCCTGGCTAGCAAAACCAGAGGGAACCTCCAAATACACTTCCTCCACTAAATCCCCTTGAAGAAAAGCATTATGAACATCCATCTGAAAAATAGACCAATGTTTAGCTGCTGCCACAGCCACAACTGACCTGACAGTGACCATCTTAGCAACTGGAGAGAAGGTCTCAGTGTAATCTAACCCCTCTTGTTGGCTATAACCTTTAGCTACAAGTCGAGCCTTGTACCTTTCCACAGCCCCAGAAGAAGATGTGTATTTAACTTTGAACACCCATTTACACCCAATAGGTTTCTTTCCAGGTGGTAGTTCAACTAAACTCCAAGTGTGATTATCTTGTAATGCTTGAATTTCAGATTGCATAGCAGCCACCCAATTTGGATCTTTAATAGCCTCAGTATAAGAAGTAGGTTCTTTGATGACAGAATAAGATGCCAAAGCAGCTCTACACACAGGTGATAAGTGATCATAACTAACCACATCAGATACTGGATAACAACAATTTGCACTTCCTTTGCTTGTGGAGACATAGTCATGCATCCAAATGGGAGGCTTAGTAGTCCTGGAAGACTTTCTAGTAATAGGAACTGTTGGAGATTGTAGTGTTGGAGTTTCAGAAACAGAAGCATCACCCATTGAAGAACTATCCATAGAAGGAACAGAAGAGGAAGGAGCAGGAGCAGGAATATTGAATGATGGAGCATTATTCTCTATATAGGATGACTGCAGTTCATCTTCCTTCGAGGAAAACAAATGAGAAGGAGAAGTGGAATTTGTCTTGAAAGGAAAAACATCTTCCTGAAATAAGACATCCCTACTTGTCAAAAATACTTTGGACTCCAAATCATACATAGTATAGCCCTTTTTTGACACTGAGTAACCAAGAAATGCTGCAGGAACAGCTCTTGGAGAAAATTTGTCCAACTTTCTTACCTAAGTTACATACCCCAAACAGCCAAATACTTTCATGTGAGCTAGAGAAGGTGAGTGTCTATGAAGTCTCTCAAAAGGAGATTTATCTTGAATGATTGCAGAAGGCAGTCTATTAATGATGTATACAGCAGTGATCACACAATAACCCCAAAATTTCAATGGTACACCAGCCTGAAATCTAATAGCTCTTGCTAAAACTAAAATGTGTCTATGTTTCCTCTCTATCACTCCATTTTGTTGTGGAGTGTAAGAGCAAGAACTTTGATGTACAGTCCCAAAAGACTTTAGCAATCCATTCATTTGTGAGTTAAAGAACTCACACCCATTATCAATCCTAAGACACTTCACCACAGAAGAATAAACAGTCTGAACCATAAGCAGAAATTCCTTAATCACAACAACAACATCAGCTTTAGAAGGTAGTAGAAACAACCAAGTATATCGAGAATAGTCATCAACAAGTGTAAGAAAGTATTTTTTTCCATTATGAGTAGGAACTCTATAAGGACCCCAAACATCACCATGAACTAACTGAAAACAACACTCAGAAGTAGTAGTGCTTAATGGAAAAGACAGTCTAGTTTGTTTTGCTAAAGGACACACATTACAACTCTTGATACATTTGTCCCAATGTGTAGAATTATGACCAAACAGCTTGCTTATAGTGACAGAAGAGGTGTGACCCAACCTCTTGTGCCAAAGATTCATACTCATGCTATAGCTATCAGAATCTGTAGAAGACATTCCAAGTGATGAAGAACAGGCATTAGTAGCTGCAGCAGCAACATTTGCTGTAAATGCTTTCTTATGACCTGATTGAAACACATACAAGCCATTTTCTTCCTTACCAATCCCCTTCACCTTGCCACTTGAGAGATCCTGAAGAATACAAAAATGAGGATAGAATAATACAGCACACTGAAGCTCCTTTGTCAGTTGAGAAACAGACAACAAATTGTATTTGAACTCAGGAATATGCATTACATTGGTTATCTCTTGACCAGGAAAGAGATAGGATGATCCTGTGTGAGTTACATTGACTACATTACCAGTAGGCAAATGAACTTTGCCTAGACCACTCTTGTTTACTGTTGTAGTGTGGGATAACAGCTCAACAGAACTAACCATATGACTAGAAGCACCAGAATCCACTATCCACTTAACATCATCTGAAATGATAGTAGTATGAGGGATCATACCTGCTGTCAAGGCTACATGATCAGCTTCAGATTTTTCTGAATCAAGCATGGTTAAGATATGTTTGTATTGTTGTTCAGTAAATTGAGGAATAGCACCAAATGCATCAGTAGAACCTTTAGACATGTGAGAAGATCCTGCAAAATTGGCAGATTGACCCCCAAACTGATTTCCAATATCACTAGGATTAGGATTGCCCTTACTAGTTTCATTTTCTTTGATATATGATCCTGTTTTCTTCTTGAATTTATAATCTGGAGGATATCCAATTAATTTGTAACACACTGCTTTTGTGTGACCTGTGAGATGACAATGATCACAGTAGAGATCACTCCTTCTGCTTCTGCCCTTGTAAGAGGAATTATTCCCCTGATAGTTAGTGCGTACACTCGAGTTGCTTTTACCACTAAACAAAGCTGTCCCTCAGCAATTTCAGAGCTGTAAGAGGAAGTAGAAGAACCCAGAGATCTTCTACTTTCCTCAGAAATGATCATGGCATATGCCTTATTAATCGATGGAGTCGGAAGCATCATCATGATATGATTTATAGACTGTGAGTAAGACTCATTTAAACCCATCAGAAATTGAAGAAGGCGTTGATACTCAAAGTGTTCCACATATTTCCTAGACTCACAACTACATCCAGGACATGGCATCAATGCATCAAATTCTGCCCATAGTTCTCTTAGTTTTGAGAAATAGGTTGAAACAGAAGAAATTCCTTGGTTAAGAGTAGAAATTTGTGAATGAAGGAAGAAGATTCGAGATCCATTAACCTTGTCAAATCGTTCTTGTAGATCAGTCCACACCTTATATGCACTTGTAGCATATACAATCCCACTAAGTAATTCAGTACATACAGAATTCATAATCCATGAAAGGACTATGGCATTACATTTCTCCCACAAATCATGAAGAGAAGCATCAAATTTCTCCTTAGGATATCGACCATCCACAAATCCTAACTTGCTTTTACCTAATAGACTAATTCGCATTGAACTGCTCCATAATGCATAATTCTCAGGGCCTGTTAGTTTAATCGAAATTAGGGAACTACCTGGTGTATCATTGGGCTGAAGAAACAAAGGACGGTGTTGATCGATTGTTACCAAAGTGGGTACAACTTCAGCTCCAATTTCCAGATCTGCAGGTGAACTAGCATTCACCATTGTTGAGATGTCGAACAGGAGAAAACAGAAACAGTAAAGAAGTGAGATGAAACGTGAACCAGAAACTGAGAAGATCGAAGGAATATGAGATCGATTACTCAAGCTCTGATACCATGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACACCAATATCCTAAGATTGAAACATTTCTATTTAATTGAGTGATTGACTTTTGAGGGATGGTATAAATTGTTTCTTTCCATAGGTAAGTGTTAGTTTTATAGTGTCATTTATTGATTCTTACTTGCTAGAGATATTGATTCTTAAACACAGGCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGGGTAAGGGTTCTGTCACAAAATGTAAATAAAAGCTTGTTCGGTGCCTACAGTTCTTTTTCTTATATTGCAAATGTTTGATGTTGTGTCATTTACTTTCTAACTATGAAATTTACTACAGTAGTATATACCTGACTGCAATTTACTTATTTGCAGAATAACTGCTAATATATTCGTTTAGCATGTAATAGCTACTTAAATATTTAGTCATTATCAAAGACCTTTACTTTGCTCTTCCTGCTTCTTACGAATAGTTGATAATGCAAAAAGGTGAGTCATTTAGCCAAAATGATTTCTTTTAATGGGAGGTAGAGCATTCTTTGGTGTTAGTTAAATCTGACTTATAAAAGGAAGATGCCAAAATTTGAAGCAAGATTGCTATTTTTAAGTGCATTTGAAACTTGGTAATAGTTGTTAATAAGTAATATTGTCATGGAGTTAAGAAAAACTTAGTTGTTTCTTCATTTTCTATTACTTAATAAGTAGTTGGAGTGAGCAGCTTCCATACAATTTTGAAGAGGGATGCAAAGTGGGATGTAAAGATTCTTGAGTTCGAATATAGATAGTTTTGGAGATATTTTTCTTGTAGATGCATGCACGAACATGGATTTGCTGTGTTGAAAGTTTAGAGAACATATTCGTATTCACAACATGTCTAGATCTATTAAATTTAGTTAGAGCATTGGAGAACATTTCATATTGTTCTGTACTACACTGTAAAATATTTACTTACAATCATAGAAATAGATAATAACTACTCAACATGATGTACACTATAAATTGCCATCTCTTTTCTCTTATTTCAAATAGAACCAAAGTCTATTTTCTGGAGACTTAAGTTACTTCTGTCTGAAGTGTGGCCTAGTGGTCAATGCAATGGGTTGAAAACCACGAGGTCTCAAATTACAAAAACCTCTAGGTGATTCTTCCCATCTGTTCTAACCTTGATGGACAGACTTCGTTGTGGGTGGAAGGTGTCCGTATCAGTGCTACATGGTCTGAATATTCTGAACTAAATGGTTGCCTCTGTTGTGATTATTAGCTGGTTTACATTTTTGCCCGTCAAGGCTGAGATTTCACTTACCTGACCTGATCACGATGTTGTTCAGCTCGCCGCATTGATATGCATTCACTTTACTAAATTAGCTTGAGCTTGACCTATTTTAAGATATCCTTAGCAGGCTTGTTTAGTCATTTTCTTCTGCTCCGGCCTCTATAATTTATTGTTGTCTTGTTAAGATGCACTAGATCTTCTTCTTATGAAAGTTGAGCATAATGATATCGAGCTTGGCTTGTTGTATCAGGTTGAGCTATTCAGCTTGGCTTGTCTACATGCATCATTTTTCTAATTCTTCTTCGGATGACTCATATTAAGATACTTTTATATGCACTTGGCTTGTCATTTGTCTCTTGATTTTTTATTGTTGTTGTTGGTGCTAGGCACAAGACCATGTATATCTATGAACAAGATAAATGTCATGCTAGTGTAGAGCATTTCATTCCTATATCTTGTCTTTTGTAGTTATGACTAGGACTTGGCAAATTCATTGCTTAATTTTGATCTAAACTCACACTGTGTGTTTCCTTCTCTTTCTGAAGTTAGGATATCTCTGTTCGTATCATTTTGCAGGATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAAGCAGGTAAAACTTTTGAAGGGTATTTTGTATAAATAGATCTACTTTCAGATGGAACTTTGTTCTAGTCATGATTCACTACCTCTATAATATTCAGGCAGCCCTTTATGTCTGTTTGCTGCTACTTCTAAAATATTTAGGCAGTCCTTTATGCCTTCTTGACGATATAACAAGATTATTCTTAACCTGGATGTTATATTCTTATTTTCTGGATACTGCCAGGCTAGAATCTCGTCCTCCCCTGTCCCATTATTGTGAGACTGAGACATGTTTTTTCTTTTTGCCTTTTTTTTTTTGCTTCTGTGTGTATTTCAACTTATTTGGTGGAAGTTTATGGTAGCCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTTGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAGCATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAGGTAGGTACAATGTGCATGTAATCTGGAGTATGTTAATGAAAACTAATTAGAAGCAATATATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTCTTCCCTAGACCTAAATGTCAGTTGATTACTGGCTATCTTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCTTAATGGAAACTAATTAGAAGCAATAGATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTTTTCCCTAGACCTAAACATCAGTAGATTACTGGCTAAATTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCATACATGAATAGGCTTATAGCTGCTTTTTATGGGAAAGACTGCTTATGAATCTGTGAAGATAAAGAAATCAATGATGATAGTCTTAAGTTCTGGTGCTGATAGCAAGTGACAAATGCATAAAGAAATTGATGAAACAGTTTCTCGAAAACCTAAAGGATAATCATTTTCCTTTCCAGTTTTCTCCTTCGACGTGTGTGCCAAGAAAGAGGTCACTTCCATGTGCACATGTTGATCTTGGAAATTTTTTCTTTGGTTTCTGGGTGGTTTTCTGTAAGCACATGCTTCATTTGCAAAATGAAGAAGTAATCACCCTCTTTCCCAACCAAAAAGAAGGATTAATGGCATACTGTAAACATCATGATACCGACCTTTTTGTCCCATGAAACATAATTATGGCAAATATGTCAATACCTTCTTTTTACTTTTCTTTCTGTCTTTTCTTTTCAAGATACTGCACATTTATTTTTTTGATTCATGACACTTAGTAACATTAATCTATGTTCAATACTTCATAGTTCAGCCTTCGGCCGCAGACTAAAATGAGCTTTTGGATTTCCAGGTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGCGGCAAGAGGCGGAGATACAGGTTACTGTAACGATTATTTCTTTTGCTAAAGACTATGATAAACGCCTGTTGATACTTGTCTTATTGTTCAATTATACACTGTCATCACATCCTTAGTATTGAATACAAAATAAGCAGGCAACCGAAGTTTCTAGAAGACAAGCTCGGGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACTCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATGGTATGTATGCTGGTGCATATTTGCCTCTCATGGAATTTAAACTTGTGTTTTGCATGGTCAACCATTTTCATACAATGGTTAAAGTGAGTATAATCATCTGCAGGTTGAAGCAGAAAAGCTTTATCATGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAGGTGAGTGTTTCTCCTTTTGTATTTCTCCAGAGGTATGCTTTACACCTAGGTAATTTTTTCTTACTCGACAATTTACAATTTGTACAGATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAGCCACACTTCCTGT</genome_strand>
        <mrna_strand>AGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATTGATGAAATGGAGATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAA..................................................................................................................................................................................................................................................................................................................................................GCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTCGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAACATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGAGGCAAGAGGCGGAGATACAG.....................................................................................................................GCAACCGAAGTTTCTAGAAGACAAGCTCGAGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACGCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATG.......................................................................................................GTTGAAGCAGAAAAGCTTTATCACGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAG.......................................................................................ATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAACCACACTTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333014" ref_strand="+" ref_description="SGN-E333014 [cTOD-19-A9]">
      <seq>gtaagctcagagaacaagtcgctaaacagcaacaggcagtcatcaagcagtttagtgcaactggttatgaaagttcagatgttatggtcattgatgaaatggagatgcaattgcatcatcaactggacaagttgtataagtctacccgggagaaaagggattttcagaaagagattgttaaggcagctgaaacatttacagctataggatacaagcatatagaagcaggaactaaattatcagaagattgctgcaaatatggagtcgaaaatcccaatgacgaggtgttagctaaggctgcttctatttacggcgatgctcgtaaacatgcagagaaggaggttgaagatctaaataaactattcttcagtcaggtactggaaccattgagagctatggtagctggttctcccttagaggatgctcgtcatctagctcagcgctacagtaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="48748" stop="58443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49048" g_stop="49082" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49083" i_stop="54839" i_length="5757">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54840" g_stop="54962" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54963" i_stop="56589" i_length="1627">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56590" g_stop="56655" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56656" i_stop="56993" i_length="338">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56994" g_stop="57143" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="374" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57144" i_stop="58063" i_length="920">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58064" g_stop="58143" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="454" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E333014" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49048" e_stop="49082"/>
          <exon e_start="54840" e_stop="54962"/>
          <exon e_start="56590" e_stop="56655"/>
          <exon e_start="56994" e_stop="57143"/>
          <exon e_start="58064" e_stop="58143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAGGTCCACCCAAGAATTCTTTTTTCTTGATCCAATTTTCTTTGTTTGGGGCTGTGAGAAAATGTGATTTTCTTGGAATTCGGGGGTAATGTTTACGCGTTTCTTCTTCTGGGTATTCCTCATCTAGTAGAACTGTAAAATGGGTAGAGTTTCAATTTTGGATTGATCATCTTTTTTATCTTCATTTGGTGGTCCATCTTGGTTTAATGTGCGAATGAATACTTGAATTCTTGACAATCACTGTATAAAAGTGAGGGAAGATTTTAAGCTTTATGAATTTCTATGTTTGTCAGTTTTTTCTTGAATTGGATGTGTTGCCAAAAAAAATGTCTTTTTCAGATTTTATTCTCCCTAATTGTAATTACTTTGGGCTTTGGAATTGGTATGGTAATACAAAAAGGTGCTAGGAGTAGAGGTGGATCCATGATTTGAAGTTTATGCCCTTTGATGTTACTGGGTTCTAAAAGTTATAATTTGTACATAGTAAATGAATAGTTTAAGATAATTACAAGGTTTGATGTAAACCAATTGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACATCCTCCCTCAAACTGATGCTTTGAATACATCCTTCAAGCACAGTTTGGTCATTAAGTGTTCATGTTGTTGCCTGCCAAGACTCTTGGTTAATAGATCTGCCTGCTGTTCCTTAGTAGAAACATAATGGGTTTTGATAACACCTTGTATAATCTTGTCTCTCACAAAATGACAATCAATGTCAATGTGCTTAGTTCTTTCATGAAAAATGGGATTTGCTGCAATCTGAATAGCAGCTTTGCTATCACAATAGAGACATATTGGAACCTTAATACTGATTCCCAGCTCTTTATACAAACCAATCAACCAAGTTATTTCAGCCACAACAGAAGCCATGCTTCTAAACTCTGCTTTAGCAGAGCTTCTAGCTACTGTTTCTTGTTTCTTTGACTTCCAAGACACTATAGCATTGCCAAACTTCACTAAGTATCCCGTGACAGACCTTCTAGTCTGTAAACAACCACCCCAGTCAGAATCACAATATGCTACAAATTTTCCAGAACTATCTGAGGGCATTAGAAGACCAAGACCTGGAGCATTTTTTATATATTTCACTACTCTTAAGGCAGCATTCATGTGAGATTGTTTGGGACTATGCATGAATTGACTAAGCACTTGCACTACATATGCAATGTCAACTCTAGTCATAGTAAGATATAATAACTTTCCTACTAGCCGTTGATATTGAGTAGGATCAACAAGTAATATATCTTCACTTGTAGAACCTGCTTCCTTAGTTATAAAATCATCATAGTCAACTGATGTAAGTTTCAGATTTGTCTCCAAAGGTGTGTTAACTGGTTTAGTGCCACTCAATCCCAACTCACTAATTAGTTCTAATGCATACTTCCTTTGGCTCATCACTATTCCCTTTTGTGATCTCACAAATTCAATTCCAAGGAAGAACTTCAATTCTCCAAGATCTTTCATTTTGAACTTTAGCTTTAAGTCATTCCTTGTTTGTAGAATCAGATCTGTACTGCTTCCTGTCACCAGCAAATCATCCACATAAACCAACACAACTACCAACTCTCCTTGAACTGTCTTGGTGAATAAGGAATAGTCAAAATGACTTTGTGAGAAGCCAAGTTGTATCAATGCATCAGTGAGTTTCTTGTTCCATTGCCTAGGTGCCTGTTTGAGTCCATAGAGAGACTTATGTAATTGAAGACAACATGCTTCCCCTCCTGGCTAGCAAAACCAGAGGGAACCTCCAAATACACTTCCTCCACTAAATCCCCTTGAAGAAAAGCATTATGAACATCCATCTGAAAAATAGACCAATGTTTAGCTGCTGCCACAGCCACAACTGACCTGACAGTGACCATCTTAGCAACTGGAGAGAAGGTCTCAGTGTAATCTAACCCCTCTTGTTGGCTATAACCTTTAGCTACAAGTCGAGCCTTGTACCTTTCCACAGCCCCAGAAGAAGATGTGTATTTAACTTTGAACACCCATTTACACCCAATAGGTTTCTTTCCAGGTGGTAGTTCAACTAAACTCCAAGTGTGATTATCTTGTAATGCTTGAATTTCAGATTGCATAGCAGCCACCCAATTTGGATCTTTAATAGCCTCAGTATAAGAAGTAGGTTCTTTGATGACAGAATAAGATGCCAAAGCAGCTCTACACACAGGTGATAAGTGATCATAACTAACCACATCAGATACTGGATAACAACAATTTGCACTTCCTTTGCTTGTGGAGACATAGTCATGCATCCAAATGGGAGGCTTAGTAGTCCTGGAAGACTTTCTAGTAATAGGAACTGTTGGAGATTGTAGTGTTGGAGTTTCAGAAACAGAAGCATCACCCATTGAAGAACTATCCATAGAAGGAACAGAAGAGGAAGGAGCAGGAGCAGGAATATTGAATGATGGAGCATTATTCTCTATATAGGATGACTGCAGTTCATCTTCCTTCGAGGAAAACAAATGAGAAGGAGAAGTGGAATTTGTCTTGAAAGGAAAAACATCTTCCTGAAATAAGACATCCCTACTTGTCAAAAATACTTTGGACTCCAAATCATACATAGTATAGCCCTTTTTTGACACTGAGTAACCAAGAAATGCTGCAGGAACAGCTCTTGGAGAAAATTTGTCCAACTTTCTTACCTAAGTTACATACCCCAAACAGCCAAATACTTTCATGTGAGCTAGAGAAGGTGAGTGTCTATGAAGTCTCTCAAAAGGAGATTTATCTTGAATGATTGCAGAAGGCAGTCTATTAATGATGTATACAGCAGTGATCACACAATAACCCCAAAATTTCAATGGTACACCAGCCTGAAATCTAATAGCTCTTGCTAAAACTAAAATGTGTCTATGTTTCCTCTCTATCACTCCATTTTGTTGTGGAGTGTAAGAGCAAGAACTTTGATGTACAGTCCCAAAAGACTTTAGCAATCCATTCATTTGTGAGTTAAAGAACTCACACCCATTATCAATCCTAAGACACTTCACCACAGAAGAATAAACAGTCTGAACCATAAGCAGAAATTCCTTAATCACAACAACAACATCAGCTTTAGAAGGTAGTAGAAACAACCAAGTATATCGAGAATAGTCATCAACAAGTGTAAGAAAGTATTTTTTTCCATTATGAGTAGGAACTCTATAAGGACCCCAAACATCACCATGAACTAACTGAAAACAACACTCAGAAGTAGTAGTGCTTAATGGAAAAGACAGTCTAGTTTGTTTTGCTAAAGGACACACATTACAACTCTTGATACATTTGTCCCAATGTGTAGAATTATGACCAAACAGCTTGCTTATAGTGACAGAAGAGGTGTGACCCAACCTCTTGTGCCAAAGATTCATACTCATGCTATAGCTATCAGAATCTGTAGAAGACATTCCAAGTGATGAAGAACAGGCATTAGTAGCTGCAGCAGCAACATTTGCTGTAAATGCTTTCTTATGACCTGATTGAAACACATACAAGCCATTTTCTTCCTTACCAATCCCCTTCACCTTGCCACTTGAGAGATCCTGAAGAATACAAAAATGAGGATAGAATAATACAGCACACTGAAGCTCCTTTGTCAGTTGAGAAACAGACAACAAATTGTATTTGAACTCAGGAATATGCATTACATTGGTTATCTCTTGACCAGGAAAGAGATAGGATGATCCTGTGTGAGTTACATTGACTACATTACCAGTAGGCAAATGAACTTTGCCTAGACCACTCTTGTTTACTGTTGTAGTGTGGGATAACAGCTCAACAGAACTAACCATATGACTAGAAGCACCAGAATCCACTATCCACTTAACATCATCTGAAATGATAGTAGTATGAGGGATCATACCTGCTGTCAAGGCTACATGATCAGCTTCAGATTTTTCTGAATCAAGCATGGTTAAGATATGTTTGTATTGTTGTTCAGTAAATTGAGGAATAGCACCAAATGCATCAGTAGAACCTTTAGACATGTGAGAAGATCCTGCAAAATTGGCAGATTGACCCCCAAACTGATTTCCAATATCACTAGGATTAGGATTGCCCTTACTAGTTTCATTTTCTTTGATATATGATCCTGTTTTCTTCTTGAATTTATAATCTGGAGGATATCCAATTAATTTGTAACACACTGCTTTTGTGTGACCTGTGAGATGACAATGATCACAGTAGAGATCACTCCTTCTGCTTCTGCCCTTGTAAGAGGAATTATTCCCCTGATAGTTAGTGCGTACACTCGAGTTGCTTTTACCACTAAACAAAGCTGTCCCTCAGCAATTTCAGAGCTGTAAGAGGAAGTAGAAGAACCCAGAGATCTTCTACTTTCCTCAGAAATGATCATGGCATATGCCTTATTAATCGATGGAGTCGGAAGCATCATCATGATATGATTTATAGACTGTGAGTAAGACTCATTTAAACCCATCAGAAATTGAAGAAGGCGTTGATACTCAAAGTGTTCCACATATTTCCTAGACTCACAACTACATCCAGGACATGGCATCAATGCATCAAATTCTGCCCATAGTTCTCTTAGTTTTGAGAAATAGGTTGAAACAGAAGAAATTCCTTGGTTAAGAGTAGAAATTTGTGAATGAAGGAAGAAGATTCGAGATCCATTAACCTTGTCAAATCGTTCTTGTAGATCAGTCCACACCTTATATGCACTTGTAGCATATACAATCCCACTAAGTAATTCAGTACATACAGAATTCATAATCCATGAAAGGACTATGGCATTACATTTCTCCCACAAATCATGAAGAGAAGCATCAAATTTCTCCTTAGGATATCGACCATCCACAAATCCTAACTTGCTTTTACCTAATAGACTAATTCGCATTGAACTGCTCCATAATGCATAATTCTCAGGGCCTGTTAGTTTAATCGAAATTAGGGAACTACCTGGTGTATCATTGGGCTGAAGAAACAAAGGACGGTGTTGATCGATTGTTACCAAAGTGGGTACAACTTCAGCTCCAATTTCCAGATCTGCAGGTGAACTAGCATTCACCATTGTTGAGATGTCGAACAGGAGAAAACAGAAACAGTAAAGAAGTGAGATGAAACGTGAACCAGAAACTGAGAAGATCGAAGGAATATGAGATCGATTACTCAAGCTCTGATACCATGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACACCAATATCCTAAGATTGAAACATTTCTATTTAATTGAGTGATTGACTTTTGAGGGATGGTATAAATTGTTTCTTTCCATAGGTAAGTGTTAGTTTTATAGTGTCATTTATTGATTCTTACTTGCTAGAGATATTGATTCTTAAACACAGGCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGGGTAAGGGTTCTGTCACAAAATGTAAATAAAAGCTTGTTCGGTGCCTACAGTTCTTTTTCTTATATTGCAAATGTTTGATGTTGTGTCATTTACTTTCTAACTATGAAATTTACTACAGTAGTATATACCTGACTGCAATTTACTTATTTGCAGAATAACTGCTAATATATTCGTTTAGCATGTAATAGCTACTTAAATATTTAGTCATTATCAAAGACCTTTACTTTGCTCTTCCTGCTTCTTACGAATAGTTGATAATGCAAAAAGGTGAGTCATTTAGCCAAAATGATTTCTTTTAATGGGAGGTAGAGCATTCTTTGGTGTTAGTTAAATCTGACTTATAAAAGGAAGATGCCAAAATTTGAAGCAAGATTGCTATTTTTAAGTGCATTTGAAACTTGGTAATAGTTGTTAATAAGTAATATTGTCATGGAGTTAAGAAAAACTTAGTTGTTTCTTCATTTTCTATTACTTAATAAGTAGTTGGAGTGAGCAGCTTCCATACAATTTTGAAGAGGGATGCAAAGTGGGATGTAAAGATTCTTGAGTTCGAATATAGATAGTTTTGGAGATATTTTTCTTGTAGATGCATGCACGAACATGGATTTGCTGTGTTGAAAGTTTAGAGAACATATTCGTATTCACAACATGTCTAGATCTATTAAATTTAGTTAGAGCATTGGAGAACATTTCATATTGTTCTGTACTACACTGTAAAATATTTACTTACAATCATAGAAATAGATAATAACTACTCAACATGATGTACACTATAAATTGCCATCTCTTTTCTCTTATTTCAAATAGAACCAAAGTCTATTTTCTGGAGACTTAAGTTACTTCTGTCTGAAGTGTGGCCTAGTGGTCAATGCAATGGGTTGAAAACCACGAGGTCTCAAATTACAAAAACCTCTAGGTGATTCTTCCCATCTGTTCTAACCTTGATGGACAGACTTCGTTGTGGGTGGAAGGTGTCCGTATCAGTGCTACATGGTCTGAATATTCTGAACTAAATGGTTGCCTCTGTTGTGATTATTAGCTGGTTTACATTTTTGCCCGTCAAGGCTGAGATTTCACTTACCTGACCTGATCACGATGTTGTTCAGCTCGCCGCATTGATATGCATTCACTTTACTAAATTAGCTTGAGCTTGACCTATTTTAAGATATCCTTAGCAGGCTTGTTTAGTCATTTTCTTCTGCTCCGGCCTCTATAATTTATTGTTGTCTTGTTAAGATGCACTAGATCTTCTTCTTATGAAAGTTGAGCATAATGATATCGAGCTTGGCTTGTTGTATCAGGTTGAGCTATTCAGCTTGGCTTGTCTACATGCATCATTTTTCTAATTCTTCTTCGGATGACTCATATTAAGATACTTTTATATGCACTTGGCTTGTCATTTGTCTCTTGATTTTTTATTGTTGTTGTTGGTGCTAGGCACAAGACCATGTATATCTATGAACAAGATAAATGTCATGCTAGTGTAGAGCATTTCATTCCTATATCTTGTCTTTTGTAGTTATGACTAGGACTTGGCAAATTCATTGCTTAATTTTGATCTAAACTCACACTGTGTGTTTCCTTCTCTTTCTGAAGTTAGGATATCTCTGTTCGTATCATTTTGCAGGATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAAGCAGGTAAAACTTTTGAAGGGTATTTTGTATAAATAGATCTACTTTCAGATGGAACTTTGTTCTAGTCATGATTCACTACCTCTATAATATTCAGGCAGCCCTTTATGTCTGTTTGCTGCTACTTCTAAAATATTTAGGCAGTCCTTTATGCCTTCTTGACGATATAACAAGATTATTCTTAACCTGGATGTTATATTCTTATTTTCTGGATACTGCCAGGCTAGAATCTCGTCCTCCCCTGTCCCATTATTGTGAGACTGAGACATGTTTTTTCTTTTTGCCTTTTTTTTTTTGCTTCTGTGTGTATTTCAACTTATTTGGTGGAAGTTTATGGTAGCCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTTGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAGCATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAGGTAGGTACAATGTGCATGTAATCTGGAGTATGTTAATGAAAACTAATTAGAAGCAATATATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTCTTCCCTAGACCTAAATGTCAGTTGATTACTGGCTATCTTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCTTAATGGAAACTAATTAGAAGCAATAGATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTTTTCCCTAGACCTAAACATCAGTAGATTACTGGCTAAATTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCATACATGAATAGGCTTATAGCTGCTTTTTATGGGAAAGACTGCTTATGAATCTGTGAAGATAAAGAAATCAATGATGATAGTCTTAAGTTCTGGTGCTGATAGCAAGTGACAAATGCATAAAGAAATTGATGAAACAGTTTCTCGAAAACCTAAAGGATAATCATTTTCCTTTCCAGTTTTCTCCTTCGACGTGTGTGCCAAGAAAGAGGTCACTTCCATGTGCACATGTTGATCTTGGAAATTTTTTCTTTGGTTTCTGGGTGGTTTTCTGTAAGCACATGCTTCATTTGCAAAATGAAGAAGTAATCACCCTCTTTCCCAACCAAAAAGAAGGATTAATGGCATACTGTAAACATCATGATACCGACCTTTTTGTCCCATGAAACATAATTATGGCAAATATGTCAATACCTTCTTTTTACTTTTCTTTCTGTCTTTTCTTTTCAAGATACTGCACATTTATTTTTTTGATTCATGACACTTAGTAACATTAATCTATGTTCAATACTTCATAGTTCAGCCTTCGGCCGCAGACTAAAATGAGCTTTTGGATTTCCAGGTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAAT</genome_strand>
        <mrna_strand>GTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATTGATGAAATGGAGATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAA..................................................................................................................................................................................................................................................................................................................................................GCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTCGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAACATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211645" ref_strand="+" ref_description="SGN-E211645 [cLEC-67-N11]">
      <seq>gctgtggaaaggtacaaggctcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaattattgagttgggattangaggaactaaactagnttacacacctttggaacaaatctgaagctacatcagttgactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="51567" stop="50293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51267" g_stop="50593" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E211645" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51267" e_stop="50593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGAAAGGTACAAGGCTCGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTC-AATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTAGTGAGTTGGGATTGAGTGGCACTAAACCAGTTAACACACCTTTGGAGACAAATCTGAAACTTACATCAGTTGACTATGATG</genome_strand>
        <mrna_strand>GCTGTGGAAAGGTACAAGGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTATTGAGTTGGGATTANGAGGAACTAAACTAGNTTACACACCTTTGGA-ACAAATCTGAAGC-TACATCAGTTGACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551307" ref_strand="+" ref_description="SGN-E551307 [TUS-50-P10]">
      <seq>tcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="51547" stop="50374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51247" g_stop="50674" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E551307" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51247" e_stop="50674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTC-AATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTA</genome_strand>
        <mrna_strand>TCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688557" ref_strand="+" ref_description="SGN-E688557 [t3_tus_50_p10]">
      <seq>gacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="51545" stop="50374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51245" g_stop="50674" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E688557" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51245" e_stop="50674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTC-AATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTA</genome_strand>
        <mrna_strand>GACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374365" ref_strand="+" ref_description="SGN-E374365 [TUS-33-H6]">
      <seq>ctcctgtagccacacttcctgtaaaccctccggcccacatacctgagaaaacaaaatactttttggccaaggctattcattcttttgaagctgaatcagaaaaggagctaagcttgtctgtcggtgattatgttgtggttcgtaaggtgactcaatcaggttggtcagaaggagaatgccaaggcagggcaggttggtttccatctgagtacgtggagaaacgacaaagagtacctacttctaatggagcaacggaagtttactgaaaagatggtgattttttgttgctggtatttgtggaacagttgccagttcatccatttattcatgcaagagcatagagttgagtgtgtaacatattcattttagttcttttagggttattctggacagtaaatgcttttggtctttttcctttcccttttgtttttaccccagcatagacttgtcatcactgatggattatagctgaaatgcacttagttaagtaccctcttcctctacctgcgaacgaaaaaaaaaaaaaaaaagaaaacaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="58468" stop="110029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58768" g_stop="58838" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59054" g_stop="59128" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59711" g_stop="60083" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="519" r_length="373" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60084" i_stop="61009" i_length="926">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61010" g_stop="61021" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="531" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61022" i_stop="61315" i_length="294">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.774" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61316" g_stop="61339" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="555" r_length="24" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E374365" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58768" e_stop="58838"/>
          <exon e_start="59054" e_stop="59128"/>
          <exon e_start="59711" e_stop="60083"/>
          <exon e_start="61010" e_stop="61021"/>
          <exon e_start="61316" e_stop="61339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAGGTAACCGTCTGCTTTAACAACAGTTGTCTAAGTTGTTATAATCTTATCACAGAATGATTTATTTATTATACTATTTGAAAGAAACTTCTGAGGGAAAGCTGATTGACAATGAGGATATGTTGCTGGTGTGAGCTCTGAAGACACTCTTATCCGTGCAGTGTTACTGTTTATTAATGAGTTGAAGTGGTCTTAGTTTTTGTGTCTCTGTCACACAGGCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAGGTTGTTCTTTAATTCTGGCTCTTCCCTCTTATGATAATAAGTTATTGATTGAAGTTGATAAAACTCACATGTATATCTGCTGGAGCATTCTCCTTTTTCTAATCCTAACAAACCTTTTATGTAAGCCTTCTCAAATTTTCCAGTAAAGATGACTGCTGTTTGTACTACTCACACTAGTCTTCCTTCTAAAGGCTTATTTGATATATGTGCAACTTCCCACTTGAAACCTGCCCCTCTAACTGTCCTTCTCACTTCAAACCTGCCCCTCCTGTCGCCCTTCTCCCATCCGAAAAAGAAAAAAAATAAAGGAAGAATGAAAGTAAACAAAATAAAGAATACTATGTAAATGAAAAAGGAAAGGACACACCTGTAAATTTTCTTGTTCATTGACATTTTTATTCTACTTCTCAAAACTTGTGAAGGTAACAAAACTATGATCTATTCATAGATGTACATGATATGTTCAATGAAACACAGTAAAGTAGAGTTCAAAAGAAGAAACCACAGTTAATTCTTCTATCCTGTTACATCCACGTTTTTTTGAAGAGTGCCTCTCTTTTGCAATTTCATGTTATGTTTCAGGTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTCCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACGAAAAATGTTATCTTTGAAGAAGATGGTTGTGAAAATTGTTGTTGTAGTTTGTGAATTATGTCCTTTTGTTATTGAGGTCAACGTGACACTAACAAAAATGGACAAAGGTTCCATACATATGCATTGCTCTGGAGACTAGCAACAAATGCTCTCTATGATGAAGCAGTATATTAGCAATGAATTGCTTGTCTAAGTGTTTTTATAACATCAGTACATGTGGAAGAAACACACCCTCTTAATACATTCCAGCAGGGGAGGAGGGTTTCGGATTTCTTTAAGTGGAAAATTATACTATTTCTACACTGTCAATGTATATATATATATAATATATATATATATATATATATTTTTTTTTTGTATATATAGTAAATGGTAAATTCCTTTTGACTTCGTGTTTTTTTTTTTTTTTTTATATATATTTTGAACAGTGAAGATTTAGACTTCAAACTCATCTACTTCTGTCTCTCATAGTATTTATTTAGATAATTTACAAATATTTCGTGTGCATACACTCTTAGATGGAATGATTGTTGATATTCTTCATGGTTGTGTAGTGCCTATTTCTTTTCCATTTTTTTCCTTCAATTTATTAAATTTATTCAAAATCCAAAACAGAAATTATAACATAGGGAGTATTATACTTCAACTAAATTAAACTAATGTTATATATTAATTTGAAATGATAAAAAATCTAAACTTTTCAGTAGCTAATCAAAAGGGTTGATATCATTGGTGTTGTGAAGAATAGAGTTATATATTGCCAAGAAAAAGAATACACAAACAATTGTTAATATTAATTCTTCTTGAAAACAAAATAATAGTATTTGATTACATAGAACAAGATGTACATAAGTAGAGCATCAACTTATATTGAAGAGATCATGCAAGTAAATTAATAAAAAAAAATGTAATTTTTATTTATGATCTTATAGACAACAAAAAAGGGCGGATTATACTATATATGATACAACAAAAAGAGCATATTCAAAATTAATATGAACTGCAACTAATTAAAACACGATTAAATGTCCATACATTCACTACTACCCACCTTCTAATTCATATTATTAGACTCTTATTGTTCTGACAAATTCTTTAATAAAACTTTAGATAAAAATGTGTTTTATCAAACTTATAATCTTATTAAATGGTGTTGTGAAACTTAAAATCCTGACGGAATACTATTTTATGTAGCTATTTAATGCCAAGTAAAATAAAATATATATATTTTTAAATAGGGATCAAATAAAACGAAGAAGGGA</genome_strand>
        <mrna_strand>CTCCTGTAGCCACACTTCCTGTAAACCCTCCGGCCCACATACCTGAGAAAACAAAATACTTTTTGGCCAAG.......................................................................................................................................................................................................................GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTGGTTCGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGTTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTTCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACGAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAG......................................................................................................................................................................................................................................................................................................AAAACAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305226" ref_strand="+" ref_description="SGN-E305226 [cLEX-15-K17]">
      <seq>ctcctgtagccacacttcctgtaaaccctccggcccacatacctgagaaaacaaaatactttttggccaaggctattcattcttttgaagctgaatcagaaaaggagctaagcttgtctgtcggtgattatgttgtggttcgtaaggtgactcaatcaggttggtcagaaggagaatgccaaggcagggcaggttggtttccatctgagtacgtggagaaacgacaaagagtacctacttctaatggagcaacggaagtttactgaaaagatggtgattttttgttgctggtatttgtggaacagttgccagttcatccatttattcatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="58468" stop="60198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58768" g_stop="58838" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59054" g_stop="59128" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59711" g_stop="59898" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="334" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E305226" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58768" e_stop="58838"/>
          <exon e_start="59054" e_stop="59128"/>
          <exon e_start="59711" e_stop="59898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAGGTAACCGTCTGCTTTAACAACAGTTGTCTAAGTTGTTATAATCTTATCACAGAATGATTTATTTATTATACTATTTGAAAGAAACTTCTGAGGGAAAGCTGATTGACAATGAGGATATGTTGCTGGTGTGAGCTCTGAAGACACTCTTATCCGTGCAGTGTTACTGTTTATTAATGAGTTGAAGTGGTCTTAGTTTTTGTGTCTCTGTCACACAGGCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAGGTTGTTCTTTAATTCTGGCTCTTCCCTCTTATGATAATAAGTTATTGATTGAAGTTGATAAAACTCACATGTATATCTGCTGGAGCATTCTCCTTTTTCTAATCCTAACAAACCTTTTATGTAAGCCTTCTCAAATTTTCCAGTAAAGATGACTGCTGTTTGTACTACTCACACTAGTCTTCCTTCTAAAGGCTTATTTGATATATGTGCAACTTCCCACTTGAAACCTGCCCCTCTAACTGTCCTTCTCACTTCAAACCTGCCCCTCCTGTCGCCCTTCTCCCATCCGAAAAAGAAAAAAAATAAAGGAAGAATGAAAGTAAACAAAATAAAGAATACTATGTAAATGAAAAAGGAAAGGACACACCTGTAAATTTTCTTGTTCATTGACATTTTTATTCTACTTCTCAAAACTTGTGAAGGTAACAAAACTATGATCTATTCATAGATGTACATGATATGTTCAATGAAACACAGTAAAGTAGAGTTCAAAAGAAGAAACCACAGTTAATTCTTCTATCCTGTTACATCCACGTTTTTTTGAAGAGTGCCTCTCTTTTGCAATTTCATGTTATGTTTCAGGTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAG</genome_strand>
        <mrna_strand>CTCCTGTAGCCACACTTCCTGTAAACCCTCCGGCCCACATACCTGAGAAAACAAAATACTTTTTGGCCAAG.......................................................................................................................................................................................................................GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTGGTTCGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGTTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305625" ref_strand="+" ref_description="SGN-E305625 [cLEX-14-F17]">
      <seq>ctcctgtagccacacttcctgtaaaccctccggcccacatacctgagaaaacaaaatactttttggccaaggctattcattcttttgaagctgaatcagaaaaggagctaagcttgtctgtcggtgattatgttgtggttcgtaaggtgactcaatcaggttggtcagaaggagaatgccaaggcagggcaggttggtttccatctgagtacgtggagaaacgacaaagagtacctacttctaatggagcaacggaagtttactgaaaagatggtgattttttgttgctggtatttgtggaacagttgccagttcatccatttattcatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="58468" stop="60197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58768" g_stop="58838" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59054" g_stop="59128" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59711" g_stop="59897" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="333" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E305625" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58768" e_stop="58838"/>
          <exon e_start="59054" e_stop="59128"/>
          <exon e_start="59711" e_stop="59897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAGGTAACCGTCTGCTTTAACAACAGTTGTCTAAGTTGTTATAATCTTATCACAGAATGATTTATTTATTATACTATTTGAAAGAAACTTCTGAGGGAAAGCTGATTGACAATGAGGATATGTTGCTGGTGTGAGCTCTGAAGACACTCTTATCCGTGCAGTGTTACTGTTTATTAATGAGTTGAAGTGGTCTTAGTTTTTGTGTCTCTGTCACACAGGCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAGGTTGTTCTTTAATTCTGGCTCTTCCCTCTTATGATAATAAGTTATTGATTGAAGTTGATAAAACTCACATGTATATCTGCTGGAGCATTCTCCTTTTTCTAATCCTAACAAACCTTTTATGTAAGCCTTCTCAAATTTTCCAGTAAAGATGACTGCTGTTTGTACTACTCACACTAGTCTTCCTTCTAAAGGCTTATTTGATATATGTGCAACTTCCCACTTGAAACCTGCCCCTCTAACTGTCCTTCTCACTTCAAACCTGCCCCTCCTGTCGCCCTTCTCCCATCCGAAAAAGAAAAAAAATAAAGGAAGAATGAAAGTAAACAAAATAAAGAATACTATGTAAATGAAAAAGGAAAGGACACACCTGTAAATTTTCTTGTTCATTGACATTTTTATTCTACTTCTCAAAACTTGTGAAGGTAACAAAACTATGATCTATTCATAGATGTACATGATATGTTCAATGAAACACAGTAAAGTAGAGTTCAAAAGAAGAAACCACAGTTAATTCTTCTATCCTGTTACATCCACGTTTTTTTGAAGAGTGCCTCTCTTTTGCAATTTCATGTTATGTTTCAGGTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAA</genome_strand>
        <mrna_strand>CTCCTGTAGCCACACTTCCTGTAAACCCTCCGGCCCACATACCTGAGAAAACAAAATACTTTTTGGCCAAG.......................................................................................................................................................................................................................GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTGGTTCGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGTTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306468" ref_strand="+" ref_description="SGN-E306468 [cLEX-13-K9]">
      <seq>tttgccagtaccaagtgttcaacaattgaccaaaagctcaccggaaaatgtcccggcgcgttaccggagagatgatgatcaactacttcttgttcctccgatgatgaaatttgatcattataatatcccaatcatcaacatggaaagcttgcttcgtggcgatgaaatcgaattcaacaagcttgattctgcttgtagagaatggggattttttcaggtgataaatcatggagtgagtggtacactagtagagaaagtgaagaaggatactcaagatttcttcaatctcccactagaagaaaaggaaatgttgaagcaagtagatggtgatatagatggctatggacaagcttttgttgtttctgaggaccaaaaacttgattgggctgatatgtttttcttgacaaccctccctcctcaattcagaaaaaaacatatcttcccccacctccctcaaccattcagaggaacagtggaactatatgcagttgaactgaaaaaactggctttaaagatcattgattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="83171" stop="80500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82871" g_stop="82655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82654" i_stop="81741" i_length="914">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81740" g_stop="81493" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="465" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81492" i_stop="80863" i_length="630">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80862" g_stop="80800" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="528" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E306468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82871" e_stop="82655"/>
          <exon e_start="81740" e_stop="81493"/>
          <exon e_start="80862" e_stop="80800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAGGTTAATTTTTAATTCGAATATAAATAGTAATACTAGTTGGGTTTCTGCTATTAGTGGACCGGTAAATAATAATTCATTATTTTTATTGGAATTTGTGTAGTACTGCGTATTTTCAGTTTGGGGTATCGTAAAATCGTGGCATATTAACTAATTTTTGTATGAACCGATCAAATGATAAAAGTTCTCTTCAATCAAGCTAATTTTCCAAAATCATTAAGAAGAGCAAAGTTGGAATCAGTGTTTTCAAATTATATATTATTCAGATAAATTACCTGAATTTTATAGTAAATATATAATTAATTAATATATAAAAATAAACAGTTTAATAATGATAACATTGACAATTAACAATAAGGAAAAGGGTCACTTGTAGTACTAAATAGCAGTTAAATATGTTTCCCATTACGAGGAGATCAAGTTCACATTTTAATTTCAAAATAGGTTTGAACTATAGTAGATATATGAAATTATTTTGCTATTTTTTTATCGTTACAAAATTGAGATTATTAAATTATGAGAATTTATGATAATCCTGTAATTATATATTTTTAATAAGCTATTATCTAATTTTTAGTTATCATCTTCAATGATGAGAGCTAAAAATTTATATTAGATAAATTTAATGCCTCTTAATAAAGTTGGCTTTAGAGGCCATAAATATTGTTGAGCCACCCCTAGCGTATAACTTTACCATTTAAAATTAATTTGTGTTATAAGATATGATTATGGACAACATCGAATTAATGAAAATTTTATGTTATATATTTTTTTATCCATTTTTCACTAAACCAACTTATAGGGAAAACACATGATGAAAAGCAGAGAAAATTCTTAACTTTTCCATATGAATGTATAACTTTTTTTTTTGTGACTGATTCAATCAAAATATATATATGTGAGTATATTTTTTACAGGTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAGGTATTATTACGATCCCGATTAATTCAGATTCTCATTACGTAGACCTCATTTGAAGGTATTATCCCAAGGTTTAACCTCGAGACCACATATGTTTAAAGGTAGAGGGATCTCATCCATTCAATTGTAACCTTTAGTGGTCCTGTAATTTTGGCTTATTTGTTTTGTTATAGTTTGCCTTGACATAATAGTTAATGAATATGTCTTGTTATTGCTAACAATGTTCATTCTTTTTAAAAGGGAAAAGAGCCAAATATGCCCTAAACTATTTGAAAAAGTCTAGATATATCATTCGTTTAAAGTTTGGCTCACTCATACTCTTACCATCCAACTTTTGTCCCAAATATGTCCTTATGGGTGTTACTGGGTATGCTGGACATATCCAGCTCATTTTTTATTTCTTTAAATGTCACGTGAAATTATAATGTCATTTTGACCAGCATACCAACTAACGCGCATATTTGGGCCAAAAGTTAGACGGCAAGGGCAGGAGTCAGCCAAACTTTAAACGAAGTATATTTAGACCTTTTCGACTAGTTTAGGAATATATACTCAAACATGAGTGCCAGTTATTTTACTATATTGTCAGTATACATAAGTTAAATCCTGAGTTTTTTTGTTGTATTGAAACAGAGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCT</genome_strand>
        <mrna_strand>TTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317176" ref_strand="+" ref_description="SGN-E317176 [cTOA-28-G1]">
      <seq>aatatggaagaaaataaattggttaagctagggggatctttgccagtaccaagtgttcaacaattgaccaaaagctcaccggaaaatgtcccggcgcgttaccggagagatgatgatcaactacttcttgttcctccgatgatgaaatttgatcattataatatcccaatcatcaacatggaaagcttgcttcgtggcgatgaaatcgaattcaacaagcttgattctgcttgtagagaatggggattttttcaggtgataaatcatggagtgagtggtacactagtagagaaagtgaagaaggatactcaagatttcttcaatctcccactagaagaaaaggaaatgttgaagcaagtagatggtgatatagatggctatggacaagcttttgttgtttctgaggaccnaaacttgattgggctgatatgtttttcttgacaaccctccctcctcaattcagaaaaaaacatatcttcccccaccctcccctcancattcagaggaacagtggaactatatgcagttgaaactgaaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="83209" stop="80523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82909" g_stop="82655" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82654" i_stop="81741" i_length="914">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81740" g_stop="81493" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="503" r_length="248" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81492" i_stop="80863" i_length="630">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80862" g_stop="80823" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="543" r_length="40" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E317176" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82909" e_stop="82655"/>
          <exon e_start="81740" e_stop="81493"/>
          <exon e_start="80862" e_stop="80823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAGGTTAATTTTTAATTCGAATATAAATAGTAATACTAGTTGGGTTTCTGCTATTAGTGGACCGGTAAATAATAATTCATTATTTTTATTGGAATTTGTGTAGTACTGCGTATTTTCAGTTTGGGGTATCGTAAAATCGTGGCATATTAACTAATTTTTGTATGAACCGATCAAATGATAAAAGTTCTCTTCAATCAAGCTAATTTTCCAAAATCATTAAGAAGAGCAAAGTTGGAATCAGTGTTTTCAAATTATATATTATTCAGATAAATTACCTGAATTTTATAGTAAATATATAATTAATTAATATATAAAAATAAACAGTTTAATAATGATAACATTGACAATTAACAATAAGGAAAAGGGTCACTTGTAGTACTAAATAGCAGTTAAATATGTTTCCCATTACGAGGAGATCAAGTTCACATTTTAATTTCAAAATAGGTTTGAACTATAGTAGATATATGAAATTATTTTGCTATTTTTTTATCGTTACAAAATTGAGATTATTAAATTATGAGAATTTATGATAATCCTGTAATTATATATTTTTAATAAGCTATTATCTAATTTTTAGTTATCATCTTCAATGATGAGAGCTAAAAATTTATATTAGATAAATTTAATGCCTCTTAATAAAGTTGGCTTTAGAGGCCATAAATATTGTTGAGCCACCCCTAGCGTATAACTTTACCATTTAAAATTAATTTGTGTTATAAGATATGATTATGGACAACATCGAATTAATGAAAATTTTATGTTATATATTTTTTTATCCATTTTTCACTAAACCAACTTATAGGGAAAACACATGATGAAAAGCAGAGAAAATTCTTAACTTTTCCATATGAATGTATAACTTTTTTTTTTGTGACTGATTCAATCAAAATATATATATGTGAGTATATTTTTTACAGGTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCA-CCTCCCTCAACCATTCAGGTATTATTACGATCCCGATTAATTCAGATTCTCATTACGTAGACCTCATTTGAAGGTATTATCCCAAGGTTTAACCTCGAGACCACATATGTTTAAAGGTAGAGGGATCTCATCCATTCAATTGTAACCTTTAGTGGTCCTGTAATTTTGGCTTATTTGTTTTGTTATAGTTTGCCTTGACATAATAGTTAATGAATATGTCTTGTTATTGCTAACAATGTTCATTCTTTTTAAAAGGGAAAAGAGCCAAATATGCCCTAAACTATTTGAAAAAGTCTAGATATATCATTCGTTTAAAGTTTGGCTCACTCATACTCTTACCATCCAACTTTTGTCCCAAATATGTCCTTATGGGTGTTACTGGGTATGCTGGACATATCCAGCTCATTTTTTATTTCTTTAAATGTCACGTGAAATTATAATGTCATTTTGACCAGCATACCAACTAACGCGCATATTTGGGCCAAAAGTTAGACGGCAAGGGCAGGAGTCAGCCAAACTTTAAACGAAGTATATTTAGACCTTTTCGACTAGTTTAGGAATATATACTCAAACATGAGTGCCAGTTATTTTACTATATTGTCAGTATACATAAGTTAAATCCTGAGTTTTTTTGTTGTATTGAAACAGAGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTG</genome_strand>
        <mrna_strand>AATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACC-NAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCCTCCCCTCANCATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAGTGGAACTATATGCAGTTGAAACTGAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377834" ref_strand="+" ref_description="SGN-E377834 [TUS-21-J1](-)">
      <seq>tccccattgaaccactccctaatgccttcatagtcaatgttggagatgcttctgagattttctcaaatggtatatacaaaagcatagaacatagatcagtggtgagctcagaaaaagaaaggatttcagtagcaacatttcagagtccaagattggatggtatattaggtccatcaagtagccttgttacacctcaaaatccaccaaaattcaaaaaaattggagtcactcaattttataaaggatttttcacacgtgaacttgatgggaaatcatatgtggacaccatgagaatcaccaatgtagatgatctaaacaattagttagatatctcgatttgagtatatatctgaatttttataatgctgtaagatgttatattaagatgtcaagattaaaaatttatgactctttatatttttgaatgtgtaaaaaaattatatgatgattttggatgtctattgtattaagatttcaatagtataaattaatattattcatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="96706" stop="93922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96406" g_stop="96351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94676" g_stop="94218" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="515" r_length="459" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E377834" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96406" e_stop="96351"/>
          <exon e_start="94676" e_stop="94218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAGGTACTTCCTTCATCCTCTTCTCTCAATATTTATTGAGTAGTATGGTATTATTTTTACCGTAGTTTTAATTTATGTGGTGATATTTGACTACGATCTTTTGTCAAAGGGGAGATATAACAAGTAACAAAATGAAGAGAAAAAACATCTCATGACTAGCTAGTTGAATATTCCCATAAATTTCCTTGGTATTAGTGTTTCAGTAGTCCATACTTATTTAGGAGTCTGCATTAGCTATATCAATCGTACAATTTATTTAGGGAAAATGTAGAAGTACTTTTTTATCCTATGTTTGAAATCTAAAAGATATAATTATACTATACTAAGGTCATATTACTTTCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTCCGACTTATGTGACACTAGCTTGAAAAAAAAAATCAATTAGCGTTCATTGATTAAACCCGAAATTCAATCCGACTTTGACATAGAACCTAACTCCCGAGACCTGGTTTCAACTCTGACCTTGACTTAGGGACTAGAGTTGTAAGATTCGAATCCTGGCCTATAGAAAAAATCAAACAAAATCTTAGAGATAAGCAATAACTAGGCTAATATTGAGTTAAATTGAAGATCACTTTCAAAATGAGTTATTAGGGGCGTATAAAATTGAATCAAATCGTAAAAGGAGTCAAATCAGAAAAAAAATTGATTAGTAATTTGGTTTGACTTGATTTGGTGTTGGACAAAAAAAATCTGATTATATTTGAGTTGGTTTAGTTTCAACTTGAAAAAATCAAACTGAGATCAAATCAACCCGACATTTTATATATATTTTTAAAATTTTATTATACATAAAAATACTTACTTTGATATAATTTTTAAATATCTCTTATACTTTTTCATAGTTTTTATCTTTTAATGTATTTATTTCATGTTTGAAAGTTAGAATTTTTAATGATCCAATAAAAATTATAGTTCATACATGTTGGTAATTATAATAAAGTTTAAATAATTGATACTAATGCAAAAAAAAAATCAACTCAACACTAAGAATGACATAATATTGAATTATTTATTTTTTTAGTTTTACATAGGTTTAGACAATTAAAATGCATCTAATTTTATTTTCTTTTAGTATTTAATCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTAATTTTAAATTCTGATCAATTTCTATGACTTATTAATTTGCAATATAGTTTAACGCGATTTTATTATTATTTTTTTGTTAGATATTTTAGTGTCATTAATCATATCATATTTTGTGTTGTTTTCTTAAGAAATAACTTAGATAGTTACATTTTGATAGGACTAAAGAAATACTTGAAGTACAAGTAAAGTATATGGTTGTATGAACACTTCATCGAAAAAACCCGAAATTGAAAAACTCAAATTTTATTTGTTTAGTTTATAAATTCAAAAATCAAACAGAAGTAATTTAATTTGATATTGGAAAAGTCTGAATCAACCCGATCATATACATTCCTATGAATTATAATAAATCGATCTAAAATTAGCCCAATATAAAACTATCTTCTGCTCAATCCTTAAAACTCTTGGCGAGCCATCGTTTTTGTAGGCCATATTTGACAGCCTTACTCGTAGCCCCACTCTTATCTTCTTTTTTATTATATATGTACTATAAATGTTTTTTTTTTTTTTTTGGATCAGATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGACTAAAAATTTATGACTCTTTATATTTTTGAATATGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATACTATAAATTAATATTATTCATATGTAAAAAATTAT</genome_strand>
        <mrna_strand>TCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCAAATGGTATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGTAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTTTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGATTAAAAATTTATGACTCTTTATATTTTTGAATGTGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATAGTATAAATTAATATTATTCATATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238408" ref_strand="+" ref_description="SGN-E238408 [cLED-17-J21]">
      <seq>tcttttacttgaagacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttagagagacgattgaagagtacgcggatgaaataaagaagctaagcatgagagtattgaaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcgaagaaggaatgcaatcgatgagaatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctcattcagatgcaacaggccttacaatacttcttcaagttaatgaaactcaaggtcttcaaattaaaaaagatggaatttggatccccattgaaccactccctaatgccttcatagtcaatgttggagatgcttttgagattttctcaaatggaatatacaaaagcatagaacatagatcagtggtgagctcagaaaaagaaaggatttcagtagcaacatttcagagtccaagattggatggtatattaggtccatcaagtagccttgttacacctcaaaatccaccaaaattcaaaaaaattggagtcactcaattttataaaggatttttcacacgtgaacttgatgggaaatcatatgtggacaccatgagaatcaccaatgtagatgatctaaacaattagttagatatctcgatttgagtatatatctgaatttttataatgctgtaagatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="97126" stop="94055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96826" g_stop="96757" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96675" g_stop="96351" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="395" r_length="325" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94676" g_stop="94355" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="717" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E238408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96826" e_stop="96757"/>
          <exon e_start="96675" e_stop="96351"/>
          <exon e_start="94676" e_stop="94355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAGGTACTTCCTTCATCCTCTTCTCTCAATATTTATTGAGTAGTATGGTATTATTTTTACCGTAGTTTTAATTTATGTGGTGATATTTGACTACGATCTTTTGTCAAAGGGGAGATATAACAAGTAACAAAATGAAGAGAAAAAACATCTCATGACTAGCTAGTTGAATATTCCCATAAATTTCCTTGGTATTAGTGTTTCAGTAGTCCATACTTATTTAGGAGTCTGCATTAGCTATATCAATCGTACAATTTATTTAGGGAAAATGTAGAAGTACTTTTTTATCCTATGTTTGAAATCTAAAAGATATAATTATACTATACTAAGGTCATATTACTTTCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTCCGACTTATGTGACACTAGCTTGAAAAAAAAAATCAATTAGCGTTCATTGATTAAACCCGAAATTCAATCCGACTTTGACATAGAACCTAACTCCCGAGACCTGGTTTCAACTCTGACCTTGACTTAGGGACTAGAGTTGTAAGATTCGAATCCTGGCCTATAGAAAAAATCAAACAAAATCTTAGAGATAAGCAATAACTAGGCTAATATTGAGTTAAATTGAAGATCACTTTCAAAATGAGTTATTAGGGGCGTATAAAATTGAATCAAATCGTAAAAGGAGTCAAATCAGAAAAAAAATTGATTAGTAATTTGGTTTGACTTGATTTGGTGTTGGACAAAAAAAATCTGATTATATTTGAGTTGGTTTAGTTTCAACTTGAAAAAATCAAACTGAGATCAAATCAACCCGACATTTTATATATATTTTTAAAATTTTATTATACATAAAAATACTTACTTTGATATAATTTTTAAATATCTCTTATACTTTTTCATAGTTTTTATCTTTTAATGTATTTATTTCATGTTTGAAAGTTAGAATTTTTAATGATCCAATAAAAATTATAGTTCATACATGTTGGTAATTATAATAAAGTTTAAATAATTGATACTAATGCAAAAAAAAAATCAACTCAACACTAAGAATGACATAATATTGAATTATTTATTTTTTTAGTTTTACATAGGTTTAGACAATTAAAATGCATCTAATTTTATTTTCTTTTAGTATTTAATCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTAATTTTAAATTCTGATCAATTTCTATGACTTATTAATTTGCAATATAGTTTAACGCGATTTTATTATTATTTTTTTGTTAGATATTTTAGTGTCATTAATCATATCATATTTTGTGTTGTTTTCTTAAGAAATAACTTAGATAGTTACATTTTGATAGGACTAAAGAAATACTTGAAGTACAAGTAAAGTATATGGTTGTATGAACACTTCATCGAAAAAACCCGAAATTGAAAAACTCAAATTTTATTTGTTTAGTTTATAAATTCAAAAATCAAACAGAAGTAATTTAATTTGATATTGGAAAAGTCTGAATCAACCCGATCATATACATTCCTATGAATTATAATAAATCGATCTAAAATTAGCCCAATATAAAACTATCTTCTGCTCAATCCTTAAAACTCTTGGCGAGCCATCGTTTTTGTAGGCCATATTTGACAGCCTTACTCGTAGCCCCACTCTTATCTTCTTTTTTATTATATATGTACTATAAATGTTTTTTTTTTTTTTTTGGATCAGATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTA</genome_strand>
        <mrna_strand>TCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG.................................................................................AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGAAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCGAAGAAGGAATGCAATCGATGAGAATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGTAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTTTTATAATGCTGTAAGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745430" ref_strand="+" ref_description="SGN-E745430 [GI|47105648]">
      <seq>gaccatagaattaagcagttaaacaaatatgagagacatagaagtcaagtacatggaagttccttctgtacaggaactggccaagaagaaactcgtgtcgattccatcgcgatacgtacgcgatgatcaagaccgttcaattgcatcatcaatttataaagaagtcccagtaattgatatgcaacgattgatcaactttaatgatcatgactccatgaatcttgagcttaacaagttgcacttagcagctaaagattggggtttctttcagttgattaatcatggagttagttgttcagtagtggagaagatgaaagacgagactcaaaaattcttcgatctgccattagaagagaagaaaaagtttgaaaaatcttcaggagatacagatggatttggacagctattcgtcgtctctgatgaacaaaagcttgactgggctgatctcttttacttgaagacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttaggtacataccaaacgttgtttgcgccctttttaacgcttgaaaataagtaagagaatcgcttattaatgcgtataaatgtagagagacgattgaagagtacgcggatgaaataaagaagctaagcatgagagtattggaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcaaagaaggaatgcaatcgatgaggatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctcattcagatgcaacaggccttacaatacttcttcaagttaatgaaactcaaggtcttcaaattaaaaaagatggaatttggatccccattgaaccactccctaatgccttcatagtcaatgttggagatgcttttgagattttctcaaatggaatatacaaaagcatagaacatagatcagtggtgagctcagaaaaagaaaggatttcagtagcaacatttcagagtccaagattggatggtatattaggtccatcaagtagccttgttacacctcaaaatccaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="99461" stop="60173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99162" g_stop="98892" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97001" g_stop="96351" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="922" r_length="651" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94676" g_stop="94507" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1092" r_length="170" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E745430" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1092</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99162" e_stop="98892"/>
          <exon e_start="97001" e_stop="96351"/>
          <exon e_start="94676" e_stop="94507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAGGTACATATAGATCAATAATATACTAGCAAAGATATATCAAGTGACTTTTCTCATACAAAATATCAATTAAAAGAGCATATGTATTCTTTAGTTTAAGCTTTCTAAATAAAATTATCACATACTTTAATATGATATCAGTTTTTAAGATTGTTTGGTTCAAAACGGTAAAGCCCATTGGCCTTGAAGTAGTCCGTGGTTCAGCCAAAACGGACCATATATAGGTTGTATTTGCATATTTTTACTTTGTCTCGACTTTTATGATACAATTTTTTTCAGTGTCAAAAACACCTAAATCAATCTTTTCTTAGTTCTATACCTAAATTATTGAGAATATGAGTCTCACATTTAAGTTATTACTTAGTAGTTTGAGAAACACATTTTTCTCTTTTATTACACTCTTATATCATGGTGTATGTACGTCTACACCTACTCCTTTAACTTTACCTCATGTTATATTTATGTCCTTTTAACTTTGAGTGTGCATAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAGACACATACACCCTATGTGGCATCTTACATGGTAATTTACGTTCTACATGGTGTCTTGTGTGTATTGTACCATGTAAGATTAATGTGTCAATCTGTTCAACTTTATACAAGTTTAAGTGTCTATTTTTGCACAGCCCAAAGTTGGATCGTATACATGTTAAATGATGCCAAGTTAAAGGGCATATACATGTATTATGCCATAAAAATCATGGACAAAACATTCTATCTTGGCAAAAATTAAATAGATTATTAATATCAATTAAAATAATAGACAAAATTATATTTCACCTTAACAAAAAAATTTAATAAATTATAGTATTAGTTAAAGTTAAAAGTAAAGGCATTACTATATATCCAAAAAATTTATAAAATAAAGTATAAAATATTTTTCTTACTTTTACTCCAGACTCCACCACTTCCTCTCACCCCACCCCCTCCCCACCACAATTTTTTAGTTTTTTTAAAAGAAAAATAAAATTCCATTTGTAAAAGTCTTTTTGAAAATATCTTACTTCCTCTCCCCCTAACTCTCCAAATAATAATTTAGATATTATTTTATTTTTTTAAAAAAAAATTCTACCTCACTCCACCTAACACAATACTTTCAATTATTTCCTCATATTGTGTTATATATAATATTTTTCTAAAAATATATGTACATATCTAGCACAAAACTAAAAAAATATATCTAAAAAAGAAAAAAGAGAGTAGACGGTGTATGGTAGAATTTCTTTTTTAATAAAAAAATAAAAATAATATCAATCTTTTTTAGGAAGAAGTGAGGAAGGGGGTGAAGTTTGGAATTTTTTTAAAAAAAATTAAAAGAATAAAAGGGTGGGGTAAGAAAAAAATTCTAGATTTTATCTTTTTTTTTAAAAAAATTCTTCTGGGATAGTAATACTTTAATGTTTATCTTTCAATTAATATTAATGATTTACTTAAAAAAAAATTAAGACATATTTTATTTATGTGGCGAAGTTTTGCTGGTAAAACAGAAGGTAGGCATACTATATAAATGTGCTCTTTAACTTGGATTTATTTTACATGTATGTCCCTCCAAGTTTGGATATGTATAACTTAAACTTGTATAAAGTTGAACAAGTAAATATATAAGTCCTACATGAAACAATACACGTAGGATACCATGTAGAACAAAAATGACATGTAGGATGTCATGTTAGACCTACATGTCTATTTGTTCAATTTTATACTAATTTGAGCGTCTACTTTTATATATCCAAAGTTAAAGAATATAAATGTGATTTAAAACTAAGTTAAAATACATATATGCATAAAGTGTATTACACTCCCAATAGTTTAAACTCCATGCGCAATAGATAGTAATAACAAGTTCAACTACATGCTGCAGTTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAGGTACTTCCTTCATCCTCTTCTCTCAATATTTATTGAGTAGTATGGTATTATTTTTACCGTAGTTTTAATTTATGTGGTGATATTTGACTACGATCTTTTGTCAAAGGGGAGATATAACAAGTAACAAAATGAAGAGAAAAAACATCTCATGACTAGCTAGTTGAATATTCCCATAAATTTCCTTGGTATTAGTGTTTCAGTAGTCCATACTTATTTAGGAGTCTGCATTAGCTATATCAATCGTACAATTTATTTAGGGAAAATGTAGAAGTACTTTTTTATCCTATGTTTGAAATCTAAAAGATATAATTATACTATACTAAGGTCATATTACTTTCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTCCGACTTATGTGACACTAGCTTGAAAAAAAAAATCAATTAGCGTTCATTGATTAAACCCGAAATTCAATCCGACTTTGACATAGAACCTAACTCCCGAGACCTGGTTTCAACTCTGACCTTGACTTAGGGACTAGAGTTGTAAGATTCGAATCCTGGCCTATAGAAAAAATCAAACAAAATCTTAGAGATAAGCAATAACTAGGCTAATATTGAGTTAAATTGAAGATCACTTTCAAAATGAGTTATTAGGGGCGTATAAAATTGAATCAAATCGTAAAAGGAGTCAAATCAGAAAAAAAATTGATTAGTAATTTGGTTTGACTTGATTTGGTGTTGGACAAAAAAAATCTGATTATATTTGAGTTGGTTTAGTTTCAACTTGAAAAAATCAAACTGAGATCAAATCAACCCGACATTTTATATATATTTTTAAAATTTTATTATACATAAAAATACTTACTTTGATATAATTTTTAAATATCTCTTATACTTTTTCATAGTTTTTATCTTTTAATGTATTTATTTCATGTTTGAAAGTTAGAATTTTTAATGATCCAATAAAAATTATAGTTCATACATGTTGGTAATTATAATAAAGTTTAAATAATTGATACTAATGCAAAAAAAAAATCAACTCAACACTAAGAATGACATAATATTGAATTATTTATTTTTTTAGTTTTACATAGGTTTAGACAATTAAAATGCATCTAATTTTATTTTCTTTTAGTATTTAATCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTAATTTTAAATTCTGATCAATTTCTATGACTTATTAATTTGCAATATAGTTTAACGCGATTTTATTATTATTTTTTTGTTAGATATTTTAGTGTCATTAATCATATCATATTTTGTGTTGTTTTCTTAAGAAATAACTTAGATAGTTACATTTTGATAGGACTAAAGAAATACTTGAAGTACAAGTAAAGTATATGGTTGTATGAACACTTCATCGAAAAAACCCGAAATTGAAAAACTCAAATTTTATTTGTTTAGTTTATAAATTCAAAAATCAAACAGAAGTAATTTAATTTGATATTGGAAAAGTCTGAATCAACCCGATCATATACATTCCTATGAATTATAATAAATCGATCTAAAATTAGCCCAATATAAAACTATCTTCTGCTCAATCCTTAAAACTCTTGGCGAGCCATCGTTTTTGTAGGCCATATTTGACAGCCTTACTCGTAGCCCCACTCTTATCTTCTTTTTTATTATATATGTACTATAAATGTTTTTTTTTTTTTTTTGGATCAGATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGT</genome_strand>
        <mrna_strand>GACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236372" ref_strand="+" ref_description="SGN-E236372 [cLED-13-C20]">
      <seq>ttgagcttaacaagttgcgcttagcagctaaagattggggtttctttcagttgattaatcatggagttagttgttcagtagtggagaagatgaaagacgagactcaaaaattcttcgatctgccattagaagagaagaaaaagtttgaaaaatcttcaggagatacagatggatttggacagctattcgtcgtctctgatgaacaaaagcttgactgggctgatctcttttacttgaagacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttagagagacgattgaagagtacgcggatgaaataaagaagctaagcatgagagtattgaaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcgaagaaggaatgcaatcgatgagaatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctcattcagatgcaacaggccttacaatacttcttcaagttaatgaaactcaaggtcttcaaattaaaaaagatggaatttggatccccattgaaccactccctaatgccttcatagtccatgttggagatgcttttgagattttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="99241" stop="96044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98941" g_stop="98892" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97001" g_stop="96757" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="295" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96675" g_stop="96351" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="620" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E236372" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98941" e_stop="98892"/>
          <exon e_start="97001" e_stop="96757"/>
          <exon e_start="96675" e_stop="96351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAGGTACATATAGATCAATAATATACTAGCAAAGATATATCAAGTGACTTTTCTCATACAAAATATCAATTAAAAGAGCATATGTATTCTTTAGTTTAAGCTTTCTAAATAAAATTATCACATACTTTAATATGATATCAGTTTTTAAGATTGTTTGGTTCAAAACGGTAAAGCCCATTGGCCTTGAAGTAGTCCGTGGTTCAGCCAAAACGGACCATATATAGGTTGTATTTGCATATTTTTACTTTGTCTCGACTTTTATGATACAATTTTTTTCAGTGTCAAAAACACCTAAATCAATCTTTTCTTAGTTCTATACCTAAATTATTGAGAATATGAGTCTCACATTTAAGTTATTACTTAGTAGTTTGAGAAACACATTTTTCTCTTTTATTACACTCTTATATCATGGTGTATGTACGTCTACACCTACTCCTTTAACTTTACCTCATGTTATATTTATGTCCTTTTAACTTTGAGTGTGCATAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAGACACATACACCCTATGTGGCATCTTACATGGTAATTTACGTTCTACATGGTGTCTTGTGTGTATTGTACCATGTAAGATTAATGTGTCAATCTGTTCAACTTTATACAAGTTTAAGTGTCTATTTTTGCACAGCCCAAAGTTGGATCGTATACATGTTAAATGATGCCAAGTTAAAGGGCATATACATGTATTATGCCATAAAAATCATGGACAAAACATTCTATCTTGGCAAAAATTAAATAGATTATTAATATCAATTAAAATAATAGACAAAATTATATTTCACCTTAACAAAAAAATTTAATAAATTATAGTATTAGTTAAAGTTAAAAGTAAAGGCATTACTATATATCCAAAAAATTTATAAAATAAAGTATAAAATATTTTTCTTACTTTTACTCCAGACTCCACCACTTCCTCTCACCCCACCCCCTCCCCACCACAATTTTTTAGTTTTTTTAAAAGAAAAATAAAATTCCATTTGTAAAAGTCTTTTTGAAAATATCTTACTTCCTCTCCCCCTAACTCTCCAAATAATAATTTAGATATTATTTTATTTTTTTAAAAAAAAATTCTACCTCACTCCACCTAACACAATACTTTCAATTATTTCCTCATATTGTGTTATATATAATATTTTTCTAAAAATATATGTACATATCTAGCACAAAACTAAAAAAATATATCTAAAAAAGAAAAAAGAGAGTAGACGGTGTATGGTAGAATTTCTTTTTTAATAAAAAAATAAAAATAATATCAATCTTTTTTAGGAAGAAGTGAGGAAGGGGGTGAAGTTTGGAATTTTTTTAAAAAAAATTAAAAGAATAAAAGGGTGGGGTAAGAAAAAAATTCTAGATTTTATCTTTTTTTTTAAAAAAATTCTTCTGGGATAGTAATACTTTAATGTTTATCTTTCAATTAATATTAATGATTTACTTAAAAAAAAATTAAGACATATTTTATTTATGTGGCGAAGTTTTGCTGGTAAAACAGAAGGTAGGCATACTATATAAATGTGCTCTTTAACTTGGATTTATTTTACATGTATGTCCCTCCAAGTTTGGATATGTATAACTTAAACTTGTATAAAGTTGAACAAGTAAATATATAAGTCCTACATGAAACAATACACGTAGGATACCATGTAGAACAAAAATGACATGTAGGATGTCATGTTAGACCTACATGTCTATTTGTTCAATTTTATACTAATTTGAGCGTCTACTTTTATATATCCAAAGTTAAAGAATATAAATGTGATTTAAAACTAAGTTAAAATACATATATGCATAAAGTGTATTACACTCCCAATAGTTTAAACTCCATGCGCAATAGATAGTAATAACAAGTTCAACTACATGCTGCAGTTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG</genome_strand>
        <mrna_strand>TTGAGCTTAACAAGTTGCGCTTAGCAGCTAAAGATTGGGGTTTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG.................................................................................AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGAAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCGAAGAAGGAATGCAATCGATGAGAATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCCATGTTGGAGATGCTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377835" ref_strand="+" ref_description="SGN-E377835 [TUS-21-J1]">
      <seq>ttgagcttaacatgttgcgcttagcagctaaagattggggtttctttcagttgattaatcatggagttagttgttcagtagtggagaagatgaaagacgagactcaaaaattcttcgatctgccattagaagagaagaaaaagtttgaaaaatcttcaggagatacagatggatttggacagctattcatcatctctgatgaacaaaagcttgactgggctgatctcttttacttgaatacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttagagagacgattgaagagtacgcggatgaaataaagaaactaagcatgagagtattgaaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcgaagaaggaatgcaatcgatgagaatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctgattcaaatgcaacaggcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="99241" stop="96167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98941" g_stop="98892" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97001" g_stop="96757" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="295" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96675" g_stop="96467" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="504" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E377835" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98941" e_stop="98892"/>
          <exon e_start="97001" e_stop="96757"/>
          <exon e_start="96675" e_stop="96467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAGGTACATATAGATCAATAATATACTAGCAAAGATATATCAAGTGACTTTTCTCATACAAAATATCAATTAAAAGAGCATATGTATTCTTTAGTTTAAGCTTTCTAAATAAAATTATCACATACTTTAATATGATATCAGTTTTTAAGATTGTTTGGTTCAAAACGGTAAAGCCCATTGGCCTTGAAGTAGTCCGTGGTTCAGCCAAAACGGACCATATATAGGTTGTATTTGCATATTTTTACTTTGTCTCGACTTTTATGATACAATTTTTTTCAGTGTCAAAAACACCTAAATCAATCTTTTCTTAGTTCTATACCTAAATTATTGAGAATATGAGTCTCACATTTAAGTTATTACTTAGTAGTTTGAGAAACACATTTTTCTCTTTTATTACACTCTTATATCATGGTGTATGTACGTCTACACCTACTCCTTTAACTTTACCTCATGTTATATTTATGTCCTTTTAACTTTGAGTGTGCATAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAGACACATACACCCTATGTGGCATCTTACATGGTAATTTACGTTCTACATGGTGTCTTGTGTGTATTGTACCATGTAAGATTAATGTGTCAATCTGTTCAACTTTATACAAGTTTAAGTGTCTATTTTTGCACAGCCCAAAGTTGGATCGTATACATGTTAAATGATGCCAAGTTAAAGGGCATATACATGTATTATGCCATAAAAATCATGGACAAAACATTCTATCTTGGCAAAAATTAAATAGATTATTAATATCAATTAAAATAATAGACAAAATTATATTTCACCTTAACAAAAAAATTTAATAAATTATAGTATTAGTTAAAGTTAAAAGTAAAGGCATTACTATATATCCAAAAAATTTATAAAATAAAGTATAAAATATTTTTCTTACTTTTACTCCAGACTCCACCACTTCCTCTCACCCCACCCCCTCCCCACCACAATTTTTTAGTTTTTTTAAAAGAAAAATAAAATTCCATTTGTAAAAGTCTTTTTGAAAATATCTTACTTCCTCTCCCCCTAACTCTCCAAATAATAATTTAGATATTATTTTATTTTTTTAAAAAAAAATTCTACCTCACTCCACCTAACACAATACTTTCAATTATTTCCTCATATTGTGTTATATATAATATTTTTCTAAAAATATATGTACATATCTAGCACAAAACTAAAAAAATATATCTAAAAAAGAAAAAAGAGAGTAGACGGTGTATGGTAGAATTTCTTTTTTAATAAAAAAATAAAAATAATATCAATCTTTTTTAGGAAGAAGTGAGGAAGGGGGTGAAGTTTGGAATTTTTTTAAAAAAAATTAAAAGAATAAAAGGGTGGGGTAAGAAAAAAATTCTAGATTTTATCTTTTTTTTTAAAAAAATTCTTCTGGGATAGTAATACTTTAATGTTTATCTTTCAATTAATATTAATGATTTACTTAAAAAAAAATTAAGACATATTTTATTTATGTGGCGAAGTTTTGCTGGTAAAACAGAAGGTAGGCATACTATATAAATGTGCTCTTTAACTTGGATTTATTTTACATGTATGTCCCTCCAAGTTTGGATATGTATAACTTAAACTTGTATAAAGTTGAACAAGTAAATATATAAGTCCTACATGAAACAATACACGTAGGATACCATGTAGAACAAAAATGACATGTAGGATGTCATGTTAGACCTACATGTCTATTTGTTCAATTTTATACTAATTTGAGCGTCTACTTTTATATATCCAAAGTTAAAGAATATAAATGTGATTTAAAACTAAGTTAAAATACATATATGCATAAAGTGTATTACACTCCCAATAGTTTAAACTCCATGCGCAATAGATAGTAATAACAAGTTCAACTACATGCTGCAGTTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTA</genome_strand>
        <mrna_strand>TTGAGCTTAACATGTTGCGCTTAGCAGCTAAAGATTGGGGTTTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCATCATCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAATACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG.................................................................................AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAACTAAGCATGAGAGTATTGAAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCGAAGAAGGAATGCAATCGATGAGAATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTGATTCAAATGCAACAGGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549322" ref_strand="+" ref_description="SGN-E549322 [TUS-69-F15](-)">
      <seq>aggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgagaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataaattattatcctccttgtcctcaaccagagcgcgtaatggggttatgccctcatacggatgctattggtctagctatattacttcaggttaatgaaactgagggtcttcaaattaagaaagatggagcttggattccggttccatattttcctgatgcctttgttgtcaacattggagacattttagagattgtgacaaatggaatttacaagagcattgaacatcgagccatcgttaatgaggataaggaggggatctctattgctacatttttaagccccaaattggacggagatttaggtccagcaccaagtttcctcactcctggatcccctgcaaaatataggaggattggagtggccgattacttcaaaggatttttttctcgagagctccatggaaaatcatacctacatactttaaaaattggaaatggagatcatcggagcaattgatcaatgttgcattttattccgctcgtataataattattgtagcaatggtggtctgtttagttgtattagctatctcatgtcatgtaaaaggttgcagaagaacagttattgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="113994" stop="60166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113694" g_stop="113386" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113323" g_stop="112970" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="675" r_length="365" r_score="0.864"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112969" i_stop="112730" i_length="240">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.552" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112729" g_stop="112721" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="684" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112720" i_stop="111995" i_length="726">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.760" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111994" g_stop="111954" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="725" r_length="41" r_score="0.683"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E549322" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113694" e_stop="113386"/>
          <exon e_start="113323" e_stop="112970"/>
          <exon e_start="112729" e_stop="112721"/>
          <exon e_start="111994" e_stop="111954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAG-GTGAGATATATGTGTGTTTAGTATGATACAAGTCAATTTGTGGGTAAAGCTCTGTTAATTTTGTTTTTTTTGCAGATTGTGACAAATGGAATTTACA-AGAG-CATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAG--T-CTC-CT-C---A-CTCCT-CAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTTAAAACCATTAAGAAATGCATAAACTTCCAATCCTATATTTGAATTGGGAAAGGGTAAAAATATGTTGCTGAATTATTGAGAACAGAGCAATTATGCTCTATTATCTGCTCTTTGACACAAAAAATGCCATAGCCATCAAGGTCCGCCACCCTTTGGATACTGATTTGACAGAACTCAATAACTTTATCTCAAATTTTATATTTGTGTTAAAAAATTCATTTGATAGGTAAAAACAGTATTCTTAACCATGTAAACACAAACGAATTATGAAAATTGTAATTAACAGTATCACCTCATATTCAAAATTAAAAAAAAATCGTTTTAATTTATTTTTGTTTAATTCGAAATGTTAATTAGTTGGGTCTTTAATTAATTAGGGATGGTAAAATTGATCTAGGCCTGCCCAACTCTAGTGGCCAATCTAATTCCTAGAATTTGTACTTGAAGTTAAGTAATATTTGAGATTTGACCTCTAATTTTGTGTTCACTAAATTAAAGTCACTCTATTAGACACTAACCAAAAAAAATTTAGGAAAAACTACAAAATATGATAAATACTAATATACATTTAAAATAAATATCTACAATCCATTTCTTTTTTTATGTTATATGGATATAATTACACAATAAATAGAAAAGTTAATTATATATAAAAATAATTAGAAAAGTAATTGATATTAAATAGGAAAGTTATTGTTACACACCTAATTTATTATCTCTAAGCATGTTGTGTGTGATTGGTTCCCGTGTTTACCCTCACTAATACTTTCTCTTTCATCAAATTTCTTTCAATTTAAGATCTTTTTGATGATTTTAGGAACAATTTTGTAATTTGAATTCATCATATATTACTTGATTGATTTTCTCCTCGTCTTTGTGTAGATCATAGTTTTATACATATATGTTGCATCTATTTTTATAGGCTTTCAATTGACTTGTTTCTGTATTACAATGACTATAGTAATAAAAAAAAGTAGTACAAGAAGAACACGAACAAAAAAA</genome_strand>
        <mrna_strand>AGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAGAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCTCATACGGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACTGAGGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATTTTCCTGATGCCTTTGTTGTCAACATTGGAGACATTTTAGAGATTGTGACAAATGG..............................................................AAT-TTACAAGAGCATTGAACATCGAGCCATCGTTAATGAGGATAAGGAGGGGATCTCTATTGCTACATTTTTAAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTTTCCTCACTCCTGGATCCCCTGCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTTTAAAAATTGGAAATGGAGATCATCGGAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATAATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATTAGCTATCTCATGTCATGTAAAAGGTTGCAGAAGAACAGTTATTGC................................................................................................................................................................................................................................................TTAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689869" ref_strand="+" ref_description="SGN-E689869 [LH_Ea02A11]">
      <seq>cgtggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgaaaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataaattattaccctccttgtcctcaaccagaccgtgtaatggggttatgccctcatacggatgctattggtctagctatattacttcaggttaatgaaactgagggtcttcaaattaagaaagatggagcttggattccggttccatatcttcctgatgcctttgttgtcaacattggagacattctagagattgtgacaaatggaatttacaagagcattgaacatcgagccatcgttaatgaggataaggagaggatctctattgctacattttttagccccaaattggacggagatttaggtccagcaccaagtctcctcactcctcgatcccctgcaaaatataggaggattggagtggccgattacttcaaaggatttttttctcgagagctccatggaaaatcatacctacatactctaaaaactggaaatggagatcatcggagcaattgatcaatgttgcattttattccgcttgtttaataattattgtagcaatggtggtctgtttagttgtatgagctatctcatgtcatgtaaaaggttgcagaagaacagttattgcttatatttatattcaaaaccattaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114018" stop="112641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113720" g_stop="113386" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113323" g_stop="112933" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="738" r_length="402" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E689869" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113720" e_stop="113386"/>
          <exon e_start="113323" e_stop="112933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAG-GTGAGATATATGTGTGTTTAGTATGATACAAGTCAATTTGTGGGTAAAGCTCTGTTAATTTTGTTTTTTTTGCAGATTGTGACAAATGGAATTTACA-AGAG-CATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCA-----C--T--CCT-CAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTTAAAACCATTAAGAAATGCATAAA</genome_strand>
        <mrna_strand>CGTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTACCCTCCTTGTCCTCAACCAGACCGTGTAATGGGGTTATGCCCTCATACGGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACTGAGGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGACATTCTAGAGATTGTGACAAATGG..............................................................AAT-TTACAAGAGCATTGAACATCGAGCCATCGTTAATGAGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCACTCCTCGATCCCCTGCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAACTGGAAATGGAGATCATCGGAGCAATTGATCAATGTTGCATTTTATTCCGCTTGTTTAATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTCATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTCAAAACCATTAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690163" ref_strand="+" ref_description="SGN-E690163 [LH_Ea02M17]">
      <seq>cgttacaatataattttatcgaccacacacaatggtctttcaatcctagataacgattttgctagcaaaaaagaaacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggcgttccgtcgcgatatattcgtgttaacgatgacgaaaatcaattgtgtaattcttccatattattgcctcatgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagaagaaatttgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagctagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcccgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgaaaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataaattattaccctccttgtcctcaaccagaccgtgtaatggggttatgccctcatacggatgctattggtctagctatattacttcaggttaatgaaactgagggtcttcaaattaagaaagatggagcttggattccgggttccatatcttccctgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114774" stop="113129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114477" g_stop="114127" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="598" r_length="248" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113429" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="898" r_length="300" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E690163" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114477" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCC-GGTTCCATATCTT-CCTGATGCC</genome_strand>
        <mrna_strand>CGTTACAATATAATTTTATCGACCACACACAATGGTCTTTCAATCCTAGATAACGATTTTGCT-AGCAAAAAAGAA-ACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGCGTTCCGTCGCGATATATTCGTGTTAACGATGACGAAAATCAATTGTGTAATTCTTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGAAGAAATTTGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGCTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCCGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTACCCTCCTTGTCCTCAACCAGACCGTGTAATGGGGTTATGCCCTCATACGGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACTGAGGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGGTTCCATATCTTCCCTGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333231" ref_strand="+" ref_description="SGN-E333231 [cTOD-20-F5]">
      <seq>tgaaatcggaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaagaaggagatctcgaaggatacgggcaagcatttgttgtatctgaagagcaaaagttagattgggctgatatactttacatgatcactctccctactcatttgcgaaaacctcacttgtttccaaagcttcctgcctcgttcagggatgcattggaacaatactcaagagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgaaaacagaggatatgaatgtactatttgaacaagacgggacacaaatgatgagaataaattattatcctccttgtcctcaaccagagcgcgtaatggggttatgccctcatactgatgctattggtctagctatattacttcaggttaatgaaacggaaggtcttncaattaagaaagatggagcttggattccggttccatatcttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114291" stop="113131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113991" g_stop="113784" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113726" g_stop="113431" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="504" r_length="296" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E333231" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113991" e_stop="113784"/>
          <exon e_start="113726" e_stop="113431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATG</genome_strand>
        <mrna_strand>TGAAATCGGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAAGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGCAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAG.........................................................GGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTACTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCTCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTNCAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331048" ref_strand="+" ref_description="SGN-E331048 [cTOD-6-O7]">
      <seq>agatattgatgatgattcggaactcgtgaggcttcatctcgcttgcaaagaatggggattttttcagctggtgaatcatggagtgaattcctcattgatgaagaaagtgaaatcggaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaagaaggagatctcgaaggatacgggcaagcatttgttgtatctgaagagcaaaagttagattgggctgatatactttacatgatcactctccctactcatttgcgaaaacctcacttgtttccaaagcttcctgcctcgttcagggatgcattggaacaatactcaagagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgaaaacagaggatatgaatgtactatttgaacaagacgggacacaaatgatgagaataaattattatcctccttgtcctcaaccagagcgcgtaatggggttatgccctcatactgatgctattggtctagctatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114334" stop="113206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114164" g_stop="114127" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="67" r_length="39" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="315" r_length="248" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113506" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="536" r_length="221" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E331048" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114164" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTAC</genome_strand>
        <mrna_strand>AGGCTTCATCTCGCTTGCAAAGAATGGGGATTTTTTCAG...............................................................................................CTGGTGAATCATGGAGTGAATTCCTCATTGATGAAGAAAGTGAAATCGGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAAGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGCAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAG.........................................................GGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTACTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCTCATACTGATGCTATTGGTCTAGCTATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546098" ref_strand="+" ref_description="SGN-E546098 [TUS-69-E15]">
      <seq>gcaaagtaaaataaaattttatcgaccacacacaataatctttcaatcctagataacgattttgctagaaaaaaaaaatacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagttagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcctgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgagaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataattattatcctccttgtcctcaacagagcgcgtaatggggttattgcctcatacggatgctattggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114780" stop="113216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114480" g_stop="114127" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="602" r_length="248" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113516" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="811" r_length="209" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E546098" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114480" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTA</genome_strand>
        <mrna_strand>GCAAAGTAAAATAAAATTTTATCGACCACACACAATAATCTTTCAATCCTAGATAACGATTTTGCT-AGAAAAAAAAAATACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGTTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCTGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAGAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAAT-AATTATTATCCTCCTTGTCCTCAA-CAGAGCGCGTAATGGGGTTATTGCCTCATACGGATGCTATTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546100" ref_strand="+" ref_description="SGN-E546100 [TUS-69-E16]">
      <seq>gcaaagtaaaataaaattttatcgaccacacacaataatctttcaatcctagataacgattttgctagaaaaaaaaaatacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagttagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcctgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttanggatgagaacagaggatatgaatgtattattttgaacagacgggacancaatgatgagaataaatattatcctccttgtcctcaccagagcgcgtaatggggttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114780" stop="113239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114480" g_stop="114127" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="602" r_length="248" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113539" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="788" r_length="186" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E546100" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114480" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCC</genome_strand>
        <mrna_strand>GCAAAGTAAAATAAAATTTTATCGACCACACACAATAATCTTTCAATCCTAGATAACGATTTTGCT-AGAAAAAAAAAATACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGTTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCTGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTANGGATGAGAACAGAGGATATGAATGTATTATTTTGAACAGACGGGACANCAATGATGAGAATAAA-TATTATCCTCCTTGTCCTC-ACCAGAGCGCGTAATGGGGTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692332" ref_strand="+" ref_description="SGN-E692332 [LH_Ea08H02]">
      <seq>gtacaatataattttatcgaccacacacaatggtctttcaatcctagataacgattttgctagcaaaaaagaaacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggcgttccgtcgcgatatattcgtgttaacgatgacgaaaatcaattgtgtaattcttccatattattgcctcatgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagaagaaatttgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagctagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcccgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgaaaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataaattattaccctccttgtcctcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114775" stop="113262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114475" g_stop="114127" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="596" r_length="248" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113562" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="761" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E692332" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114475" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACC</genome_strand>
        <mrna_strand>GTACAATATAATTTTATCGACCACACACAATGGTCTTTCAATCCTAGATAACGATTTTGCT-AGCAAAAAAGAA-ACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGCGTTCCGTCGCGATATATTCGTGTTAACGATGACGAAAATCAATTGTGTAATTCTTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGAAGAAATTTGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGCTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCCGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTACCCTCCTTGTCCTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546105" ref_strand="+" ref_description="SGN-E546105 [TUS-69-E19]">
      <seq>gcaaagtaaaataaaattttatcgaccacacacaataatctttcaatcctagataacgattttgctagaaaaaaaaaaacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagttagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcctgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgagaacagaggatatgaatgttttatttgaacaagacgggacacaaatgatgagaataaattattatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114780" stop="113275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114480" g_stop="114127" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="601" r_length="248" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113575" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="753" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E546105" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114480" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTC</genome_strand>
        <mrna_strand>GCAAAGTAAAATAAAATTTTATCGACCACACACAATAATCTTTCAATCCTAGATAACGATTTTGCT-AGAAAAAAAAAA-ACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGTTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCTGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAGAACAGAGGATATGAATGTTTTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355767" ref_strand="+" ref_description="SGN-E355767 [cLHT-18-J17]">
      <seq>caaagtaaaataaaattttatcgaccacacacaataatctttcaatcctagataacgattttgctagaaaaaaaaaatacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcacagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagttagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114779" stop="113520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114479" g_stop="114127" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113820" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="565" r_length="212" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E355767" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114479" e_stop="114127"/>
          <exon e_start="114031" e_stop="113820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAA</genome_strand>
        <mrna_strand>CAAAGTAAAATAAAATTTTATCGACCACACACAATAATCTTTCAATCCTAGATAACGATTTTGCT-AGAAAAAAAAAATACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCACAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGTTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359159" ref_strand="+" ref_description="SGN-E359159 [cLHT-11-I13]">
      <seq>taaaattttatcgaccacaccacaataatctttcaatcctagataacgattttgctagaaaaaaaaaataccatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagacgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114769" stop="113637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114469" g_stop="114127" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113937" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="440" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E359159" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114469" e_stop="114127"/>
          <exon e_start="114031" e_stop="113937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTTATCGACTACAC-ACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATT</genome_strand>
        <mrna_strand>TAAAATTTTATCGACCACACCACAATAATCTTTCAATCCTAGATAACGATTTTGCTAGAAAAAAAAAATACCATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546564" ref_strand="+" ref_description="SGN-E546564 [TUS-69-P22]">
      <seq>gtccgatgaggctgtgtgcaggtcctaattcggattcaaggttcatgtaatagaatgtcgcaacagagagcctctcttcatttgagtttacaattgctctgtgctcaatactcctatacacaccattgctcaatatctgccaagtcaaatgtatcacatttacgcgcataatattttcagcagtagtagaacatttttacctccatcatgtctccaatattcacaatcaaagcatttgggaggggctttatgggcacccaaatatcatcttttcggacttggagaccttcagtttcgttcagctggaaaaggatggtgaggacaccaggatcagaatgagtgcttaagccaattaccctgtttggttcagggcaaggcggataataattcatcctcattgactgcataccatcactgaatagatctctcgtttcctcttcgtccatccttaaagcctttgacaattgacatacaataatcattgctaggctcttaattcctttgcagtatgcttccaagacgtccctacatttcaaaacatattaattaaaagatgaggagagcaggacatagttataaggagataggcacctgagattcgagggcaatttctgaaacaagtcaactttgcggatataaggaggaagagtcattatgccaaacatatcactccaatcaagcttctgctcctccgatacaacgaatgcattcccaaaaccttcaaagctgtcttcctgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="116111" stop="117461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116411" g_stop="117161" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E546564" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116411" e_stop="117161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTTTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTTAAATATATCACATTTACGCGCATAATATTTTCAGGCGGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGTAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTGCCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCATTTCCTCTTCGTCCATCCTTAAAGCCTTTGTCAATTGGCATACGATGATCCTTGCTAGGCTCTTAATTTCTTTGCAGTAAGCTTCCAAGACGTCCCTACATTTCAATACACACAAACATATTAATTAAAAGATGAGGAGAGCGGGATATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCCACTTTGCGGATACGAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCCAAGCTGTCTTCCTGTTGCC</genome_strand>
        <mrna_strand>GTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTCTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTCAAATGTATCACATTTACGCGCATAATATTTTCA-GCAGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGGAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTACCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCGTTTCCTCTTCGTCCATCCTTAAAGCCTTTGACAATTGACATACAATAATCATTGCTAGGCTCTTAATTCCTTTGCAGTATGCTTCCAAGACGTCCCTACA-TT---T---CA-AAACATATTAATTAAAAGATGAGGAGAGCAGGACATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCAACTTTGCGGATATAAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCAAAGCTGTCTTCCTGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359331" ref_strand="+" ref_description="SGN-E359331 [cLHT-31-J17]">
      <seq>gctgtgtgcacgtcctaattgggattcaaggttcatgtaatagaatgtcgcaacagagagcctctcttcatttgagtttacaattgctctgtgctcaatactcctatacacaccattgctcaatatctgccaagtcaaatgtatcacatttacgcgcataatattttcagcagtagtagaacatttttacctccatcatgtctccaatattcacaatcaaagcatttgggaggggctttatgggcacccaaatatcatcttttcggacttggagaccttcagtttcgttcagctggaaaaggatggtgaggacaccaggatcagaatgagtgcttaagccaattaccctgtttggttcaaggcaaggcggataataattcatcctcattgactgcataccatcactgaatagatctctcgtttcctcttcgtccatccttaaagcctttgacaattgacatacaataatcattgctaggctcttaattcctttgcagtatgcttccaagacgtccctacatttcaaaacatattaattaaaagatgaggagagcaggacatagttataaggagataagcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="116121" stop="117313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116421" g_stop="117013" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-E359331" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116421" e_stop="117013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTTTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTTAAATATATCACATTTACGCGCATAATATTTTCAGGCGGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGTAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTGCCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCATTTCCTCTTCGTCCATCCTTAAAGCCTTTGTCAATTGGCATACGATGATCCTTGCTAGGCTCTTAATTTCTTTGCAGTAAGCTTCCAAGACGTCCCTACATTTCAATACACACAAACATATTAATTAAAAGATGAGGAGAGCGGGATATAGTTATAAGGAGATAGGCACCTG</genome_strand>
        <mrna_strand>GCTGTGTGCACGTCCTAATTGGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTCTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTCAAATGTATCACATTTACGCGCATAATATTTTCA-GCAGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGGAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTACCCTGTTTGGTTCAAGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCGTTTCCTCTTCGTCCATCCTTAAAGCCTTTGACAATTGACATACAATAATCATTGCTAGGCTCTTAATTCCTTTGCAGTATGCTTCCAAGACGTCCCTACA-TT---T---CA-AAACATATTAATTAAAAGATGAGGAGAGCAGGACATAGTTATAAGGAGATAAGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267646" ref_strand="+" ref_description="SGN-E267646 [cLEI-8-N14]">
      <seq>ttcaagtttgcaagaagagcaaatggagtcaacgccggaaaaattgaactttggaaattctctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtccgcccacaacaagaatctctggtcgtatcttccggagcatcagttccagttatcgatcttcaaaagttgatttcagggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagaggttattcaattgttcaaacttccaatggaagaaaagaagaaactgtggcaacagaaagacagctttgaaggtttcgggcatatgtttgttgtatcggaggagcagaagcttgattggagtgacatgtttggcataataaatcttcctcctcatatccgcaaagtggacttgtttcagaagttgccctcgaagctcagagacatcatggaagcatattccaaagaaatcaagaacctaacaatgatcatcgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119176" stop="116711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118876" g_stop="118609" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117011" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="516" r_length="248" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117010" i_stop="116937" i_length="74">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116936" g_stop="116879" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="574" r_length="58" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E267646" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118876" e_stop="118609"/>
          <exon e_start="117258" e_stop="117011"/>
          <exon e_start="116936" e_stop="116879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTTTGCAACAAAAGCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGACTCTTCCTCCTCGTATCCGCAAAGTGGACTTGTTTCAGAAATTGCCCTCGAATCTCAGGTGCCTATCTCCTTATAACTATATCCCGCTCTCCTCATCTTTTAATTAATATGTTTGTGTGTATTGAAATGTAGGGACGTCTTGGAAGCTTACTGCAAAGAAATTAAGAGCCTAGCAAGGATCATCGTATGC</genome_strand>
        <mrna_strand>TTCAAGTTTGCAAGAAGAGCAAATGGAGTCAACGCCGGAAAAATTGAACTTTGGAAATTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGACATGTTTGGCATAATAAATCTTCCTCCTCATATCCGCAAAGTGGACTTGTTTCAGAAGTTGCCCTCGAAGCTCAG..........................................................................AGACATCATGGAAGCATATTCCAAAGAAATCAAGAACCTAACAATGATCATCGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207227" ref_strand="+" ref_description="SGN-E207227 [cLEC-30-B22]">
      <seq>ccggaaaaattgaactttggaaaatctctgttagttccaagtgttcaagagcttgccaaacagcacctaaccattatcccagacaggtatctccagccagagcaagaaactccggtcatttccgccggagcggaggttccagttatcgatgttcaaaagttgatttcaggtgattccatggattctgagctgcaaaagcttcactctgcttgccaacaatggggtttcctacaggttataaaccatggggtgacacctttgctcttggaggacttcaagagagaggttattgaattgttcaaacttccaatggaagaaaagaagaagctatggaaacaggaagacagcttggaaggtttcgggcatgcattcgttgtgtctgaagagcacaaacttgattggagtgacaggtttggcatactgactcttcctcctcatatccgcaaagtggatttgtttcagaagttgccctcgaagctcagggatatcatggaagcatactgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119142" stop="116710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118842" g_stop="118609" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117011" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="482" r_length="248" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117010" i_stop="116937" i_length="74">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116936" g_stop="116911" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="508" r_length="26" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E207227" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118842" e_stop="118609"/>
          <exon e_start="117258" e_stop="117011"/>
          <exon e_start="116936" e_stop="116911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGACTCTTCCTCCTCGTATCCGCAAAGTGGACTTGTTTCAGAAATTGCCCTCGAATCTCAGGTGCCTATCTCCTTATAACTATATCCCGCTCTCCTCATCTTTTAATTAATATGTTTGTGTGTATTGAAATGTAGGGACGTCTTGGAAGCTTACTGCAAAG</genome_strand>
        <mrna_strand>CCGGAAAAATTGAACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCATTATCCCAGACAGGTATCTCCAGCCAGAGCAAGAAACTCCGGTCATTTCCGCCGGAGCGGAGGTTCCAGTTATCGATGTTCAAAAGTTGATTTCAGGTGATTCCATGGATTCTGAGCTGCAAAAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAACCATGGGGTGACACCTTTGCTCTTGGAGGACTTCAAGAGAGAGGTTATTGAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAGCTATGGAAACAGGAAGACAGCTTGGAAGGTTTCGGGCATGCATTCGTTGTGTCTGAAGAGCACAAACTTGATTGGAGTGACAGGTTTGGCATACTGACTCTTCCTCCTCATATCCGCAAAGTGGATTTGTTTCAGAAGTTGCCCTCGAAGCTCAG..........................................................................GGATATCATGGAAGCATACTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319740" ref_strand="+" ref_description="SGN-E319740 [cTOB-12-C24]">
      <seq>tgattaaaaacccaaacccgaatttgatagaaattttcaagtttgtaacaagagccaatggattcaaccccggaaaaattgaactttggaaaatctctgttagttccaagtgttcaagagcttgccaaacagcacctaaccattatcccagacaggtatctccagccagagcaagaaactccggtcatttccgccggagcggaggttccagttatcgatgttcaaaagttgatttcaggtgattccatggattctgagctgcaaaagcttcactctgcttgccaacaatggggtttcctacaggttataaaccatggggtgacacctttgctcttggaggacttcaagagagaggttattgaattgttcaaacttccaatggaagaaaagaagaagctatggaaacaggaagacagcttggaaggtttcgggcatgcattcgttgtgtctgaagagcagaaacttgattggagtgacaggtttggcatactgactcttcctcctcatatccgcaaagtggatttgtttcagaagttgccctcgaagctcagggatatcatggaagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119184" stop="116710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118870" g_stop="118609" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="303" r_length="262" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117011" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="551" r_length="248" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117010" i_stop="116937" i_length="74">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116936" g_stop="116917" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="571" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E319740" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118870" e_stop="118609"/>
          <exon e_start="117258" e_stop="117011"/>
          <exon e_start="116936" e_stop="116917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACAAAAGCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGACTCTTCCTCCTCGTATCCGCAAAGTGGACTTGTTTCAGAAATTGCCCTCGAATCTCAGGTGCCTATCTCCTTATAACTATATCCCGCTCTCCTCATCTTTTAATTAATATGTTTGTGTGTATTGAAATGTAGGGACGTCTTGGAAGCTTACT</genome_strand>
        <mrna_strand>TTTGTAACAAGAGCCAATGGATTCAACCCCGGAAAAATTGAACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCATTATCCCAGACAGGTATCTCCAGCCAGAGCAAGAAACTCCGGTCATTTCCGCCGGAGCGGAGGTTCCAGTTATCGATGTTCAAAAGTTGATTTCAGGTGATTCCATGGATTCTGAGCTGCAAAAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAACCATGGGGTGACACCTTTGCTCTTGGAGGACTTCAAGAGAGAGGTTATTGAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAGCTATGGAAACAGGAAGACAGCTTGGAAGGTTTCGGGCATGCATTCGTTGTGTCTGAAGAGCAGAAACTTGATTGGAGTGACAGGTTTGGCATACTGACTCTTCCTCCTCATATCCGCAAAGTGGATTTGTTTCAGAAGTTGCCCTCGAAGCTCAG..........................................................................GGATATCATGGAAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204474" ref_strand="+" ref_description="SGN-E204474 [cLEC-24-G23]">
      <seq>ttctctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtccgcccacaacaagaatctctggtcgtatcttccggagcatcagttccagttatcgatcttcaaaagttgatttcacggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagaggttattcaattgttcaaacttccaatggaagaaaagaagaaactgtggcaacagaaagacagctttgaaggtttcgggcatatgtttgttgtatcggaggagcagaagcttgattggagtgacatgtttggcataataaatcttcctcctcatatccgcaaagtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119118" stop="116740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118819" g_stop="118609" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117040" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="430" r_length="219" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E204474" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118819" e_stop="118609"/>
          <exon e_start="117258" e_stop="117040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGACTCTTCCTCCTCGTATCCGCAAAGTGGAC</genome_strand>
        <mrna_strand>TTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCACGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGACATGTTTGGCATAATAAATCTTCCTCCTCATATCCGCAAAGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277411" ref_strand="+" ref_description="SGN-E277411 [cLER-3-B23]">
      <seq>tttcaagtttgcaagaagagcaaatggagtcaacgccggaaaaattgaactttggaaattctctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtccgcccacaacaagaatctctggtcgtatcttccggagcatcagttccagttatcgatcttcaaaagttgatttcagggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagaggttattcaattgttcaaacttccaatggaagaaaagaagaaactgtggcaacagaaagacagctttgaaggtttcgggcatatgtttgttgtatcggaggagcagaagcttgattggagtgacatgtttggcataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119176" stop="116769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118877" g_stop="118609" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117069" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="459" r_length="190" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E277411" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118877" e_stop="118609"/>
          <exon e_start="117258" e_stop="117069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGTTTGCAACAAAAGCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGA</genome_strand>
        <mrna_strand>TTTCAAGTTTGCAAGAAGAGCAAATGGAGTCAACGCCGGAAAAATTGAACTTTGGAAATTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGACATGTTTGGCATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201437" ref_strand="+" ref_description="SGN-E201437 [cLEC-4-A15]">
      <seq>gcaaatggagtcaacgccggaaaaattgaactttggaaattctctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtacgtccacaacaagaatctctggtcgtatcttacggagcattagttacagttatcgatcttcaaaagttgatttcagggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagaggttattcaattgttcaaacttccaatggaagaaaagaagaaactgtggcaacagaaagacagctttgaaggtttcgggcatatgtttgttgtatcggaagagcagaagcttgattggagtgacatgtttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119158" stop="116774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118858" g_stop="118609" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117074" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="435" r_length="185" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E201437" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118858" e_stop="118609"/>
          <exon e_start="117258" e_stop="117074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCAT</genome_strand>
        <mrna_strand>GCAAATGGAGTCAACGCCGGAAAAATTGAACTTTGGAAATTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTACGTCCACAACAAGAATCTCTGGTCGTATCTTACGGAGCATTAGTTACAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAAGAGCAGAAGCTTGATTGGAGTGACATGTTTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303084" ref_strand="+" ref_description="SGN-E303084 [cLEW-26-D10]">
      <seq>ttattttttcaagtttgcaagaagagcaaatggagtcaacgccggaaaaattgaactttggaaattctctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtccgcccacaacaagaatctctggtcgtatcttccggagcatcagttccagttatcgatcttcaaaagttgatttcagggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagaggttattcaattgttcaaacttccaatggaagaaaagaagaaactgtggcaacagaaagacagctttgaaggtttcgggcatatgtttgttgtatcggaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119176" stop="116815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118870" g_stop="118609" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="275" r_length="262" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117105" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="429" r_length="154" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E303084" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118870" e_stop="118609"/>
          <exon e_start="117258" e_stop="117105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACAAAAGCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGC</genome_strand>
        <mrna_strand>TTTGCAAGAAGAGCAAATGGAGTCAACGCCGGAAAAATTGAACTTTGGAAATTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAACTTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206358" ref_strand="+" ref_description="SGN-E206358 [cLEC-23-H9]">
      <seq>tctgttagtaccaagtgttcaagagcttgccaaacagcacctaaccaatattccggacaggtatgtccgcccacaacaagaatctctggtcgtatcttccggagcatcagttccagttatcgatcttcaaaagttgatttcagggaataccatagattctgagctacaaaagcttcactctgcttgccaagaatggggtttcctacaggttgtaaaccatggagtgacaccttcgttactggaggacttcaagagagagggtattcaattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="119116" stop="116893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118816" g_stop="118609" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117258" g_stop="117193" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="274" r_length="66" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-E206358" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118816" e_stop="118609"/>
          <exon e_start="117258" e_stop="117193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAGGTTTCATTTTCTTCATAGTTTTGTTTAACTATTTCAGTTAGTAAAAGGAAATAATTAATAGTTGATGTGTGTTTTGATCGATTGTTGATGATAGTTCAAATAAGAATAGTGAATCACACAGTTGATGAGTGTTTCGATAAATTGTTGACCATAATTCAAATAGGAAAAGTGAAAATTTCATAGTTTAGTAACTTTGGAAGTAAAATATTTATAATTAAGTAACTTTTGAGTTAAAATAAAATTGAGTGAAGAGTATGTTTGATTTTAAAAAGGTGTGAATGGAAAATGAAGAGTTGCGACTTTTATGAAGAGTCGTGACTTTTATGAAATGTTGCGATTTTGATGAAAAGTTGTGACTAAAATTGTGATTTTTATGGAAAGTTGTGACTTTTATGGAAAGTTGTCGCTTTTATAAAAGGTGACGACCTTTCTGAAAGATTGTGACTTTTCCAAAGGTTTGTGACCTTTCCGGTAAGGCACAATAAGAACATTTTCACACTACCCTTTGTTTTCTATAAATTGAGGGATTTCCTCTCATTTTAATATAGAATTCATAGACTTCTTCTTCAACTACTAAATCTAATATTCTAAGTGTACTTTACTGCCGTTGAGTGGTTCGCTGACACCGGAGTTTTTGGTATCTATACTCTGGTGATTGAGATCATTTTACCCTGGAAAATAATTTTCTTAAGGGGACACTGTGAGTTCAGTGGACTCGATTTTTTTTCCTATTAAAAATTTCCAGATTCTGCTTCGTATTTTACAAATTTTAGATTTGTGAATTAATTTCAGCTCTTCTATTTTTTTTATTTCACTGGTTCACTAAACATGGTAACTTCGTGTTTCTGCAAAGTTTGTTGGAAGCAGTAAGATTCTTTAGACACATATTAACAACAATTCTTCTTTAAGAAAATATTTCGTATATTTTTTTTTTTAAATCCGTTTCTGATTCTAGTTTCACTACTAGTTCTAATTTTCTAATTGTGAAAATGTTCTTAAACTTTGTTGTCTTACAAAGATGTTCAAAGTTTGTTCTAAGTATGTTTGGAATACAAGATGAACAACAGAGTATAGTTGAGCGACTTCCTGAGAAAAAAAATTCATAATTGAGTGACTTTTGAATTAAAAACCAAAATTGAGTTTGACTTTGTGAGAACAGAGTCTATTAATTGAGTGACAATCTATGATATTGTCTCAAGAATAATATCACGTTAGCTTTAATCCTTCTCATTTTTTGTTGATAGTACGAGTGTTAGTTTAGACAAAATTAGTCTTTATTTTCTCCTAATGCGCCTAGCTTTGTAATTGTTGAAAGGTTGTTAAATTTGTTAGCATAATGTTGAATGTTAGGTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTC</genome_strand>
        <mrna_strand>TCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAGAATGGGGTTTCCTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGGTATTCAATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>85</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8882" PGL_stop="14168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8882" e_stop="9059"/>
            <exon e_start="10854" e_stop="10990"/>
            <exon e_start="11082" e_stop="11216"/>
            <exon e_start="11630" e_stop="11740"/>
            <exon e_start="11851" e_stop="12117"/>
            <exon e_start="14144" e_stop="14168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.017" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8882" e_stop="9059" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10854" e_stop="10990" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.017" acc_prob="0.922">
            <gDNA_intron_boundary i_start="10991" i_stop="11081" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11082" e_stop="11216" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.584" acc_prob="0.943">
            <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11630" e_stop="11740" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.880">
            <gDNA_intron_boundary i_start="11741" i_stop="11850" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11851" e_stop="12117" e_length="267"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12118" i_stop="14143" i_length="2026"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14144" e_stop="14168" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8882" stop="9059"/>
              <exon start="10854" stop="10990"/>
              <exon start="11082" stop="11216"/>
              <exon start="11630" stop="11740"/>
              <exon start="11851" stop="12117"/>
              <exon start="14144" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTG : CTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAG : CCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAG : GCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAG : GAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTT : GAATGGAAAGAGAGAAAAAAGTCTC</gDNA_template>
            <first_frame> G  S  S  A  L  S  C  S  S  N  S  I  S  A  P  V  G  L  C  C  S  Q  R  L  T  L  P  F  R  N  Q  R  I  G  F  L  E  N  P  S  S  L  K  I  F  H  F  H  R  N  T  T  L  P  L  L  N  C  T   : A  T  E  E  I  V  E  A  S  E  T  E  G  L  F  V  E  T  G  Y  I  Y  S  V  H  G  L  Q  G  E  V  R  V  K  A  T  T  D  F  P  E  L  R  F  S  Q  :  P  G  R  R  W  L  R  Q  Q  V  T  G  R  D  M  I  Q  E  I  E  L  V  E  G  R  G  H  P  G  Q  K  S  W  I  L  K  F  H  E  I  N  T  I  E  Q  :  A  Q  K  L  V  G  S  A  L  L  V  K  N  E  D  R  P  I  L  E  E  G  E  F  Y  T  P  D  L  V  G  M  K  V  F  L  K  :  E  T  R  E  L  V  G  T  V  I  N  V  F  N  S  G  A  S  D  L  L  H  V  E  L  L  P  N  Q  N  A  R  P  Q  L  E  G  S  A  S  G  P  L  V  W  V  P  F  V  E  A  I  V  P  N  I  D  L  S  K  R  E  M  L  I  T  P  P  K  G  L  L  E  L  N  I  R  A  D  E  R  S  K  K  E  R  R  Q  L  :  E  W  K  E  R  K  K  S  </first_frame>
            <second_frame>  A  P  L  L  F  P  V  L  Q  I  L  S  L  L  Q  L  V  F  V  V  L  K  D  *  H  F  L  F  E  I  K  E  L  G  F  W  K  I  H  Q  A  *  R  F  S  I  F  T  E  T  L  P  S  L  C  *  T  A  L  :  L  R  K  R  S  W  R  L  V  K  Q  R  D  Y  L  L  K  L  G  T  Y  I  V  F  M  G  F  K  V  R  F  E  *  K  R  Q  L  I  S  L  N  C  D  F  P  S :   Q  E  G  D  G  *  G  S  K  L  Q  G  E  I  *  F  K  K  S  N  *  W  R  E  E  V  I  Q  D  R  R  V  G  Y  L  N  S  T  R  L  T  Q  L  S  R :   P  K  N  L  W  G  R  P  Y  W  *  R  M  K  I  D  Q  S  W  R  K  V  N  F  T  P  L  T  L  L  G  *  K  Y  F  *  R :   K  L  E  N  W  *  E  L  L  L  M  F  S  T  V  E  L  V  I  S  Y  M  L  S  F  Y  R  I  K  M  Q  D  H  S  W  K  E  V  H  L  V  L  L  Y  G  S  L  S  L  K  Q  L  F  Q  I  L  I  *  V  K  G  K  C  *  L  H  L  Q  R  V  F  *  N  *  T  S  V  Q  M  R  G  P  R  K  R  G  D  S  L :   N  G  K  R  E  K  S  L </second_frame>
            <third_frame>   L  L  C  S  F  L  F  F  K  F  Y  L  C  S  S  W  S  L  L  F  S  K  I  N  T  S  F  S  K  S  K  N  W  V  S  G  K  S  I  K  L  E  D  F  P  F  S  P  K  H  Y  P  P  F  A  E  L  H  C :   Y  G  R  D  R  G  G  *  *  N  R  G  I  I  C  *  N  W  V  H  I  *  C  S  W  A  S  R  *  G  S  S  K  S  D  N  *  F  P  *  I  A  I  F  P   : A  R  K  A  M  V  E  A  A  S  Y  R  E  R  Y  D  S  R  N  R  T  S  G  G  K  R  S  S  R  T  E  E  L  D  T  *  I  P  R  D  *  H  N  *  A   : G  P  K  T  C  G  V  G  L  T  G  E  E  *  R  *  T  N  P  G  G  R  *  I  L  H  P  *  P  C  W  D  E  S  I  S  K   : G  N  *  R  T  G  R  N  C  Y  *  C  F  Q  Q  W  S  *  *  S  P  T  C  *  A  S  T  E  S  K  C  K  T  T  V  G  R  K  C  I  W  S  S  C  M  G  P  F  R  *  S  N  C  S  K  Y  *  F  E  *  K  G  N  A  D  Y  T  S  K  G  S  F  R  I  E  H  P  C  R  *  E  V  Q  E  R  E  A  T  A   : *  M  E  R  E  K  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8882" stop="9059"/>
                    <exon start="10854" stop="10990"/>
                    <exon start="11082" stop="11216"/>
                    <exon start="11630" stop="11740"/>
                    <exon start="11851" stop="12117"/>
                    <exon start="14144" stop="14167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSALSCSSNSISAPVGLCCSQRLTLPFRNQRIGFLENPSSLKIFHFHRNTTLPLLNCTATEEIVEASETEGLFVETGYIYSVHGLQGEVRVKATTDFPELRFSQPGRRWLRQQVTGRDMIQEIELVEGRGHPGQKSWILKFHEINTIEQAQKLVGSALLVKNEDRPILEEGEFYTPDLVGMKVFLKETRELVGTVINVFNSGASDLLHVELLPNQNARPQLEGSASGPLVWVPFVEAIVPNIDLSKREMLITPPKGLLELNIRADERSKKERRQLEWKERKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8892" e_stop="9059"/>
            <exon e_start="10854" e_stop="10908"/>
            <exon e_start="10991" e_stop="11216"/>
            <exon e_start="11630" e_stop="11649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.945"/>
          <exon-intron don_prob="0.584" acc_prob="0.943" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="8892" e_stop="9059" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="10854" e_stop="10908" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10909" i_stop="10990" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="10991" e_stop="11216" e_length="226"/>
          </exon>
          <intron i_serial="3" don_prob="0.584" acc_prob="0.943">
            <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11630" e_stop="11649" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8892" stop="9059"/>
              <exon start="10854" stop="10908"/>
              <exon start="10991" stop="11216"/>
              <exon start="11630" stop="11649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTG : CTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGG : GTAGAAAGCATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAG : GCCCAAAAACTTGTGGGGTC</gDNA_template>
            <first_frame> L  F  P  V  L  Q  I  L  S  L  L  Q  L  V  F  V  V  L  K  D  *  H  F  L  F  E  I  K  E  L  G  F  W  K  I  H  Q  A  *  R  F  S  I  F  T  E  T  L  P  S  L  C  *  T  A  L  :  L  R  K  R  S  W  R  L  V  K  Q  R  D  Y  L  L  K  L   : G  R  K  H  Q  E  L  N  N  G  T  G  F  S  F  L  A  F  M  R  I  S  F  S  *  I  H  S  *  F  S  Q  E  G  D  G  *  G  S  K  L  Q  G  E  I  *  F  K  K  S  N  *  W  R  E  E  V  I  Q  D  R  R  V  G  Y  L  N  S  T  R  L  T  Q  L  S  R :   P  K  N  L  W  G  </first_frame>
            <second_frame>  S  F  L  F  F  K  F  Y  L  C  S  S  W  S  L  L  F  S  K  I  N  T  S  F  S  K  S  K  N  W  V  S  G  K  S  I  K  L  E  D  F  P  F  S  P  K  H  Y  P  P  F  A  E  L  H  C :   Y  G  R  D  R  G  G  *  *  N  R  G  I  I  C  *  N  W  :  V  E  S  I  R  N  L  I  M  G  L  V  S  R  F  W  P  S  *  E  Y  P  F  H  E  F  T  L  N  L  A  R  K  A  M  V  E  A  A  S  Y  R  E  R  Y  D  S  R  N  R  T  S  G  G  K  R  S  S  R  T  E  E  L  D  T  *  I  P  R  D  *  H  N  *  A   : G  P  K  T  C  G  V </second_frame>
            <third_frame>   L  S  C  S  S  N  S  I  S  A  P  V  G  L  C  C  S  Q  R  L  T  L  P  F  R  N  Q  R  I  G  F  L  E  N  P  S  S  L  K  I  F  H  F  H  R  N  T  T  L  P  L  L  N  C  T   : A  T  E  E  I  V  E  A  S  E  T  E  G  L  F  V  E  T  G :   *  K  A  S  G  T  *  *  W  D  W  F  L  V  F  G  L  H  E  N  I  L  F  M  N  S  L  L  I  *  P  G  R  R  W  L  R  Q  Q  V  T  G  R  D  M  I  Q  E  I  E  L  V  E  G  R  G  H  P  G  Q  K  S  W  I  L  K  F  H  E  I  N  T  I  E  Q  :  A  Q  K  L  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8894" stop="9059"/>
                    <exon start="10854" stop="10908"/>
                    <exon start="10991" stop="10994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSCSSNSISAPVGLCCSQRLTLPFRNQRIGFLENPSSLKIFHFHRNTTLPLLNCTATEEIVEASETEGLFVETG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22943" PGL_stop="26693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24979" e_stop="26693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="24979" e_stop="26693" e_length="1715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24979" stop="25536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25031" stop="25652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25045" stop="25810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25051" stop="25631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25057" stop="25556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25068" stop="25506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25280" stop="25826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25280" stop="25626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25336" stop="25943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="26155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25755" stop="26267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25806" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26113" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26147" stop="26693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCAAATTTTTTA</gDNA_template>
            <first_frame> S  R  L  Y  S  V  A  G  C  F  V  F  T  G  R  N  *  L  *  S  R  S  C  D  T  V  A  S  L  *  I  S  F  L  L  L  *  P  C  L  H  V  F  C  *  R  R  L  Y  F  V  A  *  K  I  S  A  M  L  I  Y  I  I  F  Q  Q  H  L  V  V  Y  Y  *  T  S  L  L  N  L  S  T  L  V  C  C  A  Y  F  V  V  F  L  C  W  K  W  K  V  M  T  V  I  V  A  P  V  L  S  C  I  Q  F  I  G  F  A  R  W  *  L  T  H  C  F  *  S  F  L  N  N  N  I  K  L  Y  I  C  V  V  L  A  F  L  F  D  A  K  L  V  Y  *  V  V  K  R  T  C  D  D  A  Y  P  P  I  L  E  G  S  T  M  N  T  I  H  A  L  P  S  D  L  I  A  C  L  I  I  L  *  G  F  G  F  P  N  F  I  C  I  V  I  W  F  K  G  L  S  V  *  S  L  M  I  F  F  I  I  A  D  *  P  V  I  N  T  R  I  S  P  Y  F  C  W  D  C  I  *  D  M  L  C  A  V  L  F  F  N  F  C  L  K  S  C  C  L  W  Y  I  L  C  P  D  Y  F  V  A  G  C  F  V  L  W  A  E  I  K  Q  K  N  R  S  C  D  T  V  G  F  S  I  N  K  L  S  V  T  V  N  P  A  Y  I  P  P  I  F  Q  P  F  L  C  I  F  S  S  V  Q  H  F  T  R  L  Y  R  H  F  C  L  M  F  L  S  T  L  V  K  N  V  I  C  F  T  C  L  G  P  S  H  V  C  E  V  Y  L  V  E  I  I  F  I  Y  R  T  T  D  K  L  A  Q  T  K  G  Y  *  L  Q  S  W  K  E  V  Q  G  M  C  L  N  A  Q  Y  W  L  R  F  *  Q  D  D  S  P  L  S  T  R  W  L  *  D  V  C  C  A  Q  C  K  *  T  *  Y  F  V  D  A  Q  H  V  M  Q  G  S  K  I  C  L  L  I  P  S  L  L  R  F  V  T  S  P  L  A  Y  S  Q  D  L  L  C  *  D  C  T  *  C  I  H  K  E  K  E  R  N  S  *  E  S  V  P  A  *  C  R  S  N  *  Q  A  C  *  V  A  *  P  G  G  *  M  S  F  L  G  C  K  G  C  Q  Q  N  S  S  I  I  N  W  Q  M  C  S  N  V  I  L  D  V  Q  L  V  *  *  M  N  I  I  L  F  T  C  L  *  E  L  L  N  E  N  I  M  T  T  L  K  N  T  P  Q  Y  H  E  N  D  H  Y  E  *  T  I  E  N  S  *  L  F  L  Q  I  F   </first_frame>
            <second_frame>  P  D  F  T  L  L  L  G  V  S  F  L  R  A  E  T  N  F  K  A  G  L  A  T  Q  L  L  L  C  K  *  A  F  C  Y  F  N  P  A  Y  M  S  S  V  K  G  D  C  I  L  W  H  E  K  S  L  Q  C  *  Y  I  L  F  F  S  S  I  L  *  F  I  I  K  H  H  Y  *  I  Y  L  P  L  F  V  V  L  I  L  L  F  F  C  V  G  N  G  K  *  *  Q  *  L  S  P  Q  S  *  V  A  S  N  L  L  D  S  Q  G  G  D  *  L  I  V  S  D  P  S  *  T  I  I  L  N  C  I  F  V  W  F  *  L  S  C  L  M  L  S  L  F  I  E  L  *  K  E  R  V  M  M  R  I  H  L  F  S  R  V  R  R  *  I  Q  Y  M  H  Y  H  L  I  L  *  H  V  S  S  F  F  E  V  L  V  S  P  I  L  S  V  L  *  F  G  L  K  V  *  V  F  S  H  *  *  F  F  S  *  L  L  I  D  Q  *  L  I  Q  E  Y  H  H  I  S  A  G  I  A  S  K  T  C  F  V  Q  Y  Y  S  S  I  F  V  *  N  L  V  A  Y  G  I  S  Y  V  Q  T  T  L  L  L  G  V  S  F  Y  G  Q  K  L  N  K  R  T  D  L  A  T  Q  L  A  S  V  S  I  S  F  L  L  L  L  T  L  L  T  S  L  L  S  F  N  L  F  Y  V  Y  L  V  V  F  N  T  S  L  D  Y  I  D  I  F  V  *  C  F  S  Q  P  L  *  R  M  *  F  V  S  L  A  L  A  Q  V  M  C  A  R  F  T  *  W  K  *  F  S  F  I  G  Q  L  T  N  W  R  R  P  K  G  I  D  S  R  V  G  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  M  T  R  H  Y  L  P  D  G  F  K  M  F  V  V  H  N  A  S  E  L  D  I  L  L  M  R  N  M  *  C  K  G  A  K  F  V  C  L  F  H  P  C  F  A  S  *  H  H  H  *  L  I  H  R  T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  V  S  Q  L  D  V  V  V  T  N  K  L  A  R  L  R  S  Q  E  D  E  *  A  F  L  V  V  R  V  V  N  R  I  H  P  *  S  T  G  K  C  V  A  M  *  F  L  M  Y  N  W  Y  S  K  *  I  *  F  S  S  L  A  C  K  N  F  *  M  R  T  L  *  R  R  *  K  I  L  H  N  T  M  R  M  I  I  M  N  K  R  L  K  I  L  N  Y  S  S  K  F  F  </second_frame>
            <third_frame>   Q  T  L  L  C  C  W  V  F  R  F  Y  G  Q  K  L  T  L  K  Q  V  L  R  H  S  C  F  S  V  N  K  L  S  V  T  L  T  L  L  T  C  L  L  L  K  E  I  V  F  C  G  M  K  N  L  C  N  A  N  I  Y  Y  F  S  A  A  S  C  S  L  L  L  N  I  I  I  K  F  I  Y  P  C  L  L  C  L  F  C  C  F  F  V  L  E  M  E  S  D  D  S  D  C  R  P  S  L  K  L  H  P  I  Y  W  I  R  K  V  V  I  D  S  L  F  L  I  L  P  K  Q  *  Y  *  I  V  Y  L  C  G  F  S  F  L  V  *  C  *  A  C  L  L  S  C  E  K  N  V  *  *  C  V  S  T  Y  S  R  G  F  D  D  E  Y  N  T  C  T  T  I  *  S  Y  S  M  S  H  H  S  L  R  F  W  F  P  Q  F  Y  L  Y  C  D  L  V  *  R  F  K  C  L  V  T  D  D  F  F  H  N  C  *  L  T  S  D  *  Y  K  N  I  T  I  F  L  L  G  L  H  L  R  H  A  L  C  S  T  I  L  Q  F  L  F  K  I  L  L  P  M  V  Y  L  M  S  R  L  L  C  C  W  V  F  R  F  M  G  R  N  *  T  K  E  Q  I  L  R  H  S  W  L  Q  Y  Q  *  A  F  C  Y  C  *  P  C  L  H  P  S  Y  L  S  T  F  S  M  Y  I  *  *  C  S  T  L  H  S  I  I  *  T  F  L  F  D  V  S  L  N  P  C  E  E  C  D  L  F  H  L  P  W  P  K  S  C  V  R  G  L  L  S  G  N  N  F  H  L  S  D  N  *  Q  T  G  A  D  Q  R  V  L  T  P  E  L  E  G  S  S  R  D  V  S  *  C  P  I  L  A  T  V  L  T  R  *  L  A  T  I  Y  P  M  A  L  R  C  L  L  C  T  M  Q  V  N  L  I  F  C  *  C  A  T  C  D  A  R  E  Q  N  L  F  A  Y  S  I  L  A  S  L  R  D  I  T  I  S  L  F  T  G  L  T  V  L  R  L  H  I  M  Y  P  Q  G  K  G  K  K  *  L  R  E  C  P  S  L  M  S  *  *  L  T  S  L  L  G  C  V  A  R  R  M  N  E  L  S  W  L  *  G  L  S  T  E  F  I  H  N  Q  L  A  N  V  *  Q  C  N  S  *  C  T  I  G  I  V  N  E  Y  N  S  L  H  L  L  V  R  T  S  K  *  E  H  Y  D  D  A  K  K  Y  S  T  I  P  *  E  *  S  L  *  I  N  D  *  K  F  L  I  I  P  P  N  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25687" stop="26094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMLCAVLFFNFCLKSCCLWYILCPDYFVAGCFVLWAEIKQKNRSCDTVGFSINKLSVTVNPAYIPPIFQPFLCIFSSVQHFTRLYRHFCLMFLSTLVKNVICFTCLGPSHVCEVYLVEIIFIYRTTDKLAQTKGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24981" stop="25370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTLLCCWVFRFYGQKLTLKQVLRHSCFSVNKLSVTLTLLTCLLLKEIVFCGMKNLCNANIYYFSAASCSLLLNIIIKFIYPCLLCLFCCFFVLEMESDDSDCRPSLKLHPIYWIRKVVIDSLFLILPKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22966" e_stop="23338"/>
            <exon e_start="25329" e_stop="26693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.678" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22966" e_stop="23338" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.678" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23339" i_stop="25328" i_length="1990"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="25329" e_stop="26693" e_length="1365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22966" stop="23338"/>
              <exon start="25329" stop="25626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22967" stop="23338"/>
              <exon start="25329" stop="25501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25336" stop="25943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="26155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25755" stop="26267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25806" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26113" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26147" stop="26693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAG : GTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCAAATTTTTTA</gDNA_template>
            <first_frame> *  A  P  F  S  F  V  C  S  F  Q  C  L  I  S  V  H  N  V  C  S  F  V  I  E  G  E  V  E  L  Q  W  R  F  L  Y  *  K  R  K  L  S  R  K  G  *  S  N  S  R  G  I  R  V  I  G  E  S  L  L  R  Y  C  F  F  I  S  *  N  P  S  F  A  L  S  S  I  G  *  *  *  K  K  L  V  S  L  W  V  D  K  K  I  G  F  C  W  V  F  C  V  R  E  G  K  *  *  E  L  L  S  P  Q  S  *  F  A  S  N  L  L  D  S  Q   : G  G  D  *  L  I  V  S  D  P  S  *  T  I  I  L  N  C  I  F  V  W  F  *  L  S  C  L  M  L  S  L  F  I  E  L  *  K  E  R  V  M  M  R  I  H  L  F  S  R  V  R  R  *  I  Q  Y  M  H  Y  H  L  I  L  *  H  V  S  S  F  F  E  V  L  V  S  P  I  L  S  V  L  *  F  G  L  K  V  *  V  F  S  H  *  *  F  F  S  *  L  L  I  D  Q  *  L  I  Q  E  Y  H  H  I  S  A  G  I  A  S  K  T  C  F  V  Q  Y  Y  S  S  I  F  V  *  N  L  V  A  Y  G  I  S  Y  V  Q  T  T  L  L  L  G  V  S  F  Y  G  Q  K  L  N  K  R  T  D  L  A  T  Q  L  A  S  V  S  I  S  F  L  L  L  L  T  L  L  T  S  L  L  S  F  N  L  F  Y  V  Y  L  V  V  F  N  T  S  L  D  Y  I  D  I  F  V  *  C  F  S  Q  P  L  *  R  M  *  F  V  S  L  A  L  A  Q  V  M  C  A  R  F  T  *  W  K  *  F  S  F  I  G  Q  L  T  N  W  R  R  P  K  G  I  D  S  R  V  G  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  M  T  R  H  Y  L  P  D  G  F  K  M  F  V  V  H  N  A  S  E  L  D  I  L  L  M  R  N  M  *  C  K  G  A  K  F  V  C  L  F  H  P  C  F  A  S  *  H  H  H  *  L  I  H  R  T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  V  S  Q  L  D  V  V  V  T  N  K  L  A  R  L  R  S  Q  E  D  E  *  A  F  L  V  V  R  V  V  N  R  I  H  P  *  S  T  G  K  C  V  A  M  *  F  L  M  Y  N  W  Y  S  K  *  I  *  F  S  S  L  A  C  K  N  F  *  M  R  T  L  *  R  R  *  K  I  L  H  N  T  M  R  M  I  I  M  N  K  R  L  K  I  L  N  Y  S  S  K  F  F  </first_frame>
            <second_frame>  E  P  L  F  P  L  F  V  L  F  N  V  *  F  L  Y  T  M  F  V  L  L  *  S  K  V  K  *  S  Y  N  G  D  S  S  T  E  K  E  S  Y  Q  E  K  G  E  A  I  Q  E  A  S  E  *  *  E  N  H  C  *  G  I  V  F  L  F  L  E  T  P  L  L  H  *  A  L  L  G  N  S  E  K  S  S  S  L  Y  G  L  T  K  K  L  D  F  V  G  F  F  V  F  E  R  E  N  D  E  S  Y  C  R  P  S  L  N  L  H  P  I  Y  W  I  R  K  :  V  V  I  D  S  L  F  L  I  L  P  K  Q  *  Y  *  I  V  Y  L  C  G  F  S  F  L  V  *  C  *  A  C  L  L  S  C  E  K  N  V  *  *  C  V  S  T  Y  S  R  G  F  D  D  E  Y  N  T  C  T  T  I  *  S  Y  S  M  S  H  H  S  L  R  F  W  F  P  Q  F  Y  L  Y  C  D  L  V  *  R  F  K  C  L  V  T  D  D  F  F  H  N  C  *  L  T  S  D  *  Y  K  N  I  T  I  F  L  L  G  L  H  L  R  H  A  L  C  S  T  I  L  Q  F  L  F  K  I  L  L  P  M  V  Y  L  M  S  R  L  L  C  C  W  V  F  R  F  M  G  R  N  *  T  K  E  Q  I  L  R  H  S  W  L  Q  Y  Q  *  A  F  C  Y  C  *  P  C  L  H  P  S  Y  L  S  T  F  S  M  Y  I  *  *  C  S  T  L  H  S  I  I  *  T  F  L  F  D  V  S  L  N  P  C  E  E  C  D  L  F  H  L  P  W  P  K  S  C  V  R  G  L  L  S  G  N  N  F  H  L  S  D  N  *  Q  T  G  A  D  Q  R  V  L  T  P  E  L  E  G  S  S  R  D  V  S  *  C  P  I  L  A  T  V  L  T  R  *  L  A  T  I  Y  P  M  A  L  R  C  L  L  C  T  M  Q  V  N  L  I  F  C  *  C  A  T  C  D  A  R  E  Q  N  L  F  A  Y  S  I  L  A  S  L  R  D  I  T  I  S  L  F  T  G  L  T  V  L  R  L  H  I  M  Y  P  Q  G  K  G  K  K  *  L  R  E  C  P  S  L  M  S  *  *  L  T  S  L  L  G  C  V  A  R  R  M  N  E  L  S  W  L  *  G  L  S  T  E  F  I  H  N  Q  L  A  N  V  *  Q  C  N  S  *  C  T  I  G  I  V  N  E  Y  N  S  L  H  L  L  V  R  T  S  K  *  E  H  Y  D  D  A  K  K  Y  S  T  I  P  *  E  *  S  L  *  I  N  D  *  K  F  L  I  I  P  P  N  F  L </second_frame>
            <third_frame>   S  P  F  F  L  C  L  F  F  S  M  F  N  F  C  T  Q  C  L  F  F  C  N  R  R  *  S  R  V  T  M  A  I  P  L  L  K  K  K  V  I  K  K  R  V  K  Q  F  K  R  H  Q  S  D  R  R  I  T  V  K  V  L  F  F  Y  F  L  K  P  L  F  C  I  K  L  Y  W  V  I  V  K  K  A  R  L  F  M  G  *  Q  K  N  W  I  L  L  G  F  L  C  S  R  G  K  M  M  R  V  I  V  A  P  V  L  I  C  I  Q  F  I  G  F  A  R :   W  *  L  T  H  C  F  *  S  F  L  N  N  N  I  K  L  Y  I  C  V  V  L  A  F  L  F  D  A  K  L  V  Y  *  V  V  K  R  T  C  D  D  A  Y  P  P  I  L  E  G  S  T  M  N  T  I  H  A  L  P  S  D  L  I  A  C  L  I  I  L  *  G  F  G  F  P  N  F  I  C  I  V  I  W  F  K  G  L  S  V  *  S  L  M  I  F  F  I  I  A  D  *  P  V  I  N  T  R  I  S  P  Y  F  C  W  D  C  I  *  D  M  L  C  A  V  L  F  F  N  F  C  L  K  S  C  C  L  W  Y  I  L  C  P  D  Y  F  V  A  G  C  F  V  L  W  A  E  I  K  Q  K  N  R  S  C  D  T  V  G  F  S  I  N  K  L  S  V  T  V  N  P  A  Y  I  P  P  I  F  Q  P  F  L  C  I  F  S  S  V  Q  H  F  T  R  L  Y  R  H  F  C  L  M  F  L  S  T  L  V  K  N  V  I  C  F  T  C  L  G  P  S  H  V  C  E  V  Y  L  V  E  I  I  F  I  Y  R  T  T  D  K  L  A  Q  T  K  G  Y  *  L  Q  S  W  K  E  V  Q  G  M  C  L  N  A  Q  Y  W  L  R  F  *  Q  D  D  S  P  L  S  T  R  W  L  *  D  V  C  C  A  Q  C  K  *  T  *  Y  F  V  D  A  Q  H  V  M  Q  G  S  K  I  C  L  L  I  P  S  L  L  R  F  V  T  S  P  L  A  Y  S  Q  D  L  L  C  *  D  C  T  *  C  I  H  K  E  K  E  R  N  S  *  E  S  V  P  A  *  C  R  S  N  *  Q  A  C  *  V  A  *  P  G  G  *  M  S  F  L  G  C  K  G  C  Q  Q  N  S  S  I  I  N  W  Q  M  C  S  N  V  I  L  D  V  Q  L  V  *  *  M  N  I  I  L  F  T  C  L  *  E  L  L  N  E  N  I  M  T  T  L  K  N  T  P  Q  Y  H  E  N  D  H  Y  E  *  T  I  E  N  S  *  L  F  L  Q  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25687" stop="26094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMLCAVLFFNFCLKSCCLWYILCPDYFVAGCFVLWAEIKQKNRSCDTVGFSINKLSVTVNPAYIPPIFQPFLCIFSSVQHFTRLYRHFCLMFLSTLVKNVICFTCLGPSHVCEVYLVEIIFIYRTTDKLAQTKGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22943" e_stop="22964"/>
            <exon e_start="23042" e_stop="23147"/>
            <exon e_start="26013" e_stop="26693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.955"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="22943" e_stop="22964" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="22965" i_stop="23041" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="23042" e_stop="23147" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23148" i_stop="26012" i_length="2865"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="26013" e_stop="26693" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22943" stop="22964"/>
              <exon start="23042" stop="23147"/>
              <exon start="26013" stop="26462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26113" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26147" stop="26693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGAAGAAACCCTAATTCACA : GTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAG : TCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCAAATTTTTTA</gDNA_template>
            <first_frame> S  E  E  T  L  I  H   : S  E  V  E  L  Q  W  R  F  L  Y  *  K  R  K  L  S  R  K  G  *  S  N  S  R  G  I  R  V  I  G  E  S  L  L  S :   H  V  C  E  V  Y  L  V  E  I  I  F  I  Y  R  T  T  D  K  L  A  Q  T  K  G  Y  *  L  Q  S  W  K  E  V  Q  G  M  C  L  N  A  Q  Y  W  L  R  F  *  Q  D  D  S  P  L  S  T  R  W  L  *  D  V  C  C  A  Q  C  K  *  T  *  Y  F  V  D  A  Q  H  V  M  Q  G  S  K  I  C  L  L  I  P  S  L  L  R  F  V  T  S  P  L  A  Y  S  Q  D  L  L  C  *  D  C  T  *  C  I  H  K  E  K  E  R  N  S  *  E  S  V  P  A  *  C  R  S  N  *  Q  A  C  *  V  A  *  P  G  G  *  M  S  F  L  G  C  K  G  C  Q  Q  N  S  S  I  I  N  W  Q  M  C  S  N  V  I  L  D  V  Q  L  V  *  *  M  N  I  I  L  F  T  C  L  *  E  L  L  N  E  N  I  M  T  T  L  K  N  T  P  Q  Y  H  E  N  D  H  Y  E  *  T  I  E  N  S  *  L  F  L  Q  I  F   </first_frame>
            <second_frame>  L  K  K  P  *  F  T  :  V  K  *  S  Y  N  G  D  S  S  T  E  K  E  S  Y  Q  E  K  G  E  A  I  Q  E  A  S  E  *  *  E  N  H  C  *   : V  M  C  A  R  F  T  *  W  K  *  F  S  F  I  G  Q  L  T  N  W  R  R  P  K  G  I  D  S  R  V  G  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  M  T  R  H  Y  L  P  D  G  F  K  M  F  V  V  H  N  A  S  E  L  D  I  L  L  M  R  N  M  *  C  K  G  A  K  F  V  C  L  F  H  P  C  F  A  S  *  H  H  H  *  L  I  H  R  T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  V  S  Q  L  D  V  V  V  T  N  K  L  A  R  L  R  S  Q  E  D  E  *  A  F  L  V  V  R  V  V  N  R  I  H  P  *  S  T  G  K  C  V  A  M  *  F  L  M  Y  N  W  Y  S  K  *  I  *  F  S  S  L  A  C  K  N  F  *  M  R  T  L  *  R  R  *  K  I  L  H  N  T  M  R  M  I  I  M  N  K  R  L  K  I  L  N  Y  S  S  K  F  F  </second_frame>
            <third_frame>   *  R  N  P  N  S  Q :   *  S  R  V  T  M  A  I  P  L  L  K  K  K  V  I  K  K  R  V  K  Q  F  K  R  H  Q  S  D  R  R  I  T  V  K  :  S  C  V  R  G  L  L  S  G  N  N  F  H  L  S  D  N  *  Q  T  G  A  D  Q  R  V  L  T  P  E  L  E  G  S  S  R  D  V  S  *  C  P  I  L  A  T  V  L  T  R  *  L  A  T  I  Y  P  M  A  L  R  C  L  L  C  T  M  Q  V  N  L  I  F  C  *  C  A  T  C  D  A  R  E  Q  N  L  F  A  Y  S  I  L  A  S  L  R  D  I  T  I  S  L  F  T  G  L  T  V  L  R  L  H  I  M  Y  P  Q  G  K  G  K  K  *  L  R  E  C  P  S  L  M  S  *  *  L  T  S  L  L  G  C  V  A  R  R  M  N  E  L  S  W  L  *  G  L  S  T  E  F  I  H  N  Q  L  A  N  V  *  Q  C  N  S  *  C  T  I  G  I  V  N  E  Y  N  S  L  H  L  L  V  R  T  S  K  *  E  H  Y  D  D  A  K  K  Y  S  T  I  P  *  E  *  S  L  *  I  N  D  *  K  F  L  I  I  P  P  N  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26045" stop="26251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFIGQLTNWRRPKGIDSRVGRKFKGCVLMPNIGYGSDKMTRHYLPDGFKMFVVHNASELDILLMRNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32230" PGL_stop="33473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32230" e_stop="32464"/>
            <exon e_start="32684" e_stop="32903"/>
            <exon e_start="33037" e_stop="33082"/>
            <exon e_start="33162" e_stop="33473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32230" e_stop="32464" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32684" e_stop="32903" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.930">
            <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33037" e_stop="33082" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.953">
            <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="33162" e_stop="33473" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32230" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33082"/>
              <exon start="33162" stop="33201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32231" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33082"/>
              <exon start="33162" stop="33473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32231" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33082"/>
              <exon start="33162" stop="33402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32232" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32322" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33082"/>
              <exon start="33162" stop="33466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG : GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG : CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG : AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCCAGAAGAAAATTGGACAT</gDNA_template>
            <first_frame> T  *  S  S  *  P  L  Q  H  K  K  R  K  K  L  I  Q  F  S  S  K  R  G  F  K  P  Y  Y  H  Y  H  F  Q  E  P  R  M  A  S  E  Q  M  K  P  V  A  S  L  L  L  V  L  N  F  C  M  Y  V  V  V  L  G  I  G  G  W  A  M  N  F  A  I  D  N  G  F  V  I   : G  P  G  M  N  L  P  A  H  F  S  P  I  Y  F  P  I  G  N  A  A  T  G  F  F  V  V  F  A  L  I  A  G  V  V  G  V  A  S  V  L  S  G  L  N  H  I  R  H  W  N  I  D  S  L  P  S  A  A  S  A  A  T  I  A  W  S  L  T  V  L  A  M  G :   F  A  W  K  E  I  E  L  N  Y  R  N  S  K  L  :  K  T  M  E  A  F  M  I  I  L  S  F  T  Q  L  V  Y  I  A  A  I  H  G  A  S  S  R  R  *  M  S  F  E  D  K  S  Y  R  V  K  F  I  D  *  D  C  C  F  L  F  F  F  C  F  N  N  C  V  I  V  F  I  H  Y  C  V  H  K  V  G  Q  M  A  V  C  I  S  T  I  F  S  I  H  I  V  R  N  K  *  V  M  Y  P  S  L  A  F  S  Q  K  K  I  G  H </first_frame>
            <second_frame>  H  N  L  L  S  L  Y  N  T  K  K  E  K  N  L  F  S  F  H  Q  K  E  V  S  S  L  T  I  I  I  I  F  K  N  Q  E  W  L  V  S  R  *  N  L  L  H  L  C  F  W  S  L  I  S  A  C  M  L  L  F  *  V  L  V  V  G  L  *  T  L  P  L  I  M  V  L  S  L  :  V  Q  E  *  I  F  Q  H  I  S  H  Q  F  T  S  Q  L  E  M  L  P  L  D  S  L  L  Y  L  L  *  *  Q  V  W  L  E  L  H  L  F  S  L  D  L  T  T  F  A  I  G  T  S  I  A  Y  H  L  L  L  L  L  L  Q  *  P  G  V  L  Q  S  L  P  W   : A  L  L  G  K  K  L  N  S  T  T  G  I  P  N  * :   K  Q  W  R  H  S  *  *  F  Y  H  L  L  N  W  Y  T  *  L  P  F  M  V  L  H  Q  G  D  K  *  A  S  K  I  N  R  I  V  *  N  L  L  I  E  T  V  V  S  F  S  F  F  V  L  T  I  V  S  L  Y  L  F  I  I  V  Y  T  K  L  A  R  W  L  F  V  Y  Q  L  S  S  V  F  I  L  *  E  T  N  K  *  C  T  L  H  W  L  F  P  R  R  K  L  D   </second_frame>
            <third_frame>   I  I  F  L  A  F  T  T  Q  K  K  K  K  T  Y  S  V  F  I  K  K  R  F  Q  A  L  L  S  L  S  F  S  R  T  K  N  G  *  *  A  D  E  T  C  C  I  F  A  F  G  P  *  F  L  H  V  C  C  C  F  R  Y  W  W  L  G  Y  E  L  C  H  *  *  W  F  C  H  W :   S  R  N  E  S  S  S  T  F  L  T  N  L  L  P  N  W  K  C  C  H  W  I  L  C  C  I  C  F  D  S  R  C  G  W  S  C  I  C  S  L  W  T  *  P  H  S  P  L  E  H  R  *  L  T  I  C  C  F  C  C  Y  N  S  L  E  S  Y  S  P  C  H  G  :  L  C  L  E  R  N  *  T  Q  L  Q  E  F  Q  I   : E  N  N  G  G  I  H  D  N  S  I  I  Y  S  T  G  I  H  S  C  H  S  W  C  F  I  K  E  I  N  E  L  R  R  *  I  V  S  C  E  I  Y  *  L  R  L  L  F  P  F  L  F  L  F  *  Q  L  C  H  C  I  Y  S  L  L  C  T  Q  S  W  P  D  G  C  L  Y  I  N  Y  L  Q  Y  S  Y  C  K  K  Q  I  S  D  V  P  F  I  G  F  F  P  E  E  N  W  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32245" stop="32464"/>
                    <exon start="32684" stop="32903"/>
                    <exon start="33037" stop="33082"/>
                    <exon start="33162" stop="33248"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQHKKRKKLIQFSSKRGFKPYYHYHFQEPRMASEQMKPVASLLLVLNFCMYVVVLGIGGWAMNFAIDNGFVIGPGMNLPAHFSPIYFPIGNAATGFFVVFALIAGVVGVASVLSGLNHIRHWNIDSLPSAASAATIAWSLTVLAMGFAWKEIELNYRNSKLKTMEAFMIILSFTQLVYIAAIHGASSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38930" PGL_stop="33828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38930" e_stop="38618"/>
            <exon e_start="38132" e_stop="37045"/>
            <exon e_start="36929" e_stop="36834"/>
            <exon e_start="34236" e_stop="33828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38930" e_stop="38618" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38132" e_stop="37045" e_length="1088"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36929" e_stop="36834" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34236" e_stop="33828" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38930" stop="38618"/>
              <exon start="38132" stop="37950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38926" stop="38618"/>
              <exon start="38132" stop="37921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38923" stop="38618"/>
              <exon start="38132" stop="37769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38860" stop="38618"/>
              <exon start="38132" stop="37603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38857" stop="38618"/>
              <exon start="38132" stop="37676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38857" stop="38618"/>
              <exon start="38132" stop="37823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38119" stop="37402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37538" stop="37045"/>
              <exon start="36929" stop="36914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37486" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37486" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="34163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37327" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37182" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36904" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36892" stop="36834"/>
              <exon start="34236" stop="33860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36877" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34153" stop="33954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG : GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG : TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG : AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAAGTTTG</gDNA_template>
            <first_frame> F  V  *  F  S  *  K  *  R  G  P  N  T  H  L  L  L  T  L  L  H  W  Y  Y  Q  T  S  K  S  P  H  S  P  I  H  H  K  T  K  L  K  Q  E  Q  D  S  S  I  S  D  F  E  T  Q  T  K  D  P  I  S  C  K  T  E  Q  Q  *  F  H  K  T  Q  N  M  P  S  G  A  K  K  R  K  A  A  K  K  K  K  Q  V  Q  A  V  E  P  P  S  R  S  T  G  S  F  P   : G  E  E  D  L  K  R  D  D  K  E  S  D  S  E  G  S  S  P  A  S  Q  D  Y  Q  N  H  Q  N  Q  F  T  E  G  E  V  E  D  G  E  K  Q  L  D  D  S  R  D  R  S  I  E  E  N  E  F  N  G  V  K  H  E  G  K  E  V  E  I  A  G  N  E  E  G  G  L  V  Q  V  E  R  E  L  K  V  E  C  E  S  E  S  Q  K  I  S  V  E  N  A  E  I  M  I  E  S  N  P  G  G  L  Q  R  S  S  S  S  S  S  S  S  S  S  V  E  K  Y  D  V  A  D  K  N  D  V  V  V  D  D  A  P  T  V  E  L  A  K  G  I  E  S  L  P  G  K  N  S  I  M  V  D  D  A  P  V  V  E  L  V  K  E  I  E  S  L  L  D  K  N  S  I  V  V  D  D  D  A  P  A  V  G  L  V  K  D  N  E  S  L  P  D  E  Q  V  A  D  I  L  V  G  T  I  S  A  C  D  L  D  K  A  A  I  S  E  D  I  V  Q  V  T  A  S  A  S  D  A  D  N  V  I  A  S  A  V  E  S  V  V  E  E  K  G  E  E  N  L  C  V  V  D  E  K  D  T  A  S  D  T  V  V  E  N  W  K  E  N  L  G  A  I  V  D  K  A  T  I  S  E  V  L  M  E  T  G  S  E  K  R  D  E  T  A  T  A  V  S  C  N  A  S  A  I  S  S  G  N  T  L  E  S  T  D  A  K  A  F  A  I  V  E  N  E  E  K  I  E  A  P  H  S  A  P  K  I  D  A  S  V  S  A  D  V  K  E  S  P  A  R  E  C  H  G  H  Q  :  F  T  A  L  P  S  R  P  V  Q  T  T  S  W  K  S  C  C  G  L  F  E  L  F  A  G  S  N  R  *  I  E  :  N  K  S  M  K  L  V  E  W  S  S  K  H  L  E  S  *  K  L  M  T  T  F  I  L  L  N  S  V  F  A  R  G  L  V  I  E  T  Y  M  F  S  T  Y  S  L  V  *  K  S  S  *  E  L  L  V  S  L  L  L  S  W  Y  F  A  V  V  S  F  F  S  R  M  F  Y  W  C  D  V  P  A  P  Q  G  V  G  S  T  F  L  N  V  F  A  Q  D  T  W  N  C  Y  L  S  K  I  S  P  A  Y  S  Y  I  L  W  V  Q  T  *  A  S  K  L  C  Y  *  *  S  L  L  L  L  L  F  T  K  F  </first_frame>
            <second_frame>  S  F  D  F  H  R  N  R  G  D  P  I  P  I  C  Y  S  L  F  S  I  G  T  T  K  L  Q  N  P  P  I  P  Q  Y  T  T  K  L  S  *  N  K  N  K  I  L  Q  F  Q  I  L  K  H  K  Q  K  I  P  F  L  A  K  Q  S  N  S  S  S  I  K  P  K  T  C  L  Q  V  L  R  S  E  K  L  L  R  K  R  S  R  F  K  Q  *  N  L  L  L  E  V  P  V  L  F  L  :  V  R  R  I  *  S  V  M  I  K  R  V  T  V  R  V  V  P  L  H  L  K  I  I  R  I  T  K  T  S  L  L  K  E  R  L  K  M  E  R  S  N  W  M  I  H  V  I  G  Q  L  K  K  M  N  S  M  G  *  N  M  K  A  R  K  W  K  L  L  E  M  K  K  E  V  L  F  R  L  K  G  N  *  R  L  S  V  N  L  R  A  R  R  *  V  L  R  M  L  K  S  *  L  N  P  T  Q  E  G  C  K  G  V  P  V  A  A  A  V  A  A  Q  *  K  N  M  M  L  L  I  R  M  M  L  W  L  M  M  L  Q  L  L  N  *  R  K  V  L  N  L  C  L  V  R  I  V  L  W  L  M  M  L  Q  L  L  N  *  *  K  R  L  N  L  C  L  I  R  I  V  L  W  L  M  M  M  L  Q  L  L  D  *  *  K  I  M  N  L  C  L  M  N  K  L  L  I  S  L  W  E  Q  S  L  H  V  I  W  I  R  L  Q  Y  Q  K  T  *  F  K  S  Q  Q  V  L  Q  M  L  I  M  *  L  H  L  L  L  N  R  W  W  R  R  K  G  K  K  I  C  V  L  L  M  R  K  I  Q  L  Q  I  L  L  W  K  I  G  R  K  I  W  V  L  *  L  T  K  P  L  F  Q  K  F  *  W  R  Q  D  R  R  K  E  M  K  Q  L  L  Q  C  H  A  M  P  V  Q  Y  Q  V  V  I  L  *  K  V  Q  M  Q  R  L  L  R  S  *  K  M  K  K  K  *  R  H  P  T  V  L  L  K  L  M  L  V  F  L  Q  M  *  K  N  L  Q  L  E  N  A  M  A  I  S :   L  Q  R  Y  L  H  D  Q  C  K  Q  L  P  G  K  V  A  V  A  C  L  S  C  L  Q  D  Q  I  D  E  S  R :   I  R  A  *  S  W  L  N  G  V  A  N  I  W  N  P  R  S  *  *  L  P  S  F  S  *  T  V  S  L  Q  G  V  L  L  *  K  L  I  C  S  V  L  I  V  *  F  E  K  A  A  E  N  F  S  S  L  C  C  F  P  G  I  L  Q  W  L  V  S  F  L  E  C  S  I  G  V  M  Y  L  L  L  R  E  L  E  A  P  F  L  M  F  L  H  R  T  L  G  I  V  I  Y  P  K  F  H  Q  H  I  V  I  S  F  G  F  R  H  K  L  Q  S  F  V  I  N  S  H  S  F  Y  F  S  S  L  S  L </second_frame>
            <third_frame>   R  L  I  F  I  E  I  E  G  T  Q  Y  P  S  V  T  H  S  S  P  L  V  L  P  N  F  K  I  P  P  F  P  N  T  P  Q  N  *  A  K  T  R  T  R  F  F  N  F  R  F  *  N  T  N  K  R  S  H  F  L  Q  N  R  A  T  V  V  P  *  N  P  K  H  A  F  R  C  *  E  A  K  S  C  *  E  K  E  A  G  S  S  S  R  T  S  F  S  K  Y  R  F  F  S  W :   *  G  G  S  E  A  *  *  *  R  E  *  Q  *  G  *  F  P  C  I  S  R  L  S  E  S  P  K  P  V  Y  *  R  R  G  *  R  W  R  E  A  I  G  *  F  T  *  S  V  N  *  R  K  *  I  Q  W  G  E  T  *  R  Q  G  S  G  N  C  W  K  *  R  R  R  S  C  S  G  *  K  G  I  E  G  *  V  *  I  *  E  P  E  D  K  C  *  E  C  *  N  H  D  *  I  Q  P  R  R  V  A  K  E  F  Q  *  Q  Q  Q  *  Q  L  S  R  K  I  *  C  C  *  *  E  *  C  C  G  *  *  C  S  N  C  *  I  S  E  R  Y  *  I  F  A  W  *  E  *  Y  Y  G  *  *  C  S  S  C  *  I  S  E  R  D  *  I  F  A  *  *  E  *  Y  C  G  *  *  *  C  S  S  C  W  I  S  E  R  *  *  I  F  A  *  *  T  S  C  *  Y  P  C  G  N  N  L  C  M  *  F  G  *  G  C  N  I  R  R  H  S  S  S  H  S  K  C  F  R  C  *  *  C  D  C  I  C  C  *  I  G  G  G  G  E  R  G  R  K  S  V  C  C  *  *  E  R  Y  S  F  R  Y  C  C  G  K  L  E  G  K  F  G  C  Y  S  *  Q  S  H  Y  F  R  S  S  D  G  D  R  I  G  E  K  R  *  N  S  Y  C  S  V  M  Q  C  Q  C  N  I  K  W  *  Y  F  R  K  Y  R  C  K  G  F  C  D  R  R  K  *  R  K  N  R  G  T  P  Q  C  S  *  N  *  C  *  C  F  C  R  C  E  R  I  S  S  S  R  M  P  W  P  S   : V  Y  S  V  T  F  T  T  S  A  N  N  F  L  E  K  L  L  W  L  V  *  V  V  C  R  I  K  *  M  N  R   : E  *  E  H  E  A  G  *  M  E  *  Q  T  F  G  I  L  E  V  D  D  Y  L  H  S  L  E  Q  C  L  C  K  G  S  C  Y  R  N  L  Y  V  Q  Y  L  *  F  S  L  K  K  Q  L  R  T  S  R  L  F  A  A  F  L  V  F  C  S  G  *  F  L  F  S  N  V  L  L  V  *  C  T  C  S  S  G  S  W  K  H  L  S  *  C  F  C  T  G  H  L  E  L  L  F  I  Q  N  F  T  S  I  *  L  Y  P  L  G  S  D  I  S  F  K  A  L  L  L  I  V  T  P  F  T  S  L  H  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38729" stop="38618"/>
                    <exon start="38132" stop="37045"/>
                    <exon start="36929" stop="36840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHKTQNMPSGAKKRKAAKKKKQVQAVEPPSRSTGSFPGEEDLKRDDKESDSEGSSPASQDYQNHQNQFTEGEVEDGEKQLDDSRDRSIEENEFNGVKHEGKEVEIAGNEEGGLVQVERELKVECESESQKISVENAEIMIESNPGGLQRSSSSSSSSSSVEKYDVADKNDVVVDDAPTVELAKGIESLPGKNSIMVDDAPVVELVKEIESLLDKNSIVVDDDAPAVGLVKDNESLPDEQVADILVGTISACDLDKAAISEDIVQVTASASDADNVIASAVESVVEEKGEENLCVVDEKDTASDTVVENWKENLGAIVDKATISEVLMETGSEKRDETATAVSCNASAISSGNTLESTDAKAFAIVENEEKIEAPHSAPKIDASVSADVKESPARECHGHQFTALPSRPVQTTSWKSCCGLFELFAGSNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34097" stop="33828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKAAENFSSLCCFPGILQWLVSFLECSIGVMYLLLRELEAPFLMFLHRTLGIVIYPKFHQHIVISFGFRHKLQSFVINSHSFYFSSLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38817" e_stop="38664"/>
            <exon e_start="38132" e_stop="37045"/>
            <exon e_start="36929" e_stop="36834"/>
            <exon e_start="34236" e_stop="33828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38817" e_stop="38664" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38663" i_stop="38133" i_length="531"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38132" e_stop="37045" e_length="1088"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36929" e_stop="36834" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34236" e_stop="33828" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38817" stop="38664"/>
              <exon start="38132" stop="37697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38119" stop="37402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37538" stop="37045"/>
              <exon start="36929" stop="36914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37486" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37486" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="34163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37327" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37182" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36904" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36892" stop="36834"/>
              <exon start="34236" stop="33860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36877" stop="36834"/>
              <exon start="34236" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34153" stop="33954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAG : GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG : TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG : AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAAGTTTG</gDNA_template>
            <first_frame> *  A  K  T  R  T  R  F  F  N  F  R  F  *  N  T  N  K  R  S  H  F  L  Q  N  R  A  T  V  V  P  *  N  P  K  H  A  F  R  C  *  E  A  K  S  C  *  E  K  E  A   : G  E  E  D  L  K  R  D  D  K  E  S  D  S  E  G  S  S  P  A  S  Q  D  Y  Q  N  H  Q  N  Q  F  T  E  G  E  V  E  D  G  E  K  Q  L  D  D  S  R  D  R  S  I  E  E  N  E  F  N  G  V  K  H  E  G  K  E  V  E  I  A  G  N  E  E  G  G  L  V  Q  V  E  R  E  L  K  V  E  C  E  S  E  S  Q  K  I  S  V  E  N  A  E  I  M  I  E  S  N  P  G  G  L  Q  R  S  S  S  S  S  S  S  S  S  S  V  E  K  Y  D  V  A  D  K  N  D  V  V  V  D  D  A  P  T  V  E  L  A  K  G  I  E  S  L  P  G  K  N  S  I  M  V  D  D  A  P  V  V  E  L  V  K  E  I  E  S  L  L  D  K  N  S  I  V  V  D  D  D  A  P  A  V  G  L  V  K  D  N  E  S  L  P  D  E  Q  V  A  D  I  L  V  G  T  I  S  A  C  D  L  D  K  A  A  I  S  E  D  I  V  Q  V  T  A  S  A  S  D  A  D  N  V  I  A  S  A  V  E  S  V  V  E  E  K  G  E  E  N  L  C  V  V  D  E  K  D  T  A  S  D  T  V  V  E  N  W  K  E  N  L  G  A  I  V  D  K  A  T  I  S  E  V  L  M  E  T  G  S  E  K  R  D  E  T  A  T  A  V  S  C  N  A  S  A  I  S  S  G  N  T  L  E  S  T  D  A  K  A  F  A  I  V  E  N  E  E  K  I  E  A  P  H  S  A  P  K  I  D  A  S  V  S  A  D  V  K  E  S  P  A  R  E  C  H  G  H  Q  :  F  T  A  L  P  S  R  P  V  Q  T  T  S  W  K  S  C  C  G  L  F  E  L  F  A  G  S  N  R  *  I  E  :  N  K  S  M  K  L  V  E  W  S  S  K  H  L  E  S  *  K  L  M  T  T  F  I  L  L  N  S  V  F  A  R  G  L  V  I  E  T  Y  M  F  S  T  Y  S  L  V  *  K  S  S  *  E  L  L  V  S  L  L  L  S  W  Y  F  A  V  V  S  F  F  S  R  M  F  Y  W  C  D  V  P  A  P  Q  G  V  G  S  T  F  L  N  V  F  A  Q  D  T  W  N  C  Y  L  S  K  I  S  P  A  Y  S  Y  I  L  W  V  Q  T  *  A  S  K  L  C  Y  *  *  S  L  L  L  L  L  F  T  K  F  </first_frame>
            <second_frame>  K  L  K  Q  E  Q  D  S  S  I  S  D  F  E  T  Q  T  K  D  P  I  S  C  K  T  E  Q  Q  *  F  H  K  T  Q  N  M  P  S  G  A  K  K  R  K  A  A  K  K  K  K  Q  :  V  R  R  I  *  S  V  M  I  K  R  V  T  V  R  V  V  P  L  H  L  K  I  I  R  I  T  K  T  S  L  L  K  E  R  L  K  M  E  R  S  N  W  M  I  H  V  I  G  Q  L  K  K  M  N  S  M  G  *  N  M  K  A  R  K  W  K  L  L  E  M  K  K  E  V  L  F  R  L  K  G  N  *  R  L  S  V  N  L  R  A  R  R  *  V  L  R  M  L  K  S  *  L  N  P  T  Q  E  G  C  K  G  V  P  V  A  A  A  V  A  A  Q  *  K  N  M  M  L  L  I  R  M  M  L  W  L  M  M  L  Q  L  L  N  *  R  K  V  L  N  L  C  L  V  R  I  V  L  W  L  M  M  L  Q  L  L  N  *  *  K  R  L  N  L  C  L  I  R  I  V  L  W  L  M  M  M  L  Q  L  L  D  *  *  K  I  M  N  L  C  L  M  N  K  L  L  I  S  L  W  E  Q  S  L  H  V  I  W  I  R  L  Q  Y  Q  K  T  *  F  K  S  Q  Q  V  L  Q  M  L  I  M  *  L  H  L  L  L  N  R  W  W  R  R  K  G  K  K  I  C  V  L  L  M  R  K  I  Q  L  Q  I  L  L  W  K  I  G  R  K  I  W  V  L  *  L  T  K  P  L  F  Q  K  F  *  W  R  Q  D  R  R  K  E  M  K  Q  L  L  Q  C  H  A  M  P  V  Q  Y  Q  V  V  I  L  *  K  V  Q  M  Q  R  L  L  R  S  *  K  M  K  K  K  *  R  H  P  T  V  L  L  K  L  M  L  V  F  L  Q  M  *  K  N  L  Q  L  E  N  A  M  A  I  S :   L  Q  R  Y  L  H  D  Q  C  K  Q  L  P  G  K  V  A  V  A  C  L  S  C  L  Q  D  Q  I  D  E  S  R :   I  R  A  *  S  W  L  N  G  V  A  N  I  W  N  P  R  S  *  *  L  P  S  F  S  *  T  V  S  L  Q  G  V  L  L  *  K  L  I  C  S  V  L  I  V  *  F  E  K  A  A  E  N  F  S  S  L  C  C  F  P  G  I  L  Q  W  L  V  S  F  L  E  C  S  I  G  V  M  Y  L  L  L  R  E  L  E  A  P  F  L  M  F  L  H  R  T  L  G  I  V  I  Y  P  K  F  H  Q  H  I  V  I  S  F  G  F  R  H  K  L  Q  S  F  V  I  N  S  H  S  F  Y  F  S  S  L  S  L </second_frame>
            <third_frame>   S  *  N  K  N  K  I  L  Q  F  Q  I  L  K  H  K  Q  K  I  P  F  L  A  K  Q  S  N  S  S  S  I  K  P  K  T  C  L  Q  V  L  R  S  E  K  L  L  R  K  R  S  R :   *  G  G  S  E  A  *  *  *  R  E  *  Q  *  G  *  F  P  C  I  S  R  L  S  E  S  P  K  P  V  Y  *  R  R  G  *  R  W  R  E  A  I  G  *  F  T  *  S  V  N  *  R  K  *  I  Q  W  G  E  T  *  R  Q  G  S  G  N  C  W  K  *  R  R  R  S  C  S  G  *  K  G  I  E  G  *  V  *  I  *  E  P  E  D  K  C  *  E  C  *  N  H  D  *  I  Q  P  R  R  V  A  K  E  F  Q  *  Q  Q  Q  *  Q  L  S  R  K  I  *  C  C  *  *  E  *  C  C  G  *  *  C  S  N  C  *  I  S  E  R  Y  *  I  F  A  W  *  E  *  Y  Y  G  *  *  C  S  S  C  *  I  S  E  R  D  *  I  F  A  *  *  E  *  Y  C  G  *  *  *  C  S  S  C  W  I  S  E  R  *  *  I  F  A  *  *  T  S  C  *  Y  P  C  G  N  N  L  C  M  *  F  G  *  G  C  N  I  R  R  H  S  S  S  H  S  K  C  F  R  C  *  *  C  D  C  I  C  C  *  I  G  G  G  G  E  R  G  R  K  S  V  C  C  *  *  E  R  Y  S  F  R  Y  C  C  G  K  L  E  G  K  F  G  C  Y  S  *  Q  S  H  Y  F  R  S  S  D  G  D  R  I  G  E  K  R  *  N  S  Y  C  S  V  M  Q  C  Q  C  N  I  K  W  *  Y  F  R  K  Y  R  C  K  G  F  C  D  R  R  K  *  R  K  N  R  G  T  P  Q  C  S  *  N  *  C  *  C  F  C  R  C  E  R  I  S  S  S  R  M  P  W  P  S   : V  Y  S  V  T  F  T  T  S  A  N  N  F  L  E  K  L  L  W  L  V  *  V  V  C  R  I  K  *  M  N  R   : E  *  E  H  E  A  G  *  M  E  *  Q  T  F  G  I  L  E  V  D  D  Y  L  H  S  L  E  Q  C  L  C  K  G  S  C  Y  R  N  L  Y  V  Q  Y  L  *  F  S  L  K  K  Q  L  R  T  S  R  L  F  A  A  F  L  V  F  C  S  G  *  F  L  F  S  N  V  L  L  V  *  C  T  C  S  S  G  S  W  K  H  L  S  *  C  F  C  T  G  H  L  E  L  L  F  I  Q  N  F  T  S  I  *  L  Y  P  L  G  S  D  I  S  F  K  A  L  L  L  I  V  T  P  F  T  S  L  H  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38676" stop="38664"/>
                    <exon start="38132" stop="37045"/>
                    <exon start="36929" stop="36840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEAGEEDLKRDDKESDSEGSSPASQDYQNHQNQFTEGEVEDGEKQLDDSRDRSIEENEFNGVKHEGKEVEIAGNEEGGLVQVERELKVECESESQKISVENAEIMIESNPGGLQRSSSSSSSSSSVEKYDVADKNDVVVDDAPTVELAKGIESLPGKNSIMVDDAPVVELVKEIESLLDKNSIVVDDDAPAVGLVKDNESLPDEQVADILVGTISACDLDKAAISEDIVQVTASASDADNVIASAVESVVEEKGEENLCVVDEKDTASDTVVENWKENLGAIVDKATISEVLMETGSEKRDETATAVSCNASAISSGNTLESTDAKAFAIVENEEKIEAPHSAPKIDASVSADVKESPARECHGHQFTALPSRPVQTTSWKSCCGLFELFAGSNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34097" stop="33828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKAAENFSSLCCFPGILQWLVSFLECSIGVMYLLLRELEAPFLMFLHRTLGIVIYPKFHQHIVISFGFRHKLQSFVINSHSFYFSSLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38930" e_stop="38618"/>
            <exon e_start="38132" e_stop="37045"/>
            <exon e_start="36929" e_stop="36834"/>
            <exon e_start="35953" e_stop="35657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.955" e_score="0.990"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38930" e_stop="38618" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38132" e_stop="37045" e_length="1088"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="36929" e_stop="36834" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.955">
            <gDNA_intron_boundary i_start="36833" i_stop="35954" i_length="880"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="35953" e_stop="35657" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38930" stop="38618"/>
              <exon start="38132" stop="37950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38926" stop="38618"/>
              <exon start="38132" stop="37921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38923" stop="38618"/>
              <exon start="38132" stop="37769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38860" stop="38618"/>
              <exon start="38132" stop="37603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38857" stop="38618"/>
              <exon start="38132" stop="37676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38857" stop="38618"/>
              <exon start="38132" stop="37823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38119" stop="37402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37538" stop="37045"/>
              <exon start="36929" stop="36914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37392" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="35953" stop="35657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG : GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG : TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG : AGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTT</gDNA_template>
            <first_frame> F  V  *  F  S  *  K  *  R  G  P  N  T  H  L  L  L  T  L  L  H  W  Y  Y  Q  T  S  K  S  P  H  S  P  I  H  H  K  T  K  L  K  Q  E  Q  D  S  S  I  S  D  F  E  T  Q  T  K  D  P  I  S  C  K  T  E  Q  Q  *  F  H  K  T  Q  N  M  P  S  G  A  K  K  R  K  A  A  K  K  K  K  Q  V  Q  A  V  E  P  P  S  R  S  T  G  S  F  P   : G  E  E  D  L  K  R  D  D  K  E  S  D  S  E  G  S  S  P  A  S  Q  D  Y  Q  N  H  Q  N  Q  F  T  E  G  E  V  E  D  G  E  K  Q  L  D  D  S  R  D  R  S  I  E  E  N  E  F  N  G  V  K  H  E  G  K  E  V  E  I  A  G  N  E  E  G  G  L  V  Q  V  E  R  E  L  K  V  E  C  E  S  E  S  Q  K  I  S  V  E  N  A  E  I  M  I  E  S  N  P  G  G  L  Q  R  S  S  S  S  S  S  S  S  S  S  V  E  K  Y  D  V  A  D  K  N  D  V  V  V  D  D  A  P  T  V  E  L  A  K  G  I  E  S  L  P  G  K  N  S  I  M  V  D  D  A  P  V  V  E  L  V  K  E  I  E  S  L  L  D  K  N  S  I  V  V  D  D  D  A  P  A  V  G  L  V  K  D  N  E  S  L  P  D  E  Q  V  A  D  I  L  V  G  T  I  S  A  C  D  L  D  K  A  A  I  S  E  D  I  V  Q  V  T  A  S  A  S  D  A  D  N  V  I  A  S  A  V  E  S  V  V  E  E  K  G  E  E  N  L  C  V  V  D  E  K  D  T  A  S  D  T  V  V  E  N  W  K  E  N  L  G  A  I  V  D  K  A  T  I  S  E  V  L  M  E  T  G  S  E  K  R  D  E  T  A  T  A  V  S  C  N  A  S  A  I  S  S  G  N  T  L  E  S  T  D  A  K  A  F  A  I  V  E  N  E  E  K  I  E  A  P  H  S  A  P  K  I  D  A  S  V  S  A  D  V  K  E  S  P  A  R  E  C  H  G  H  Q  :  F  T  A  L  P  S  R  P  V  Q  T  T  S  W  K  S  C  C  G  L  F  E  L  F  A  G  S  N  R  *  I  E  :  R  Q  G  G  H  *  D  V  F  *  L  D  C  *  S  L  C  L  Y  R  D  V  Y  V  G  R  N  Y  R  E  H  L  R  L  K  T  S  S  F  *  T  L  K  F  V  S  N  G  A  N  L  *  F  G  I  E  G  L  F  S  L  L  Y  I  L  V  G  F  D  L  Y  C  C  L  C  P  I  L  *  F  *  S  L  *  K  E  E  H  L  Y  I  L  K  Q  F  N  Y  K  L </first_frame>
            <second_frame>  S  F  D  F  H  R  N  R  G  D  P  I  P  I  C  Y  S  L  F  S  I  G  T  T  K  L  Q  N  P  P  I  P  Q  Y  T  T  K  L  S  *  N  K  N  K  I  L  Q  F  Q  I  L  K  H  K  Q  K  I  P  F  L  A  K  Q  S  N  S  S  S  I  K  P  K  T  C  L  Q  V  L  R  S  E  K  L  L  R  K  R  S  R  F  K  Q  *  N  L  L  L  E  V  P  V  L  F  L  :  V  R  R  I  *  S  V  M  I  K  R  V  T  V  R  V  V  P  L  H  L  K  I  I  R  I  T  K  T  S  L  L  K  E  R  L  K  M  E  R  S  N  W  M  I  H  V  I  G  Q  L  K  K  M  N  S  M  G  *  N  M  K  A  R  K  W  K  L  L  E  M  K  K  E  V  L  F  R  L  K  G  N  *  R  L  S  V  N  L  R  A  R  R  *  V  L  R  M  L  K  S  *  L  N  P  T  Q  E  G  C  K  G  V  P  V  A  A  A  V  A  A  Q  *  K  N  M  M  L  L  I  R  M  M  L  W  L  M  M  L  Q  L  L  N  *  R  K  V  L  N  L  C  L  V  R  I  V  L  W  L  M  M  L  Q  L  L  N  *  *  K  R  L  N  L  C  L  I  R  I  V  L  W  L  M  M  M  L  Q  L  L  D  *  *  K  I  M  N  L  C  L  M  N  K  L  L  I  S  L  W  E  Q  S  L  H  V  I  W  I  R  L  Q  Y  Q  K  T  *  F  K  S  Q  Q  V  L  Q  M  L  I  M  *  L  H  L  L  L  N  R  W  W  R  R  K  G  K  K  I  C  V  L  L  M  R  K  I  Q  L  Q  I  L  L  W  K  I  G  R  K  I  W  V  L  *  L  T  K  P  L  F  Q  K  F  *  W  R  Q  D  R  R  K  E  M  K  Q  L  L  Q  C  H  A  M  P  V  Q  Y  Q  V  V  I  L  *  K  V  Q  M  Q  R  L  L  R  S  *  K  M  K  K  K  *  R  H  P  T  V  L  L  K  L  M  L  V  F  L  Q  M  *  K  N  L  Q  L  E  N  A  M  A  I  S :   L  Q  R  Y  L  H  D  Q  C  K  Q  L  P  G  K  V  A  V  A  C  L  S  C  L  Q  D  Q  I  D  E  S  R :   G  R  E  V  T  E  M  C  F  S  W  I  A  R  V  F  V  C  I  E  T  C  M  L  E  E  I  I  E  N  I  F  G  *  K  P  Q  V  F  K  H  *  N  S  F  Q  M  E  Q  I  C  S  L  E  S  R  D  C  F  H  C  C  I  S  *  *  G  L  I  Y  I  V  A  S  V  P  F  Y  D  F  S  P  Y  E  K  K  S  T  F  I  Y  *  N  N  L  T  I  N   </second_frame>
            <third_frame>   R  L  I  F  I  E  I  E  G  T  Q  Y  P  S  V  T  H  S  S  P  L  V  L  P  N  F  K  I  P  P  F  P  N  T  P  Q  N  *  A  K  T  R  T  R  F  F  N  F  R  F  *  N  T  N  K  R  S  H  F  L  Q  N  R  A  T  V  V  P  *  N  P  K  H  A  F  R  C  *  E  A  K  S  C  *  E  K  E  A  G  S  S  S  R  T  S  F  S  K  Y  R  F  F  S  W :   *  G  G  S  E  A  *  *  *  R  E  *  Q  *  G  *  F  P  C  I  S  R  L  S  E  S  P  K  P  V  Y  *  R  R  G  *  R  W  R  E  A  I  G  *  F  T  *  S  V  N  *  R  K  *  I  Q  W  G  E  T  *  R  Q  G  S  G  N  C  W  K  *  R  R  R  S  C  S  G  *  K  G  I  E  G  *  V  *  I  *  E  P  E  D  K  C  *  E  C  *  N  H  D  *  I  Q  P  R  R  V  A  K  E  F  Q  *  Q  Q  Q  *  Q  L  S  R  K  I  *  C  C  *  *  E  *  C  C  G  *  *  C  S  N  C  *  I  S  E  R  Y  *  I  F  A  W  *  E  *  Y  Y  G  *  *  C  S  S  C  *  I  S  E  R  D  *  I  F  A  *  *  E  *  Y  C  G  *  *  *  C  S  S  C  W  I  S  E  R  *  *  I  F  A  *  *  T  S  C  *  Y  P  C  G  N  N  L  C  M  *  F  G  *  G  C  N  I  R  R  H  S  S  S  H  S  K  C  F  R  C  *  *  C  D  C  I  C  C  *  I  G  G  G  G  E  R  G  R  K  S  V  C  C  *  *  E  R  Y  S  F  R  Y  C  C  G  K  L  E  G  K  F  G  C  Y  S  *  Q  S  H  Y  F  R  S  S  D  G  D  R  I  G  E  K  R  *  N  S  Y  C  S  V  M  Q  C  Q  C  N  I  K  W  *  Y  F  R  K  Y  R  C  K  G  F  C  D  R  R  K  *  R  K  N  R  G  T  P  Q  C  S  *  N  *  C  *  C  F  C  R  C  E  R  I  S  S  S  R  M  P  W  P  S   : V  Y  S  V  T  F  T  T  S  A  N  N  F  L  E  K  L  L  W  L  V  *  V  V  C  R  I  K  *  M  N  R   : E  A  G  R  S  L  R  C  V  L  V  G  L  L  E  S  L  S  V  S  R  R  V  C  W  K  K  L  *  R  T  S  S  A  E  N  L  K  F  L  N  I  E  I  R  F  K  W  S  K  S  V  V  W  N  R  G  I  V  F  T  V  V  Y  L  S  R  V  *  F  I  L  L  P  L  S  H  F  M  I  L  V  L  M  K  R  R  A  P  L  Y  T  E  T  I  *  L  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38729" stop="38618"/>
                    <exon start="38132" stop="37045"/>
                    <exon start="36929" stop="36840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHKTQNMPSGAKKRKAAKKKKQVQAVEPPSRSTGSFPGEEDLKRDDKESDSEGSSPASQDYQNHQNQFTEGEVEDGEKQLDDSRDRSIEENEFNGVKHEGKEVEIAGNEEGGLVQVERELKVECESESQKISVENAEIMIESNPGGLQRSSSSSSSSSSVEKYDVADKNDVVVDDAPTVELAKGIESLPGKNSIMVDDAPVVELVKEIESLLDKNSIVVDDDAPAVGLVKDNESLPDEQVADILVGTISACDLDKAAISEDIVQVTASASDADNVIASAVESVVEEKGEENLCVVDEKDTASDTVVENWKENLGAIVDKATISEVLMETGSEKRDETATAVSCNASAISSGNTLESTDAKAFAIVENEEKIEAPHSAPKIDASVSADVKESPARECHGHQFTALPSRPVQTTSWKSCCGLFELFAGSNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34241" e_stop="33863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="34241" e_stop="33863" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34241" stop="33863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34153" stop="33954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTA</gDNA_template>
            <first_frame> C  R  I  R  A  *  S  W  L  N  G  V  A  N  I  W  N  P  R  S  *  *  L  P  S  F  S  *  T  V  S  L  Q  G  V  L  L  *  K  L  I  C  S  V  L  I  V  *  F  E  K  A  A  E  N  F  S  S  L  C  C  F  P  G  I  L  Q  W  L  V  S  F  L  E  C  S  I  G  V  M  Y  L  L  L  R  E  L  E  A  P  F  L  M  F  L  H  R  T  L  G  I  V  I  Y  P  K  F  H  Q  H  I  V  I  S  F  G  F  R  H  K  L  Q  S  F  V  I  </first_frame>
            <second_frame>  A  E  *  E  H  E  A  G  *  M  E  *  Q  T  F  G  I  L  E  V  D  D  Y  L  H  S  L  E  Q  C  L  C  K  G  S  C  Y  R  N  L  Y  V  Q  Y  L  *  F  S  L  K  K  Q  L  R  T  S  R  L  F  A  A  F  L  V  F  C  S  G  *  F  L  F  S  N  V  L  L  V  *  C  T  C  S  S  G  S  W  K  H  L  S  *  C  F  C  T  G  H  L  E  L  L  F  I  Q  N  F  T  S  I  *  L  Y  P  L  G  S  D  I  S  F  K  A  L  L  L </second_frame>
            <third_frame>   Q  N  K  S  M  K  L  V  E  W  S  S  K  H  L  E  S  *  K  L  M  T  T  F  I  L  L  N  S  V  F  A  R  G  L  V  I  E  T  Y  M  F  S  T  Y  S  L  V  *  K  S  S  *  E  L  L  V  S  L  L  L  S  W  Y  F  A  V  V  S  F  F  S  R  M  F  Y  W  C  D  V  P  A  P  Q  G  V  G  S  T  F  L  N  V  F  A  Q  D  T  W  N  C  Y  L  S  K  I  S  P  A  Y  S  Y  I  L  W  V  Q  T  *  A  S  K  L  C  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34097" stop="33864"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKAAENFSSLCCFPGILQWLVSFLECSIGVMYLLLRELEAPFLMFLHRTLGIVIYPKFHQHIVISFGFRHKLQSFVI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34080" stop="33883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELLVSLLLSWYFAVVSFFSRMFYWCDVPAPQGVGSTFLNVFAQDTWNCYLSKISPAYSYILWVQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49047" PGL_stop="61339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49047" e_stop="49082"/>
            <exon e_start="54840" e_stop="54962"/>
            <exon e_start="56590" e_stop="56655"/>
            <exon e_start="56994" e_stop="57143"/>
            <exon e_start="58064" e_stop="58165"/>
            <exon e_start="58283" e_stop="58480"/>
            <exon e_start="58584" e_stop="58646"/>
            <exon e_start="58734" e_stop="58838"/>
            <exon e_start="59054" e_stop="59128"/>
            <exon e_start="59711" e_stop="60083"/>
            <exon e_start="61010" e_stop="61021"/>
            <exon e_start="61316" e_stop="61339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.312" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.781" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.870" e_score="0.990"/>
          <exon-intron don_prob="0.984" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.982"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.818" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.774" e_score="0.833"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49047" e_stop="49082" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="49083" i_stop="54839" i_length="5757"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="54840" e_stop="54962" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.312" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54963" i_stop="56589" i_length="1627"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56590" e_stop="56655" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="56656" i_stop="56993" i_length="338"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="56994" e_stop="57143" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57144" i_stop="58063" i_length="920"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58064" e_stop="58165" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.781" acc_prob="0.885">
            <gDNA_intron_boundary i_start="58166" i_stop="58282" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="58283" e_stop="58480" e_length="198"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.870">
            <gDNA_intron_boundary i_start="58481" i_stop="58583" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="58584" e_stop="58646" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.983">
            <gDNA_intron_boundary i_start="58647" i_stop="58733" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="58734" e_stop="58838" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="59054" e_stop="59128" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="59711" e_stop="60083" e_length="373"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.818">
            <gDNA_intron_boundary i_start="60084" i_stop="61009" i_length="926"/>
          </intron>
          <exon e_serial="11" e_score="0.833">
            <gDNA_exon_boundary e_start="61010" e_stop="61021" e_length="12"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="61022" i_stop="61315" i_length="294"/>
          </intron>
          <exon e_serial="12" e_score="0.625">
            <gDNA_exon_boundary e_start="61316" e_stop="61339" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="49082"/>
              <exon start="54840" stop="54962"/>
              <exon start="56590" stop="56655"/>
              <exon start="56994" stop="57143"/>
              <exon start="58064" stop="58165"/>
              <exon start="58283" stop="58480"/>
              <exon start="58584" stop="58646"/>
              <exon start="58734" stop="58789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49048" stop="49082"/>
              <exon start="54840" stop="54962"/>
              <exon start="56590" stop="56655"/>
              <exon start="56994" stop="57143"/>
              <exon start="58064" stop="58143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58768" stop="58838"/>
              <exon start="59054" stop="59128"/>
              <exon start="59711" stop="60083"/>
              <exon start="61010" stop="61021"/>
              <exon start="61316" stop="61339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58768" stop="58838"/>
              <exon start="59054" stop="59128"/>
              <exon start="59711" stop="59898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58768" stop="58838"/>
              <exon start="59054" stop="59128"/>
              <exon start="59711" stop="59897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAG : GCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGG : GATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAA : CCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTTGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAGCATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAG : GTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGCGGCAAGAGGCGGAGATACAG : GCAACCGAAGTTTCTAGAAGACAAGCTCGGGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACTCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATG : GTTGAAGCAGAAAAGCTTTATCATGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAG : ATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAG : GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAG : GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTCCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACGAAAAAT : ACAACAAAAAAG : GGATCAAATAAAACGAAGAAGGGA</gDNA_template>
            <first_frame> S  K  L  R  E  Q  V  A  K  Q  Q  Q  :  A  V  I  K  Q  F  S  A  T  G  Y  E  S  S  D  V  M  V  I  D  E  M  E  M  Q  L  H  H  Q  L  D  K  L  Y  K  S  T  R  E  K  R  :  D  F  Q  K  E  I  V  K  A  A  E  T  F  T  A  I  G  Y  K  H  I  E  :  P  G  T  K  L  S  E  D  C  C  K  Y  G  V  E  N  P  N  D  E  V  L  A  K  A  A  S  I  Y  G  D  A  R  K  H  A  E  K  E  V  E  D  L  N  K  L  F  F  S  Q  :  V  L  E  P  L  R  A  M  V  A  G  S  P  L  E  D  A  R  H  L  A  Q  R  Y  S  K  M  R  Q  E  A  E  I  Q  :  A  T  E  V  S  R  R  Q  A  R  V  R  E  A  P  I  P  E  N  V  A  K  L  H  S  A  E  T  K  M  Q  E  L  K  A  N  M  T  V  L  G  K  E  A  A  A  A  L  A  A  V  E  S  Q  Q  E  R  L  T  F  Q  R  L  V  A  M  :  V  E  A  E  K  L  Y  H  E  R  V  A  V  I  L  G  N  I  E  A  E  :  I  V  S  E  K  Q  R  K  E  A  A  P  P  V  A  T  L  P  V  N  P  P  A  Q  I  P  E  K  T  K  Y  F  L  A  E  :  A  I  H  S  F  E  A  E  S  E  K  E  L  S  L  S  V  G  D  Y  V  V  V  R  K  :  V  T  Q  S  G  W  S  E  G  E  C  Q  G  R  A  G  W  F  P  S  E  Y  V  E  K  R  Q  R  V  P  T  S  N  G  A  T  E  A  Y  *  K  D  G  D  F  L  L  L  V  F  V  E  Q  L  P  V  H  P  F  I  H  A  R  A  *  S  *  V  C  N  I  F  I  L  V  L  L  G  L  F  W  T  V  N  A  F  G  L  F  P  F  P  F  V  F  T  P  A  *  T  C  H  H  *  W  I  I  A  E  M  H  L  V  K  Y  P  L  P  L  P  A  N  E  K   : Y  N  K  K   : G  I  K  *  N  E  E  G  </first_frame>
            <second_frame>  V  S  S  E  N  K  S  L  N  S  N  R :   Q  S  S  S  S  L  V  Q  L  V  M  K  V  Q  M  L  W  S  S  M  K  W  K  C  N  C  I  I  N  W  T  S  C  I  S  L  P  G  R  K  G :   I  F  R  K  R  L  L  R  Q  L  K  H  L  Q  L  *  D  T  S  I  *  N :   Q  E  L  N  Y  Q  K  I  A  A  N  M  E  L  K  I  P  M  T  R  C  *  L  R  L  L  L  F  T  A  M  L  V  S  M  Q  R  R  R  L  K  I  *  I  N  Y  S  S  V  R :   Y  W  N  H  *  E  L  W  *  L  V  L  P  *  R  M  L  V  I  *  L  S  A  T  V  K  C  G  K  R  R  R  Y  R :   Q  P  K  F  L  E  D  K  L  G  *  G  K  L  P  S  R  R  M  W  Q  S  C  T  Q  Q  K  L  K  C  R  N  S  K  P  T  *  Q  Y  S  V  K  K  Q  Q  Q  H  *  L  L  *  N  H  S  R  R  G  L  H  F  R  G  L  L  Q  W :   L  K  Q  K  S  F  I  M  R  E  L  L  L  F  W  V  I  L  K  L  R :   *  F  L  K  S  S  E  K  R  L  L  L  L  *  P  H  F  L  L  T  L  R  P  K  Y  L  R  K  Q  N  T  F  W  P  R :   L  F  I  L  L  K  L  N  Q  K  R  S  *  A  C  L  S  V  I  M  L  L  F  V  R :   *  L  N  Q  V  G  Q  K  E  N  A  K  A  G  Q  V  G  F  H  L  S  T  W  R  N  D  K  E  Y  L  L  L  M  E  Q  R  K  L  T  E  K  M  V  I  F  C  C  W  Y  L  W  N  S  C  Q  F  I  H  L  F  M  Q  E  H  R  V  E  C  V  T  Y  S  F  *  F  F  *  G  Y  S  G  Q  *  M  L  L  V  F  S  L  S  L  L  F  L  P  Q  H  R  L  V  I  T  D  G  L  *  L  K  C  T  *  L  S  T  L  F  L  Y  L  R  T  K  N  :  T  T  K  K  :  G  S  N  K  T  K  K  G </second_frame>
            <third_frame>   *  A  Q  R  T  S  R  *  T  A  T   : G  S  H  Q  A  V  *  C  N  W  L  *  K  F  R  C  Y  G  H  R  *  N  G  N  A  I  A  S  S  T  G  Q  V  V  *  V  Y  P  G  E  K   : G  F  S  E  R  D  C  *  G  S  *  N  I  Y  S  Y  R  I  Q  A  Y  R   : T  R  N  *  I  I  R  R  L  L  Q  I  W  S  *  K  S  Q  *  R  G  V  S  *  G  C  F  Y  L  R  R  C  S  *  A  C  R  E  G  G  *  R  S  K  *  T  I  L  Q  S   : G  T  G  T  I  E  S  Y  G  S  W  F  S  L  R  G  C  S  S  S  S  S  A  L  Q  *  N  A  A  R  G  G  D  T   : G  N  R  S  F  *  K  T  S  S  G  E  G  S  S  H  P  G  E  C  G  K  A  A  L  S  R  N  *  N  A  G  T  Q  S  Q  H  D  S  T  R  *  R  S  S  S  S  I  S  C  C  R  I  T  A  G  E  A  Y  I  S  E  A  C  C  N   : G  *  S  R  K  A  L  S  *  E  S  C  C  Y  S  G  *  Y  *  S  *   : D  S  F  *  K  A  A  K  R  G  C  S  S  C  S  H  T  S  C  *  P  S  G  P  N  T  *  E  N  K  I  L  F  G  R   : G  Y  S  F  F  *  S  *  I  R  K  G  A  K  L  V  C  R  *  L  C  C  C  S  *   : G  D  S  I  R  L  V  R  R  R  M  P  R  Q  G  R  L  V  S  I  *  V  R  G  E  T  T  K  S  T  Y  F  *  W  S  N  G  S  L  L  K  R  W  *  F  F  V  A  G  I  C  G  T  V  A  S  S  S  I  Y  S  C  K  S  I  E  L  S  V  *  H  I  H  F  S  S  F  R  V  I  L  D  S  K  C  F  W  S  F  P  F  P  F  C  F  Y  P  S  I  D  L  S  S  L  M  D  Y  S  *  N  A  L  S  *  V  P  S  S  S  T  C  E  R  K  I :   Q  Q  K  R :   D  Q  I  K  R  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49047" stop="49082"/>
                    <exon start="54840" stop="54962"/>
                    <exon start="56590" stop="56655"/>
                    <exon start="56994" stop="57143"/>
                    <exon start="58064" stop="58165"/>
                    <exon start="58283" stop="58480"/>
                    <exon start="58584" stop="58646"/>
                    <exon start="58734" stop="58838"/>
                    <exon start="59054" stop="59128"/>
                    <exon start="59711" stop="59830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLREQVAKQQQAVIKQFSATGYESSDVMVIDEMEMQLHHQLDKLYKSTREKRDFQKEIVKAAETFTAIGYKHIEPGTKLSEDCCKYGVENPNDEVLAKAASIYGDARKHAEKEVEDLNKLFFSQVLEPLRAMVAGSPLEDARHLAQRYSKMRQEAEIQATEVSRRQARVREAPIPENVAKLHSAETKMQELKANMTVLGKEAAAALAAVESQQERLTFQRLVAMVEAEKLYHERVAVILGNIEAEIVSEKQRKEAAPPVATLPVNPPAQIPEKTKYFLAEAIHSFEAESEKELSLSVGDYVVVRKVTQSGWSEGECQGRAGWFPSEYVEKRQRVPTSNGATEAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51267" PGL_stop="50593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51267" e_stop="50593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="51267" e_stop="50593" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51267" stop="50593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51247" stop="50674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51245" stop="50674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTGGAAAGGTACAAGGCTCGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTCAATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTAGTGAGTTGGGATTGAGTGGCACTAAACCAGTTAACACACCTTTGGAGACAAATCTGAAACTTACATCAGTTGACTATGATG</gDNA_template>
            <first_frame> A  V  E  R  Y  K  A  R  L  V  A  K  G  Y  S  Q  Q  E  G  L  D  Y  T  E  T  F  S  P  V  A  K  M  V  T  V  R  S  V  V  A  V  A  A  A  K  H  W  S  I  F  Q  M  D  V  H  N  A  F  L  Q  G  D  L  V  E  E  V  Y  L  E  V  P  S  G  F  A  S  Q  E  G  K  H  V  V  F  N  Y  I  S  L  S  M  D  S  N  R  H  L  G  N  G  T  R  N  S  L  M  H  *  Y  N  L  A  S  H  K  V  I  L  T  I  P  Y  S  P  R  Q  F  K  E  S  W  *  L  C  W  F  M  W  M  I  C  W  *  Q  E  A  V  Q  I  *  F  Y  K  Q  G  M  T  *  S  *  S  S  K  *  K  I  L  E  N  *  S  S  S  L  E  L  N  L  *  D  H  K  R  E  *  *  *  A  K  G  S  M  H  *  N  *  L  V  S  W  D  *  V  A  L  N  Q  L  T  H  L  W  R  Q  I  *  N  L  H  Q  L  T  M  M </first_frame>
            <second_frame>  L  W  K  G  T  R  L  D  L  *  L  K  V  I  A  N  K  R  G  *  I  T  L  R  P  S  L  Q  L  L  R  W  S  L  S  G  Q  L  W  L  W  Q  Q  L  N  I  G  L  F  F  R  W  M  F  I  M  L  F  F  K  G  I  *  W  R  K  C  I  W  R  F  P  L  V  L  L  A  R  R  G  S  M  L  S  S  I  T  *  V  S  L  W  T  Q  T  G  T  *  A  M  E  Q  E  T  H  *  C  I  D  T  T  W  L  L  T  K  S  F  *  L  F  L  I  H  Q  D  S  S  R  R  V  G  S  C  V  G  L  C  G  *  F  A  G  D  R  K  Q  Y  R  S  D  S  T  N  K  E  *  L  K  A  K  V  Q  N  E  R  S  W  R  I  E  V  L  P  W  N  *  I  C  E  I  T  K  G  N  S  D  E  P  K  E  V  C  I  R  T  N  *  *  V  G  I  E  W  H  *  T  S  *  H  T  F  G  D  K  S  E  T  Y  I  S  *  L  *   </second_frame>
            <third_frame>   C  G  K  V  Q  G  S  T  C  S  *  R  L  *  P  T  R  G  V  R  L  H  *  D  L  L  S  S  C  *  D  G  H  C  Q  V  S  C  G  C  G  S  S  *  T  L  V  Y  F  S  D  G  C  S  *  C  F  S  S  R  G  F  S  G  G  S  V  F  G  G  S  L  W  F  C  *  P  G  G  E  A  C  C  L  Q  L  H  K  S  L  Y  G  L  K  Q  A  P  R  Q  W  N  K  K  L  T  D  A  L  I  Q  L  G  F  S  Q  S  H  F  D  Y  S  L  F  T  K  T  V  Q  G  E  L  V  V  V  L  V  Y  V  D  D  L  L  V  T  G  S  S  T  D  L  I  L  Q  T  R  N  D  L  K  L  K  F  K  M  K  D  L  G  E  L  K  F  F  L  G  I  E  F  V  R  S  Q  K  G  I  V  M  S  Q  R  K  Y  A  L  E  L  I  S  E  L  G  L  S  G  T  K  P  V  N  T  P  L  E  T  N  L  K  L  T  S  V  D  Y  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51037" stop="50594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGGEACCLQLHKSLYGLKQAPRQWNKKLTDALIQLGFSQSHFDYSLFTKTVQGELVVVLVYVDDLLVTGSSTDLILQTRNDLKLKFKMKDLGELKFFLGIEFVRSQKGIVMSQRKYALELISELGLSGTKPVNTPLETNLKLTSVDYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="82909" PGL_stop="80800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82909" e_stop="82655"/>
            <exon e_start="81740" e_stop="81493"/>
            <exon e_start="80862" e_stop="80800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82909" e_stop="82655" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82654" i_stop="81741" i_length="914"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81740" e_stop="81493" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81492" i_stop="80863" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80862" e_stop="80800" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82909" stop="82655"/>
              <exon start="81740" stop="81493"/>
              <exon start="80862" stop="80823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82871" stop="82655"/>
              <exon start="81740" stop="81493"/>
              <exon start="80862" stop="80800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAG : GTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAG : AGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCT</gDNA_template>
            <first_frame> N  M  E  E  N  K  L  V  K  L  G  G  S  L  P  V  P  S  V  Q  Q  L  T  K  S  S  P  E  N  V  P  A  R  Y  R  R  D  D  D  Q  L  L  L  V  P  P  M  M  K  F  D  H  Y  N  I  P  I  I  N  M  E  S  L  L  R  G  D  E  I  E  F  N  K  L  D  S  A  C  R  E  W  G  F  F  Q  :  V  I  N  H  G  V  S  G  T  L  V  E  K  V  K  K  D  T  Q  D  F  F  N  L  P  L  E  E  K  E  M  L  K  Q  V  D  G  D  I  D  G  Y  G  Q  A  F  V  V  S  E  D  Q  K  L  D  W  A  D  M  F  F  L  T  T  L  P  P  Q  F  R  K  K  H  I  F  P  H  L  P  Q  P  F  R :   G  T  V  E  L  Y  A  V  E  L  K  K  L  A  L  K  I  I  D  F   </first_frame>
            <second_frame>  I  W  K  K  I  N  W  L  S  *  G  D  L  C  Q  Y  Q  V  F  N  N  *  P  K  A  H  R  K  M  S  R  R  V  T  G  E  M  M  I  N  Y  F  L  F  L  R  *  *  N  L  I  I  I  I  S  Q  S  S  T  W  K  A  C  F  V  A  M  K  S  N  S  T  S  L  I  L  L  V  E  N  G  D  F  F  R :   *  *  I  M  E  *  V  V  H  *  *  R  K  *  R  R  I  L  K  I  S  S  I  S  H  *  K  K  R  K  C  *  S  K  *  M  V  I  *  M  A  M  D  K  L  L  L  F  L  R  T  K  N  L  I  G  L  I  C  F  S  *  Q  P  S  L  L  N  S  E  K  N  I  S  S  P  T  S  L  N  H  S   : E  E  Q  W  N  Y  M  Q  L  N  *  K  N  W  L  *  R  S  L  I  F  </second_frame>
            <third_frame>   Y  G  R  K  *  I  G  *  A  R  G  I  F  A  S  T  K  C  S  T  I  D  Q  K  L  T  G  K  C  P  G  A  L  P  E  R  *  *  S  T  T  S  C  S  S  D  D  E  I  *  S  L  *  Y  P  N  H  Q  H  G  K  L  A  S  W  R  *  N  R  I  Q  Q  A  *  F  C  L  *  R  M  G  I  F  S   : G  D  K  S  W  S  E  W  Y  T  S  R  E  S  E  E  G  Y  S  R  F  L  Q  S  P  T  R  R  K  G  N  V  E  A  S  R  W  *  Y  R  W  L  W  T  S  F  C  C  F  *  G  P  K  T  *  L  G  *  Y  V  F  L  D  N  P  P  S  S  I  Q  K  K  T  Y  L  P  P  P  P  S  T  I  Q  :  R  N  S  G  T  I  C  S  *  T  E  K  T  G  F  K  D  H  *  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82909" stop="82655"/>
                    <exon start="81740" stop="81493"/>
                    <exon start="80862" stop="80802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMEENKLVKLGGSLPVPSVQQLTKSSPENVPARYRRDDDQLLLVPPMMKFDHYNIPIINMESLLRGDEIEFNKLDSACREWGFFQVINHGVSGTLVEKVKKDTQDFFNLPLEEKEMLKQVDGDIDGYGQAFVVSEDQKLDWADMFFLTTLPPQFRKKHIFPHLPQPFRGTVELYAVELKKLALKIIDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="99162" PGL_stop="94218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98941" e_stop="98892"/>
            <exon e_start="97001" e_stop="96757"/>
            <exon e_start="96675" e_stop="96351"/>
            <exon e_start="94676" e_stop="94218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.589" e_score="0.980"/>
          <exon-intron don_prob="0.717" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="98941" e_stop="98892" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.589">
            <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97001" e_stop="96757" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.717" acc_prob="0.882">
            <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="96675" e_stop="96351" e_length="325"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="94676" e_stop="94218" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98941" stop="98892"/>
              <exon start="97001" stop="96757"/>
              <exon start="96675" stop="96351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98941" stop="98892"/>
              <exon start="97001" stop="96757"/>
              <exon start="96675" stop="96467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96826" stop="96757"/>
              <exon start="96675" stop="96351"/>
              <exon start="94676" stop="94355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96406" stop="96351"/>
              <exon start="94676" stop="94218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG : TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG : AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG : ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGACTAAAAATTTATGACTCTTTATATTTTTGAATATGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATACTATAAATTAATATTATTCATATGTAAAAAATTAT</gDNA_template>
            <first_frame> L  S  L  T  S  C  T  *  Q  L  K  I  G  V  S  F  S :   *  L  I  M  E  L  V  V  Q  *  W  R  R  *  K  T  R  L  K  N  S  S  I  C  H  *  K  R  R  K  S  L  K  N  L  Q  E  I  Q  M  D  L  D  S  Y  S  S  S  L  M  N  K  S  L  T  G  L  I  S  F  T  *  R  L  H  P  H  I  C  E  S  L  C  F  P  S  F  T  F  H  L   : E  R  R  L  K  S  T  R  M  K  *  R  S  *  A  *  E  Y  W  K  R  W  V  K  L  W  G  L  M  K  M  K  *  R  V  F  S  K  K  E  C  N  R  *  G  *  I  T  I  H  H  V  H  N  Q  R  K  *  W  D  L  L  L  I  Q  M  Q  Q  A  L  Q  Y  F  F  K  L  M  K  L  K  V  F  K  L  K  K  M  E  F  G  S  P  L  N  H  S  L  M  P  S  *  S  M  L  E  M  L  L  R :   F  S  Q  M  E  Y  T  K  A  *  N  I  D  Q  W  *  A  Q  K  K  K  G  F  Q  *  Q  H  F  R  V  Q  D  W  M  V  Y  *  V  H  Q  V  A  L  L  H  L  K  I  H  Q  N  S  K  K  L  E  S  L  N  F  I  K  D  F  S  H  V  N  L  M  G  N  H  M  W  T  P  *  E  S  P  M  K  M  I  *  T  I  S  *  I  S  R  F  E  Y  I  S  E  F  L  *  C  C  K  M  L  Y  *  D  V  K  T  K  N  L  *  L  F  I  F  L  N  M  *  K  N  Y  M  M  I  L  D  V  Y  C  I  K  I  S  I  L  *  I  N  I  I  H  M  *  K  I   </first_frame>
            <second_frame>  *  A  *  Q  V  A  L  S  S  *  R  L  G  F  L  S   : V  D  *  S  W  S  *  L  F  S  S  G  E  D  E  R  R  D  S  K  I  L  R  S  A  I  R  R  E  E  K  V  *  K  I  F  R  R  Y  R  W  I  W  T  A  I  R  R  L  *  *  T  K  A  *  L  G  *  S  L  L  L  E  D  F  T  H  I  F  A  K  A  C  V  F  Q  A  L  P  F  T  *  :  R  D  D  *  R  V  R  G  *  N  K  E  A  K  H  E  S  I  G  N  V  G  *  S  F  G  D  *  *  R  *  S  E  E  C  F  Q  R  R  N  A  I  D  E  D  E  L  L  S  T  M  S  T  T  R  E  S  D  G  T  Y  S  S  F  R  C  N  R  P  Y  N  T  S  S  S  *  *  N  S  R  S  S  N  *  K  R  W  N  L  D  P  H  *  T  T  P  *  C  L  H  S  Q  C  W  R  C  F  *   : D  F  L  K  W  N  I  Q  K  H  R  T  *  I  S  G  E  L  R  K  R  K  D  F  S  S  N  I  S  E  S  K  I  G  W  Y  I  R  S  I  K  *  P  C  Y  T  S  K  S  T  K  I  Q  K  N  W  S  H  S  I  L  *  R  I  F  H  T  *  T  *  W  E  I  I  C  G  H  H  E  N  H  Q  *  R  *  S  K  Q  L  V  R  Y  L  D  L  S  I  Y  L  N  S  Y  N  A  V  R  C  Y  I  K  M  S  R  L  K  I  Y  D  S  L  Y  F  *  I  C  K  K  I  I  *  *  F  W  M  S  I  V  L  R  F  Q  Y  Y  K  L  I  L  F  I  C  K  K  L  </second_frame>
            <third_frame>   E  L  N  K  L  H  L  A  A  K  D  W  G  F  F  Q  :  L  I  N  H  G  V  S  C  S  V  V  E  K  M  K  D  E  T  Q  K  F  F  D  L  P  L  E  E  K  K  K  F  E  K  S  S  G  D  T  D  G  F  G  Q  L  F  V  V  S  D  E  Q  K  L  D  W  A  D  L  F  Y  L  K  T  S  P  T  Y  L  R  K  P  V  F  S  K  L  Y  L  S  L  R :   E  T  I  E  E  Y  A  D  E  I  K  K  L  S  M  R  V  L  E  T  L  G  K  A  L  G  I  D  E  D  E  V  K  S  V  F  K  E  G  M  Q  S  M  R  M  N  Y  Y  P  P  C  P  Q  P  E  K  V  M  G  L  T  P  H  S  D  A  T  G  L  T  I  L  L  Q  V  N  E  T  Q  G  L  Q  I  K  K  D  G  I  W  I  P  I  E  P  L  P  N  A  F  I  V  N  V  G  D  A  F  E  :  I  F  S  N  G  I  Y  K  S  I  E  H  R  S  V  V  S  S  E  K  E  R  I  S  V  A  T  F  Q  S  P  R  L  D  G  I  L  G  P  S  S  S  L  V  T  P  Q  N  P  P  K  F  K  K  I  G  V  T  Q  F  Y  K  G  F  F  T  R  E  L  D  G  K  S  Y  V  D  T  M  R  I  T  N  E  D  D  L  N  N  *  L  D  I  S  I  *  V  Y  I  *  I  L  I  M  L  *  D  V  I  L  R  C  Q  D  *  K  F  M  T  L  Y  I  F  E  Y  V  K  K  L  Y  D  D  F  G  C  L  L  Y  *  D  F  N  T  I  N  *  Y  Y  S  Y  V  K  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98939" stop="98892"/>
                    <exon start="97001" stop="96757"/>
                    <exon start="96675" stop="96351"/>
                    <exon start="94676" stop="94410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELNKLHLAAKDWGFFQLINHGVSCSVVEKMKDETQKFFDLPLEEKKKFEKSSGDTDGFGQLFVVSDEQKLDWADLFYLKTSPTYLRKPVFSKLYLSLRETIEEYADEIKKLSMRVLETLGKALGIDEDEVKSVFKEGMQSMRMNYYPPCPQPEKVMGLTPHSDATGLTILLQVNETQGLQIKKDGIWIPIEPLPNAFIVNVGDAFEIFSNGIYKSIEHRSVVSSEKERISVATFQSPRLDGILGPSSSLVTPQNPPKFKKIGVTQFYKGFFTRELDGKSYVDTMRITNEDDLNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99162" e_stop="98892"/>
            <exon e_start="97001" e_stop="96351"/>
            <exon e_start="94676" e_stop="94218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.589" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99162" e_stop="98892" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.589">
            <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97001" e_stop="96351" e_length="651"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="94676" e_stop="94218" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99162" stop="98892"/>
              <exon start="97001" stop="96351"/>
              <exon start="94676" stop="94507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96406" stop="96351"/>
              <exon start="94676" stop="94218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG : TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG : ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGACTAAAAATTTATGACTCTTTATATTTTTGAATATGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATACTATAAATTAATATTATTCATATGTAAAAAATTAT</gDNA_template>
            <first_frame> H  H  R  I  K  Q  L  N  K  Y  E  R  H  R  S  Q  V  H  G  S  S  F  C  T  G  T  G  Q  E  E  T  R  V  D  S  I  A  I  R  T  R  *  S  R  P  F  N  C  I  I  N  L  *  R  S  P  S  N  *  Y  A  T  I  D  Q  L  *  *  S  *  L  H  E  S  *  A  *  Q  V  A  L  S  S  *  R  L  G  F  L  S   : V  D  *  S  W  S  *  L  F  S  S  G  E  D  E  R  R  D  S  K  I  L  R  S  A  I  R  R  E  E  K  V  *  K  I  F  R  R  Y  R  W  I  W  T  A  I  R  R  L  *  *  T  K  A  *  L  G  *  S  L  L  L  E  D  F  T  H  I  F  A  K  A  C  V  F  Q  A  L  P  F  T  *  V  H  T  K  R  C  L  R  P  F  *  R  L  K  I  S  K  R  I  A  Y  *  C  V  *  M  *  R  D  D  *  R  V  R  G  *  N  K  E  A  K  H  E  S  I  G  N  V  G  *  S  F  G  D  *  *  R  *  S  E  E  C  F  Q  R  R  N  A  I  D  E  D  E  L  L  S  T  M  S  T  T  R  E  S  D  G  T  Y  S  S  F  R  C  N  R  P  Y  N  T  S  S  S  *  *  N  S  R  S  S  N  *  K  R  W  N  L  D  P  H  *  T  T  P  *  C  L  H  S  Q  C  W  R  C  F  *   : D  F  L  K  W  N  I  Q  K  H  R  T  *  I  S  G  E  L  R  K  R  K  D  F  S  S  N  I  S  E  S  K  I  G  W  Y  I  R  S  I  K  *  P  C  Y  T  S  K  S  T  K  I  Q  K  N  W  S  H  S  I  L  *  R  I  F  H  T  *  T  *  W  E  I  I  C  G  H  H  E  N  H  Q  *  R  *  S  K  Q  L  V  R  Y  L  D  L  S  I  Y  L  N  S  Y  N  A  V  R  C  Y  I  K  M  S  R  L  K  I  Y  D  S  L  Y  F  *  I  C  K  K  I  I  *  *  F  W  M  S  I  V  L  R  F  Q  Y  Y  K  L  I  L  F  I  C  K  K  L  </first_frame>
            <second_frame>  T  I  E  L  S  S  *  T  N  M  R  D  I  E  V  K  Y  M  E  V  P  S  V  Q  E  L  A  K  K  K  L  V  S  I  P  S  R  Y  V  R  D  D  Q  D  R  S  I  A  S  S  I  Y  K  E  V  P  V  I  D  M  Q  R  L  I  N  F  N  D  H  D  S  M  N  L  E  L  N  K  L  H  L  A  A  K  D  W  G  F  F  Q  :  L  I  N  H  G  V  S  C  S  V  V  E  K  M  K  D  E  T  Q  K  F  F  D  L  P  L  E  E  K  K  K  F  E  K  S  S  G  D  T  D  G  F  G  Q  L  F  V  V  S  D  E  Q  K  L  D  W  A  D  L  F  Y  L  K  T  S  P  T  Y  L  R  K  P  V  F  S  K  L  Y  L  S  L  R  Y  I  P  N  V  V  C  A  L  F  N  A  *  K  *  V  R  E  S  L  I  N  A  Y  K  C  R  E  T  I  E  E  Y  A  D  E  I  K  K  L  S  M  R  V  L  E  T  L  G  K  A  L  G  I  D  E  D  E  V  K  S  V  F  K  E  G  M  Q  S  M  R  M  N  Y  Y  P  P  C  P  Q  P  E  K  V  M  G  L  T  P  H  S  D  A  T  G  L  T  I  L  L  Q  V  N  E  T  Q  G  L  Q  I  K  K  D  G  I  W  I  P  I  E  P  L  P  N  A  F  I  V  N  V  G  D  A  F  E  :  I  F  S  N  G  I  Y  K  S  I  E  H  R  S  V  V  S  S  E  K  E  R  I  S  V  A  T  F  Q  S  P  R  L  D  G  I  L  G  P  S  S  S  L  V  T  P  Q  N  P  P  K  F  K  K  I  G  V  T  Q  F  Y  K  G  F  F  T  R  E  L  D  G  K  S  Y  V  D  T  M  R  I  T  N  E  D  D  L  N  N  *  L  D  I  S  I  *  V  Y  I  *  I  L  I  M  L  *  D  V  I  L  R  C  Q  D  *  K  F  M  T  L  Y  I  F  E  Y  V  K  K  L  Y  D  D  F  G  C  L  L  Y  *  D  F  N  T  I  N  *  Y  Y  S  Y  V  K  N  Y </second_frame>
            <third_frame>   P  *  N  *  A  V  K  Q  I  *  E  T  *  K  S  S  T  W  K  F  L  L  Y  R  N  W  P  R  R  N  S  C  R  F  H  R  D  T  Y  A  M  I  K  T  V  Q  L  H  H  Q  F  I  K  K  S  Q  *  L  I  C  N  D  *  S  T  L  M  I  M  T  P  *  I  L  S  L  T  S  C  T  *  Q  L  K  I  G  V  S  F  S :   *  L  I  M  E  L  V  V  Q  *  W  R  R  *  K  T  R  L  K  N  S  S  I  C  H  *  K  R  R  K  S  L  K  N  L  Q  E  I  Q  M  D  L  D  S  Y  S  S  S  L  M  N  K  S  L  T  G  L  I  S  F  T  *  R  L  H  P  H  I  C  E  S  L  C  F  P  S  F  T  F  H  L  G  T  Y  Q  T  L  F  A  P  F  L  T  L  E  N  K  *  E  N  R  L  L  M  R  I  N  V  E  R  R  L  K  S  T  R  M  K  *  R  S  *  A  *  E  Y  W  K  R  W  V  K  L  W  G  L  M  K  M  K  *  R  V  F  S  K  K  E  C  N  R  *  G  *  I  T  I  H  H  V  H  N  Q  R  K  *  W  D  L  L  L  I  Q  M  Q  Q  A  L  Q  Y  F  F  K  L  M  K  L  K  V  F  K  L  K  K  M  E  F  G  S  P  L  N  H  S  L  M  P  S  *  S  M  L  E  M  L  L  R :   F  S  Q  M  E  Y  T  K  A  *  N  I  D  Q  W  *  A  Q  K  K  K  G  F  Q  *  Q  H  F  R  V  Q  D  W  M  V  Y  *  V  H  Q  V  A  L  L  H  L  K  I  H  Q  N  S  K  K  L  E  S  L  N  F  I  K  D  F  S  H  V  N  L  M  G  N  H  M  W  T  P  *  E  S  P  M  K  M  I  *  T  I  S  *  I  S  R  F  E  Y  I  S  E  F  L  *  C  C  K  M  L  Y  *  D  V  K  T  K  N  L  *  L  F  I  F  L  N  M  *  K  N  Y  M  M  I  L  D  V  Y  C  I  K  I  S  I  L  *  I  N  I  I  H  M  *  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96710" stop="96351"/>
                    <exon start="94676" stop="94410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRESLINAYKCRETIEEYADEIKKLSMRVLETLGKALGIDEDEVKSVFKEGMQSMRMNYYPPCPQPEKVMGLTPHSDATGLTILLQVNETQGLQIKKDGIWIPIEPLPNAFIVNVGDAFEIFSNGIYKSIEHRSVVSSEKERISVATFQSPRLDGILGPSSSLVTPQNPPKFKKIGVTQFYKGFFTRELDGKSYVDTMRITNEDDLNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99140" stop="98892"/>
                    <exon start="97001" stop="96717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNMRDIEVKYMEVPSVQELAKKKLVSIPSRYVRDDQDRSIASSIYKEVPVIDMQRLINFNDHDSMNLELNKLHLAAKDWGFFQLINHGVSCSVVEKMKDETQKFFDLPLEEKKKFEKSSGDTDGFGQLFVVSDEQKLDWADLFYLKTSPTYLRKPVFSKLYLSLRYIPNVVCALFNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="114480" PGL_stop="111954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114480" e_stop="114127"/>
            <exon e_start="114031" e_stop="113784"/>
            <exon e_start="113726" e_stop="113386"/>
            <exon e_start="113323" e_stop="112933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.960"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.940"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="114480" e_stop="114127" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="114031" e_stop="113784" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57"/>
          </intron>
          <exon e_serial="3" e_score="0.940">
            <gDNA_exon_boundary e_start="113726" e_stop="113386" e_length="341"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62"/>
          </intron>
          <exon e_serial="4" e_score="0.870">
            <gDNA_exon_boundary e_start="113323" e_stop="112933" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114479" stop="114127"/>
              <exon start="114031" stop="113820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114477" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114475" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114469" stop="114127"/>
              <exon start="114031" stop="113937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114164" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113991" stop="113784"/>
              <exon start="113726" stop="113431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113720" stop="113386"/>
              <exon start="113323" stop="112933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAAGGGGATTTTTCCAG : TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAG : GGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAGGTGAGATATATGT : ATTGTGACAAATGGAATTTACAAGAGCATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCACTCCTCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTTAAAACCATTAAGAAATGCATAAA</gDNA_template>
            <first_frame> A  K  Y  N  K  I  L  S  T  T  H  N  N  L  S  I  L  D  N  D  F  A  K  K  K  K  I  Q  V  D  D  G  R  S  E  V  E  K  A  R  W  L  F  E  S  F  *  R  S  G  A  G  K  T  T  T  S  R  C  S  V  A  I  Y  S  C  *  *  *  R  K  S  I  V  *  F  V  H  I  I  A  S  *  I  S  S  S  Y  *  H  E  K  T  A  Q  N  N  *  R  R  *  Y  R  A  *  Q  I  S  S  C  L  Q  R  R  G  F  F  Q  :  L  V  N  H  G  V  S  S  S  L  M  E  K  V  K  S  E  I  R  A  F  F  D  L  P  M  E  E  K  T  K  F  E  Q  E  E  G  D  L  E  G  Y  G  Q  A  F  V  V  S  E  E  K  K  L  D  W  A  D  I  L  Y  M  I  T  L  P  T  H  L  R  K  P  H  L  F  P  K  L  P  A  S  F  R :   D  A  L  E  Q  Y  S  R  A  L  K  E  L  A  M  K  I  L  Y  V  M  A  R  A  L  G  M  K  T  E  D  M  N  V  L  F  E  Q  D  G  T  Q  M  M  R  I  N  Y  Y  P  P  C  P  Q  P  E  R  V  M  G  L  C  P  H  T  D  A  I  G  L  A  I  L  L  Q  V  N  E  T  E  G  L  Q  I  K  K  D  G  A  W  I  P  V  P  Y  L  P  D  A  F  V  V  N  I  G  D  I  L  E  V  R  Y  M   : Y  C  D  K  W  N  L  Q  E  H  *  S  W  G  *  G  E  D  L  Y  C  Y  I  F  *  P  Q  I  G  R  R  F  R  S  S  T  K  S  P  H  S  S  K  Y  R  R  I  G  V  A  D  Y  F  K  G  F  F  S  R  E  L  H  G  K  S  Y  L  H  T  L  K  I  G  N  G  D  H  D  S  N  *  S  M  L  H  F  I  P  L  V  *  *  L  L  *  Q  W  W  S  V  *  L  Y  E  L  S  H  V  M  *  K  V  A  E  E  Q  L  L  L  I  F  I  F  K  T  I  K  K  C  I   </first_frame>
            <second_frame>  Q  S  T  I  K  F  Y  R  L  H  T  I  I  F  Q  S  *  I  M  I  L  L  K  K  K  K  Y  K  L  M  M  E  E  A  R  S  R  K  L  G  G  S  L  K  V  S  N  V  Q  E  L  A  K  Q  Q  L  A  G  V  P  S  R  Y  I  R  V  N  D  D  E  N  Q  L  Y  N  S  S  I  L  L  P  H  E  L  A  P  V  I  D  M  K  K  L  L  K  I  I  K  D  G  D  T  E  L  N  R  F  H  L  A  C  K  E  G  D  F  S  S :   W  *  I  T  E  *  V  H  H  *  W  R  K  *  N  Q  K  S  E  H  F  S  I  Y  Q  W  K  R  R  R  N  S  S  K  K  R  E  I  S  K  D  T  G  K  H  L  L  Y  L  K  R  K  S  *  I  G  L  I  Y  F  T  *  S  L  S  L  L  I  C  E  N  L  T  C  F  Q  S  F  L  P  R  S   : G  M  H  W  N  N  T  Q  E  H  *  R  N  L  L  *  K  F  C  T  *  W  P  E  L  *  G  *  K  Q  R  I  *  M  Y  Y  L  N  K  T  G  H  K  *  *  E  *  I  I  I  L  L  V  L  N  Q  S  A  *  W  G  Y  A  P  I  L  M  L  L  V  *  L  Y  Y  F  R  L  M  K  R  K  V  F  K  L  R  K  M  E  L  G  F  R  F  H  I  F  L  M  P  L  L  S  T  L  E  I  F  *  R  *  D  I  C  :  I  V  T  N  G  I  Y  K  S  I  D  H  G  D  K  E  R  I  S  I  A  T  F  F  S  P  K  L  D  G  D  L  G  P  A  P  S  L  L  T  P  Q  N  I  G  G  L  E  W  P  I  T  S  K  D  F  F  L  E  S  S  M  E  N  H  T  Y  I  L  *  K  L  E  M  E  I  M  I  A  I  D  Q  C  C  I  L  F  R  S  Y  D  N  Y  C  S  N  G  G  L  F  S  C  M  S  Y  L  M  *  C  K  R  L  Q  K  N  S  Y  C  L  Y  L  Y  L  K  P  L  R  N  A  *  </second_frame>
            <third_frame>   K  V  Q  *  N  F  I  D  Y  T  Q  *  S  F  N  P  R  *  *  F  C  *  K  K  K  N  T  S  *  *  W  K  K  R  G  R  E  S  *  V  A  L  *  K  F  L  T  F  R  S  W  Q  N  N  N  *  Q  V  F  R  R  D  I  F  V  L  M  M  T  K  I  N  C  I  I  R  P  Y  Y  C  L  M  N  *  L  Q  L  L  T  *  K  N  C  S  K  *  L  K  T  V  I  Q  S  L  T  D  F  I  L  L  A  K  K  G  I  F  P   : V  G  E  S  R  S  E  F  I  I  D  G  E  S  E  I  R  N  Q  S  I  F  R  S  T  N  G  R  E  D  E  I  R  A  R  R  G  R  S  R  R  I  R  A  S  I  C  C  I  *  R  E  K  V  R  L  G  *  Y  T  L  H  D  H  S  P  Y  S  F  A  K  T  S  L  V  S  K  A  S  C  L  V  Q  :  G  C  I  G  T  I  L  K  S  T  E  G  T  C  Y  E  N  S  V  R  N  G  Q  S  F  R  D  E  N  R  G  Y  E  C  I  I  *  T  R  R  D  T  N  D  E  N  K  L  L  S  S  L  S  S  T  R  A  R  N  G  V  M  P  P  Y  *  C  Y  W  S  S  Y  I  T  S  G  *  *  N  G  R  S  S  N  *  E  R  W  S  L  D  S  G  S  I  S  S  *  C  L  C  C  Q  H  W  R  Y  F  R  G  E  I  Y  V :   L  *  Q  M  E  F  T  R  A  L  I  M  G  I  R  R  G  S  L  L  L  H  F  L  A  P  N  W  T  E  I  *  V  Q  H  Q  V  S  S  L  L  K  I  *  E  D  W  S  G  R  L  L  Q  R  I  F  F  S  R  A  P  W  K  I  I  P  T  Y  S  K  N  W  K  W  R  S  *  *  Q  L  I  N  V  A  F  Y  S  A  R  M  I  I  I  V  A  M  V  V  C  L  V  V  *  A  I  S  C  D  V  K  G  C  R  R  T  V  I  A  Y  I  Y  I  *  N  H  *  E  M  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114165" stop="114127"/>
                    <exon start="114031" stop="113784"/>
                    <exon start="113726" stop="113386"/>
                    <exon start="113323" stop="113292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISSCLQRRGFFQLVNHGVSSSLMEKVKSEIRAFFDLPMEEKTKFEQEEGDLEGYGQAFVVSEEKKLDWADILYMITLPTHLRKPHLFPKLPASFRDALEQYSRALKELAMKILYVMARALGMKTEDMNVLFEQDGTQMMRINYYPPCPQPERVMGLCPHTDAIGLAILLQVNETEGLQIKKDGAWIPVPYLPDAFVVNIGDILEVRYMYCDKWNLQEH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114480" e_stop="114127"/>
            <exon e_start="114031" e_stop="113784"/>
            <exon e_start="113726" e_stop="113386"/>
            <exon e_start="113323" e_stop="112970"/>
            <exon e_start="112729" e_stop="112721"/>
            <exon e_start="111994" e_stop="111954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.960"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.552" e_score="0.864"/>
          <exon-intron don_prob="0.900" acc_prob="0.760" e_score="0.778"/>
          <exon-only e_score="0.683"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="114480" e_stop="114127" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="114031" e_stop="113784" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="113726" e_stop="113386" e_length="341"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62"/>
          </intron>
          <exon e_serial="4" e_score="0.864">
            <gDNA_exon_boundary e_start="113323" e_stop="112970" e_length="354"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.552">
            <gDNA_intron_boundary i_start="112969" i_stop="112730" i_length="240"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="112729" e_stop="112721" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.760">
            <gDNA_intron_boundary i_start="112720" i_stop="111995" i_length="726"/>
          </intron>
          <exon e_serial="6" e_score="0.683">
            <gDNA_exon_boundary e_start="111994" e_stop="111954" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114479" stop="114127"/>
              <exon start="114031" stop="113820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114477" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114475" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114469" stop="114127"/>
              <exon start="114031" stop="113937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114164" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113991" stop="113784"/>
              <exon start="113726" stop="113431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113694" stop="113386"/>
              <exon start="113323" stop="112970"/>
              <exon start="112729" stop="112721"/>
              <exon start="111994" stop="111954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAAGGGGATTTTTCCAG : TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAG : GGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAGGTGAGATATATGT : ATTGTGACAAATGGAATTTACAAGAGCATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCACTCCTCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGC : GTAAAAACA : TAATAAAAAAAAGTAGTACAAGAAGAACACGAACAAAAAAA</gDNA_template>
            <first_frame> A  K  Y  N  K  I  L  S  T  T  H  N  N  L  S  I  L  D  N  D  F  A  K  K  K  K  I  Q  V  D  D  G  R  S  E  V  E  K  A  R  W  L  F  E  S  F  *  R  S  G  A  G  K  T  T  T  S  R  C  S  V  A  I  Y  S  C  *  *  *  R  K  S  I  V  *  F  V  H  I  I  A  S  *  I  S  S  S  Y  *  H  E  K  T  A  Q  N  N  *  R  R  *  Y  R  A  *  Q  I  S  S  C  L  Q  R  R  G  F  F  Q  :  L  V  N  H  G  V  S  S  S  L  M  E  K  V  K  S  E  I  R  A  F  F  D  L  P  M  E  E  K  T  K  F  E  Q  E  E  G  D  L  E  G  Y  G  Q  A  F  V  V  S  E  E  K  K  L  D  W  A  D  I  L  Y  M  I  T  L  P  T  H  L  R  K  P  H  L  F  P  K  L  P  A  S  F  R :   D  A  L  E  Q  Y  S  R  A  L  K  E  L  A  M  K  I  L  Y  V  M  A  R  A  L  G  M  K  T  E  D  M  N  V  L  F  E  Q  D  G  T  Q  M  M  R  I  N  Y  Y  P  P  C  P  Q  P  E  R  V  M  G  L  C  P  H  T  D  A  I  G  L  A  I  L  L  Q  V  N  E  T  E  G  L  Q  I  K  K  D  G  A  W  I  P  V  P  Y  L  P  D  A  F  V  V  N  I  G  D  I  L  E  V  R  Y  M   : Y  C  D  K  W  N  L  Q  E  H  *  S  W  G  *  G  E  D  L  Y  C  Y  I  F  *  P  Q  I  G  R  R  F  R  S  S  T  K  S  P  H  S  S  K  Y  R  R  I  G  V  A  D  Y  F  K  G  F  F  S  R  E  L  H  G  K  S  Y  L  H  T  L  K  I  G  N  G  D  H  D  S  N  *  S  M  L  H  F  I  P  L  V  *  *  L  L  *  Q  W  W  S  V  *  L  Y  E  L  S  H  V  M  *  K  V  A  E  E  Q  L  L   : R  K  N   : I  I  K  K  S  S  T  R  R  T  R  T  K  K </first_frame>
            <second_frame>  Q  S  T  I  K  F  Y  R  L  H  T  I  I  F  Q  S  *  I  M  I  L  L  K  K  K  K  Y  K  L  M  M  E  E  A  R  S  R  K  L  G  G  S  L  K  V  S  N  V  Q  E  L  A  K  Q  Q  L  A  G  V  P  S  R  Y  I  R  V  N  D  D  E  N  Q  L  Y  N  S  S  I  L  L  P  H  E  L  A  P  V  I  D  M  K  K  L  L  K  I  I  K  D  G  D  T  E  L  N  R  F  H  L  A  C  K  E  G  D  F  S  S :   W  *  I  T  E  *  V  H  H  *  W  R  K  *  N  Q  K  S  E  H  F  S  I  Y  Q  W  K  R  R  R  N  S  S  K  K  R  E  I  S  K  D  T  G  K  H  L  L  Y  L  K  R  K  S  *  I  G  L  I  Y  F  T  *  S  L  S  L  L  I  C  E  N  L  T  C  F  Q  S  F  L  P  R  S   : G  M  H  W  N  N  T  Q  E  H  *  R  N  L  L  *  K  F  C  T  *  W  P  E  L  *  G  *  K  Q  R  I  *  M  Y  Y  L  N  K  T  G  H  K  *  *  E  *  I  I  I  L  L  V  L  N  Q  S  A  *  W  G  Y  A  P  I  L  M  L  L  V  *  L  Y  Y  F  R  L  M  K  R  K  V  F  K  L  R  K  M  E  L  G  F  R  F  H  I  F  L  M  P  L  L  S  T  L  E  I  F  *  R  *  D  I  C  :  I  V  T  N  G  I  Y  K  S  I  D  H  G  D  K  E  R  I  S  I  A  T  F  F  S  P  K  L  D  G  D  L  G  P  A  P  S  L  L  T  P  Q  N  I  G  G  L  E  W  P  I  T  S  K  D  F  F  L  E  S  S  M  E  N  H  T  Y  I  L  *  K  L  E  M  E  I  M  I  A  I  D  Q  C  C  I  L  F  R  S  Y  D  N  Y  C  S  N  G  G  L  F  S  C  M  S  Y  L  M  *  C  K  R  L  Q  K  N  S  Y  C  :  V  K  T  :  *  *  K  K  V  V  Q  E  E  H  E  Q  K   </second_frame>
            <third_frame>   K  V  Q  *  N  F  I  D  Y  T  Q  *  S  F  N  P  R  *  *  F  C  *  K  K  K  N  T  S  *  *  W  K  K  R  G  R  E  S  *  V  A  L  *  K  F  L  T  F  R  S  W  Q  N  N  N  *  Q  V  F  R  R  D  I  F  V  L  M  M  T  K  I  N  C  I  I  R  P  Y  Y  C  L  M  N  *  L  Q  L  L  T  *  K  N  C  S  K  *  L  K  T  V  I  Q  S  L  T  D  F  I  L  L  A  K  K  G  I  F  P   : V  G  E  S  R  S  E  F  I  I  D  G  E  S  E  I  R  N  Q  S  I  F  R  S  T  N  G  R  E  D  E  I  R  A  R  R  G  R  S  R  R  I  R  A  S  I  C  C  I  *  R  E  K  V  R  L  G  *  Y  T  L  H  D  H  S  P  Y  S  F  A  K  T  S  L  V  S  K  A  S  C  L  V  Q  :  G  C  I  G  T  I  L  K  S  T  E  G  T  C  Y  E  N  S  V  R  N  G  Q  S  F  R  D  E  N  R  G  Y  E  C  I  I  *  T  R  R  D  T  N  D  E  N  K  L  L  S  S  L  S  S  T  R  A  R  N  G  V  M  P  P  Y  *  C  Y  W  S  S  Y  I  T  S  G  *  *  N  G  R  S  S  N  *  E  R  W  S  L  D  S  G  S  I  S  S  *  C  L  C  C  Q  H  W  R  Y  F  R  G  E  I  Y  V :   L  *  Q  M  E  F  T  R  A  L  I  M  G  I  R  R  G  S  L  L  L  H  F  L  A  P  N  W  T  E  I  *  V  Q  H  Q  V  S  S  L  L  K  I  *  E  D  W  S  G  R  L  L  Q  R  I  F  F  S  R  A  P  W  K  I  I  P  T  Y  S  K  N  W  K  W  R  S  *  *  Q  L  I  N  V  A  F  Y  S  A  R  M  I  I  I  V  A  M  V  V  C  L  V  V  *  A  I  S  C  D  V  K  G  C  R  R  T  V  I  A :   *  K  H :   N  K  K  K  *  Y  K  K  N  T  N  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114165" stop="114127"/>
                    <exon start="114031" stop="113784"/>
                    <exon start="113726" stop="113386"/>
                    <exon start="113323" stop="113292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISSCLQRRGFFQLVNHGVSSSLMEKVKSEIRAFFDLPMEEKTKFEQEEGDLEGYGQAFVVSEEKKLDWADILYMITLPTHLRKPHLFPKLPASFRDALEQYSRALKELAMKILYVMARALGMKTEDMNVLFEQDGTQMMRINYYPPCPQPERVMGLCPHTDAIGLAILLQVNETEGLQIKKDGAWIPVPYLPDAFVVNIGDILEVRYMYCDKWNLQEH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="116411" PGL_stop="117161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116411" e_stop="117161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="116411" e_stop="117161" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116411" stop="117161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116421" stop="117013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTTTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTTAAATATATCACATTTACGCGCATAATATTTTCAGGCGGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGTAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTGCCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCATTTCCTCTTCGTCCATCCTTAAAGCCTTTGTCAATTGGCATACGATGATCCTTGCTAGGCTCTTAATTTCTTTGCAGTAAGCTTCCAAGACGTCCCTACATTTCAATACACACAAACATATTAATTAAAAGATGAGGAGAGCGGGATATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCCACTTTGCGGATACGAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCCAAGCTGTCTTCCTGTTGCC</gDNA_template>
            <first_frame> V  R  *  G  C  V  Q  V  L  I  R  I  Q  G  S  C  N  R  M  S  Q  Q  R  A  F  L  H  L  S  L  Q  L  L  C  A  Q  Y  S  Y  T  H  H  C  S  I  S  A  K  L  N  I  S  H  L  R  A  *  Y  F  Q  A  V  V  E  H  F  Y  L  H  H  V  S  N  I  H  N  Q  S  I  W  E  G  L  Y  G  H  P  N  I  I  F  S  D  L  *  T  F  S  F  V  Q  L  E  K  D  G  E  D  T  R  I  R  M  S  A  *  A  N  C  P  V  W  F  R  A  R  R  I  I  I  H  P  H  *  L  H  T  I  T  E  *  I  S  H  F  L  F  V  H  P  *  S  L  C  Q  L  A  Y  D  D  P  C  *  A  L  N  F  F  A  V  S  F  Q  D  V  P  T  F  Q  Y  T  Q  T  Y  *  L  K  D  E  E  S  G  I  *  L  *  G  D  R  H  L  R  F  E  G  N  F  *  N  K  S  T  L  R  I  R  G  G  R  V  I  M  P  N  I  S  L  Q  S  S  F  C  S  S  D  T  T  N  A  F  P  K  P  S  K  L  S  S  C  C  </first_frame>
            <second_frame>  S  D  E  A  V  C  R  S  *  F  G  F  K  V  H  V  I  E  C  R  N  R  E  P  F  F  I  *  V  Y  N  C  S  V  L  N  T  P  I  H  T  I  A  Q  Y  L  P  S  *  I  Y  H  I  Y  A  H  N  I  F  R  R  *  *  N  I  F  T  S  I  M  S  P  I  F  T  I  K  A  F  G  R  G  F  M  G  T  Q  I  S  S  F  R  T  C  R  P  S  V  S  F  S  W  K  R  M  V  R  T  P  G  S  E  *  V  L  K  P  I  A  L  F  G  S  G  Q  G  G  *  *  F  I  L  I  D  C  I  P  S  L  N  R  S  L  I  S  S  S  S  I  L  K  A  F  V  N  W  H  T  M  I  L  A  R  L  L  I  S  L  Q  *  A  S  K  T  S  L  H  F  N  T  H  K  H  I  N  *  K  M  R  R  A  G  Y  S  Y  K  E  I  G  T  *  D  S  R  A  I  S  E  T  S  P  L  C  G  Y  E  E  E  E  S  L  C  Q  T  Y  H  S  N  Q  A  S  A  P  P  I  Q  R  M  H  S  Q  N  L  P  S  C  L  P  V  A </second_frame>
            <third_frame>   P  M  R  L  C  A  G  P  N  S  D  S  R  F  M  *  *  N  V  A  T  E  S  L  S  S  F  E  F  T  I  A  L  C  S  I  L  L  Y  T  P  L  L  N  I  C  Q  V  K  Y  I  T  F  T  R  I  I  F  S  G  G  S  R  T  F  L  P  P  S  C  L  Q  Y  S  Q  S  K  H  L  G  G  A  L  W  A  P  K  Y  H  L  F  G  L  V  D  L  Q  F  R  S  A  G  K  G  W  *  G  H  Q  D  Q  N  E  C  L  S  Q  L  P  C  L  V  Q  G  K  A  D  N  N  S  S  S  L  T  A  Y  H  H  *  I  D  L  S  F  P  L  R  P  S  L  K  P  L  S  I  G  I  R  *  S  L  L  G  S  *  F  L  C  S  K  L  P  R  R  P  Y  I  S  I  H  T  N  I  L  I  K  R  *  G  E  R  D  I  V  I  R  R  *  A  P  E  I  R  G  Q  F  L  K  Q  V  H  F  A  D  T  R  R  K  S  H  Y  A  K  H  I  T  P  I  K  L  L  L  L  R  Y  N  E  C  I  P  K  T  F  Q  A  V  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116464" stop="116730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVATESLSSFEFTIALCSILLYTPLLNICQVKYITFTRIIFSGGSRTFLPPSCLQYSQSKHLGGALWAPKYHLFGLVDLQFRSAGKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="118877" PGL_stop="116879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118877" e_stop="118609"/>
            <exon e_start="117258" e_stop="117011"/>
            <exon e_start="116936" e_stop="116879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="0.910"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.919"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="118877" e_stop="118609" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="118608" i_stop="117259" i_length="1350"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="117258" e_stop="117011" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117010" i_stop="116937" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.810">
            <gDNA_exon_boundary e_start="116936" e_stop="116879" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118877" stop="118609"/>
              <exon start="117258" stop="117069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118876" stop="118609"/>
              <exon start="117258" stop="117011"/>
              <exon start="116936" stop="116879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118870" stop="118609"/>
              <exon start="117258" stop="117011"/>
              <exon start="116936" stop="116917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118870" stop="118609"/>
              <exon start="117258" stop="117105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118858" stop="118609"/>
              <exon start="117258" stop="117074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118842" stop="118609"/>
              <exon start="117258" stop="117011"/>
              <exon start="116936" stop="116911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118819" stop="118609"/>
              <exon start="117258" stop="117040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118816" stop="118609"/>
              <exon start="117258" stop="117193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAGTTTGCAACAAAAGCAAATGGAGTCAACGCCGGAAAAATTATACTTTGGAAAATCTCTGTTAGTTCCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGCCAGGTATGTCCGCCCAGAGCAAGAAACTCCGGTCATATCCACCGGAGCATCGGTTCCAGTAATCGATCTTCAAAAGCTGATTTCAGGCGATTCCATGGATTCTGAGCTGCAAGAGCTTCACTCTGCTTGCCAACAATGGGGTTTCCTACAG : GTTATTAACCATGGAGTGACACCTTCGTTACTGGAGGATTTCAAGAGAGAGGTTATTCAATTGTTCAAACTACCAATGGAGGAAAAGAAGAAACTATGGCAACAGGAAGACAGCTTGGAAGGTTTTGGGAATGCATTCGTTGTATCGGAGGAGCAGAAGCTTGATTGGAGTGATATGTTTGGCATAATGACTCTTCCTCCTCGTATCCGCAAAGTGGACTTGTTTCAGAAATTGCCCTCGAATCTCAG : GGACGTCTTGGAAGCTTACTGCAAAGAAATTAAGAGCCTAGCAAGGATCATCGTATGC</gDNA_template>
            <first_frame> I  Q  V  C  N  K  S  K  W  S  Q  R  R  K  N  Y  T  L  E  N  L  C  *  F  Q  V  F  K  S  L  P  N  S  T  *  P  I  F  R  P  G  M  S  A  Q  S  K  K  L  R  S  Y  P  P  E  H  R  F  Q  *  S  I  F  K  S  *  F  Q  A  I  P  W  I  L  S  C  K  S  F  T  L  L  A  N  N  G  V  S  Y  R :   L  L  T  M  E  *  H  L  R  Y  W  R  I  S  R  E  R  L  F  N  C  S  N  Y  Q  W  R  K  R  R  N  Y  G  N  R  K  T  A  W  K  V  L  G  M  H  S  L  Y  R  R  S  R  S  L  I  G  V  I  C  L  A  *  *  L  F  L  L  V  S  A  K  W  T  C  F  R  N  C  P  R  I  S   : G  T  S  W  K  L  T  A  K  K  L  R  A  *  Q  G  S  S  Y   </first_frame>
            <second_frame>  F  K  F  A  T  K  A  N  G  V  N  A  G  K  I  I  L  W  K  I  S  V  S  S  K  C  S  R  A  C  Q  T  A  P  N  Q  Y  S  G  Q  V  C  P  P  R  A  R  N  S  G  H  I  H  R  S  I  G  S  S  N  R  S  S  K  A  D  F  R  R  F  H  G  F  *  A  A  R  A  S  L  C  L  P  T  M  G  F  P  T   : G  Y  *  P  W  S  D  T  F  V  T  G  G  F  Q  E  R  G  Y  S  I  V  Q  T  T  N  G  G  K  E  E  T  M  A  T  G  R  Q  L  G  R  F  W  E  C  I  R  C  I  G  G  A  E  A  *  L  E  *  Y  V  W  H  N  D  S  S  S  S  Y  P  Q  S  G  L  V  S  E  I  A  L  E  S  Q  :  G  R  L  G  S  L  L  Q  R  N  *  E  P  S  K  D  H  R  M  </second_frame>
            <third_frame>   S  S  L  Q  Q  K  Q  M  E  S  T  P  E  K  L  Y  F  G  K  S  L  L  V  P  S  V  Q  E  L  A  K  Q  H  L  T  N  I  P  A  R  Y  V  R  P  E  Q  E  T  P  V  I  S  T  G  A  S  V  P  V  I  D  L  Q  K  L  I  S  G  D  S  M  D  S  E  L  Q  E  L  H  S  A  C  Q  Q  W  G  F  L  Q  :  V  I  N  H  G  V  T  P  S  L  L  E  D  F  K  R  E  V  I  Q  L  F  K  L  P  M  E  E  K  K  K  L  W  Q  Q  E  D  S  L  E  G  F  G  N  A  F  V  V  S  E  E  Q  K  L  D  W  S  D  M  F  G  I  M  T  L  P  P  R  I  R  K  V  D  L  F  Q  K  L  P  S  N  L  R :   D  V  L  E  A  Y  C  K  E  I  K  S  L  A  R  I  I  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118875" stop="118609"/>
                    <exon start="117258" stop="117011"/>
                    <exon start="116936" stop="116879"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLQQKQMESTPEKLYFGKSLLVPSVQELAKQHLTNIPARYVRPEQETPVISTGASVPVIDLQKLISGDSMDSELQELHSACQQWGFLQVINHGVTPSLLEDFKREVIQLFKLPMEEKKKLWQQEDSLEGFGNAFVVSEEQKLDWSDMFGIMTLPPRIRKVDLFQKLPSNLRDVLEAYCKEIKSLARIIVC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 227 chains have been computed
$ 
$ memory statistics:
$ 742040 bytes spliced alignments in total
$ 85 spliced alignments have been stored
$ 8729 bytes was the average size of a spliced alignment
$ 20136 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1830 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 327 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:54:20
-->
